AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880046301.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046301.01.T01 MTR_4g105140 72.671 322 37 5 34 354 135 406 5.87e-153 436
MsG0880046301.01.T01 MTR_2g062700 35.577 208 125 3 25 223 121 328 4.69e-35 131
MsG0880046301.01.T01 MTR_5g027710 44.578 83 44 2 260 340 18 100 3.08e-16 73.9
MsG0880046301.01.T01 MTR_5g007390 50.000 54 26 1 286 338 65 118 2.76e-12 63.5
MsG0880046301.01.T01 MTR_6g072515 49.123 57 28 1 286 341 45 101 5.09e-12 64.3
MsG0880046301.01.T01 MTR_3g077360 43.860 57 31 1 285 340 1 57 6.47e-12 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046301.01.T01 AT5G63100 67.391 184 57 3 38 219 140 322 1.69e-80 249
MsG0880046301.01.T01 AT5G44600 32.323 198 121 4 31 217 135 330 2.04e-27 110
MsG0880046301.01.T01 AT5G44590 32.547 212 126 5 21 217 125 334 6.27e-27 109
MsG0880046301.01.T01 AT5G44590 32.828 198 120 4 31 217 121 316 6.42e-27 109

Find 102 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAGATGTTATGTTGATTTA+TGG 0.142033 8:+71685921 MsG0880046301.01.T01:CDS
CCAGGACCCATCGCTGTTCT+TGG 0.263256 8:+71685383 MsG0880046301.01.T01:CDS
GGATTATGGCTTATATTATA+TGG 0.292594 8:+71686957 MsG0880046301.01.T01:CDS
CAACCATGGACAACTGCATT+AGG 0.297401 8:-71685449 None:intergenic
GATAGTTCTCTTGCTCTTAC+AGG 0.308277 8:+71685851 MsG0880046301.01.T01:CDS
GGGTCCTGGGGTAGGATTGG+CGG 0.316318 8:-71685369 None:intergenic
TCATTAGGAGTGTTGGAGTT+GGG 0.319860 8:+71686907 MsG0880046301.01.T01:intron
CGTCGAAGTAAGTGTCTGTT+AGG 0.325570 8:-71685332 None:intergenic
GATTTATGGAGACCTTATTC+TGG 0.326852 8:+71685935 MsG0880046301.01.T01:CDS
CTACACTAAGTTGGAGCATT+TGG 0.342862 8:+71686582 MsG0880046301.01.T01:CDS
TTGTGTGGAGGCTGAGGATA+AGG 0.347033 8:+71685730 MsG0880046301.01.T01:CDS
ATAGAGTCCGGTATGGATTA+TGG 0.347452 8:+71686943 MsG0880046301.01.T01:CDS
GAGGGTAGCTCGGAGGAGTT+TGG 0.378269 8:+71687158 MsG0880046301.01.T01:CDS
AAATGCTTTAACAGCGAGTT+TGG 0.382006 8:+71685568 MsG0880046301.01.T01:CDS
GAAATGCTGTGGATGTTTCC+AGG 0.385061 8:-71685295 None:intergenic
CCAAGAACAGCGATGGGTCC+TGG 0.388560 8:-71685383 None:intergenic
TTGTGGCGAGAGGAGGAAAA+TGG 0.402385 8:+71686619 MsG0880046301.01.T01:CDS
ACATAACATCTCAATGAATT+CGG 0.402745 8:-71685911 None:intergenic
GAGAAAAGGTGGGAGGATAA+TGG 0.405973 8:+71685691 MsG0880046301.01.T01:CDS
TTCTTCCACGAATCAATATC+AGG 0.412758 8:-71685881 None:intergenic
ACCCTCACAAGGCAATCATT+TGG 0.427656 8:-71687141 None:intergenic
AACCATGGACAACTGCATTA+GGG 0.427676 8:-71685448 None:intergenic
CCCATCGCTGTTCTTGGCTT+CGG 0.428167 8:+71685389 MsG0880046301.01.T01:CDS
GTAAAACTTGAGGATGATAC+TGG 0.443683 8:-71685426 None:intergenic
CATTAGGAGTGTTGGAGTTG+GGG 0.446908 8:+71686908 MsG0880046301.01.T01:intron
GCTGAGGATAAGGGTAGAGA+TGG 0.448238 8:+71685740 MsG0880046301.01.T01:CDS
TTATATGGCATCCAACCAAT+TGG 0.451801 8:+71686972 MsG0880046301.01.T01:CDS
CAATTATACTAACCAGAATA+AGG 0.455165 8:-71685947 None:intergenic
GATGGGTCCTGGGGTAGGAT+TGG 0.457194 8:-71685372 None:intergenic
TTCATTAGGAGTGTTGGAGT+TGG 0.459461 8:+71686906 MsG0880046301.01.T01:intron
TTGCTTTCCACAAAACCAAT+TGG 0.462947 8:-71686987 None:intergenic
CACCATTCGTAGAGGCATGC+CGG 0.464261 8:-71687111 None:intergenic
TACCCTAATGCAGTTGTCCA+TGG 0.467274 8:+71685446 MsG0880046301.01.T01:CDS
GCTGTTCTTGGCTTCGGCGC+CGG 0.468119 8:+71685395 MsG0880046301.01.T01:CDS
AGGAGTTTGGAAGTAGCTAT+AGG 0.471609 8:+71687171 MsG0880046301.01.T01:CDS
CAAGAACAGCGATGGGTCCT+GGG 0.472800 8:-71685382 None:intergenic
CTGTTAGGGTTTGAATAGAA+AGG 0.477162 8:-71685317 None:intergenic
TGTGTGGAGGCTGAGGATAA+GGG 0.482405 8:+71685731 MsG0880046301.01.T01:CDS
ACCATTCGTAGAGGCATGCC+GGG 0.493972 8:-71687110 None:intergenic
CTACGCAAGTCTTTGAGAAA+AGG 0.494854 8:+71685677 MsG0880046301.01.T01:CDS
CTGAGGATAAGGGTAGAGAT+GGG 0.500676 8:+71685741 MsG0880046301.01.T01:CDS
CGCAAGTCTTTGAGAAAAGG+TGG 0.500921 8:+71685680 MsG0880046301.01.T01:CDS
GGGAGGATAATGGTGAATGT+TGG 0.501623 8:+71685701 MsG0880046301.01.T01:CDS
GATGATACTGGCAGTAGAGC+CGG 0.501669 8:-71685414 None:intergenic
TAATGCAGTTGTCCATGGTT+GGG 0.503222 8:+71685451 MsG0880046301.01.T01:CDS
AGGGAGTTGTGTGGAGGCTG+AGG 0.505784 8:+71685724 MsG0880046301.01.T01:CDS
AACGTTGAAAGCTATGAAGA+TGG 0.508054 8:+71685781 MsG0880046301.01.T01:CDS
GCTTTAACAGCGAGTTTGGT+AGG 0.509679 8:+71685572 MsG0880046301.01.T01:CDS
AGATATTGTGGAAGAAATCA+AGG 0.510526 8:+71687050 MsG0880046301.01.T01:CDS
TTCGAAGGGAAGTTTGATAC+CGG 0.517054 8:+71685625 MsG0880046301.01.T01:CDS
GTTGAATCGTATTTATATCC+CGG 0.517892 8:+71687092 MsG0880046301.01.T01:CDS
TAACAGCGAGTTTGGTAGGT+GGG 0.522337 8:+71685576 MsG0880046301.01.T01:CDS
GGTCCTGGGGTAGGATTGGC+GGG 0.525077 8:-71685368 None:intergenic
AGGATAATGGTGAATGTTGG+AGG 0.525771 8:+71685704 MsG0880046301.01.T01:CDS
GAAGTCATCCTACACTAAGT+TGG 0.530093 8:+71686573 MsG0880046301.01.T01:CDS
CTAATGCAGTTGTCCATGGT+TGG 0.530641 8:+71685450 MsG0880046301.01.T01:CDS
GTAGCAGCCTCTTGTAGCTC+CGG 0.534898 8:-71685644 None:intergenic
AGAAATAATAGAGTCCGGTA+TGG 0.536021 8:+71686936 MsG0880046301.01.T01:CDS
GCCGAAGCCAAGAACAGCGA+TGG 0.539826 8:-71685390 None:intergenic
GAATGTTGGAGGGAGTTGTG+TGG 0.540047 8:+71685715 MsG0880046301.01.T01:CDS
CATGCCTCTACGAATGGTGT+TGG 0.540844 8:+71687115 MsG0880046301.01.T01:CDS
AAGAAATCAAGGTGTTGTCT+TGG 0.542855 8:+71687061 MsG0880046301.01.T01:CDS
GTTTGGAAGTAGCTATAGGA+AGG 0.543243 8:+71687175 MsG0880046301.01.T01:CDS
GCTACAAGAGGCTGCTACGT+GGG 0.548521 8:+71685649 MsG0880046301.01.T01:CDS
GTGAAAGAAATAATAGAGTC+CGG 0.553448 8:+71686931 MsG0880046301.01.T01:CDS
ATTAGGAGTGTTGGAGTTGG+GGG 0.554859 8:+71686909 MsG0880046301.01.T01:intron
CGAAGACTTGTGGCGAGAGG+AGG 0.556655 8:+71686612 MsG0880046301.01.T01:CDS
TTTCCACAAAACCAATTGGT+TGG 0.558310 8:-71686983 None:intergenic
AAATGGTGTTTGTCAATATG+TGG 0.560430 8:+71686636 MsG0880046301.01.T01:CDS
ATTGCCTTGTGAGGGTAGCT+CGG 0.571057 8:+71687148 MsG0880046301.01.T01:CDS
TCCCGGCATGCCTCTACGAA+TGG 0.579442 8:+71687109 MsG0880046301.01.T01:CDS
GTTCTTAGACTTGGGAATCG+TGG 0.581177 8:+71685824 MsG0880046301.01.T01:CDS
ACTCCCGCCAATCCTACCCC+AGG 0.581319 8:+71685365 MsG0880046301.01.T01:CDS
ACAGCGATGGGTCCTGGGGT+AGG 0.582281 8:-71685377 None:intergenic
TGGTGTTGTTCGAAGACTTG+TGG 0.584132 8:+71686602 MsG0880046301.01.T01:CDS
GTCGAAGTAAGTGTCTGTTA+GGG 0.590175 8:-71685331 None:intergenic
CTGCATTAGGGTAAAACTTG+AGG 0.590331 8:-71685436 None:intergenic
GCTATAGGAAGGTGGTGGTG+AGG 0.595964 8:+71687186 MsG0880046301.01.T01:CDS
CCGAAGCCAAGAACAGCGAT+GGG 0.596032 8:-71685389 None:intergenic
GAGCCCGTCACCTTCAAAAG+TGG 0.598363 8:+71686661 MsG0880046301.01.T01:CDS
TTAACAGCGAGTTTGGTAGG+TGG 0.606037 8:+71685575 MsG0880046301.01.T01:CDS
TGGAAGTAGCTATAGGAAGG+TGG 0.606201 8:+71687178 MsG0880046301.01.T01:CDS
TCCAAATGATTGCCTTGTGA+GGG 0.606715 8:+71687140 MsG0880046301.01.T01:CDS
GGATAATGGTGAATGTTGGA+GGG 0.608534 8:+71685705 MsG0880046301.01.T01:CDS
TGTTGGAGGGAGTTGTGTGG+AGG 0.613070 8:+71685718 MsG0880046301.01.T01:CDS
GTTCGAAGACTTGTGGCGAG+AGG 0.614945 8:+71686609 MsG0880046301.01.T01:CDS
TAGAGATGGGAATCTTGTGA+TGG 0.618682 8:+71685754 MsG0880046301.01.T01:CDS
ATATAAGCCATAATCCATAC+CGG 0.622469 8:-71686950 None:intergenic
TCCTCCGAGCTACCCTCACA+AGG 0.630932 8:-71687152 None:intergenic
GATTCCAACACCATTCGTAG+AGG 0.631478 8:-71687119 None:intergenic
CAAATGCTCCAACTTAGTGT+AGG 0.631901 8:-71686581 None:intergenic
ATCCAAATGATTGCCTTGTG+AGG 0.631919 8:+71687139 MsG0880046301.01.T01:CDS
AAGTATCAAGTTCCCAACCA+TGG 0.633021 8:-71685463 None:intergenic
GCAAGTCTTTGAGAAAAGGT+GGG 0.633350 8:+71685681 MsG0880046301.01.T01:CDS
TAGACTTGGGAATCGTGGAG+AGG 0.638594 8:+71685829 MsG0880046301.01.T01:CDS
AAGTAGCTATAGGAAGGTGG+TGG 0.646583 8:+71687181 MsG0880046301.01.T01:CDS
TTTGATACCGGAGCTACAAG+AGG 0.655187 8:+71685637 MsG0880046301.01.T01:CDS
AGCTACAAGAGGCTGCTACG+TGG 0.663768 8:+71685648 MsG0880046301.01.T01:CDS
AAGAACAGCGATGGGTCCTG+GGG 0.671915 8:-71685381 None:intergenic
GCCTTGTGAGGGTAGCTCGG+AGG 0.676040 8:+71687151 MsG0880046301.01.T01:CDS
TGAATAGAAAGGAAATGCTG+TGG 0.688126 8:-71685306 None:intergenic
AGTCTTTGAGAAAAGGTGGG+AGG 0.703905 8:+71685684 MsG0880046301.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAATTCAATATATATTTCT+TGG + Chr8:71686471-71686490 MsG0880046301.01.T01:intron 15.0%
!! TCAAACCACTAAAAAAATTA+GGG - Chr8:71686040-71686059 None:intergenic 20.0%
!!! AATAGACTTTTTGTTTATGT+TGG + Chr8:71685545-71685564 MsG0880046301.01.T01:CDS 20.0%
! AATTTACAGAACTTAAGTAG+TGG + Chr8:71686188-71686207 MsG0880046301.01.T01:intron 25.0%
! ACATAACATCTCAATGAATT+CGG - Chr8:71685914-71685933 None:intergenic 25.0%
! ACGAAGTTTAAATTTCACAT+AGG - Chr8:71686016-71686035 None:intergenic 25.0%
! CAATTATACTAACCAGAATA+AGG - Chr8:71685950-71685969 None:intergenic 25.0%
! CAGCTTAGATAATCTAAATT+TGG - Chr8:71686432-71686451 None:intergenic 25.0%
! CTCAAACCACTAAAAAAATT+AGG - Chr8:71686041-71686060 None:intergenic 25.0%
! GGATTATGGCTTATATTATA+TGG + Chr8:71686957-71686976 MsG0880046301.01.T01:CDS 25.0%
! GTTGTGTCAAAAAACATATA+TGG + Chr8:71686525-71686544 MsG0880046301.01.T01:intron 25.0%
! TAATGAATGAAAAGATTAGG+AGG - Chr8:71686893-71686912 None:intergenic 25.0%
! TCCTAATGAATGAAAAGATT+AGG - Chr8:71686896-71686915 None:intergenic 25.0%
! TTTCCATACTTCCATTAATA+GGG - Chr8:71686348-71686367 None:intergenic 25.0%
!! ATTGTCTATATGTTTTCCTA+AGG + Chr8:71686294-71686313 MsG0880046301.01.T01:intron 25.0%
!! TCCTAATCTTTTCATTCATT+AGG + Chr8:71686892-71686911 MsG0880046301.01.T01:intron 25.0%
!! TTTTGATGTTGAAGATATTG+TGG + Chr8:71687038-71687057 MsG0880046301.01.T01:CDS 25.0%
!!! CTAATTTTTTTAGTGGTTTG+AGG + Chr8:71686039-71686058 MsG0880046301.01.T01:intron 25.0%
!!! TGAGATGTTATGTTGATTTA+TGG + Chr8:71685921-71685940 MsG0880046301.01.T01:CDS 25.0%
AAAAACATATATGGCGTTGT+TGG + Chr8:71686534-71686553 MsG0880046301.01.T01:intron 30.0%
AAATGGTGTTTGTCAATATG+TGG + Chr8:71686636-71686655 MsG0880046301.01.T01:CDS 30.0%
AGACATAGCTAAAGAGAAAA+TGG + Chr8:71686400-71686419 MsG0880046301.01.T01:intron 30.0%
AGATATTGTGGAAGAAATCA+AGG + Chr8:71687050-71687069 MsG0880046301.01.T01:CDS 30.0%
ATATAAGCCATAATCCATAC+CGG - Chr8:71686953-71686972 None:intergenic 30.0%
CATCATATTCTGCACAAAAT+GGG - Chr8:71686088-71686107 None:intergenic 30.0%
CTTTCCATACTTCCATTAAT+AGG - Chr8:71686349-71686368 None:intergenic 30.0%
GTGAAAGAAATAATAGAGTC+CGG + Chr8:71686931-71686950 MsG0880046301.01.T01:CDS 30.0%
GTGGTAGTAGTATAATCTTA+TGG + Chr8:71686207-71686226 MsG0880046301.01.T01:intron 30.0%
GTTGAATCGTATTTATATCC+CGG + Chr8:71687092-71687111 MsG0880046301.01.T01:CDS 30.0%
TAGGAATAAACACAAACACT+TGG - Chr8:71685997-71686016 None:intergenic 30.0%
TGGGATTTATGATTTATCTG+TGG - Chr8:71686069-71686088 None:intergenic 30.0%
TTATTCCCACAAGAACATTT+GGG - Chr8:71686258-71686277 None:intergenic 30.0%
! AAAGCTATGAAGATGGTTTT+TGG + Chr8:71685788-71685807 MsG0880046301.01.T01:CDS 30.0%
! AAGCTTTTTGTTCTTAGACT+TGG + Chr8:71685815-71685834 MsG0880046301.01.T01:CDS 30.0%
! AGCTTTTTGTTCTTAGACTT+GGG + Chr8:71685816-71685835 MsG0880046301.01.T01:CDS 30.0%
!! TTTTCATTCATTAGGAGTGT+TGG + Chr8:71686900-71686919 MsG0880046301.01.T01:intron 30.0%
!!! ATTTTCCTGATATTGATTCG+TGG + Chr8:71685876-71685895 MsG0880046301.01.T01:CDS 30.0%
!!! TCGTTCCCTAATTTTTTTAG+TGG + Chr8:71686032-71686051 MsG0880046301.01.T01:intron 30.0%
!!! TTTTTTTAGTGGTTTGAGGA+AGG + Chr8:71686043-71686062 MsG0880046301.01.T01:intron 30.0%
AAATGCTTTAACAGCGAGTT+TGG + Chr8:71685568-71685587 MsG0880046301.01.T01:CDS 35.0%
AACGTTGAAAGCTATGAAGA+TGG + Chr8:71685781-71685800 MsG0880046301.01.T01:CDS 35.0%
AGAAATAATAGAGTCCGGTA+TGG + Chr8:71686936-71686955 MsG0880046301.01.T01:CDS 35.0%
CCATCATATTCTGCACAAAA+TGG - Chr8:71686089-71686108 None:intergenic 35.0%
CTGTTAGGGTTTGAATAGAA+AGG - Chr8:71685320-71685339 None:intergenic 35.0%
CTTATTCCCACAAGAACATT+TGG - Chr8:71686259-71686278 None:intergenic 35.0%
CTTGATTAAAGGATGGAAGA+GGG - Chr8:71686376-71686395 None:intergenic 35.0%
GATTTATGGAGACCTTATTC+TGG + Chr8:71685935-71685954 MsG0880046301.01.T01:CDS 35.0%
GTAAAACTTGAGGATGATAC+TGG - Chr8:71685429-71685448 None:intergenic 35.0%
TATGTCTCGAGCTTGATTAA+AGG - Chr8:71686387-71686406 None:intergenic 35.0%
TGAATAGAAAGGAAATGCTG+TGG - Chr8:71685309-71685328 None:intergenic 35.0%
TTACTCCCAAATGTTCTTGT+GGG + Chr8:71686250-71686269 MsG0880046301.01.T01:intron 35.0%
TTATATGGCATCCAACCAAT+TGG + Chr8:71686972-71686991 MsG0880046301.01.T01:CDS 35.0%
TTCTTCCACGAATCAATATC+AGG - Chr8:71685884-71685903 None:intergenic 35.0%
TTGCTTTCCACAAAACCAAT+TGG - Chr8:71686990-71687009 None:intergenic 35.0%
TTTACTCCCAAATGTTCTTG+TGG + Chr8:71686249-71686268 MsG0880046301.01.T01:intron 35.0%
TTTCCACAAAACCAATTGGT+TGG - Chr8:71686986-71687005 None:intergenic 35.0%
! CCATTTTGTGCAGAATATGA+TGG + Chr8:71686086-71686105 MsG0880046301.01.T01:intron 35.0%
!! AAGAAATCAAGGTGTTGTCT+TGG + Chr8:71687061-71687080 MsG0880046301.01.T01:CDS 35.0%
!! CTTGTGGATTTGTTTTCGAA+GGG + Chr8:71685611-71685630 MsG0880046301.01.T01:CDS 35.0%
!! TCTTGTGGATTTGTTTTCGA+AGG + Chr8:71685610-71685629 MsG0880046301.01.T01:CDS 35.0%
!!! AATTGGTTTTGTGGAAAGCA+AGG + Chr8:71686989-71687008 MsG0880046301.01.T01:CDS 35.0%
AAAGCAAGATTCTCTCTAGC+TGG - Chr8:71686722-71686741 None:intergenic 40.0%
AACATATATGGCGTTGTTGG+AGG + Chr8:71686537-71686556 MsG0880046301.01.T01:intron 40.0%
AACCATGGACAACTGCATTA+GGG - Chr8:71685451-71685470 None:intergenic 40.0%
AAGCAAGATTCTCTCTAGCT+GGG - Chr8:71686721-71686740 None:intergenic 40.0%
AAGTATCAAGTTCCCAACCA+TGG - Chr8:71685466-71685485 None:intergenic 40.0%
AATTGTGCGTGATGTGTGAA+AGG + Chr8:71686771-71686790 MsG0880046301.01.T01:intron 40.0%
ACATATATGGCGTTGTTGGA+GGG + Chr8:71686538-71686557 MsG0880046301.01.T01:intron 40.0%
AGGAGTTTGGAAGTAGCTAT+AGG + Chr8:71687171-71687190 MsG0880046301.01.T01:CDS 40.0%
ATCCAAATGATTGCCTTGTG+AGG + Chr8:71687139-71687158 MsG0880046301.01.T01:CDS 40.0%
ATTGTGCGTGATGTGTGAAA+GGG + Chr8:71686772-71686791 MsG0880046301.01.T01:intron 40.0%
CAAATGCTCCAACTTAGTGT+AGG - Chr8:71686584-71686603 None:intergenic 40.0%
CTAGAGAGAATCTTGCTTTG+AGG + Chr8:71686723-71686742 MsG0880046301.01.T01:intron 40.0%
CTGCATTAGGGTAAAACTTG+AGG - Chr8:71685439-71685458 None:intergenic 40.0%
GAAGTCATCCTACACTAAGT+TGG + Chr8:71686573-71686592 MsG0880046301.01.T01:CDS 40.0%
GATAGTTCTCTTGCTCTTAC+AGG + Chr8:71685851-71685870 MsG0880046301.01.T01:CDS 40.0%
GCTTGATTAAAGGATGGAAG+AGG - Chr8:71686377-71686396 None:intergenic 40.0%
GGACCCTATTAATGGAAGTA+TGG + Chr8:71686342-71686361 MsG0880046301.01.T01:intron 40.0%
GTCGAAGTAAGTGTCTGTTA+GGG - Chr8:71685334-71685353 None:intergenic 40.0%
GTTTGGAAGTAGCTATAGGA+AGG + Chr8:71687175-71687194 MsG0880046301.01.T01:CDS 40.0%
TAATGCAGTTGTCCATGGTT+GGG + Chr8:71685451-71685470 MsG0880046301.01.T01:CDS 40.0%
TAGAGATGGGAATCTTGTGA+TGG + Chr8:71685754-71685773 MsG0880046301.01.T01:CDS 40.0%
TCCAAATGATTGCCTTGTGA+GGG + Chr8:71687140-71687159 MsG0880046301.01.T01:CDS 40.0%
TCTCATCACGAAGCATATGT+TGG + Chr8:71686503-71686522 MsG0880046301.01.T01:intron 40.0%
TCTCGAGCTTGATTAAAGGA+TGG - Chr8:71686383-71686402 None:intergenic 40.0%
TTCGAAGGGAAGTTTGATAC+CGG + Chr8:71685625-71685644 MsG0880046301.01.T01:CDS 40.0%
! AGGATAATGGTGAATGTTGG+AGG + Chr8:71685704-71685723 MsG0880046301.01.T01:CDS 40.0%
! ATAGAGTCCGGTATGGATTA+TGG + Chr8:71686943-71686962 MsG0880046301.01.T01:CDS 40.0%
! CAAAAGTGGTAGCGATTTCT+TGG + Chr8:71686675-71686694 MsG0880046301.01.T01:intron 40.0%
! CTACACTAAGTTGGAGCATT+TGG + Chr8:71686582-71686601 MsG0880046301.01.T01:CDS 40.0%
! CTACGCAAGTCTTTGAGAAA+AGG + Chr8:71685677-71685696 MsG0880046301.01.T01:CDS 40.0%
! GCAAGTCTTTGAGAAAAGGT+GGG + Chr8:71685681-71685700 MsG0880046301.01.T01:CDS 40.0%
! GGATAATGGTGAATGTTGGA+GGG + Chr8:71685705-71685724 MsG0880046301.01.T01:CDS 40.0%
! TGTTTTCCTAAGGTGAATCC+AGG + Chr8:71686304-71686323 MsG0880046301.01.T01:intron 40.0%
!! GAAATCGCTACCACTTTTGA+AGG - Chr8:71686674-71686693 None:intergenic 40.0%
!! TCATTAGGAGTGTTGGAGTT+GGG + Chr8:71686907-71686926 MsG0880046301.01.T01:intron 40.0%
!! TTCATTAGGAGTGTTGGAGT+TGG + Chr8:71686906-71686925 MsG0880046301.01.T01:intron 40.0%
!!! CATCCAACCAATTGGTTTTG+TGG + Chr8:71686980-71686999 MsG0880046301.01.T01:CDS 40.0%
AAGTAGCTATAGGAAGGTGG+TGG + Chr8:71687181-71687200 MsG0880046301.01.T01:CDS 45.0%
ACCCTCACAAGGCAATCATT+TGG - Chr8:71687144-71687163 None:intergenic 45.0%
CAACCATGGACAACTGCATT+AGG - Chr8:71685452-71685471 None:intergenic 45.0%
CATTAATAGGGTCCAAGCCA+AGG - Chr8:71686336-71686355 None:intergenic 45.0%
CGTCGAAGTAAGTGTCTGTT+AGG - Chr8:71685335-71685354 None:intergenic 45.0%
CTAATGCAGTTGTCCATGGT+TGG + Chr8:71685450-71685469 MsG0880046301.01.T01:CDS 45.0%
CTGAGGATAAGGGTAGAGAT+GGG + Chr8:71685741-71685760 MsG0880046301.01.T01:CDS 45.0%
GAGAAAAGGTGGGAGGATAA+TGG + Chr8:71685691-71685710 MsG0880046301.01.T01:CDS 45.0%
GATTAAAGGATGGAAGAGGG+TGG - Chr8:71686373-71686392 None:intergenic 45.0%
GATTCCAACACCATTCGTAG+AGG - Chr8:71687122-71687141 None:intergenic 45.0%
GCTTTAACAGCGAGTTTGGT+AGG + Chr8:71685572-71685591 MsG0880046301.01.T01:CDS 45.0%
GTGATGTAGCGTGTAGTGTT+TGG + Chr8:71686828-71686847 MsG0880046301.01.T01:intron 45.0%
GTTCTTAGACTTGGGAATCG+TGG + Chr8:71685824-71685843 MsG0880046301.01.T01:CDS 45.0%
TAACAGCGAGTTTGGTAGGT+GGG + Chr8:71685576-71685595 MsG0880046301.01.T01:CDS 45.0%
TACCCTAATGCAGTTGTCCA+TGG + Chr8:71685446-71685465 MsG0880046301.01.T01:CDS 45.0%
TCCTAAGGTGAATCCAGGTT+GGG + Chr8:71686309-71686328 MsG0880046301.01.T01:intron 45.0%
TGGAAGTAGCTATAGGAAGG+TGG + Chr8:71687178-71687197 MsG0880046301.01.T01:CDS 45.0%
TTAACAGCGAGTTTGGTAGG+TGG + Chr8:71685575-71685594 MsG0880046301.01.T01:CDS 45.0%
TTCCTAAGGTGAATCCAGGT+TGG + Chr8:71686308-71686327 MsG0880046301.01.T01:intron 45.0%
TTTGATACCGGAGCTACAAG+AGG + Chr8:71685637-71685656 MsG0880046301.01.T01:CDS 45.0%
! ACACAAACACTTGGTGAGCA+TGG - Chr8:71685988-71686007 None:intergenic 45.0%
! AGTCTTTGAGAAAAGGTGGG+AGG + Chr8:71685684-71685703 MsG0880046301.01.T01:CDS 45.0%
! CGCAAGTCTTTGAGAAAAGG+TGG + Chr8:71685680-71685699 MsG0880046301.01.T01:CDS 45.0%
! GGGAGGATAATGGTGAATGT+TGG + Chr8:71685701-71685720 MsG0880046301.01.T01:CDS 45.0%
!! AGTTTGGTAGGTGGGTTTTC+AGG + Chr8:71685584-71685603 MsG0880046301.01.T01:CDS 45.0%
!! ATTAGGAGTGTTGGAGTTGG+GGG + Chr8:71686909-71686928 MsG0880046301.01.T01:intron 45.0%
!! CATTAGGAGTGTTGGAGTTG+GGG + Chr8:71686908-71686927 MsG0880046301.01.T01:intron 45.0%
!! CTACCACTTTTGAAGGTGAC+GGG - Chr8:71686667-71686686 None:intergenic 45.0%
!! CTTGGCTTGGACCCTATTAA+TGG + Chr8:71686334-71686353 MsG0880046301.01.T01:intron 45.0%
!! GCTACCACTTTTGAAGGTGA+CGG - Chr8:71686668-71686687 None:intergenic 45.0%
!! TGGGTTTTCAGGCATTCTTG+TGG + Chr8:71685595-71685614 MsG0880046301.01.T01:CDS 45.0%
!! TGGTGTTGTTCGAAGACTTG+TGG + Chr8:71686602-71686621 MsG0880046301.01.T01:CDS 45.0%
ACCCAACCTGGATTCACCTT+AGG - Chr8:71686313-71686332 None:intergenic 50.0%
AGCGTGTAGTGTTTGGTCGA+AGG + Chr8:71686835-71686854 MsG0880046301.01.T01:intron 50.0%
AGGTGATGAGGTGGTTGGAT+AGG + Chr8:71686855-71686874 MsG0880046301.01.T01:intron 50.0%
ATTGCCTTGTGAGGGTAGCT+CGG + Chr8:71687148-71687167 MsG0880046301.01.T01:CDS 50.0%
CATGCCTCTACGAATGGTGT+TGG + Chr8:71687115-71687134 MsG0880046301.01.T01:CDS 50.0%
GAATGTTGGAGGGAGTTGTG+TGG + Chr8:71685715-71685734 MsG0880046301.01.T01:CDS 50.0%
GATGATACTGGCAGTAGAGC+CGG - Chr8:71685417-71685436 None:intergenic 50.0%
GCTGAGGATAAGGGTAGAGA+TGG + Chr8:71685740-71685759 MsG0880046301.01.T01:CDS 50.0%
GTGATGTGTGAAAGGGTGGA+TGG + Chr8:71686779-71686798 MsG0880046301.01.T01:intron 50.0%
GTGTTTGGTCGAAGGTGATG+AGG + Chr8:71686843-71686862 MsG0880046301.01.T01:intron 50.0%
TAGACTTGGGAATCGTGGAG+AGG + Chr8:71685829-71685848 MsG0880046301.01.T01:CDS 50.0%
TGAAAGGGTGGATGGATCGT+TGG + Chr8:71686787-71686806 MsG0880046301.01.T01:intron 50.0%
TGTGTGGAGGCTGAGGATAA+GGG + Chr8:71685731-71685750 MsG0880046301.01.T01:CDS 50.0%
TTGTGGCGAGAGGAGGAAAA+TGG + Chr8:71686619-71686638 MsG0880046301.01.T01:CDS 50.0%
TTGTGTGGAGGCTGAGGATA+AGG + Chr8:71685730-71685749 MsG0880046301.01.T01:CDS 50.0%
TTTGGTCGAAGGTGATGAGG+TGG + Chr8:71686846-71686865 MsG0880046301.01.T01:intron 50.0%
AAGAACAGCGATGGGTCCTG+GGG - Chr8:71685384-71685403 None:intergenic 55.0%
AGCTACAAGAGGCTGCTACG+TGG + Chr8:71685648-71685667 MsG0880046301.01.T01:CDS 55.0%
CAAGAACAGCGATGGGTCCT+GGG - Chr8:71685385-71685404 None:intergenic 55.0%
CCCATCGCTGTTCTTGGCTT+CGG + Chr8:71685389-71685408 MsG0880046301.01.T01:CDS 55.0%
CCGAAGCCAAGAACAGCGAT+GGG - Chr8:71685392-71685411 None:intergenic 55.0%
GAGCCCGTCACCTTCAAAAG+TGG + Chr8:71686661-71686680 MsG0880046301.01.T01:CDS 55.0%
GCTACAAGAGGCTGCTACGT+GGG + Chr8:71685649-71685668 MsG0880046301.01.T01:CDS 55.0%
GTAGCAGCCTCTTGTAGCTC+CGG - Chr8:71685647-71685666 None:intergenic 55.0%
GTCGAAGGTGATGAGGTGGT+TGG + Chr8:71686850-71686869 MsG0880046301.01.T01:intron 55.0%
GTGCGTGATGTGTGAAAGGG+TGG + Chr8:71686775-71686794 MsG0880046301.01.T01:intron 55.0%
GTTCGAAGACTTGTGGCGAG+AGG + Chr8:71686609-71686628 MsG0880046301.01.T01:CDS 55.0%
TGTTGGAGGGAGTTGTGTGG+AGG + Chr8:71685718-71685737 MsG0880046301.01.T01:CDS 55.0%
! ACCATTCGTAGAGGCATGCC+GGG - Chr8:71687113-71687132 None:intergenic 55.0%
! CACCATTCGTAGAGGCATGC+CGG - Chr8:71687114-71687133 None:intergenic 55.0%
! GTGAATCCAGGTTGGGTCCT+TGG + Chr8:71686316-71686335 MsG0880046301.01.T01:intron 55.0%
AGGGAGTTGTGTGGAGGCTG+AGG + Chr8:71685724-71685743 MsG0880046301.01.T01:CDS 60.0%
CCAAGAACAGCGATGGGTCC+TGG - Chr8:71685386-71685405 None:intergenic 60.0%
CCAGGACCCATCGCTGTTCT+TGG + Chr8:71685383-71685402 MsG0880046301.01.T01:CDS 60.0%
CGAAGACTTGTGGCGAGAGG+AGG + Chr8:71686612-71686631 MsG0880046301.01.T01:CDS 60.0%
GAGGGTAGCTCGGAGGAGTT+TGG + Chr8:71687158-71687177 MsG0880046301.01.T01:CDS 60.0%
GATGGGTCCTGGGGTAGGAT+TGG - Chr8:71685375-71685394 None:intergenic 60.0%
GCCGAAGCCAAGAACAGCGA+TGG - Chr8:71685393-71685412 None:intergenic 60.0%
TCCAAGCCAAGGACCCAACC+TGG - Chr8:71686325-71686344 None:intergenic 60.0%
TCCCGGCATGCCTCTACGAA+TGG + Chr8:71687109-71687128 MsG0880046301.01.T01:CDS 60.0%
TCCTCCGAGCTACCCTCACA+AGG - Chr8:71687155-71687174 None:intergenic 60.0%
! TCCAGGTTGGGTCCTTGGCT+TGG + Chr8:71686321-71686340 MsG0880046301.01.T01:intron 60.0%
ACAGCGATGGGTCCTGGGGT+AGG - Chr8:71685380-71685399 None:intergenic 65.0%
ACTCCCGCCAATCCTACCCC+AGG + Chr8:71685365-71685384 MsG0880046301.01.T01:CDS 65.0%
GCCTTGTGAGGGTAGCTCGG+AGG + Chr8:71687151-71687170 MsG0880046301.01.T01:CDS 65.0%
GCTGTTCTTGGCTTCGGCGC+CGG + Chr8:71685395-71685414 MsG0880046301.01.T01:CDS 65.0%
GGGTCCTGGGGTAGGATTGG+CGG - Chr8:71685372-71685391 None:intergenic 65.0%
! GGTCCTGGGGTAGGATTGGC+GGG - Chr8:71685371-71685390 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr8 gene 71685296 71687206 71685296 ID=MsG0880046301.01;Name=MsG0880046301.01
Chr8 mRNA 71685296 71687206 71685296 ID=MsG0880046301.01.T01;Parent=MsG0880046301.01;Name=MsG0880046301.01.T01;_AED=0.31;_eAED=0.45;_QI=0|0|0|1|1|1|3|0|354
Chr8 exon 71685296 71685956 71685296 ID=MsG0880046301.01.T01:exon:27880;Parent=MsG0880046301.01.T01
Chr8 exon 71686572 71686682 71686572 ID=MsG0880046301.01.T01:exon:27881;Parent=MsG0880046301.01.T01
Chr8 exon 71686914 71687206 71686914 ID=MsG0880046301.01.T01:exon:27882;Parent=MsG0880046301.01.T01
Chr8 CDS 71685296 71685956 71685296 ID=MsG0880046301.01.T01:cds;Parent=MsG0880046301.01.T01
Chr8 CDS 71686572 71686682 71686572 ID=MsG0880046301.01.T01:cds;Parent=MsG0880046301.01.T01
Chr8 CDS 71686914 71687206 71686914 ID=MsG0880046301.01.T01:cds;Parent=MsG0880046301.01.T01
Gene Sequence

>MsG0880046301.01.T01

CTGGAAACATCCACAGCATTTCCTTTCTATTCAAACCCTAACAGACACTTACTTCGACGTCTTCGCGACACTCCCGCCAATCCTACCCCAGGACCCATCGCTGTTCTTGGCTTCGGCGCCGGCTCTACTGCCAGTATCATCCTCAAGTTTTACCCTAATGCAGTTGTCCATGGTTGGGAACTTGATACTTCTGTAATTGATGTTGCACGAGAGTTTTTCAATCTTGAAAAGATTGAAAGAGAGAATAAAAATAGACTTTTTGTTTATGTTGGAAATGCTTTAACAGCGAGTTTGGTAGGTGGGTTTTCAGGCATTCTTGTGGATTTGTTTTCGAAGGGAAGTTTGATACCGGAGCTACAAGAGGCTGCTACGTGGGAGAAACTACGCAAGTCTTTGAGAAAAGGTGGGAGGATAATGGTGAATGTTGGAGGGAGTTGTGTGGAGGCTGAGGATAAGGGTAGAGATGGGAATCTTGTGATGGAAGAAACGTTGAAAGCTATGAAGATGGTTTTTGGTGAGAAGCTTTTTGTTCTTAGACTTGGGAATCGTGGAGAGGATAGTTCTCTTGCTCTTACAGGTGATTTTCCTGATATTGATTCGTGGAAGAACGCGCTTCCGAATTCATTGAGATGTTATGTTGATTTATGGAGACCTTATTCTGTGAAGTCATCCTACACTAAGTTGGAGCATTTGGTGTTGTTCGAAGACTTGTGGCGAGAGGAGGAAAATGGTGTTTGTCAATATGTGGAAGAGCCCGTCACCTTCAAAAGTGGAGTGTTGGAGTTGGGGGTGAAAGAAATAATAGAGTCCGGTATGGATTATGGCTTATATTATATGGCATCCAACCAATTGGTTTTGTGGAAAGCAAGGAAAAATAGAATGTACAACAATACTAATTTTGATGTTGAAGATATTGTGGAAGAAATCAAGGTGTTGTCTTGGCATTTGACGTTGAATCGTATTTATATCCCGGCATGCCTCTACGAATGGTGTTGGAATCCAAATGATTGCCTTGTGAGGGTAGCTCGGAGGAGTTTGGAAGTAGCTATAGGAAGGTGGTGGTGA
Protein sequence

>MsG0880046301.01.T01

LETSTAFPFYSNPNRHLLRRLRDTPANPTPGPIAVLGFGAGSTASIILKFYPNAVVHGWELDTSVIDVAREFFNLEKIERENKNRLFVYVGNALTASLVGGFSGILVDLFSKGSLIPELQEAATWEKLRKSLRKGGRIMVNVGGSCVEAEDKGRDGNLVMEETLKAMKMVFGEKLFVLRLGNRGEDSSLALTGDFPDIDSWKNALPNSLRCYVDLWRPYSVKSSYTKLEHLVLFEDLWREEENGVCQYVEEPVTFKSGVLELGVKEIIESGMDYGLYYMASNQLVLWKARKNRMYNNTNFDVEDIVEEIKVLSWHLTLNRIYIPACLYEWCWNPNDCLVRVARRSLEVAIGRWW*