Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0880046179.01.T01 | XP_013457644.1 | 97.975 | 395 | 8 | 0 | 4 | 398 | 42 | 436 | 0 | 790 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0880046179.01.T01 | Q9STI6 | 79.587 | 387 | 67 | 4 | 19 | 398 | 55 | 436 | 0 | 602 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0880046179.01.T01 | A0A072V0K9 | 97.975 | 395 | 8 | 0 | 4 | 398 | 42 | 436 | 0.0 | 790 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0780041213.01 | MsG0880046179.01 | 0.812445 | 4.223652e-51 | 2.686165e-48 |
MsG0480021652.01 | MsG0880046179.01 | 0.819632 | 1.048915e-52 | 8.115178e-50 |
MsG0780039440.01 | MsG0880046179.01 | 0.827470 | 1.537454e-54 | 1.485679e-51 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0880046179.01.T01 | MTR_4g102270 | 97.975 | 395 | 8 | 0 | 4 | 398 | 42 | 436 | 0.0 | 790 |
MsG0880046179.01.T01 | MTR_5g011940 | 79.730 | 370 | 70 | 2 | 20 | 387 | 56 | 422 | 0.0 | 611 |
MsG0880046179.01.T01 | MTR_0354s0040 | 76.378 | 381 | 87 | 2 | 10 | 389 | 38 | 416 | 0.0 | 602 |
MsG0880046179.01.T01 | MTR_4g024600 | 74.803 | 381 | 95 | 1 | 10 | 389 | 55 | 435 | 0.0 | 594 |
MsG0880046179.01.T01 | MTR_3g084090 | 69.351 | 385 | 111 | 1 | 9 | 386 | 46 | 430 | 0.0 | 553 |
MsG0880046179.01.T01 | MTR_4g129820 | 71.547 | 362 | 103 | 0 | 28 | 389 | 68 | 429 | 0.0 | 548 |
MsG0880046179.01.T01 | MTR_2g032100 | 27.401 | 354 | 217 | 13 | 50 | 381 | 66 | 401 | 4.75e-25 | 106 |
MsG0880046179.01.T01 | MTR_8g099535 | 28.775 | 351 | 210 | 12 | 53 | 381 | 2 | 334 | 2.66e-23 | 100 |
MsG0880046179.01.T01 | MTR_5g009170 | 27.714 | 350 | 213 | 12 | 54 | 381 | 46 | 377 | 6.92e-23 | 99.8 |
MsG0880046179.01.T01 | MTR_8g089180 | 27.887 | 355 | 214 | 14 | 50 | 381 | 66 | 401 | 1.67e-22 | 99.0 |
MsG0880046179.01.T01 | MTR_8g089180 | 27.887 | 355 | 214 | 14 | 50 | 381 | 66 | 401 | 1.67e-22 | 99.0 |
MsG0880046179.01.T01 | MTR_5g009160 | 27.887 | 355 | 208 | 13 | 53 | 381 | 2 | 334 | 4.86e-21 | 93.6 |
MsG0880046179.01.T01 | MTR_2g073240 | 28.571 | 350 | 218 | 11 | 41 | 383 | 8 | 332 | 6.22e-20 | 92.4 |
MsG0880046179.01.T01 | MTR_0034s0060 | 26.686 | 341 | 209 | 9 | 55 | 382 | 137 | 449 | 8.15e-20 | 92.0 |
MsG0880046179.01.T01 | MTR_4g120030 | 26.741 | 359 | 221 | 11 | 23 | 375 | 79 | 401 | 1.41e-19 | 90.5 |
MsG0880046179.01.T01 | MTR_1g009600 | 26.190 | 336 | 217 | 11 | 55 | 382 | 5 | 317 | 3.50e-19 | 90.1 |
MsG0880046179.01.T01 | MTR_8g096880 | 27.666 | 347 | 221 | 11 | 53 | 381 | 4 | 338 | 4.55e-19 | 88.2 |
MsG0880046179.01.T01 | MTR_4g063600 | 26.048 | 334 | 201 | 13 | 53 | 375 | 30 | 328 | 2.05e-18 | 86.3 |
MsG0880046179.01.T01 | MTR_8g096880 | 27.566 | 341 | 199 | 11 | 53 | 366 | 4 | 323 | 1.22e-17 | 83.6 |
MsG0880046179.01.T01 | MTR_4g063600 | 26.347 | 334 | 197 | 14 | 53 | 375 | 30 | 325 | 1.75e-17 | 83.2 |
MsG0880046179.01.T01 | MTR_7g115080 | 23.885 | 381 | 243 | 13 | 19 | 384 | 3 | 351 | 3.41e-17 | 82.8 |
MsG0880046179.01.T01 | MTR_2g032100 | 30.808 | 198 | 127 | 6 | 50 | 242 | 66 | 258 | 3.44e-17 | 82.0 |
MsG0880046179.01.T01 | MTR_4g134490 | 26.075 | 372 | 229 | 15 | 35 | 381 | 7 | 357 | 5.84e-17 | 82.0 |
MsG0880046179.01.T01 | MTR_7g115080 | 24.566 | 346 | 216 | 12 | 52 | 384 | 25 | 338 | 1.57e-16 | 80.9 |
MsG0880046179.01.T01 | MTR_7g115080 | 24.566 | 346 | 216 | 12 | 52 | 384 | 59 | 372 | 2.26e-16 | 80.9 |
MsG0880046179.01.T01 | MTR_1g080950 | 25.072 | 347 | 214 | 12 | 52 | 384 | 24 | 338 | 3.87e-16 | 79.7 |
MsG0880046179.01.T01 | MTR_1g080950 | 25.072 | 347 | 214 | 12 | 52 | 384 | 60 | 374 | 4.45e-16 | 79.7 |
MsG0880046179.01.T01 | MTR_1g088480 | 26.154 | 325 | 198 | 11 | 57 | 375 | 120 | 408 | 6.60e-16 | 79.3 |
MsG0880046179.01.T01 | MTR_4g134490 | 26.331 | 357 | 217 | 15 | 35 | 366 | 7 | 342 | 1.33e-15 | 78.2 |
MsG0880046179.01.T01 | MTR_2g096660 | 25.449 | 334 | 203 | 13 | 53 | 375 | 36 | 334 | 1.87e-14 | 74.3 |
MsG0880046179.01.T01 | MTR_8g096880 | 27.541 | 305 | 174 | 10 | 53 | 330 | 4 | 288 | 7.49e-14 | 72.0 |
MsG0880046179.01.T01 | MTR_4g101940 | 90.000 | 30 | 3 | 0 | 127 | 156 | 42 | 71 | 3.82e-13 | 64.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0880046179.01.T01 | AT4G12250 | 79.587 | 387 | 67 | 4 | 19 | 398 | 55 | 436 | 0.0 | 602 |
MsG0880046179.01.T01 | AT1G02000 | 72.911 | 395 | 107 | 0 | 3 | 397 | 40 | 434 | 0.0 | 601 |
MsG0880046179.01.T01 | AT4G00110 | 76.579 | 380 | 84 | 2 | 17 | 396 | 56 | 430 | 0.0 | 600 |
MsG0880046179.01.T01 | AT2G45310 | 78.492 | 358 | 75 | 2 | 32 | 387 | 72 | 429 | 0.0 | 587 |
MsG0880046179.01.T01 | AT3G23820 | 73.295 | 352 | 94 | 0 | 35 | 386 | 92 | 443 | 0.0 | 553 |
MsG0880046179.01.T01 | AT4G30440 | 72.423 | 359 | 99 | 0 | 28 | 386 | 61 | 419 | 0.0 | 520 |
MsG0880046179.01.T01 | AT1G30620 | 29.213 | 356 | 210 | 15 | 49 | 381 | 64 | 400 | 4.27e-24 | 103 |
MsG0880046179.01.T01 | AT1G30620 | 28.732 | 355 | 213 | 14 | 49 | 381 | 65 | 401 | 4.31e-24 | 103 |
MsG0880046179.01.T01 | AT1G30620 | 28.732 | 355 | 213 | 14 | 49 | 381 | 65 | 401 | 4.31e-24 | 103 |
MsG0880046179.01.T01 | AT1G30620 | 28.732 | 355 | 213 | 14 | 49 | 381 | 65 | 401 | 4.31e-24 | 103 |
MsG0880046179.01.T01 | AT1G30620 | 28.732 | 355 | 213 | 14 | 49 | 381 | 65 | 401 | 4.31e-24 | 103 |
MsG0880046179.01.T01 | AT4G23920 | 27.887 | 355 | 204 | 14 | 55 | 381 | 3 | 333 | 2.80e-22 | 97.4 |
MsG0880046179.01.T01 | AT3G14790 | 27.679 | 336 | 216 | 9 | 55 | 384 | 7 | 321 | 1.68e-21 | 97.1 |
MsG0880046179.01.T01 | AT3G14790 | 27.679 | 336 | 216 | 9 | 55 | 384 | 10 | 324 | 1.85e-21 | 97.1 |
MsG0880046179.01.T01 | AT4G10960 | 27.479 | 353 | 204 | 14 | 57 | 381 | 6 | 334 | 6.32e-21 | 93.6 |
MsG0880046179.01.T01 | AT1G12780 | 27.378 | 347 | 214 | 12 | 57 | 381 | 9 | 339 | 9.65e-21 | 92.8 |
MsG0880046179.01.T01 | AT4G20460 | 27.168 | 346 | 214 | 12 | 57 | 381 | 72 | 400 | 1.83e-20 | 92.8 |
MsG0880046179.01.T01 | AT5G44480 | 28.065 | 310 | 190 | 10 | 57 | 348 | 73 | 367 | 2.72e-20 | 92.4 |
MsG0880046179.01.T01 | AT5G44480 | 28.065 | 310 | 190 | 10 | 57 | 348 | 73 | 367 | 2.72e-20 | 92.4 |
MsG0880046179.01.T01 | AT5G44480 | 28.065 | 310 | 190 | 10 | 57 | 348 | 73 | 367 | 2.72e-20 | 92.4 |
MsG0880046179.01.T01 | AT5G44480 | 28.065 | 310 | 190 | 10 | 57 | 348 | 97 | 391 | 3.76e-20 | 92.0 |
MsG0880046179.01.T01 | AT1G78570 | 27.300 | 337 | 216 | 10 | 55 | 384 | 7 | 321 | 6.60e-20 | 92.4 |
MsG0880046179.01.T01 | AT1G64440 | 26.225 | 347 | 216 | 11 | 57 | 381 | 5 | 333 | 1.28e-18 | 86.7 |
MsG0880046179.01.T01 | AT3G53520 | 25.532 | 329 | 208 | 8 | 57 | 379 | 122 | 419 | 3.20e-18 | 86.7 |
MsG0880046179.01.T01 | AT1G53500 | 26.488 | 336 | 220 | 9 | 55 | 384 | 9 | 323 | 3.51e-18 | 87.0 |
MsG0880046179.01.T01 | AT1G30620 | 30.102 | 196 | 133 | 3 | 49 | 242 | 65 | 258 | 4.76e-18 | 84.3 |
MsG0880046179.01.T01 | AT2G47650 | 25.758 | 330 | 208 | 10 | 57 | 380 | 123 | 421 | 1.44e-17 | 84.7 |
MsG0880046179.01.T01 | AT3G62830 | 25.455 | 330 | 209 | 10 | 57 | 380 | 121 | 419 | 5.62e-17 | 82.8 |
MsG0880046179.01.T01 | AT3G62830 | 25.455 | 330 | 209 | 10 | 57 | 380 | 121 | 419 | 5.62e-17 | 82.8 |
MsG0880046179.01.T01 | AT2G28760 | 26.048 | 334 | 201 | 13 | 53 | 375 | 29 | 327 | 1.09e-16 | 81.3 |
MsG0880046179.01.T01 | AT2G28760 | 26.048 | 334 | 201 | 13 | 53 | 375 | 29 | 327 | 1.09e-16 | 81.3 |
MsG0880046179.01.T01 | AT2G28760 | 26.048 | 334 | 201 | 13 | 53 | 375 | 29 | 327 | 1.09e-16 | 81.3 |
MsG0880046179.01.T01 | AT2G28760 | 26.866 | 335 | 197 | 14 | 53 | 375 | 60 | 358 | 1.74e-16 | 80.9 |
MsG0880046179.01.T01 | AT3G53520 | 25.146 | 342 | 216 | 12 | 57 | 379 | 122 | 442 | 4.06e-16 | 80.1 |
MsG0880046179.01.T01 | AT3G53520 | 25.228 | 329 | 207 | 9 | 57 | 379 | 122 | 417 | 6.16e-16 | 79.7 |
MsG0880046179.01.T01 | AT2G47650 | 25.298 | 336 | 208 | 11 | 57 | 380 | 123 | 427 | 1.69e-15 | 78.2 |
MsG0880046179.01.T01 | AT3G53520 | 28.085 | 235 | 147 | 6 | 57 | 285 | 122 | 340 | 1.14e-14 | 75.1 |
MsG0880046179.01.T01 | AT5G28840 | 24.784 | 347 | 215 | 13 | 52 | 384 | 24 | 338 | 1.11e-13 | 72.4 |
MsG0880046179.01.T01 | AT5G28840 | 24.784 | 347 | 215 | 13 | 52 | 384 | 24 | 338 | 1.11e-13 | 72.4 |
Find 107 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGAAAGGTTCAGCTCAATTT+AGG | 0.159068 | 8:-70210946 | MsG0880046179.01.T01:CDS |
GAGTAAACTTGTTGCTATTT+TGG | 0.221911 | 8:-70210888 | MsG0880046179.01.T01:CDS |
CGCCGCGGCGACGGTGTTCT+TGG | 0.251675 | 8:-70211625 | MsG0880046179.01.T01:CDS |
AGTTTGGCTCAGAGGGAATT+TGG | 0.257449 | 8:-70210782 | MsG0880046179.01.T01:CDS |
ACTCATGGGGCGGTTCTCAC+TGG | 0.270005 | 8:-70211756 | MsG0880046179.01.T01:CDS |
CCTACCATTGATTTGGAAAC+AGG | 0.274005 | 8:-70210752 | MsG0880046179.01.T01:CDS |
CACTCATGCTAATATTAGTT+TGG | 0.274183 | 8:-70210798 | MsG0880046179.01.T01:CDS |
TAAGGGTTGTTTAGGGGCTT+TGG | 0.289137 | 8:-70211005 | MsG0880046179.01.T01:CDS |
TTATAAACCTACCATTGATT+TGG | 0.301993 | 8:-70210759 | MsG0880046179.01.T01:CDS |
GCCGTGTCCTCGGCGACTCA+TGG | 0.311385 | 8:-70211771 | MsG0880046179.01.T01:CDS |
ATCCTCAACCAGCAATTGTT+TGG | 0.315783 | 8:-70211339 | MsG0880046179.01.T01:CDS |
TTTCACTGTTTATGGGCCTT+GGG | 0.318910 | 8:-70211152 | MsG0880046179.01.T01:CDS |
TTGCTGTGAACGTATGAGTT+AGG | 0.332218 | 8:+70211406 | None:intergenic |
GATGTTGTTAAGGGTTGTTT+AGG | 0.332876 | 8:-70211013 | MsG0880046179.01.T01:CDS |
GCGGTGGTTGACGGTGGTGG+AGG | 0.337677 | 8:+70211799 | None:intergenic |
ATGTTGTTAAGGGTTGTTTA+GGG | 0.346777 | 8:-70211012 | MsG0880046179.01.T01:CDS |
TTACATTGATGATGTTGTTA+AGG | 0.348766 | 8:-70211023 | MsG0880046179.01.T01:CDS |
GAAAGGTTCAGCTCAATTTA+GGG | 0.354757 | 8:-70210945 | MsG0880046179.01.T01:CDS |
GCTTCGTCTAGCTCCGTTTA+CGG | 0.358151 | 8:-70211316 | MsG0880046179.01.T01:CDS |
GGAGCGGTGGTTGACGGTGG+TGG | 0.375711 | 8:+70211796 | None:intergenic |
AAGAAGAAATACGCCATATC+AGG | 0.377171 | 8:+70211124 | None:intergenic |
TCCTCAACCAGCAATTGTTT+GGG | 0.378763 | 8:-70211338 | MsG0880046179.01.T01:CDS |
AACAAAATTGTTCTCGTCAC+CGG | 0.383309 | 8:-70211691 | MsG0880046179.01.T01:CDS |
GACGAAGCCCAAACAATTGC+TGG | 0.388048 | 8:+70211331 | None:intergenic |
AATTTAACATCGCCGTTTCT+CGG | 0.391354 | 8:+70210821 | None:intergenic |
GCCTTGGGGAAGGCCTGATA+TGG | 0.395198 | 8:-70211137 | MsG0880046179.01.T01:CDS |
GTTCTCGTCACCGGCGCCGC+TGG | 0.402134 | 8:-70211682 | MsG0880046179.01.T01:CDS |
CCGTGTCCTCGGCGACTCAT+GGG | 0.405721 | 8:-70211770 | MsG0880046179.01.T01:CDS |
TACATTGATGATGTTGTTAA+GGG | 0.405786 | 8:-70211022 | MsG0880046179.01.T01:CDS |
GCCGCGGCGACGGTGTTCTT+GGG | 0.412962 | 8:-70211624 | MsG0880046179.01.T01:CDS |
CTGTTTATGGGCCTTGGGGA+AGG | 0.414134 | 8:-70211147 | MsG0880046179.01.T01:CDS |
CTTTGAATTCAATCCGTAAA+CGG | 0.421136 | 8:+70211303 | None:intergenic |
ACCGCTCCCCGCCGTGTCCT+CGG | 0.431799 | 8:-70211781 | MsG0880046179.01.T01:CDS |
TTGTTTAGGGGCTTTGGATA+CGG | 0.432645 | 8:-70210999 | MsG0880046179.01.T01:CDS |
TGCTGTGAACGTATGAGTTA+GGG | 0.436331 | 8:+70211407 | None:intergenic |
GTTCGATCTTTCTCCGAAAA+CGG | 0.440370 | 8:+70211277 | None:intergenic |
AGATGCATCACGTGCGTAAA+CGG | 0.440902 | 8:+70211466 | None:intergenic |
GCCGAGGACACGGCGGGGAG+CGG | 0.442287 | 8:+70211780 | None:intergenic |
CGGCGGGGAGCGGTGGTTGA+CGG | 0.442614 | 8:+70211790 | None:intergenic |
CTCATGGGGCGGTTCTCACT+GGG | 0.460900 | 8:-70211755 | MsG0880046179.01.T01:CDS |
CGGTGGTTGACGGTGGTGGA+GGG | 0.463319 | 8:+70211800 | None:intergenic |
ACAAGTTTACTCACAGGAAC+AGG | 0.469679 | 8:+70210899 | None:intergenic |
TTCTTCTGGGTCTATCAAGA+AGG | 0.474036 | 8:-70210693 | MsG0880046179.01.T01:CDS |
CGGTGGTGGAGGGTTGAAAG+TGG | 0.475360 | 8:+70211810 | None:intergenic |
ACCTTCCACCACGAAAATTC+CGG | 0.482326 | 8:+70211534 | None:intergenic |
GAGGACACGGCGGGGAGCGG+TGG | 0.492372 | 8:+70211783 | None:intergenic |
GAAAGATCGAACAGACCAAC+CGG | 0.494796 | 8:-70211266 | MsG0880046179.01.T01:CDS |
GCCCAAACAATTGCTGGTTG+AGG | 0.496033 | 8:+70211337 | None:intergenic |
ATGCATCTCGCGGCACAAGC+TGG | 0.496414 | 8:-70211451 | MsG0880046179.01.T01:CDS |
TCAAGAAGGGATCTTCATCT+TGG | 0.498221 | 8:-70210679 | MsG0880046179.01.T01:CDS |
ACCGGCGCCGCTGGTTTCGT+CGG | 0.501707 | 8:-70211673 | MsG0880046179.01.T01:CDS |
CATACTTATAATCATATCTA+CGG | 0.505938 | 8:-70211199 | MsG0880046179.01.T01:CDS |
TCCGACGAAACCAGCGGCGC+CGG | 0.507719 | 8:+70211672 | None:intergenic |
TTGGGATTGATAATTTCAAT+CGG | 0.514397 | 8:-70211606 | MsG0880046179.01.T01:CDS |
CGGGGAGCGGTGGTTGACGG+TGG | 0.514771 | 8:+70211793 | None:intergenic |
CTAGCCACTGATCCACCATC+TGG | 0.517087 | 8:+70211055 | None:intergenic |
GTTGGATGGCGAATTCCGGC+GGG | 0.517720 | 8:+70211711 | None:intergenic |
CAACCCTGTTTCCAAATCAA+TGG | 0.519312 | 8:+70210748 | None:intergenic |
CCTGTTTCCAAATCAATGGT+AGG | 0.525130 | 8:+70210752 | None:intergenic |
CCCATGAGTCGCCGAGGACA+CGG | 0.525492 | 8:+70211770 | None:intergenic |
TAATATTAGTTTGGCTCAGA+GGG | 0.528729 | 8:-70210789 | MsG0880046179.01.T01:CDS |
TGAGTCGCCGAGGACACGGC+GGG | 0.542955 | 8:+70211774 | None:intergenic |
GTGCTTCCTATGCCGAGAAA+CGG | 0.545248 | 8:-70210833 | MsG0880046179.01.T01:CDS |
TGTTGGATGGCGAATTCCGG+CGG | 0.548138 | 8:+70211710 | None:intergenic |
CGTTTACGGATTGAATTCAA+AGG | 0.552246 | 8:-70211302 | MsG0880046179.01.T01:CDS |
GGGAGTGGTGGGAAGAAGAA+AGG | 0.552440 | 8:-70210962 | MsG0880046179.01.T01:CDS |
TTGATTTGGAAACAGGGTTG+AGG | 0.555240 | 8:-70210745 | MsG0880046179.01.T01:CDS |
TTCACTGTTTATGGGCCTTG+GGG | 0.556043 | 8:-70211151 | MsG0880046179.01.T01:CDS |
GCTTTAAAACGCCGCGGCGA+CGG | 0.557114 | 8:-70211634 | MsG0880046179.01.T01:CDS |
TACGTTCACAGCAACCTCGC+TGG | 0.557251 | 8:-70211397 | MsG0880046179.01.T01:CDS |
ACATCGCCGTTTCTCGGCAT+AGG | 0.558905 | 8:+70210827 | None:intergenic |
TCTTCTGGGTCTATCAAGAA+GGG | 0.561694 | 8:-70210692 | MsG0880046179.01.T01:CDS |
CAGATGGTGGATCAGTGGCT+AGG | 0.561872 | 8:-70211054 | MsG0880046179.01.T01:CDS |
CTACCATTGATTTGGAAACA+GGG | 0.564836 | 8:-70210751 | MsG0880046179.01.T01:CDS |
ATACTTATAATCATATCTAC+GGG | 0.564967 | 8:-70211198 | MsG0880046179.01.T01:CDS |
AGATGGTGGATCAGTGGCTA+GGG | 0.569033 | 8:-70211053 | MsG0880046179.01.T01:CDS |
TGTTGTTAAGGGTTGTTTAG+GGG | 0.574733 | 8:-70211011 | MsG0880046179.01.T01:CDS |
CTAATATTAGTTTGGCTCAG+AGG | 0.575459 | 8:-70210790 | MsG0880046179.01.T01:CDS |
AGTATGCGCAATTCCTTCGC+CGG | 0.580214 | 8:+70211216 | None:intergenic |
GCAACGAAGAAAGCCGGCGA+AGG | 0.586493 | 8:-70211229 | MsG0880046179.01.T01:CDS |
CTGCATAGAGACTCGCCGGT+TGG | 0.586709 | 8:+70211251 | None:intergenic |
GGCGTATTTCTTCTTCACAA+AGG | 0.587530 | 8:-70211116 | MsG0880046179.01.T01:CDS |
GTGGAGAATAAAAGAAAACA+AGG | 0.600754 | 8:+70211829 | None:intergenic |
GGTTGAGGAAGTTTGTGAAG+TGG | 0.606221 | 8:-70210730 | MsG0880046179.01.T01:CDS |
TTTGCAAGCTTCTAGAAGAA+CGG | 0.606850 | 8:+70211369 | None:intergenic |
TATGCAGCAACGAAGAAAGC+CGG | 0.608050 | 8:-70211235 | MsG0880046179.01.T01:CDS |
CGTGTCCTCGGCGACTCATG+GGG | 0.609532 | 8:-70211769 | MsG0880046179.01.T01:CDS |
GTTGCTGCATAGAGACTCGC+CGG | 0.612614 | 8:+70211247 | None:intergenic |
ATCACCAGATGGTGGATCAG+TGG | 0.618132 | 8:-70211059 | MsG0880046179.01.T01:CDS |
AAAAGAGTACTGGGAGTGGT+GGG | 0.619132 | 8:-70210973 | MsG0880046179.01.T01:CDS |
ATAAAAGAAAACAAGGAAAG+CGG | 0.626199 | 8:+70211836 | None:intergenic |
ATAGCAACAAGTTTACTCAC+AGG | 0.630845 | 8:+70210893 | None:intergenic |
GTCCTCGGCGACTCATGGGG+CGG | 0.631889 | 8:-70211766 | MsG0880046179.01.T01:CDS |
GCCATATCAGGCCTTCCCCA+AGG | 0.633575 | 8:+70211136 | None:intergenic |
TCCCAAGAACACCGTCGCCG+CGG | 0.635756 | 8:+70211623 | None:intergenic |
TTGTATCGAAATCAGCCCGC+CGG | 0.643781 | 8:-70211726 | MsG0880046179.01.T01:CDS |
CAGAAGCTTCTAGAACGCGC+CGG | 0.650652 | 8:-70211553 | MsG0880046179.01.T01:CDS |
GTGTTTGAATCACCAGATGG+TGG | 0.651163 | 8:-70211067 | MsG0880046179.01.T01:CDS |
AACCGCCCCATGAGTCGCCG+AGG | 0.656081 | 8:+70211764 | None:intergenic |
ACAGTGTTTGAATCACCAGA+TGG | 0.668888 | 8:-70211070 | MsG0880046179.01.T01:CDS |
TACGCACGTGATGCATCTCG+CGG | 0.672266 | 8:-70211461 | MsG0880046179.01.T01:CDS |
ATGACTTCCGACGAAACCAG+CGG | 0.676900 | 8:+70211666 | None:intergenic |
ATGAGTCGCCGAGGACACGG+CGG | 0.728360 | 8:+70211773 | None:intergenic |
GAGTCGCCGAGGACACGGCG+GGG | 0.730514 | 8:+70211775 | None:intergenic |
GTGGAAGGTGACATCAACGA+CGG | 0.748007 | 8:-70211520 | MsG0880046179.01.T01:CDS |
GAAGAACGGTGAAACCAGCG+AGG | 0.752594 | 8:+70211383 | None:intergenic |
GCACTCGCTTTAAAACGCCG+CGG | 0.776540 | 8:-70211640 | MsG0880046179.01.T01:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATACTTATAATCATATCTAC+GGG | - | Chr8:70211328-70211347 | MsG0880046179.01.T01:CDS | 20.0% |
!! | CATACTTATAATCATATCTA+CGG | - | Chr8:70211327-70211346 | MsG0880046179.01.T01:CDS | 20.0% |
! | ATAAAAGAAAACAAGGAAAG+CGG | + | Chr8:70210693-70210712 | None:intergenic | 25.0% |
!! | TTATAAACCTACCATTGATT+TGG | - | Chr8:70211767-70211786 | MsG0880046179.01.T01:CDS | 25.0% |
!! | TTGGGATTGATAATTTCAAT+CGG | - | Chr8:70210920-70210939 | MsG0880046179.01.T01:CDS | 25.0% |
!!! | AATTTAGGGTTTTCAATTTG+GGG | - | Chr8:70211595-70211614 | MsG0880046179.01.T01:CDS | 25.0% |
!!! | ATCTTGAGTTTTATTCTTCT+GGG | - | Chr8:70211820-70211839 | MsG0880046179.01.T01:CDS | 25.0% |
!!! | CAATTTAGGGTTTTCAATTT+GGG | - | Chr8:70211594-70211613 | MsG0880046179.01.T01:CDS | 25.0% |
!!! | TACATTGATGATGTTGTTAA+GGG | - | Chr8:70211504-70211523 | MsG0880046179.01.T01:CDS | 25.0% |
!!! | TATCTTGAGTTTTATTCTTC+TGG | - | Chr8:70211819-70211838 | MsG0880046179.01.T01:CDS | 25.0% |
!!! | TCAATTTAGGGTTTTCAATT+TGG | - | Chr8:70211593-70211612 | MsG0880046179.01.T01:CDS | 25.0% |
!!! | TTACATTGATGATGTTGTTA+AGG | - | Chr8:70211503-70211522 | MsG0880046179.01.T01:CDS | 25.0% |
!!! | TTCACAAAGGATATTTTGAA+GGG | - | Chr8:70211423-70211442 | MsG0880046179.01.T01:CDS | 25.0% |
ATGTTGTTAAGGGTTGTTTA+GGG | - | Chr8:70211514-70211533 | MsG0880046179.01.T01:CDS | 30.0% | |
CACTCATGCTAATATTAGTT+TGG | - | Chr8:70211728-70211747 | MsG0880046179.01.T01:CDS | 30.0% | |
CTTTGAATTCAATCCGTAAA+CGG | + | Chr8:70211226-70211245 | None:intergenic | 30.0% | |
GTGGAGAATAAAAGAAAACA+AGG | + | Chr8:70210700-70210719 | None:intergenic | 30.0% | |
! | TAATATTAGTTTGGCTCAGA+GGG | - | Chr8:70211737-70211756 | MsG0880046179.01.T01:CDS | 30.0% |
! | TGCGATTTTTCACTGTTTAT+GGG | - | Chr8:70211367-70211386 | MsG0880046179.01.T01:CDS | 30.0% |
! | TTGCGATTTTTCACTGTTTA+TGG | - | Chr8:70211366-70211385 | MsG0880046179.01.T01:CDS | 30.0% |
!! | CTTCACAAAGGATATTTTGA+AGG | - | Chr8:70211422-70211441 | MsG0880046179.01.T01:CDS | 30.0% |
!! | TATTTTGGAGAAGCTTTTGA+AGG | - | Chr8:70211653-70211672 | MsG0880046179.01.T01:CDS | 30.0% |
!! | TCACAAAGGATATTTTGAAG+GGG | - | Chr8:70211424-70211443 | MsG0880046179.01.T01:CDS | 30.0% |
!!! | GAGTAAACTTGTTGCTATTT+TGG | - | Chr8:70211638-70211657 | MsG0880046179.01.T01:CDS | 30.0% |
AACAAAATTGTTCTCGTCAC+CGG | - | Chr8:70210835-70210854 | MsG0880046179.01.T01:CDS | 35.0% | |
AAGAAGAAATACGCCATATC+AGG | + | Chr8:70211405-70211424 | None:intergenic | 35.0% | |
AATTTAACATCGCCGTTTCT+CGG | + | Chr8:70211708-70211727 | None:intergenic | 35.0% | |
AGAAAGGTTCAGCTCAATTT+AGG | - | Chr8:70211580-70211599 | MsG0880046179.01.T01:CDS | 35.0% | |
ATAGCAACAAGTTTACTCAC+AGG | + | Chr8:70211636-70211655 | None:intergenic | 35.0% | |
GAAAGGTTCAGCTCAATTTA+GGG | - | Chr8:70211581-70211600 | MsG0880046179.01.T01:CDS | 35.0% | |
GATGTTGTTAAGGGTTGTTT+AGG | - | Chr8:70211513-70211532 | MsG0880046179.01.T01:CDS | 35.0% | |
TGTTGTTAAGGGTTGTTTAG+GGG | - | Chr8:70211515-70211534 | MsG0880046179.01.T01:CDS | 35.0% | |
! | ACGAGAACAATTTTGTTGGA+TGG | + | Chr8:70210832-70210851 | None:intergenic | 35.0% |
! | CGTTTACGGATTGAATTCAA+AGG | - | Chr8:70211224-70211243 | MsG0880046179.01.T01:CDS | 35.0% |
! | CTAATATTAGTTTGGCTCAG+AGG | - | Chr8:70211736-70211755 | MsG0880046179.01.T01:CDS | 35.0% |
! | GAATTCAAAGGTTCCGTTTT+CGG | - | Chr8:70211236-70211255 | MsG0880046179.01.T01:CDS | 35.0% |
! | TTTGCAAGCTTCTAGAAGAA+CGG | + | Chr8:70211160-70211179 | None:intergenic | 35.0% |
!! | CTACCATTGATTTGGAAACA+GGG | - | Chr8:70211775-70211794 | MsG0880046179.01.T01:CDS | 35.0% |
ACAAGTTTACTCACAGGAAC+AGG | + | Chr8:70211630-70211649 | None:intergenic | 40.0% | |
ACAGTGTTTGAATCACCAGA+TGG | - | Chr8:70211456-70211475 | MsG0880046179.01.T01:CDS | 40.0% | |
ATCCTCAACCAGCAATTGTT+TGG | - | Chr8:70211187-70211206 | MsG0880046179.01.T01:CDS | 40.0% | |
CAACCCTGTTTCCAAATCAA+TGG | + | Chr8:70211781-70211800 | None:intergenic | 40.0% | |
CCTGTTTCCAAATCAATGGT+AGG | + | Chr8:70211777-70211796 | None:intergenic | 40.0% | |
GGCGTATTTCTTCTTCACAA+AGG | - | Chr8:70211410-70211429 | MsG0880046179.01.T01:CDS | 40.0% | |
GTTCGATCTTTCTCCGAAAA+CGG | + | Chr8:70211252-70211271 | None:intergenic | 40.0% | |
TCAAGAAGGGATCTTCATCT+TGG | - | Chr8:70211847-70211866 | MsG0880046179.01.T01:CDS | 40.0% | |
TCCTCAACCAGCAATTGTTT+GGG | - | Chr8:70211188-70211207 | MsG0880046179.01.T01:CDS | 40.0% | |
TCTTCTGGGTCTATCAAGAA+GGG | - | Chr8:70211834-70211853 | MsG0880046179.01.T01:CDS | 40.0% | |
TGCTGTGAACGTATGAGTTA+GGG | + | Chr8:70211122-70211141 | None:intergenic | 40.0% | |
TTCTTCTGGGTCTATCAAGA+AGG | - | Chr8:70211833-70211852 | MsG0880046179.01.T01:CDS | 40.0% | |
TTGCTGTGAACGTATGAGTT+AGG | + | Chr8:70211123-70211142 | None:intergenic | 40.0% | |
TTTCACTGTTTATGGGCCTT+GGG | - | Chr8:70211374-70211393 | MsG0880046179.01.T01:CDS | 40.0% | |
! | GGTGACGAGAACAATTTTGT+TGG | + | Chr8:70210836-70210855 | None:intergenic | 40.0% |
! | TCTCAAGAAGCTTTTCGATG+TGG | - | Chr8:70211035-70211054 | MsG0880046179.01.T01:CDS | 40.0% |
! | TTTTCACTGTTTATGGGCCT+TGG | - | Chr8:70211373-70211392 | MsG0880046179.01.T01:CDS | 40.0% |
! | TTTTGTTGGATGGCGAATTC+CGG | + | Chr8:70210822-70210841 | None:intergenic | 40.0% |
!! | ATACGGCGAAAAAGAGTACT+GGG | - | Chr8:70211544-70211563 | MsG0880046179.01.T01:CDS | 40.0% |
!! | CCTACCATTGATTTGGAAAC+AGG | - | Chr8:70211774-70211793 | MsG0880046179.01.T01:CDS | 40.0% |
!! | TTGATTTGGAAACAGGGTTG+AGG | - | Chr8:70211781-70211800 | MsG0880046179.01.T01:CDS | 40.0% |
!! | TTGTTTAGGGGCTTTGGATA+CGG | - | Chr8:70211527-70211546 | MsG0880046179.01.T01:CDS | 40.0% |
ACCTTCCACCACGAAAATTC+CGG | + | Chr8:70210995-70211014 | None:intergenic | 45.0% | |
AGATGCATCACGTGCGTAAA+CGG | + | Chr8:70211063-70211082 | None:intergenic | 45.0% | |
GAAAGATCGAACAGACCAAC+CGG | - | Chr8:70211260-70211279 | MsG0880046179.01.T01:CDS | 45.0% | |
GGTTGAGGAAGTTTGTGAAG+TGG | - | Chr8:70211796-70211815 | MsG0880046179.01.T01:CDS | 45.0% | |
GTGTTTGAATCACCAGATGG+TGG | - | Chr8:70211459-70211478 | MsG0880046179.01.T01:CDS | 45.0% | |
TAAGGGTTGTTTAGGGGCTT+TGG | - | Chr8:70211521-70211540 | MsG0880046179.01.T01:CDS | 45.0% | |
TATGCAGCAACGAAGAAAGC+CGG | - | Chr8:70211291-70211310 | MsG0880046179.01.T01:CDS | 45.0% | |
TTCACTGTTTATGGGCCTTG+GGG | - | Chr8:70211375-70211394 | MsG0880046179.01.T01:CDS | 45.0% | |
! | AGTTTGGCTCAGAGGGAATT+TGG | - | Chr8:70211744-70211763 | MsG0880046179.01.T01:CDS | 45.0% |
! | GATACGGCGAAAAAGAGTAC+TGG | - | Chr8:70211543-70211562 | MsG0880046179.01.T01:CDS | 45.0% |
!! | AAAAAGAGTACTGGGAGTGG+TGG | - | Chr8:70211552-70211571 | MsG0880046179.01.T01:CDS | 45.0% |
!! | AAAAGAGTACTGGGAGTGGT+GGG | - | Chr8:70211553-70211572 | MsG0880046179.01.T01:CDS | 45.0% |
AGTATGCGCAATTCCTTCGC+CGG | + | Chr8:70211313-70211332 | None:intergenic | 50.0% | |
ATGACTTCCGACGAAACCAG+CGG | + | Chr8:70210863-70210882 | None:intergenic | 50.0% | |
GACGAAGCCCAAACAATTGC+TGG | + | Chr8:70211198-70211217 | None:intergenic | 50.0% | |
GTGCTTCCTATGCCGAGAAA+CGG | - | Chr8:70211693-70211712 | MsG0880046179.01.T01:CDS | 50.0% | |
GTGGAAGGTGACATCAACGA+CGG | - | Chr8:70211006-70211025 | MsG0880046179.01.T01:CDS | 50.0% | |
TTGTATCGAAATCAGCCCGC+CGG | - | Chr8:70210800-70210819 | MsG0880046179.01.T01:CDS | 50.0% | |
! | GCCCAAACAATTGCTGGTTG+AGG | + | Chr8:70211192-70211211 | None:intergenic | 50.0% |
! | GCTTCGTCTAGCTCCGTTTA+CGG | - | Chr8:70211210-70211229 | MsG0880046179.01.T01:CDS | 50.0% |
! | GCTTCTGACGAGCGTGTTTT+AGG | + | Chr8:70210960-70210979 | None:intergenic | 50.0% |
!! | AGATGGTGGATCAGTGGCTA+GGG | - | Chr8:70211473-70211492 | MsG0880046179.01.T01:CDS | 50.0% |
!! | ATCACCAGATGGTGGATCAG+TGG | - | Chr8:70211467-70211486 | MsG0880046179.01.T01:CDS | 50.0% |
!! | GCGAAAAAGAGTACTGGGAG+TGG | - | Chr8:70211549-70211568 | MsG0880046179.01.T01:CDS | 50.0% |
ACATCGCCGTTTCTCGGCAT+AGG | + | Chr8:70211702-70211721 | None:intergenic | 55.0% | |
CTAGCCACTGATCCACCATC+TGG | + | Chr8:70211474-70211493 | None:intergenic | 55.0% | |
CTGTTTATGGGCCTTGGGGA+AGG | - | Chr8:70211379-70211398 | MsG0880046179.01.T01:CDS | 55.0% | |
GAAGAACGGTGAAACCAGCG+AGG | + | Chr8:70211146-70211165 | None:intergenic | 55.0% | |
GTTGCTGCATAGAGACTCGC+CGG | + | Chr8:70211282-70211301 | None:intergenic | 55.0% | |
TACGCACGTGATGCATCTCG+CGG | - | Chr8:70211065-70211084 | MsG0880046179.01.T01:CDS | 55.0% | |
TACGTTCACAGCAACCTCGC+TGG | - | Chr8:70211129-70211148 | MsG0880046179.01.T01:CDS | 55.0% | |
TGTTGGATGGCGAATTCCGG+CGG | + | Chr8:70210819-70210838 | None:intergenic | 55.0% | |
! | AGAACGCGCCGGAATTTTCG+TGG | - | Chr8:70210984-70211003 | MsG0880046179.01.T01:CDS | 55.0% |
! | GGGAGTGGTGGGAAGAAGAA+AGG | - | Chr8:70211564-70211583 | MsG0880046179.01.T01:CDS | 55.0% |
!! | CAGAAGCTTCTAGAACGCGC+CGG | - | Chr8:70210973-70210992 | MsG0880046179.01.T01:CDS | 55.0% |
!! | CAGATGGTGGATCAGTGGCT+AGG | - | Chr8:70211472-70211491 | MsG0880046179.01.T01:CDS | 55.0% |
!! | GCACTCGCTTTAAAACGCCG+CGG | - | Chr8:70210886-70210905 | MsG0880046179.01.T01:CDS | 55.0% |
!! | GCCGGAATTTTCGTGGTGGA+AGG | - | Chr8:70210991-70211010 | MsG0880046179.01.T01:CDS | 55.0% |
ACTCATGGGGCGGTTCTCAC+TGG | - | Chr8:70210770-70210789 | MsG0880046179.01.T01:CDS | 60.0% | |
ATGCATCTCGCGGCACAAGC+TGG | - | Chr8:70211075-70211094 | MsG0880046179.01.T01:CDS | 60.0% | |
CTCATGGGGCGGTTCTCACT+GGG | - | Chr8:70210771-70210790 | MsG0880046179.01.T01:CDS | 60.0% | |
CTGCATAGAGACTCGCCGGT+TGG | + | Chr8:70211278-70211297 | None:intergenic | 60.0% | |
GCAACGAAGAAAGCCGGCGA+AGG | - | Chr8:70211297-70211316 | MsG0880046179.01.T01:CDS | 60.0% | |
GCCATATCAGGCCTTCCCCA+AGG | + | Chr8:70211393-70211412 | None:intergenic | 60.0% | |
GCCTTGGGGAAGGCCTGATA+TGG | - | Chr8:70211389-70211408 | MsG0880046179.01.T01:CDS | 60.0% | |
GTTGGATGGCGAATTCCGGC+GGG | + | Chr8:70210818-70210837 | None:intergenic | 60.0% | |
! | ACGCGCCGGAATTTTCGTGG+TGG | - | Chr8:70210987-70211006 | MsG0880046179.01.T01:CDS | 60.0% |
!! | CGGTGGTGGAGGGTTGAAAG+TGG | + | Chr8:70210719-70210738 | None:intergenic | 60.0% |
!! | GCTTTAAAACGCCGCGGCGA+CGG | - | Chr8:70210892-70210911 | MsG0880046179.01.T01:CDS | 60.0% |
ATGAGTCGCCGAGGACACGG+CGG | + | Chr8:70210756-70210775 | None:intergenic | 65.0% | |
CCCATGAGTCGCCGAGGACA+CGG | + | Chr8:70210759-70210778 | None:intergenic | 65.0% | |
CCGTGTCCTCGGCGACTCAT+GGG | - | Chr8:70210756-70210775 | MsG0880046179.01.T01:CDS | 65.0% | |
CGTGTCCTCGGCGACTCATG+GGG | - | Chr8:70210757-70210776 | MsG0880046179.01.T01:CDS | 65.0% | |
TCCCAAGAACACCGTCGCCG+CGG | + | Chr8:70210906-70210925 | None:intergenic | 65.0% | |
!! | CGGTGGTTGACGGTGGTGGA+GGG | + | Chr8:70210729-70210748 | None:intergenic | 65.0% |
AACCGCCCCATGAGTCGCCG+AGG | + | Chr8:70210765-70210784 | None:intergenic | 70.0% | |
GCCGCGGCGACGGTGTTCTT+GGG | - | Chr8:70210902-70210921 | MsG0880046179.01.T01:CDS | 70.0% | |
GCCGTGTCCTCGGCGACTCA+TGG | - | Chr8:70210755-70210774 | MsG0880046179.01.T01:CDS | 70.0% | |
GGAGCGGTGGTTGACGGTGG+TGG | + | Chr8:70210733-70210752 | None:intergenic | 70.0% | |
GTCCTCGGCGACTCATGGGG+CGG | - | Chr8:70210760-70210779 | MsG0880046179.01.T01:CDS | 70.0% | |
TCCGACGAAACCAGCGGCGC+CGG | + | Chr8:70210857-70210876 | None:intergenic | 70.0% | |
TGAGTCGCCGAGGACACGGC+GGG | + | Chr8:70210755-70210774 | None:intergenic | 70.0% | |
! | GCGGTGGTTGACGGTGGTGG+AGG | + | Chr8:70210730-70210749 | None:intergenic | 70.0% |
!! | ACCGGCGCCGCTGGTTTCGT+CGG | - | Chr8:70210853-70210872 | MsG0880046179.01.T01:CDS | 70.0% |
ACCGCTCCCCGCCGTGTCCT+CGG | - | Chr8:70210745-70210764 | MsG0880046179.01.T01:CDS | 75.0% | |
CGCCGCGGCGACGGTGTTCT+TGG | - | Chr8:70210901-70210920 | MsG0880046179.01.T01:CDS | 75.0% | |
CGGCGGGGAGCGGTGGTTGA+CGG | + | Chr8:70210739-70210758 | None:intergenic | 75.0% | |
CGGGGAGCGGTGGTTGACGG+TGG | + | Chr8:70210736-70210755 | None:intergenic | 75.0% | |
GAGTCGCCGAGGACACGGCG+GGG | + | Chr8:70210754-70210773 | None:intergenic | 75.0% | |
GTTCTCGTCACCGGCGCCGC+TGG | - | Chr8:70210844-70210863 | MsG0880046179.01.T01:CDS | 75.0% | |
! | GAGGACACGGCGGGGAGCGG+TGG | + | Chr8:70210746-70210765 | None:intergenic | 80.0% |
! | GCCGAGGACACGGCGGGGAG+CGG | + | Chr8:70210749-70210768 | None:intergenic | 80.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr8 | gene | 70210676 | 70211872 | 70210676 | ID=MsG0880046179.01;Name=MsG0880046179.01 |
Chr8 | mRNA | 70210676 | 70211872 | 70210676 | ID=MsG0880046179.01.T01;Parent=MsG0880046179.01;Name=MsG0880046179.01.T01;_AED=0.42;_eAED=0.42;_QI=0|-1|0|1|-1|1|1|0|398 |
Chr8 | exon | 70210676 | 70211872 | 70210676 | ID=MsG0880046179.01.T01:exon:27458;Parent=MsG0880046179.01.T01 |
Chr8 | CDS | 70210676 | 70211872 | 70210676 | ID=MsG0880046179.01.T01:cds;Parent=MsG0880046179.01.T01 |
Gene Sequence |
Protein sequence |