AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016764.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016764.01.T01 MTR_3g095070 95.796 333 14 0 1 333 1 333 0.0 660
MsG0380016764.01.T01 MTR_7g100328 37.367 281 151 6 60 324 74 345 8.72e-52 175
MsG0380016764.01.T01 MTR_1g067600 33.333 210 134 4 104 310 132 338 3.90e-26 107
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016764.01.T01 AT4G39470 54.513 277 120 2 62 333 66 341 6.24e-103 306
MsG0380016764.01.T01 AT3G18420 36.992 246 142 4 74 306 55 300 2.47e-42 149
MsG0380016764.01.T01 AT2G37400 39.896 193 115 1 123 314 129 321 1.01e-37 137
MsG0380016764.01.T01 AT3G53560 40.000 195 112 2 123 314 129 321 2.81e-37 136
MsG0380016764.01.T01 AT5G02590 39.691 194 115 2 115 307 120 312 5.46e-37 135
MsG0380016764.01.T01 AT3G53560 39.320 206 119 3 112 314 167 369 5.78e-37 137
MsG0380016764.01.T01 AT3G09490 35.814 215 130 3 92 303 84 293 1.58e-30 118

Find 79 sgRNAs with CRISPR-Local

Find 165 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGATTGTATTTGGAAATTT+TGG 0.111951 3:-87604702 MsG0380016764.01.T01:CDS
TGTTGATTCAGCTGAAATTT+TGG 0.183578 3:-87604921 MsG0380016764.01.T01:CDS
TAAGGCTAAAGGATTGTATT+TGG 0.219222 3:-87604711 MsG0380016764.01.T01:CDS
AACAAGTGCATAGTGATAAA+TGG 0.231649 3:+87605095 None:intergenic
AATTCCTTCTGAAACTTTAC+TGG 0.241171 3:+87602859 None:intergenic
ATACAGTCTTCTAGATAAAA+AGG 0.263949 3:-87602986 MsG0380016764.01.T01:CDS
AAAATTGTGGAGGGTGTTAA+TGG 0.334111 3:+87605064 None:intergenic
AGAAGGGAATTGGGGAGATA+TGG 0.336995 3:+87605187 None:intergenic
TGGTTGTGTATGGGAAAATT+AGG 0.344777 3:-87604850 MsG0380016764.01.T01:CDS
GTGTGCTTTGCAGGGTGATT+TGG 0.355123 3:-87603278 MsG0380016764.01.T01:intron
CCCTTCTGTGGAAACTCTTC+AGG 0.358106 3:+87602922 None:intergenic
AGCCTCCACTCAACCTCATT+TGG 0.359412 3:+87604773 None:intergenic
TCGTGGCAAAAGAAGGGAAT+TGG 0.399875 3:+87605177 None:intergenic
CGTGGCAAAAGAAGGGAATT+GGG 0.418032 3:+87605178 None:intergenic
AGCCCTTGTAGTGCATGGTT+TGG 0.433130 3:-87602618 MsG0380016764.01.T01:three_prime_UTR
TTGCTAGCCCTTGTAGTGCA+TGG 0.441529 3:-87602623 MsG0380016764.01.T01:three_prime_UTR
ACAAGTGCATAGTGATAAAT+GGG 0.468344 3:+87605096 None:intergenic
GCTCTTAAAGTGGTTGTGTA+TGG 0.470707 3:-87604860 MsG0380016764.01.T01:CDS
TTGCAGGGTGATTTGGAGGA+GGG 0.472903 3:-87603271 MsG0380016764.01.T01:intron
TTACGGAGGAGAGAAATATA+AGG 0.473332 3:-87603440 MsG0380016764.01.T01:CDS
TACGAATTCGTGGCAAAAGA+AGG 0.481369 3:+87605170 None:intergenic
TTTGCAGGGTGATTTGGAGG+AGG 0.482427 3:-87603272 MsG0380016764.01.T01:intron
GGTTGAAGTGAAATTGATAA+GGG 0.483895 3:+87605136 None:intergenic
TGCACAAATGCGTGTTGTAC+AGG 0.487235 3:-87603409 MsG0380016764.01.T01:intron
TGCTTTGCAGGGTGATTTGG+AGG 0.487354 3:-87603275 MsG0380016764.01.T01:intron
GATATCACCTTAGCAGCAAA+AGG 0.497307 3:-87602889 MsG0380016764.01.T01:CDS
TTCAGCATTTCAAATACAGC+AGG 0.497693 3:+87603498 None:intergenic
GACAATGGGGTATTTGAGTA+AGG 0.500527 3:-87604729 MsG0380016764.01.T01:CDS
CTCTTAAAGTGGTTGTGTAT+GGG 0.502104 3:-87604859 MsG0380016764.01.T01:CDS
ACTCCAAACCATGCACTACA+AGG 0.509272 3:+87602615 None:intergenic
AAGCTGAGAAGTTTGTGAAG+AGG 0.509773 3:-87604811 MsG0380016764.01.T01:CDS
TGGTTGAAGTGAAATTGATA+AGG 0.510289 3:+87605135 None:intergenic
ATTCCTTCTGAAACTTTACT+GGG 0.524396 3:+87602860 None:intergenic
TCATAGCATTTCTCAATCAA+CGG 0.528567 3:+87602490 None:intergenic
AAACTCACCTGGCAAAGATA+AGG 0.536373 3:+87603199 None:intergenic
GGGTATTTGAGTAAGGCTAA+AGG 0.536389 3:-87604722 MsG0380016764.01.T01:CDS
GCATTGTGTTATGAGACAAT+GGG 0.536548 3:-87604743 MsG0380016764.01.T01:CDS
GCCTGAAGAGTTTCCACAGA+AGG 0.536929 3:-87602923 MsG0380016764.01.T01:CDS
AAATGTTGAGGCTCTTAAAG+TGG 0.543541 3:-87604870 MsG0380016764.01.T01:CDS
AGATGTAGACAAGAGGGTAC+TGG 0.543766 3:-87602683 MsG0380016764.01.T01:three_prime_UTR
AGAAATGCTATGAGAAATGT+TGG 0.544605 3:-87602480 MsG0380016764.01.T01:three_prime_UTR
TATTAATGAAAACAAAGTTA+CGG 0.545367 3:-87603457 MsG0380016764.01.T01:CDS
TAAAGTAAGATGTAGACAAG+AGG 0.548007 3:-87602690 MsG0380016764.01.T01:three_prime_UTR
GGTACTGAAACTGCAAAAGC+GGG 0.549723 3:+87604947 None:intergenic
AGCACATCACACTCTTGTAA+AGG 0.554184 3:-87602742 MsG0380016764.01.T01:three_prime_UTR
CCTGAAGAGTTTCCACAGAA+GGG 0.557973 3:-87602922 MsG0380016764.01.T01:CDS
AAGTTGGTTAAAGTTGTTTG+AGG 0.558821 3:+87605037 None:intergenic
GGAGGGTGTTAATGGAGTGC+GGG 0.560063 3:+87605072 None:intergenic
TGCATTGTGTTATGAGACAA+TGG 0.562265 3:-87604744 MsG0380016764.01.T01:CDS
GATTGATGAGGAACCAAATG+AGG 0.565692 3:-87604786 MsG0380016764.01.T01:CDS
TGGAGGGTGTTAATGGAGTG+CGG 0.568184 3:+87605071 None:intergenic
TCATCAAGAAATCCCTTCTG+TGG 0.572197 3:+87602910 None:intergenic
TTGTTGCAGATACGAATTCG+TGG 0.574634 3:+87605160 None:intergenic
GAGCCAGACAAGCAAAATCT+CGG 0.575315 3:+87602592 None:intergenic
TGAAGAGCTCTAACAAGAAG+AGG 0.582607 3:+87604671 None:intergenic
AGGAACCAAATGAGGTTGAG+TGG 0.584513 3:-87604778 MsG0380016764.01.T01:CDS
ACGAATTCGTGGCAAAAGAA+GGG 0.586466 3:+87605171 None:intergenic
ATCCCCAGTAAAGTTTCAGA+AGG 0.590040 3:-87602863 MsG0380016764.01.T01:CDS
AAAGTAAGATGTAGACAAGA+GGG 0.593000 3:-87602689 MsG0380016764.01.T01:three_prime_UTR
ATCTGAGGAGATGAAGAGAG+TGG 0.593528 3:+87605216 None:intergenic
AGGTACTGAAACTGCAAAAG+CGG 0.602398 3:+87604946 None:intergenic
TGTGAAGAGGTTGATTGATG+AGG 0.608344 3:-87604798 MsG0380016764.01.T01:CDS
TGTTTGAGGTGAGAAAATTG+TGG 0.610889 3:+87605051 None:intergenic
GAGATATGGTTTGAAATCTG+AGG 0.621524 3:+87605201 None:intergenic
GAAGGATTCAAGAAATGTTG+AGG 0.622010 3:-87604882 MsG0380016764.01.T01:CDS
TGTATGGGAAAATTAGGAGA+GGG 0.623027 3:-87604844 MsG0380016764.01.T01:CDS
ATTTCAGCTGAATCAACAGA+AGG 0.625556 3:+87604926 None:intergenic
TGAGGTGAGAAAATTGTGGA+GGG 0.628555 3:+87605055 None:intergenic
CTCCAAACCATGCACTACAA+GGG 0.639240 3:+87602616 None:intergenic
GTGTATGGGAAAATTAGGAG+AGG 0.651978 3:-87604845 MsG0380016764.01.T01:CDS
AGATAAGGCCTAAAATCTCG+AGG 0.652081 3:+87603214 None:intergenic
TTCCTTCTGAAACTTTACTG+GGG 0.652971 3:+87602861 None:intergenic
GTGGCAAAAGAAGGGAATTG+GGG 0.656867 3:+87605179 None:intergenic
TGTATTTGAAATGCTGAACA+AGG 0.665874 3:-87603493 MsG0380016764.01.T01:CDS
TTGAGGTGAGAAAATTGTGG+AGG 0.671928 3:+87605054 None:intergenic
ATAGTGATAAATGGGTAGCA+CGG 0.676425 3:+87605104 None:intergenic
AACCAAATGAGGTTGAGTGG+AGG 0.677766 3:-87604775 MsG0380016764.01.T01:CDS
TAATGAAAACAAAGTTACGG+AGG 0.686188 3:-87603454 MsG0380016764.01.T01:CDS
CATTGTGTTATGAGACAATG+GGG 0.737873 3:-87604742 MsG0380016764.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTAATGAAAACAAAGTTA+CGG - Chr3:87604272-87604291 MsG0380016764.01.T01:intron 15.0%
!!! TAATACAATTACTATTTTGA+CGG + Chr3:87604078-87604097 None:intergenic 15.0%
!!! TCAAATTTTGATTAGAAATT+TGG - Chr3:87603204-87603223 MsG0380016764.01.T01:intron 15.0%
!! AAATAAAGAGTTAAGAACTT+AGG + Chr3:87603661-87603680 None:intergenic 20.0%
!! AATAAAGAGTTAAGAACTTA+GGG + Chr3:87603660-87603679 None:intergenic 20.0%
!! AATAGGAAAGGTAAAAATAT+AGG - Chr3:87604916-87604935 MsG0380016764.01.T01:CDS 20.0%
!! CAAAACAATATAAGCATAAT+AGG + Chr3:87603765-87603784 None:intergenic 20.0%
!! TTTATGTGATGAATATTAGA+CGG - Chr3:87603834-87603853 MsG0380016764.01.T01:intron 20.0%
!! TTTGATTATGATTGAAAAGT+TGG - Chr3:87603154-87603173 MsG0380016764.01.T01:intron 20.0%
!!! AAAGTTTCATTTTTTCTCAT+TGG - Chr3:87602725-87602744 MsG0380016764.01.T01:three_prime_UTR 20.0%
!!! AAGTTTCATTTTTTCTCATT+GGG - Chr3:87602726-87602745 MsG0380016764.01.T01:three_prime_UTR 20.0%
!!! ACTAAGTTGAAAAGAATTTA+TGG + Chr3:87603348-87603367 None:intergenic 20.0%
!!! ATATGAATGCTTTTTTGTTT+AGG - Chr3:87603177-87603196 MsG0380016764.01.T01:intron 20.0%
!!! ATTTTTACCTTTCCTATTTT+TGG + Chr3:87604914-87604933 None:intergenic 20.0%
!!! TAATATAGTTCTGTAAGATA+TGG - Chr3:87604645-87604664 MsG0380016764.01.T01:intron 20.0%
!!! TATATCTGTTTTTGTTTTGA+TGG - Chr3:87603100-87603119 MsG0380016764.01.T01:intron 20.0%
! AACATCCAAAATTCATACAT+GGG + Chr3:87603715-87603734 None:intergenic 25.0%
! AATCTGAATCCAAAGTAAAA+TGG + Chr3:87603974-87603993 None:intergenic 25.0%
! AATTGTCAAAATAACAGCTA+TGG - Chr3:87603876-87603895 MsG0380016764.01.T01:intron 25.0%
! AGAACAAAAATTAAAGTCAG+AGG + Chr3:87604585-87604604 None:intergenic 25.0%
! ATACAGTCTTCTAGATAAAA+AGG - Chr3:87604743-87604762 MsG0380016764.01.T01:CDS 25.0%
! ATGCAATCATATTTGCATAA+AGG + Chr3:87603609-87603628 None:intergenic 25.0%
! ATGTTAAAAGAATATGTTGC+AGG - Chr3:87604713-87604732 MsG0380016764.01.T01:CDS 25.0%
! CAATACAATGATTTCATGAA+TGG + Chr3:87604691-87604710 None:intergenic 25.0%
! TCACATAAATTTACAATCAC+AGG + Chr3:87603823-87603842 None:intergenic 25.0%
! TGTTAAAAGAATATGTTGCA+GGG - Chr3:87604714-87604733 MsG0380016764.01.T01:CDS 25.0%
! TTTGATGGAATTATGAATGT+TGG - Chr3:87603115-87603134 MsG0380016764.01.T01:intron 25.0%
!! AACTTTTTGTGAAATGAAGT+TGG + Chr3:87602711-87602730 None:intergenic 25.0%
!! AGGATTGTATTTGGAAATTT+TGG - Chr3:87603027-87603046 MsG0380016764.01.T01:intron 25.0%
!! TAAAACCCATGTATGAATTT+TGG - Chr3:87603707-87603726 MsG0380016764.01.T01:intron 25.0%
!! TCAATTTTCTGACCAAAAAT+AGG - Chr3:87604899-87604918 MsG0380016764.01.T01:CDS 25.0%
!!! ACATTGATAATTGTTGACTT+AGG - Chr3:87603240-87603259 MsG0380016764.01.T01:CDS 25.0%
!!! AGTTGTGAGAATGTTTTAAA+GGG - Chr3:87603297-87603316 MsG0380016764.01.T01:intron 25.0%
!!! ATAGCTGTTATTTTGACAAT+TGG + Chr3:87603877-87603896 None:intergenic 25.0%
!!! ATTTGGAAATTTTGGAGAAT+TGG - Chr3:87603035-87603054 MsG0380016764.01.T01:intron 25.0%
!!! CATTGATAATTGTTGACTTA+GGG - Chr3:87603241-87603260 MsG0380016764.01.T01:CDS 25.0%
!!! GTCTTTTTGGAGTAATTATT+TGG - Chr3:87604414-87604433 MsG0380016764.01.T01:intron 25.0%
!!! TAGTTGTGAGAATGTTTTAA+AGG - Chr3:87603296-87603315 MsG0380016764.01.T01:intron 25.0%
!!! TGTGTTTCACATTTTTAAGT+AGG - Chr3:87605175-87605194 MsG0380016764.01.T01:CDS 25.0%
!!! TGTTTTTTCATAAGTTATCG+CGG + Chr3:87603383-87603402 None:intergenic 25.0%
AAAGTAAGATGTAGACAAGA+GGG - Chr3:87605040-87605059 MsG0380016764.01.T01:CDS 30.0%
AACAAGTGCATAGTGATAAA+TGG + Chr3:87602637-87602656 None:intergenic 30.0%
AATATGATTGCATGTTGACA+TGG - Chr3:87603616-87603635 MsG0380016764.01.T01:intron 30.0%
ACAAGTGCATAGTGATAAAT+GGG + Chr3:87602636-87602655 None:intergenic 30.0%
AGAAATGCTATGAGAAATGT+TGG - Chr3:87605249-87605268 MsG0380016764.01.T01:exon 30.0%
CAACATCCAAAATTCATACA+TGG + Chr3:87603716-87603735 None:intergenic 30.0%
GAAATGCTATGAGAAATGTT+GGG - Chr3:87605250-87605269 MsG0380016764.01.T01:exon 30.0%
GGTTGAAGTGAAATTGATAA+GGG + Chr3:87602596-87602615 None:intergenic 30.0%
TAAAGTAAGATGTAGACAAG+AGG - Chr3:87605039-87605058 MsG0380016764.01.T01:CDS 30.0%
TAAGGCTAAAGGATTGTATT+TGG - Chr3:87603018-87603037 MsG0380016764.01.T01:intron 30.0%
TAATGAAAACAAAGTTACGG+AGG - Chr3:87604275-87604294 MsG0380016764.01.T01:intron 30.0%
TACTTTGGATTCAGATTTGA+AGG - Chr3:87603977-87603996 MsG0380016764.01.T01:intron 30.0%
TCATAGCATTTCTCAATCAA+CGG + Chr3:87605242-87605261 None:intergenic 30.0%
TGGTTGAAGTGAAATTGATA+AGG + Chr3:87602597-87602616 None:intergenic 30.0%
TGTCATGAAATCAATTTACC+AGG - Chr3:87604106-87604125 MsG0380016764.01.T01:intron 30.0%
TTTCTGACCAAAAATAGGAA+AGG - Chr3:87604904-87604923 MsG0380016764.01.T01:CDS 30.0%
! AACCATGAACAATGTCTTTT+TGG - Chr3:87604401-87604420 MsG0380016764.01.T01:intron 30.0%
! AAGTTGGTTAAAGTTGTTTG+AGG + Chr3:87602695-87602714 None:intergenic 30.0%
! ATCAAAATCCTCGAGATTTT+AGG - Chr3:87604507-87604526 MsG0380016764.01.T01:intron 30.0%
! GGTAAATTGATTTCATGACA+TGG + Chr3:87604106-87604125 None:intergenic 30.0%
! TGTATTTGAAATGCTGAACA+AGG - Chr3:87604236-87604255 MsG0380016764.01.T01:intron 30.0%
!! AATTCCTTCTGAAACTTTAC+TGG + Chr3:87604873-87604892 None:intergenic 30.0%
!! AATTTTGGAGGAGAAGATTT+TGG - Chr3:87602823-87602842 MsG0380016764.01.T01:exon 30.0%
!! ATTCCTTCTGAAACTTTACT+GGG + Chr3:87604872-87604891 None:intergenic 30.0%
!!! TGTTGATTCAGCTGAAATTT+TGG - Chr3:87602808-87602827 MsG0380016764.01.T01:three_prime_UTR 30.0%
AAATGTTGAGGCTCTTAAAG+TGG - Chr3:87602859-87602878 MsG0380016764.01.T01:CDS 35.0%
AACAAACAAATTGAGTGTCC+TGG + Chr3:87604127-87604146 None:intergenic 35.0%
AACTCGTAGTAGATAAGCAA+AGG + Chr3:87604374-87604393 None:intergenic 35.0%
ATAACATATGTGTGCTTTGC+AGG - Chr3:87604442-87604461 MsG0380016764.01.T01:intron 35.0%
ATAGTGATAAATGGGTAGCA+CGG + Chr3:87602628-87602647 None:intergenic 35.0%
ATTTCAGCTGAATCAACAGA+AGG + Chr3:87602806-87602825 None:intergenic 35.0%
CAGTCTTCTAGATAAAAAGG+AGG - Chr3:87604746-87604765 MsG0380016764.01.T01:CDS 35.0%
CATTGTGTTATGAGACAATG+GGG - Chr3:87602987-87603006 MsG0380016764.01.T01:CDS 35.0%
CTCCAAAAAGACATTGTTCA+TGG + Chr3:87604406-87604425 None:intergenic 35.0%
CTCTTAAAGTGGTTGTGTAT+GGG - Chr3:87602870-87602889 MsG0380016764.01.T01:CDS 35.0%
CTGAATCCAAAGTAAAATGG+TGG + Chr3:87603971-87603990 None:intergenic 35.0%
GAAGGATTCAAGAAATGTTG+AGG - Chr3:87602847-87602866 MsG0380016764.01.T01:CDS 35.0%
GCATTGTGTTATGAGACAAT+GGG - Chr3:87602986-87603005 MsG0380016764.01.T01:CDS 35.0%
GTGATGCACAAAAACAATGA+GGG - Chr3:87604207-87604226 MsG0380016764.01.T01:intron 35.0%
TAACATATGTGTGCTTTGCA+GGG - Chr3:87604443-87604462 MsG0380016764.01.T01:intron 35.0%
TGCATTGTGTTATGAGACAA+TGG - Chr3:87602985-87603004 MsG0380016764.01.T01:CDS 35.0%
TGGTTGTGTATGGGAAAATT+AGG - Chr3:87602879-87602898 MsG0380016764.01.T01:CDS 35.0%
TGTATGGGAAAATTAGGAGA+GGG - Chr3:87602885-87602904 MsG0380016764.01.T01:CDS 35.0%
TTACGGAGGAGAGAAATATA+AGG - Chr3:87604289-87604308 MsG0380016764.01.T01:intron 35.0%
TTCAGCATTTCAAATACAGC+AGG + Chr3:87604234-87604253 None:intergenic 35.0%
TTGAGCCTTAGTGTGTATTT+CGG - Chr3:87603790-87603809 MsG0380016764.01.T01:intron 35.0%
TTTGCTAGATGCTTCTTTGA+CGG - Chr3:87604003-87604022 MsG0380016764.01.T01:intron 35.0%
TTTGGATTCAGATTTGAAGG+TGG - Chr3:87603980-87603999 MsG0380016764.01.T01:intron 35.0%
! AAACAAGTTGTGTTGCTGAT+TGG - Chr3:87603507-87603526 MsG0380016764.01.T01:CDS 35.0%
! AACTGTGCAGTGTTGTTAAA+TGG - Chr3:87603904-87603923 MsG0380016764.01.T01:intron 35.0%
! AGTGATACTCTCTTTTCTAC+AGG - Chr3:87604173-87604192 MsG0380016764.01.T01:intron 35.0%
! GAGATATGGTTTGAAATCTG+AGG + Chr3:87602531-87602550 None:intergenic 35.0%
! GATTGGTAATCATGGCTATT+AGG - Chr3:87603524-87603543 MsG0380016764.01.T01:CDS 35.0%
! GTGATACTCTCTTTTCTACA+GGG - Chr3:87604174-87604193 MsG0380016764.01.T01:intron 35.0%
! TGAACACCACCATTTTACTT+TGG - Chr3:87603962-87603981 MsG0380016764.01.T01:intron 35.0%
! TGATTCAGCTGAAATTTTGG+AGG - Chr3:87602811-87602830 MsG0380016764.01.T01:three_prime_UTR 35.0%
! TGTTTGAGGTGAGAAAATTG+TGG + Chr3:87602681-87602700 None:intergenic 35.0%
!! AAAATTGTGGAGGGTGTTAA+TGG + Chr3:87602668-87602687 None:intergenic 35.0%
!! TTCCTTCTGAAACTTTACTG+GGG + Chr3:87604871-87604890 None:intergenic 35.0%
!!! ACTATTTTGACGGCATTTTG+TGG + Chr3:87604068-87604087 None:intergenic 35.0%
AAACTCACCTGGCAAAGATA+AGG + Chr3:87604533-87604552 None:intergenic 40.0%
AAGCTGAGAAGTTTGTGAAG+AGG - Chr3:87602918-87602937 MsG0380016764.01.T01:CDS 40.0%
ACGAATTCGTGGCAAAAGAA+GGG + Chr3:87602561-87602580 None:intergenic 40.0%
AGATAAGGCCTAAAATCTCG+AGG + Chr3:87604518-87604537 None:intergenic 40.0%
AGCACATCACACTCTTGTAA+AGG - Chr3:87604987-87605006 MsG0380016764.01.T01:CDS 40.0%
ATCCCCAGTAAAGTTTCAGA+AGG - Chr3:87604866-87604885 MsG0380016764.01.T01:CDS 40.0%
GATATCACCTTAGCAGCAAA+AGG - Chr3:87604840-87604859 MsG0380016764.01.T01:CDS 40.0%
GATTGATGAGGAACCAAATG+AGG - Chr3:87602943-87602962 MsG0380016764.01.T01:CDS 40.0%
GATTTGCATACAAACTCACC+TGG + Chr3:87604544-87604563 None:intergenic 40.0%
GCTCTTAAAGTGGTTGTGTA+TGG - Chr3:87602869-87602888 MsG0380016764.01.T01:CDS 40.0%
GGGTATTTGAGTAAGGCTAA+AGG - Chr3:87603007-87603026 MsG0380016764.01.T01:intron 40.0%
GGTGATGCACAAAAACAATG+AGG - Chr3:87604206-87604225 MsG0380016764.01.T01:intron 40.0%
GTGTATGGGAAAATTAGGAG+AGG - Chr3:87602884-87602903 MsG0380016764.01.T01:CDS 40.0%
TACGAATTCGTGGCAAAAGA+AGG + Chr3:87602562-87602581 None:intergenic 40.0%
TATGACGCTTGTCAAAACAC+CGG + Chr3:87603941-87603960 None:intergenic 40.0%
TCATCAAGAAATCCCTTCTG+TGG + Chr3:87604822-87604841 None:intergenic 40.0%
TCTTCCCGAAATACACACTA+AGG + Chr3:87603798-87603817 None:intergenic 40.0%
TGAGCCTTAGTGTGTATTTC+GGG - Chr3:87603791-87603810 MsG0380016764.01.T01:intron 40.0%
TGAGGTGAGAAAATTGTGGA+GGG + Chr3:87602677-87602696 None:intergenic 40.0%
TTAGTGTGTATTTCGGGAAG+AGG - Chr3:87603797-87603816 MsG0380016764.01.T01:intron 40.0%
TTGAGGTGAGAAAATTGTGG+AGG + Chr3:87602678-87602697 None:intergenic 40.0%
TTGTTGCAGATACGAATTCG+TGG + Chr3:87602572-87602591 None:intergenic 40.0%
! ACTCTCTTTTCTACAGGGTT+TGG - Chr3:87604179-87604198 MsG0380016764.01.T01:intron 40.0%
! GACAATGGGGTATTTGAGTA+AGG - Chr3:87603000-87603019 MsG0380016764.01.T01:intron 40.0%
! GTGTTGCTGATTGGTAATCA+TGG - Chr3:87603516-87603535 MsG0380016764.01.T01:CDS 40.0%
! TGAAGAGCTCTAACAAGAAG+AGG + Chr3:87603061-87603080 None:intergenic 40.0%
! TGTGAAGAGGTTGATTGATG+AGG - Chr3:87602931-87602950 MsG0380016764.01.T01:CDS 40.0%
! TTTTCTACAGGGTTTGGCTA+TGG - Chr3:87604185-87604204 MsG0380016764.01.T01:intron 40.0%
!! AGGTACTGAAACTGCAAAAG+CGG + Chr3:87602786-87602805 None:intergenic 40.0%
!! TTGTTGACTTAGGGTCTGTT+TGG - Chr3:87603250-87603269 MsG0380016764.01.T01:CDS 40.0%
!! TTTTAGGCCTTATCTTTGCC+AGG - Chr3:87604523-87604542 MsG0380016764.01.T01:intron 40.0%
AACCAAATGAGGTTGAGTGG+AGG - Chr3:87602954-87602973 MsG0380016764.01.T01:CDS 45.0%
AAGTTATCGCGGAGAGCTTA+TGG + Chr3:87603372-87603391 None:intergenic 45.0%
ACTCCAAACCATGCACTACA+AGG + Chr3:87605117-87605136 None:intergenic 45.0%
AGAAGGGAATTGGGGAGATA+TGG + Chr3:87602545-87602564 None:intergenic 45.0%
AGGAACCAAATGAGGTTGAG+TGG - Chr3:87602951-87602970 MsG0380016764.01.T01:CDS 45.0%
ATCTGAGGAGATGAAGAGAG+TGG + Chr3:87602516-87602535 None:intergenic 45.0%
CCTGAAGAGTTTCCACAGAA+GGG - Chr3:87604807-87604826 MsG0380016764.01.T01:CDS 45.0%
CGTGGCAAAAGAAGGGAATT+GGG + Chr3:87602554-87602573 None:intergenic 45.0%
CTCCAAACCATGCACTACAA+GGG + Chr3:87605116-87605135 None:intergenic 45.0%
GAGCCAGACAAGCAAAATCT+CGG + Chr3:87605140-87605159 None:intergenic 45.0%
GATGAATATTAGACGGCGCT+AGG - Chr3:87603841-87603860 MsG0380016764.01.T01:intron 45.0%
GTGGCAAAAGAAGGGAATTG+GGG + Chr3:87602553-87602572 None:intergenic 45.0%
TCGTGGCAAAAGAAGGGAAT+TGG + Chr3:87602555-87602574 None:intergenic 45.0%
TGCACAAATGCGTGTTGTAC+AGG - Chr3:87604320-87604339 MsG0380016764.01.T01:intron 45.0%
! AGATGTAGACAAGAGGGTAC+TGG - Chr3:87605046-87605065 MsG0380016764.01.T01:CDS 45.0%
! AGTCCGAGATTTTGCTTGTC+TGG - Chr3:87605134-87605153 MsG0380016764.01.T01:CDS 45.0%
! GCTTCTTTGACGGCATTTTG+TGG - Chr3:87604013-87604032 MsG0380016764.01.T01:intron 45.0%
! GGATGTTCCTTTTGCTGCTA+AGG + Chr3:87604850-87604869 None:intergenic 45.0%
! GGTACTGAAACTGCAAAAGC+GGG + Chr3:87602785-87602804 None:intergenic 45.0%
! TGGGTAGCACGGAATTTTGA+TGG + Chr3:87602617-87602636 None:intergenic 45.0%
!! GGAGGAGAAGATTTTGGAGA+AGG - Chr3:87602829-87602848 MsG0380016764.01.T01:exon 45.0%
AGCCCTTGTAGTGCATGGTT+TGG - Chr3:87605111-87605130 MsG0380016764.01.T01:CDS 50.0%
AGCCTCCACTCAACCTCATT+TGG + Chr3:87602959-87602978 None:intergenic 50.0%
CCCTTCTGTGGAAACTCTTC+AGG + Chr3:87604810-87604829 None:intergenic 50.0%
GCCTGAAGAGTTTCCACAGA+AGG - Chr3:87604806-87604825 MsG0380016764.01.T01:CDS 50.0%
GCTTGTCAAAACACCGGTCA+CGG + Chr3:87603935-87603954 None:intergenic 50.0%
GTGTGCTTTGCAGGGTGATT+TGG - Chr3:87604451-87604470 MsG0380016764.01.T01:intron 50.0%
TTGCTAGCCCTTGTAGTGCA+TGG - Chr3:87605106-87605125 MsG0380016764.01.T01:CDS 50.0%
! TGCTTTGCAGGGTGATTTGG+AGG - Chr3:87604454-87604473 MsG0380016764.01.T01:intron 50.0%
! TTGCAGGGTGATTTGGAGGA+GGG - Chr3:87604458-87604477 MsG0380016764.01.T01:intron 50.0%
! TTTGCAGGGTGATTTGGAGG+AGG - Chr3:87604457-87604476 MsG0380016764.01.T01:intron 50.0%
!! TGGAGGGTGTTAATGGAGTG+CGG + Chr3:87602661-87602680 None:intergenic 50.0%
TTAAATGGCGACGCCGTGAC+CGG - Chr3:87603919-87603938 MsG0380016764.01.T01:intron 55.0%
!! GGAGGGTGTTAATGGAGTGC+GGG + Chr3:87602660-87602679 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
Chr3 gene 87602480 87605271 87602480 ID=MsG0380016764.01;Name=MsG0380016764.01
Chr3 mRNA 87602480 87605271 87602480 ID=MsG0380016764.01.T01;Parent=MsG0380016764.01;Name=MsG0380016764.01.T01;_AED=0.38;_eAED=0.38;_QI=14|1|1|1|1|1|4|351|333
Chr3 exon 87602480 87603016 87602480 ID=MsG0380016764.01.T01:exon:22196;Parent=MsG0380016764.01.T01
Chr3 exon 87603207 87603287 87603207 ID=MsG0380016764.01.T01:exon:22195;Parent=MsG0380016764.01.T01
Chr3 exon 87603410 87603556 87603410 ID=MsG0380016764.01.T01:exon:22194;Parent=MsG0380016764.01.T01
Chr3 exon 87604670 87605271 87604670 ID=MsG0380016764.01.T01:exon:22193;Parent=MsG0380016764.01.T01
Chr3 five_prime_UTR 87605258 87605271 87605258 ID=MsG0380016764.01.T01:five_prime_utr;Parent=MsG0380016764.01.T01
Chr3 CDS 87604670 87605257 87604670 ID=MsG0380016764.01.T01:cds;Parent=MsG0380016764.01.T01
Chr3 CDS 87603410 87603556 87603410 ID=MsG0380016764.01.T01:cds;Parent=MsG0380016764.01.T01
Chr3 CDS 87603207 87603287 87603207 ID=MsG0380016764.01.T01:cds;Parent=MsG0380016764.01.T01
Chr3 CDS 87602831 87603016 87602831 ID=MsG0380016764.01.T01:cds;Parent=MsG0380016764.01.T01
Chr3 three_prime_UTR 87602480 87602830 87602480 ID=MsG0380016764.01.T01:three_prime_utr;Parent=MsG0380016764.01.T01
Gene Sequence

>MsG0380016764.01.T01

ATGGCTTCTACTGCAACAACCACTCTCTTCATCTCCTCAGATTTCAAACCATATCTCCCCAATTCCCTTCTTTTGCCACGAATTCGTATCTGCAACAAACCCTTATCAATTTCACTTCAACCATCAAAATTCCGTGCTACCCATTTATCACTATGCACTTGTTCCCGCACTCCATTAACACCCTCCACAATTTTCTCACCTCAAACAACTTTAACCAACTTCATTTCACAAAAAGTTTCATTTTTTCTCATTGGGTCGTTCATCTTCATCGCTTACTTCAGCAGAAAACCCGCTTTTGCAGTTTCAGTACCTTCTGTTGATTCAGCTGAAATTTTGGAGGAGAAGATTTTGGAGAAGGATTCAAGAAATGTTGAGGCTCTTAAAGTGGTTGTGTATGGGAAAATTAGGAGAGGGAAGTGTAAAGAAGCTGAGAAGTTTGTGAAGAGGTTGATTGATGAGGAACCAAATGAGGTTGAGTGGAGGCTTTTGCTTGCATTGTGTTATGAGACAATGGGGTATTTGAGTAAGGCTAAAGGATTGTATTTGGAAATTTTGGAGAATTGGCCTCTTCTTGTTAGAGCTCTTCATGGTTTGGCTATGGTGATGCACAAAAACAATGAGGGTCCTGCTGTATTTGAAATGCTGAACAAGGCTCTAGAGTTAGCTATTAATGAAAACAAAGTTACGGAGGAGAGAAATATAAGGATCTTAATTGCACAAATGCGTGTTGTACAGGGTGATTTGGAGGAGGGCTTGAAAAGATGTCAAGATTTGATTGATCAAAATCCTCGAGATTTTAGGCCTTATCTTTGCCAGGGAATAATATACAGTCTTCTAGATAAAAAGGAGGAAGCTGCAAAACAGTTTGAAACATATCAAGCTCTTGTGCCTGAAGAGTTTCCACAGAAGGGATTTCTTGATGATATCACCTTAGCAGCAAAAGGAACATCCCCAGTAAAGTTTCAGAAGGAATTCAGAAATCAATTTTCTGACCAAAAATAG

Protein sequence

>MsG0380016764.01.T01

MASTATTTLFISSDFKPYLPNSLLLPRIRICNKPLSISLQPSKFRATHLSLCTCSRTPLTPSTIFSPQTTLTNFISQKVSFFLIGSFIFIAYFSRKPAFAVSVPSVDSAEILEEKILEKDSRNVEALKVVVYGKIRRGKCKEAEKFVKRLIDEEPNEVEWRLLLALCYETMGYLSKAKGLYLEILENWPLLVRALHGLAMVMHKNNEGPAVFEMLNKALELAINENKVTEERNIRILIAQMRVVQGDLEEGLKRCQDLIDQNPRDFRPYLCQGIIYSLLDKKEEAAKQFETYQALVPEEFPQKGFLDDITLAAKGTSPVKFQKEFRNQFSDQK*