AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880046179.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046179.01.T01 MTR_4g102270 97.975 395 8 0 4 398 42 436 0.0 790
MsG0880046179.01.T01 MTR_5g011940 79.730 370 70 2 20 387 56 422 0.0 611
MsG0880046179.01.T01 MTR_0354s0040 76.378 381 87 2 10 389 38 416 0.0 602
MsG0880046179.01.T01 MTR_4g024600 74.803 381 95 1 10 389 55 435 0.0 594
MsG0880046179.01.T01 MTR_3g084090 69.351 385 111 1 9 386 46 430 0.0 553
MsG0880046179.01.T01 MTR_4g129820 71.547 362 103 0 28 389 68 429 0.0 548
MsG0880046179.01.T01 MTR_2g032100 27.401 354 217 13 50 381 66 401 4.75e-25 106
MsG0880046179.01.T01 MTR_8g099535 28.775 351 210 12 53 381 2 334 2.66e-23 100
MsG0880046179.01.T01 MTR_5g009170 27.714 350 213 12 54 381 46 377 6.92e-23 99.8
MsG0880046179.01.T01 MTR_8g089180 27.887 355 214 14 50 381 66 401 1.67e-22 99.0
MsG0880046179.01.T01 MTR_8g089180 27.887 355 214 14 50 381 66 401 1.67e-22 99.0
MsG0880046179.01.T01 MTR_5g009160 27.887 355 208 13 53 381 2 334 4.86e-21 93.6
MsG0880046179.01.T01 MTR_2g073240 28.571 350 218 11 41 383 8 332 6.22e-20 92.4
MsG0880046179.01.T01 MTR_0034s0060 26.686 341 209 9 55 382 137 449 8.15e-20 92.0
MsG0880046179.01.T01 MTR_4g120030 26.741 359 221 11 23 375 79 401 1.41e-19 90.5
MsG0880046179.01.T01 MTR_1g009600 26.190 336 217 11 55 382 5 317 3.50e-19 90.1
MsG0880046179.01.T01 MTR_8g096880 27.666 347 221 11 53 381 4 338 4.55e-19 88.2
MsG0880046179.01.T01 MTR_4g063600 26.048 334 201 13 53 375 30 328 2.05e-18 86.3
MsG0880046179.01.T01 MTR_8g096880 27.566 341 199 11 53 366 4 323 1.22e-17 83.6
MsG0880046179.01.T01 MTR_4g063600 26.347 334 197 14 53 375 30 325 1.75e-17 83.2
MsG0880046179.01.T01 MTR_7g115080 23.885 381 243 13 19 384 3 351 3.41e-17 82.8
MsG0880046179.01.T01 MTR_2g032100 30.808 198 127 6 50 242 66 258 3.44e-17 82.0
MsG0880046179.01.T01 MTR_4g134490 26.075 372 229 15 35 381 7 357 5.84e-17 82.0
MsG0880046179.01.T01 MTR_7g115080 24.566 346 216 12 52 384 25 338 1.57e-16 80.9
MsG0880046179.01.T01 MTR_7g115080 24.566 346 216 12 52 384 59 372 2.26e-16 80.9
MsG0880046179.01.T01 MTR_1g080950 25.072 347 214 12 52 384 24 338 3.87e-16 79.7
MsG0880046179.01.T01 MTR_1g080950 25.072 347 214 12 52 384 60 374 4.45e-16 79.7
MsG0880046179.01.T01 MTR_1g088480 26.154 325 198 11 57 375 120 408 6.60e-16 79.3
MsG0880046179.01.T01 MTR_4g134490 26.331 357 217 15 35 366 7 342 1.33e-15 78.2
MsG0880046179.01.T01 MTR_2g096660 25.449 334 203 13 53 375 36 334 1.87e-14 74.3
MsG0880046179.01.T01 MTR_8g096880 27.541 305 174 10 53 330 4 288 7.49e-14 72.0
MsG0880046179.01.T01 MTR_4g101940 90.000 30 3 0 127 156 42 71 3.82e-13 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046179.01.T01 AT4G12250 79.587 387 67 4 19 398 55 436 0.0 602
MsG0880046179.01.T01 AT1G02000 72.911 395 107 0 3 397 40 434 0.0 601
MsG0880046179.01.T01 AT4G00110 76.579 380 84 2 17 396 56 430 0.0 600
MsG0880046179.01.T01 AT2G45310 78.492 358 75 2 32 387 72 429 0.0 587
MsG0880046179.01.T01 AT3G23820 73.295 352 94 0 35 386 92 443 0.0 553
MsG0880046179.01.T01 AT4G30440 72.423 359 99 0 28 386 61 419 0.0 520
MsG0880046179.01.T01 AT1G30620 29.213 356 210 15 49 381 64 400 4.27e-24 103
MsG0880046179.01.T01 AT1G30620 28.732 355 213 14 49 381 65 401 4.31e-24 103
MsG0880046179.01.T01 AT1G30620 28.732 355 213 14 49 381 65 401 4.31e-24 103
MsG0880046179.01.T01 AT1G30620 28.732 355 213 14 49 381 65 401 4.31e-24 103
MsG0880046179.01.T01 AT1G30620 28.732 355 213 14 49 381 65 401 4.31e-24 103
MsG0880046179.01.T01 AT4G23920 27.887 355 204 14 55 381 3 333 2.80e-22 97.4
MsG0880046179.01.T01 AT3G14790 27.679 336 216 9 55 384 7 321 1.68e-21 97.1
MsG0880046179.01.T01 AT3G14790 27.679 336 216 9 55 384 10 324 1.85e-21 97.1
MsG0880046179.01.T01 AT4G10960 27.479 353 204 14 57 381 6 334 6.32e-21 93.6
MsG0880046179.01.T01 AT1G12780 27.378 347 214 12 57 381 9 339 9.65e-21 92.8
MsG0880046179.01.T01 AT4G20460 27.168 346 214 12 57 381 72 400 1.83e-20 92.8
MsG0880046179.01.T01 AT5G44480 28.065 310 190 10 57 348 73 367 2.72e-20 92.4
MsG0880046179.01.T01 AT5G44480 28.065 310 190 10 57 348 73 367 2.72e-20 92.4
MsG0880046179.01.T01 AT5G44480 28.065 310 190 10 57 348 73 367 2.72e-20 92.4
MsG0880046179.01.T01 AT5G44480 28.065 310 190 10 57 348 97 391 3.76e-20 92.0
MsG0880046179.01.T01 AT1G78570 27.300 337 216 10 55 384 7 321 6.60e-20 92.4
MsG0880046179.01.T01 AT1G64440 26.225 347 216 11 57 381 5 333 1.28e-18 86.7
MsG0880046179.01.T01 AT3G53520 25.532 329 208 8 57 379 122 419 3.20e-18 86.7
MsG0880046179.01.T01 AT1G53500 26.488 336 220 9 55 384 9 323 3.51e-18 87.0
MsG0880046179.01.T01 AT1G30620 30.102 196 133 3 49 242 65 258 4.76e-18 84.3
MsG0880046179.01.T01 AT2G47650 25.758 330 208 10 57 380 123 421 1.44e-17 84.7
MsG0880046179.01.T01 AT3G62830 25.455 330 209 10 57 380 121 419 5.62e-17 82.8
MsG0880046179.01.T01 AT3G62830 25.455 330 209 10 57 380 121 419 5.62e-17 82.8
MsG0880046179.01.T01 AT2G28760 26.048 334 201 13 53 375 29 327 1.09e-16 81.3
MsG0880046179.01.T01 AT2G28760 26.048 334 201 13 53 375 29 327 1.09e-16 81.3
MsG0880046179.01.T01 AT2G28760 26.048 334 201 13 53 375 29 327 1.09e-16 81.3
MsG0880046179.01.T01 AT2G28760 26.866 335 197 14 53 375 60 358 1.74e-16 80.9
MsG0880046179.01.T01 AT3G53520 25.146 342 216 12 57 379 122 442 4.06e-16 80.1
MsG0880046179.01.T01 AT3G53520 25.228 329 207 9 57 379 122 417 6.16e-16 79.7
MsG0880046179.01.T01 AT2G47650 25.298 336 208 11 57 380 123 427 1.69e-15 78.2
MsG0880046179.01.T01 AT3G53520 28.085 235 147 6 57 285 122 340 1.14e-14 75.1
MsG0880046179.01.T01 AT5G28840 24.784 347 215 13 52 384 24 338 1.11e-13 72.4
MsG0880046179.01.T01 AT5G28840 24.784 347 215 13 52 384 24 338 1.11e-13 72.4

Find 107 sgRNAs with CRISPR-Local

Find 132 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAAGGTTCAGCTCAATTT+AGG 0.159068 8:-70210946 MsG0880046179.01.T01:CDS
GAGTAAACTTGTTGCTATTT+TGG 0.221911 8:-70210888 MsG0880046179.01.T01:CDS
CGCCGCGGCGACGGTGTTCT+TGG 0.251675 8:-70211625 MsG0880046179.01.T01:CDS
AGTTTGGCTCAGAGGGAATT+TGG 0.257449 8:-70210782 MsG0880046179.01.T01:CDS
ACTCATGGGGCGGTTCTCAC+TGG 0.270005 8:-70211756 MsG0880046179.01.T01:CDS
CCTACCATTGATTTGGAAAC+AGG 0.274005 8:-70210752 MsG0880046179.01.T01:CDS
CACTCATGCTAATATTAGTT+TGG 0.274183 8:-70210798 MsG0880046179.01.T01:CDS
TAAGGGTTGTTTAGGGGCTT+TGG 0.289137 8:-70211005 MsG0880046179.01.T01:CDS
TTATAAACCTACCATTGATT+TGG 0.301993 8:-70210759 MsG0880046179.01.T01:CDS
GCCGTGTCCTCGGCGACTCA+TGG 0.311385 8:-70211771 MsG0880046179.01.T01:CDS
ATCCTCAACCAGCAATTGTT+TGG 0.315783 8:-70211339 MsG0880046179.01.T01:CDS
TTTCACTGTTTATGGGCCTT+GGG 0.318910 8:-70211152 MsG0880046179.01.T01:CDS
TTGCTGTGAACGTATGAGTT+AGG 0.332218 8:+70211406 None:intergenic
GATGTTGTTAAGGGTTGTTT+AGG 0.332876 8:-70211013 MsG0880046179.01.T01:CDS
GCGGTGGTTGACGGTGGTGG+AGG 0.337677 8:+70211799 None:intergenic
ATGTTGTTAAGGGTTGTTTA+GGG 0.346777 8:-70211012 MsG0880046179.01.T01:CDS
TTACATTGATGATGTTGTTA+AGG 0.348766 8:-70211023 MsG0880046179.01.T01:CDS
GAAAGGTTCAGCTCAATTTA+GGG 0.354757 8:-70210945 MsG0880046179.01.T01:CDS
GCTTCGTCTAGCTCCGTTTA+CGG 0.358151 8:-70211316 MsG0880046179.01.T01:CDS
GGAGCGGTGGTTGACGGTGG+TGG 0.375711 8:+70211796 None:intergenic
AAGAAGAAATACGCCATATC+AGG 0.377171 8:+70211124 None:intergenic
TCCTCAACCAGCAATTGTTT+GGG 0.378763 8:-70211338 MsG0880046179.01.T01:CDS
AACAAAATTGTTCTCGTCAC+CGG 0.383309 8:-70211691 MsG0880046179.01.T01:CDS
GACGAAGCCCAAACAATTGC+TGG 0.388048 8:+70211331 None:intergenic
AATTTAACATCGCCGTTTCT+CGG 0.391354 8:+70210821 None:intergenic
GCCTTGGGGAAGGCCTGATA+TGG 0.395198 8:-70211137 MsG0880046179.01.T01:CDS
GTTCTCGTCACCGGCGCCGC+TGG 0.402134 8:-70211682 MsG0880046179.01.T01:CDS
CCGTGTCCTCGGCGACTCAT+GGG 0.405721 8:-70211770 MsG0880046179.01.T01:CDS
TACATTGATGATGTTGTTAA+GGG 0.405786 8:-70211022 MsG0880046179.01.T01:CDS
GCCGCGGCGACGGTGTTCTT+GGG 0.412962 8:-70211624 MsG0880046179.01.T01:CDS
CTGTTTATGGGCCTTGGGGA+AGG 0.414134 8:-70211147 MsG0880046179.01.T01:CDS
CTTTGAATTCAATCCGTAAA+CGG 0.421136 8:+70211303 None:intergenic
ACCGCTCCCCGCCGTGTCCT+CGG 0.431799 8:-70211781 MsG0880046179.01.T01:CDS
TTGTTTAGGGGCTTTGGATA+CGG 0.432645 8:-70210999 MsG0880046179.01.T01:CDS
TGCTGTGAACGTATGAGTTA+GGG 0.436331 8:+70211407 None:intergenic
GTTCGATCTTTCTCCGAAAA+CGG 0.440370 8:+70211277 None:intergenic
AGATGCATCACGTGCGTAAA+CGG 0.440902 8:+70211466 None:intergenic
GCCGAGGACACGGCGGGGAG+CGG 0.442287 8:+70211780 None:intergenic
CGGCGGGGAGCGGTGGTTGA+CGG 0.442614 8:+70211790 None:intergenic
CTCATGGGGCGGTTCTCACT+GGG 0.460900 8:-70211755 MsG0880046179.01.T01:CDS
CGGTGGTTGACGGTGGTGGA+GGG 0.463319 8:+70211800 None:intergenic
ACAAGTTTACTCACAGGAAC+AGG 0.469679 8:+70210899 None:intergenic
TTCTTCTGGGTCTATCAAGA+AGG 0.474036 8:-70210693 MsG0880046179.01.T01:CDS
CGGTGGTGGAGGGTTGAAAG+TGG 0.475360 8:+70211810 None:intergenic
ACCTTCCACCACGAAAATTC+CGG 0.482326 8:+70211534 None:intergenic
GAGGACACGGCGGGGAGCGG+TGG 0.492372 8:+70211783 None:intergenic
GAAAGATCGAACAGACCAAC+CGG 0.494796 8:-70211266 MsG0880046179.01.T01:CDS
GCCCAAACAATTGCTGGTTG+AGG 0.496033 8:+70211337 None:intergenic
ATGCATCTCGCGGCACAAGC+TGG 0.496414 8:-70211451 MsG0880046179.01.T01:CDS
TCAAGAAGGGATCTTCATCT+TGG 0.498221 8:-70210679 MsG0880046179.01.T01:CDS
ACCGGCGCCGCTGGTTTCGT+CGG 0.501707 8:-70211673 MsG0880046179.01.T01:CDS
CATACTTATAATCATATCTA+CGG 0.505938 8:-70211199 MsG0880046179.01.T01:CDS
TCCGACGAAACCAGCGGCGC+CGG 0.507719 8:+70211672 None:intergenic
TTGGGATTGATAATTTCAAT+CGG 0.514397 8:-70211606 MsG0880046179.01.T01:CDS
CGGGGAGCGGTGGTTGACGG+TGG 0.514771 8:+70211793 None:intergenic
CTAGCCACTGATCCACCATC+TGG 0.517087 8:+70211055 None:intergenic
GTTGGATGGCGAATTCCGGC+GGG 0.517720 8:+70211711 None:intergenic
CAACCCTGTTTCCAAATCAA+TGG 0.519312 8:+70210748 None:intergenic
CCTGTTTCCAAATCAATGGT+AGG 0.525130 8:+70210752 None:intergenic
CCCATGAGTCGCCGAGGACA+CGG 0.525492 8:+70211770 None:intergenic
TAATATTAGTTTGGCTCAGA+GGG 0.528729 8:-70210789 MsG0880046179.01.T01:CDS
TGAGTCGCCGAGGACACGGC+GGG 0.542955 8:+70211774 None:intergenic
GTGCTTCCTATGCCGAGAAA+CGG 0.545248 8:-70210833 MsG0880046179.01.T01:CDS
TGTTGGATGGCGAATTCCGG+CGG 0.548138 8:+70211710 None:intergenic
CGTTTACGGATTGAATTCAA+AGG 0.552246 8:-70211302 MsG0880046179.01.T01:CDS
GGGAGTGGTGGGAAGAAGAA+AGG 0.552440 8:-70210962 MsG0880046179.01.T01:CDS
TTGATTTGGAAACAGGGTTG+AGG 0.555240 8:-70210745 MsG0880046179.01.T01:CDS
TTCACTGTTTATGGGCCTTG+GGG 0.556043 8:-70211151 MsG0880046179.01.T01:CDS
GCTTTAAAACGCCGCGGCGA+CGG 0.557114 8:-70211634 MsG0880046179.01.T01:CDS
TACGTTCACAGCAACCTCGC+TGG 0.557251 8:-70211397 MsG0880046179.01.T01:CDS
ACATCGCCGTTTCTCGGCAT+AGG 0.558905 8:+70210827 None:intergenic
TCTTCTGGGTCTATCAAGAA+GGG 0.561694 8:-70210692 MsG0880046179.01.T01:CDS
CAGATGGTGGATCAGTGGCT+AGG 0.561872 8:-70211054 MsG0880046179.01.T01:CDS
CTACCATTGATTTGGAAACA+GGG 0.564836 8:-70210751 MsG0880046179.01.T01:CDS
ATACTTATAATCATATCTAC+GGG 0.564967 8:-70211198 MsG0880046179.01.T01:CDS
AGATGGTGGATCAGTGGCTA+GGG 0.569033 8:-70211053 MsG0880046179.01.T01:CDS
TGTTGTTAAGGGTTGTTTAG+GGG 0.574733 8:-70211011 MsG0880046179.01.T01:CDS
CTAATATTAGTTTGGCTCAG+AGG 0.575459 8:-70210790 MsG0880046179.01.T01:CDS
AGTATGCGCAATTCCTTCGC+CGG 0.580214 8:+70211216 None:intergenic
GCAACGAAGAAAGCCGGCGA+AGG 0.586493 8:-70211229 MsG0880046179.01.T01:CDS
CTGCATAGAGACTCGCCGGT+TGG 0.586709 8:+70211251 None:intergenic
GGCGTATTTCTTCTTCACAA+AGG 0.587530 8:-70211116 MsG0880046179.01.T01:CDS
GTGGAGAATAAAAGAAAACA+AGG 0.600754 8:+70211829 None:intergenic
GGTTGAGGAAGTTTGTGAAG+TGG 0.606221 8:-70210730 MsG0880046179.01.T01:CDS
TTTGCAAGCTTCTAGAAGAA+CGG 0.606850 8:+70211369 None:intergenic
TATGCAGCAACGAAGAAAGC+CGG 0.608050 8:-70211235 MsG0880046179.01.T01:CDS
CGTGTCCTCGGCGACTCATG+GGG 0.609532 8:-70211769 MsG0880046179.01.T01:CDS
GTTGCTGCATAGAGACTCGC+CGG 0.612614 8:+70211247 None:intergenic
ATCACCAGATGGTGGATCAG+TGG 0.618132 8:-70211059 MsG0880046179.01.T01:CDS
AAAAGAGTACTGGGAGTGGT+GGG 0.619132 8:-70210973 MsG0880046179.01.T01:CDS
ATAAAAGAAAACAAGGAAAG+CGG 0.626199 8:+70211836 None:intergenic
ATAGCAACAAGTTTACTCAC+AGG 0.630845 8:+70210893 None:intergenic
GTCCTCGGCGACTCATGGGG+CGG 0.631889 8:-70211766 MsG0880046179.01.T01:CDS
GCCATATCAGGCCTTCCCCA+AGG 0.633575 8:+70211136 None:intergenic
TCCCAAGAACACCGTCGCCG+CGG 0.635756 8:+70211623 None:intergenic
TTGTATCGAAATCAGCCCGC+CGG 0.643781 8:-70211726 MsG0880046179.01.T01:CDS
CAGAAGCTTCTAGAACGCGC+CGG 0.650652 8:-70211553 MsG0880046179.01.T01:CDS
GTGTTTGAATCACCAGATGG+TGG 0.651163 8:-70211067 MsG0880046179.01.T01:CDS
AACCGCCCCATGAGTCGCCG+AGG 0.656081 8:+70211764 None:intergenic
ACAGTGTTTGAATCACCAGA+TGG 0.668888 8:-70211070 MsG0880046179.01.T01:CDS
TACGCACGTGATGCATCTCG+CGG 0.672266 8:-70211461 MsG0880046179.01.T01:CDS
ATGACTTCCGACGAAACCAG+CGG 0.676900 8:+70211666 None:intergenic
ATGAGTCGCCGAGGACACGG+CGG 0.728360 8:+70211773 None:intergenic
GAGTCGCCGAGGACACGGCG+GGG 0.730514 8:+70211775 None:intergenic
GTGGAAGGTGACATCAACGA+CGG 0.748007 8:-70211520 MsG0880046179.01.T01:CDS
GAAGAACGGTGAAACCAGCG+AGG 0.752594 8:+70211383 None:intergenic
GCACTCGCTTTAAAACGCCG+CGG 0.776540 8:-70211640 MsG0880046179.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATACTTATAATCATATCTAC+GGG - Chr8:70211328-70211347 MsG0880046179.01.T01:CDS 20.0%
!! CATACTTATAATCATATCTA+CGG - Chr8:70211327-70211346 MsG0880046179.01.T01:CDS 20.0%
! ATAAAAGAAAACAAGGAAAG+CGG + Chr8:70210693-70210712 None:intergenic 25.0%
!! TTATAAACCTACCATTGATT+TGG - Chr8:70211767-70211786 MsG0880046179.01.T01:CDS 25.0%
!! TTGGGATTGATAATTTCAAT+CGG - Chr8:70210920-70210939 MsG0880046179.01.T01:CDS 25.0%
!!! AATTTAGGGTTTTCAATTTG+GGG - Chr8:70211595-70211614 MsG0880046179.01.T01:CDS 25.0%
!!! ATCTTGAGTTTTATTCTTCT+GGG - Chr8:70211820-70211839 MsG0880046179.01.T01:CDS 25.0%
!!! CAATTTAGGGTTTTCAATTT+GGG - Chr8:70211594-70211613 MsG0880046179.01.T01:CDS 25.0%
!!! TACATTGATGATGTTGTTAA+GGG - Chr8:70211504-70211523 MsG0880046179.01.T01:CDS 25.0%
!!! TATCTTGAGTTTTATTCTTC+TGG - Chr8:70211819-70211838 MsG0880046179.01.T01:CDS 25.0%
!!! TCAATTTAGGGTTTTCAATT+TGG - Chr8:70211593-70211612 MsG0880046179.01.T01:CDS 25.0%
!!! TTACATTGATGATGTTGTTA+AGG - Chr8:70211503-70211522 MsG0880046179.01.T01:CDS 25.0%
!!! TTCACAAAGGATATTTTGAA+GGG - Chr8:70211423-70211442 MsG0880046179.01.T01:CDS 25.0%
ATGTTGTTAAGGGTTGTTTA+GGG - Chr8:70211514-70211533 MsG0880046179.01.T01:CDS 30.0%
CACTCATGCTAATATTAGTT+TGG - Chr8:70211728-70211747 MsG0880046179.01.T01:CDS 30.0%
CTTTGAATTCAATCCGTAAA+CGG + Chr8:70211226-70211245 None:intergenic 30.0%
GTGGAGAATAAAAGAAAACA+AGG + Chr8:70210700-70210719 None:intergenic 30.0%
! TAATATTAGTTTGGCTCAGA+GGG - Chr8:70211737-70211756 MsG0880046179.01.T01:CDS 30.0%
! TGCGATTTTTCACTGTTTAT+GGG - Chr8:70211367-70211386 MsG0880046179.01.T01:CDS 30.0%
! TTGCGATTTTTCACTGTTTA+TGG - Chr8:70211366-70211385 MsG0880046179.01.T01:CDS 30.0%
!! CTTCACAAAGGATATTTTGA+AGG - Chr8:70211422-70211441 MsG0880046179.01.T01:CDS 30.0%
!! TATTTTGGAGAAGCTTTTGA+AGG - Chr8:70211653-70211672 MsG0880046179.01.T01:CDS 30.0%
!! TCACAAAGGATATTTTGAAG+GGG - Chr8:70211424-70211443 MsG0880046179.01.T01:CDS 30.0%
!!! GAGTAAACTTGTTGCTATTT+TGG - Chr8:70211638-70211657 MsG0880046179.01.T01:CDS 30.0%
AACAAAATTGTTCTCGTCAC+CGG - Chr8:70210835-70210854 MsG0880046179.01.T01:CDS 35.0%
AAGAAGAAATACGCCATATC+AGG + Chr8:70211405-70211424 None:intergenic 35.0%
AATTTAACATCGCCGTTTCT+CGG + Chr8:70211708-70211727 None:intergenic 35.0%
AGAAAGGTTCAGCTCAATTT+AGG - Chr8:70211580-70211599 MsG0880046179.01.T01:CDS 35.0%
ATAGCAACAAGTTTACTCAC+AGG + Chr8:70211636-70211655 None:intergenic 35.0%
GAAAGGTTCAGCTCAATTTA+GGG - Chr8:70211581-70211600 MsG0880046179.01.T01:CDS 35.0%
GATGTTGTTAAGGGTTGTTT+AGG - Chr8:70211513-70211532 MsG0880046179.01.T01:CDS 35.0%
TGTTGTTAAGGGTTGTTTAG+GGG - Chr8:70211515-70211534 MsG0880046179.01.T01:CDS 35.0%
! ACGAGAACAATTTTGTTGGA+TGG + Chr8:70210832-70210851 None:intergenic 35.0%
! CGTTTACGGATTGAATTCAA+AGG - Chr8:70211224-70211243 MsG0880046179.01.T01:CDS 35.0%
! CTAATATTAGTTTGGCTCAG+AGG - Chr8:70211736-70211755 MsG0880046179.01.T01:CDS 35.0%
! GAATTCAAAGGTTCCGTTTT+CGG - Chr8:70211236-70211255 MsG0880046179.01.T01:CDS 35.0%
! TTTGCAAGCTTCTAGAAGAA+CGG + Chr8:70211160-70211179 None:intergenic 35.0%
!! CTACCATTGATTTGGAAACA+GGG - Chr8:70211775-70211794 MsG0880046179.01.T01:CDS 35.0%
ACAAGTTTACTCACAGGAAC+AGG + Chr8:70211630-70211649 None:intergenic 40.0%
ACAGTGTTTGAATCACCAGA+TGG - Chr8:70211456-70211475 MsG0880046179.01.T01:CDS 40.0%
ATCCTCAACCAGCAATTGTT+TGG - Chr8:70211187-70211206 MsG0880046179.01.T01:CDS 40.0%
CAACCCTGTTTCCAAATCAA+TGG + Chr8:70211781-70211800 None:intergenic 40.0%
CCTGTTTCCAAATCAATGGT+AGG + Chr8:70211777-70211796 None:intergenic 40.0%
GGCGTATTTCTTCTTCACAA+AGG - Chr8:70211410-70211429 MsG0880046179.01.T01:CDS 40.0%
GTTCGATCTTTCTCCGAAAA+CGG + Chr8:70211252-70211271 None:intergenic 40.0%
TCAAGAAGGGATCTTCATCT+TGG - Chr8:70211847-70211866 MsG0880046179.01.T01:CDS 40.0%
TCCTCAACCAGCAATTGTTT+GGG - Chr8:70211188-70211207 MsG0880046179.01.T01:CDS 40.0%
TCTTCTGGGTCTATCAAGAA+GGG - Chr8:70211834-70211853 MsG0880046179.01.T01:CDS 40.0%
TGCTGTGAACGTATGAGTTA+GGG + Chr8:70211122-70211141 None:intergenic 40.0%
TTCTTCTGGGTCTATCAAGA+AGG - Chr8:70211833-70211852 MsG0880046179.01.T01:CDS 40.0%
TTGCTGTGAACGTATGAGTT+AGG + Chr8:70211123-70211142 None:intergenic 40.0%
TTTCACTGTTTATGGGCCTT+GGG - Chr8:70211374-70211393 MsG0880046179.01.T01:CDS 40.0%
! GGTGACGAGAACAATTTTGT+TGG + Chr8:70210836-70210855 None:intergenic 40.0%
! TCTCAAGAAGCTTTTCGATG+TGG - Chr8:70211035-70211054 MsG0880046179.01.T01:CDS 40.0%
! TTTTCACTGTTTATGGGCCT+TGG - Chr8:70211373-70211392 MsG0880046179.01.T01:CDS 40.0%
! TTTTGTTGGATGGCGAATTC+CGG + Chr8:70210822-70210841 None:intergenic 40.0%
!! ATACGGCGAAAAAGAGTACT+GGG - Chr8:70211544-70211563 MsG0880046179.01.T01:CDS 40.0%
!! CCTACCATTGATTTGGAAAC+AGG - Chr8:70211774-70211793 MsG0880046179.01.T01:CDS 40.0%
!! TTGATTTGGAAACAGGGTTG+AGG - Chr8:70211781-70211800 MsG0880046179.01.T01:CDS 40.0%
!! TTGTTTAGGGGCTTTGGATA+CGG - Chr8:70211527-70211546 MsG0880046179.01.T01:CDS 40.0%
ACCTTCCACCACGAAAATTC+CGG + Chr8:70210995-70211014 None:intergenic 45.0%
AGATGCATCACGTGCGTAAA+CGG + Chr8:70211063-70211082 None:intergenic 45.0%
GAAAGATCGAACAGACCAAC+CGG - Chr8:70211260-70211279 MsG0880046179.01.T01:CDS 45.0%
GGTTGAGGAAGTTTGTGAAG+TGG - Chr8:70211796-70211815 MsG0880046179.01.T01:CDS 45.0%
GTGTTTGAATCACCAGATGG+TGG - Chr8:70211459-70211478 MsG0880046179.01.T01:CDS 45.0%
TAAGGGTTGTTTAGGGGCTT+TGG - Chr8:70211521-70211540 MsG0880046179.01.T01:CDS 45.0%
TATGCAGCAACGAAGAAAGC+CGG - Chr8:70211291-70211310 MsG0880046179.01.T01:CDS 45.0%
TTCACTGTTTATGGGCCTTG+GGG - Chr8:70211375-70211394 MsG0880046179.01.T01:CDS 45.0%
! AGTTTGGCTCAGAGGGAATT+TGG - Chr8:70211744-70211763 MsG0880046179.01.T01:CDS 45.0%
! GATACGGCGAAAAAGAGTAC+TGG - Chr8:70211543-70211562 MsG0880046179.01.T01:CDS 45.0%
!! AAAAAGAGTACTGGGAGTGG+TGG - Chr8:70211552-70211571 MsG0880046179.01.T01:CDS 45.0%
!! AAAAGAGTACTGGGAGTGGT+GGG - Chr8:70211553-70211572 MsG0880046179.01.T01:CDS 45.0%
AGTATGCGCAATTCCTTCGC+CGG + Chr8:70211313-70211332 None:intergenic 50.0%
ATGACTTCCGACGAAACCAG+CGG + Chr8:70210863-70210882 None:intergenic 50.0%
GACGAAGCCCAAACAATTGC+TGG + Chr8:70211198-70211217 None:intergenic 50.0%
GTGCTTCCTATGCCGAGAAA+CGG - Chr8:70211693-70211712 MsG0880046179.01.T01:CDS 50.0%
GTGGAAGGTGACATCAACGA+CGG - Chr8:70211006-70211025 MsG0880046179.01.T01:CDS 50.0%
TTGTATCGAAATCAGCCCGC+CGG - Chr8:70210800-70210819 MsG0880046179.01.T01:CDS 50.0%
! GCCCAAACAATTGCTGGTTG+AGG + Chr8:70211192-70211211 None:intergenic 50.0%
! GCTTCGTCTAGCTCCGTTTA+CGG - Chr8:70211210-70211229 MsG0880046179.01.T01:CDS 50.0%
! GCTTCTGACGAGCGTGTTTT+AGG + Chr8:70210960-70210979 None:intergenic 50.0%
!! AGATGGTGGATCAGTGGCTA+GGG - Chr8:70211473-70211492 MsG0880046179.01.T01:CDS 50.0%
!! ATCACCAGATGGTGGATCAG+TGG - Chr8:70211467-70211486 MsG0880046179.01.T01:CDS 50.0%
!! GCGAAAAAGAGTACTGGGAG+TGG - Chr8:70211549-70211568 MsG0880046179.01.T01:CDS 50.0%
ACATCGCCGTTTCTCGGCAT+AGG + Chr8:70211702-70211721 None:intergenic 55.0%
CTAGCCACTGATCCACCATC+TGG + Chr8:70211474-70211493 None:intergenic 55.0%
CTGTTTATGGGCCTTGGGGA+AGG - Chr8:70211379-70211398 MsG0880046179.01.T01:CDS 55.0%
GAAGAACGGTGAAACCAGCG+AGG + Chr8:70211146-70211165 None:intergenic 55.0%
GTTGCTGCATAGAGACTCGC+CGG + Chr8:70211282-70211301 None:intergenic 55.0%
TACGCACGTGATGCATCTCG+CGG - Chr8:70211065-70211084 MsG0880046179.01.T01:CDS 55.0%
TACGTTCACAGCAACCTCGC+TGG - Chr8:70211129-70211148 MsG0880046179.01.T01:CDS 55.0%
TGTTGGATGGCGAATTCCGG+CGG + Chr8:70210819-70210838 None:intergenic 55.0%
! AGAACGCGCCGGAATTTTCG+TGG - Chr8:70210984-70211003 MsG0880046179.01.T01:CDS 55.0%
! GGGAGTGGTGGGAAGAAGAA+AGG - Chr8:70211564-70211583 MsG0880046179.01.T01:CDS 55.0%
!! CAGAAGCTTCTAGAACGCGC+CGG - Chr8:70210973-70210992 MsG0880046179.01.T01:CDS 55.0%
!! CAGATGGTGGATCAGTGGCT+AGG - Chr8:70211472-70211491 MsG0880046179.01.T01:CDS 55.0%
!! GCACTCGCTTTAAAACGCCG+CGG - Chr8:70210886-70210905 MsG0880046179.01.T01:CDS 55.0%
!! GCCGGAATTTTCGTGGTGGA+AGG - Chr8:70210991-70211010 MsG0880046179.01.T01:CDS 55.0%
ACTCATGGGGCGGTTCTCAC+TGG - Chr8:70210770-70210789 MsG0880046179.01.T01:CDS 60.0%
ATGCATCTCGCGGCACAAGC+TGG - Chr8:70211075-70211094 MsG0880046179.01.T01:CDS 60.0%
CTCATGGGGCGGTTCTCACT+GGG - Chr8:70210771-70210790 MsG0880046179.01.T01:CDS 60.0%
CTGCATAGAGACTCGCCGGT+TGG + Chr8:70211278-70211297 None:intergenic 60.0%
GCAACGAAGAAAGCCGGCGA+AGG - Chr8:70211297-70211316 MsG0880046179.01.T01:CDS 60.0%
GCCATATCAGGCCTTCCCCA+AGG + Chr8:70211393-70211412 None:intergenic 60.0%
GCCTTGGGGAAGGCCTGATA+TGG - Chr8:70211389-70211408 MsG0880046179.01.T01:CDS 60.0%
GTTGGATGGCGAATTCCGGC+GGG + Chr8:70210818-70210837 None:intergenic 60.0%
! ACGCGCCGGAATTTTCGTGG+TGG - Chr8:70210987-70211006 MsG0880046179.01.T01:CDS 60.0%
!! CGGTGGTGGAGGGTTGAAAG+TGG + Chr8:70210719-70210738 None:intergenic 60.0%
!! GCTTTAAAACGCCGCGGCGA+CGG - Chr8:70210892-70210911 MsG0880046179.01.T01:CDS 60.0%
ATGAGTCGCCGAGGACACGG+CGG + Chr8:70210756-70210775 None:intergenic 65.0%
CCCATGAGTCGCCGAGGACA+CGG + Chr8:70210759-70210778 None:intergenic 65.0%
CCGTGTCCTCGGCGACTCAT+GGG - Chr8:70210756-70210775 MsG0880046179.01.T01:CDS 65.0%
CGTGTCCTCGGCGACTCATG+GGG - Chr8:70210757-70210776 MsG0880046179.01.T01:CDS 65.0%
TCCCAAGAACACCGTCGCCG+CGG + Chr8:70210906-70210925 None:intergenic 65.0%
!! CGGTGGTTGACGGTGGTGGA+GGG + Chr8:70210729-70210748 None:intergenic 65.0%
AACCGCCCCATGAGTCGCCG+AGG + Chr8:70210765-70210784 None:intergenic 70.0%
GCCGCGGCGACGGTGTTCTT+GGG - Chr8:70210902-70210921 MsG0880046179.01.T01:CDS 70.0%
GCCGTGTCCTCGGCGACTCA+TGG - Chr8:70210755-70210774 MsG0880046179.01.T01:CDS 70.0%
GGAGCGGTGGTTGACGGTGG+TGG + Chr8:70210733-70210752 None:intergenic 70.0%
GTCCTCGGCGACTCATGGGG+CGG - Chr8:70210760-70210779 MsG0880046179.01.T01:CDS 70.0%
TCCGACGAAACCAGCGGCGC+CGG + Chr8:70210857-70210876 None:intergenic 70.0%
TGAGTCGCCGAGGACACGGC+GGG + Chr8:70210755-70210774 None:intergenic 70.0%
! GCGGTGGTTGACGGTGGTGG+AGG + Chr8:70210730-70210749 None:intergenic 70.0%
!! ACCGGCGCCGCTGGTTTCGT+CGG - Chr8:70210853-70210872 MsG0880046179.01.T01:CDS 70.0%
ACCGCTCCCCGCCGTGTCCT+CGG - Chr8:70210745-70210764 MsG0880046179.01.T01:CDS 75.0%
CGCCGCGGCGACGGTGTTCT+TGG - Chr8:70210901-70210920 MsG0880046179.01.T01:CDS 75.0%
CGGCGGGGAGCGGTGGTTGA+CGG + Chr8:70210739-70210758 None:intergenic 75.0%
CGGGGAGCGGTGGTTGACGG+TGG + Chr8:70210736-70210755 None:intergenic 75.0%
GAGTCGCCGAGGACACGGCG+GGG + Chr8:70210754-70210773 None:intergenic 75.0%
GTTCTCGTCACCGGCGCCGC+TGG - Chr8:70210844-70210863 MsG0880046179.01.T01:CDS 75.0%
! GAGGACACGGCGGGGAGCGG+TGG + Chr8:70210746-70210765 None:intergenic 80.0%
! GCCGAGGACACGGCGGGGAG+CGG + Chr8:70210749-70210768 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
Chr8 gene 70210676 70211872 70210676 ID=MsG0880046179.01;Name=MsG0880046179.01
Chr8 mRNA 70210676 70211872 70210676 ID=MsG0880046179.01.T01;Parent=MsG0880046179.01;Name=MsG0880046179.01.T01;_AED=0.42;_eAED=0.42;_QI=0|-1|0|1|-1|1|1|0|398
Chr8 exon 70210676 70211872 70210676 ID=MsG0880046179.01.T01:exon:27458;Parent=MsG0880046179.01.T01
Chr8 CDS 70210676 70211872 70210676 ID=MsG0880046179.01.T01:cds;Parent=MsG0880046179.01.T01
Gene Sequence

>MsG0880046179.01.T01

CTGCATTCTCTTATCCGCTTTCCTTGTTTTCTTTTATTCTCCACTTTCAACCCTCCACCACCGTCAACCACCGCTCCCCGCCGTGTCCTCGGCGACTCATGGGGCGGTTCTCACTGGGAACGTCTTGTATCGAAATCAGCCCGCCGGAATTCGCCATCCAACAAAATTGTTCTCGTCACCGGCGCCGCTGGTTTCGTCGGAAGTCATGTCGCACTCGCTTTAAAACGCCGCGGCGACGGTGTTCTTGGGATTGATAATTTCAATCGGTACTATGATGTTAACCTAAAACACGCTCGTCAGAAGCTTCTAGAACGCGCCGGAATTTTCGTGGTGGAAGGTGACATCAACGACGGTGCGCTTCTCAAGAAGCTTTTCGATGTGGTTCCGTTTACGCACGTGATGCATCTCGCGGCACAAGCTGGTGTTCGTTATGCTATGCAAAACCCTAACTCATACGTTCACAGCAACCTCGCTGGTTTCACCGTTCTTCTAGAAGCTTGCAAATCTGCAAATCCTCAACCAGCAATTGTTTGGGCTTCGTCTAGCTCCGTTTACGGATTGAATTCAAAGGTTCCGTTTTCGGAGAAAGATCGAACAGACCAACCGGCGAGTCTCTATGCAGCAACGAAGAAAGCCGGCGAAGGAATTGCGCATACTTATAATCATATCTACGGGCTTTCGATCACAGCGTTGCGATTTTTCACTGTTTATGGGCCTTGGGGAAGGCCTGATATGGCGTATTTCTTCTTCACAAAGGATATTTTGAAGGGGAAACAGATAACAGTGTTTGAATCACCAGATGGTGGATCAGTGGCTAGGGATTTTACTTACATTGATGATGTTGTTAAGGGTTGTTTAGGGGCTTTGGATACGGCGAAAAAGAGTACTGGGAGTGGTGGGAAGAAGAAAGGTTCAGCTCAATTTAGGGTTTTCAATTTGGGGAATACTTCACCTGTTCCTGTGAGTAAACTTGTTGCTATTTTGGAGAAGCTTTTGAAGGTTAATGCAAAGAAGAGAGTGCTTCCTATGCCGAGAAACGGCGATGTTAAATTCACTCATGCTAATATTAGTTTGGCTCAGAGGGAATTTGGTTATAAACCTACCATTGATTTGGAAACAGGGTTGAGGAAGTTTGTGAAGTGGTATCTTGAGTTTTATTCTTCTGGGTCTATCAAGAAGGGATCTTCATCTTGGTGA

Protein sequence

>MsG0880046179.01.T01

LHSLIRFPCFLLFSTFNPPPPSTTAPRRVLGDSWGGSHWERLVSKSARRNSPSNKIVLVTGAAGFVGSHVALALKRRGDGVLGIDNFNRYYDVNLKHARQKLLERAGIFVVEGDINDGALLKKLFDVVPFTHVMHLAAQAGVRYAMQNPNSYVHSNLAGFTVLLEACKSANPQPAIVWASSSSVYGLNSKVPFSEKDRTDQPASLYAATKKAGEGIAHTYNHIYGLSITALRFFTVYGPWGRPDMAYFFFTKDILKGKQITVFESPDGGSVARDFTYIDDVVKGCLGALDTAKKSTGSGGKKKGSAQFRVFNLGNTSPVPVSKLVAILEKLLKVNAKKRVLPMPRNGDVKFTHANISLAQREFGYKPTIDLETGLRKFVKWYLEFYSSGSIKKGSSSW*