AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280008451.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280008451.01.T01 MTR_2g043230 97.244 254 7 0 1 254 1 254 0.0 499
MsG0280008451.01.T01 MTR_4g124910 74.409 254 64 1 1 254 1 253 2.70e-138 389
MsG0280008451.01.T01 MTR_3g110030 38.947 95 56 2 159 253 3 95 5.75e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280008451.01.T01 AT5G20720 70.312 256 71 2 1 254 1 253 8.10e-128 362
MsG0280008451.01.T01 AT5G20720 70.312 256 71 2 1 254 1 253 8.10e-128 362
MsG0280008451.01.T01 AT5G20720 70.312 256 71 2 1 254 1 253 8.10e-128 362
MsG0280008451.01.T01 AT5G20720 70.312 256 71 2 1 254 1 253 8.10e-128 362

Find 75 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGTCATTACCGGCGTATT+TGG 0.270458 2:-32128089 None:intergenic
CTCTCTCCAACAACAAATTA+AGG 0.304689 2:+32124987 MsG0280008451.01.T01:five_prime_UTR
TGTCATGGCTGTACTCTCTT+AGG 0.357059 2:+32128156 MsG0280008451.01.T01:CDS
TTCATTCTGCTCGACATGTT+AGG 0.390168 2:+32125218 MsG0280008451.01.T01:CDS
GTACACTGCAATCAAGCCTT+TGG 0.401887 2:+32126730 MsG0280008451.01.T01:intron
CAATCAAGCCTTTGGGTGAC+AGG 0.402537 2:+32126738 MsG0280008451.01.T01:CDS
GGCTTTGTTTGAGCACTTGA+TGG 0.405445 2:-32126815 None:intergenic
TATCAGAACTCTATCATTCA+AGG 0.405575 2:-32127158 None:intergenic
AAGCTTACTGTTCCAAATGA+AGG 0.410647 2:-32127679 None:intergenic
TTTGCCCTTGAAGTCATTAC+CGG 0.412440 2:-32128098 None:intergenic
TTGGACAGTGAAAGTGTAAA+TGG 0.412569 2:+32125114 MsG0280008451.01.T01:intron
ACCAAGGAGAAACCTTCATT+TGG 0.419164 2:+32127667 MsG0280008451.01.T01:CDS
TGCTTACCTTAATTTGTTGT+TGG 0.423268 2:-32124993 None:intergenic
TCCTGCTCGTAGGTCCTTCA+AGG 0.426073 2:+32125249 MsG0280008451.01.T01:CDS
GAATGATAGAGTTCTGATAA+AGG 0.428615 2:+32127162 MsG0280008451.01.T01:CDS
GAATGAAACTGAACACTTGA+TGG 0.432793 2:-32125202 None:intergenic
CCTTCACACTAATTTCAACT+TGG 0.433049 2:-32126889 None:intergenic
GTTGGAGAGAGTAGATAGAT+TGG 0.435259 2:-32124975 None:intergenic
CCTTGATATCATCAGTTTCA+AGG 0.440736 2:-32127126 None:intergenic
CAGGTGGTAGCAGTTGGTCC+CGG 0.442169 2:+32128001 MsG0280008451.01.T01:intron
TGGTCCCGGGCTTGTGGATG+AGG 0.443053 2:+32128015 MsG0280008451.01.T01:CDS
GCCTTCCTCATCCACAAGCC+CGG 0.445614 2:-32128020 None:intergenic
TCCAAATGAAGGTTTCTCCT+TGG 0.449870 2:-32127668 None:intergenic
AGGAGCGTTGCATCCTTTGA+AGG 0.455252 2:+32125172 MsG0280008451.01.T01:CDS
CCTTGAAACTGATGATATCA+AGG 0.481354 2:+32127126 MsG0280008451.01.T01:CDS
AATGACTTCAAGGGCAAAGA+TGG 0.482709 2:+32128103 MsG0280008451.01.T01:CDS
ATACGCCGGTAATGACTTCA+AGG 0.486053 2:+32128093 MsG0280008451.01.T01:CDS
TTTGACAATCAAAGCCTTGA+AGG 0.489756 2:-32125263 None:intergenic
TACACTGCAATCAAGCCTTT+GGG 0.491403 2:+32126731 MsG0280008451.01.T01:CDS
ATATATGCTGCAGATTGAAA+AGG 0.493775 2:+32127603 MsG0280008451.01.T01:intron
ATAGATTGGTTGAGATAAAG+TGG 0.496401 2:-32124961 None:intergenic
TTGAAGGATGATGACATTGT+TGG 0.496634 2:+32127100 MsG0280008451.01.T01:CDS
GGAGGTGAGGTGGTTGCCAT+TGG 0.498588 2:+32126842 MsG0280008451.01.T01:CDS
AAACCTTTGACTGTTACTCC+TGG 0.503322 2:+32128049 MsG0280008451.01.T01:CDS
TCTGCTCGACATGTTAGGAT+TGG 0.504109 2:+32125223 MsG0280008451.01.T01:CDS
TTCAAAGTATGCTGGTACTG+AGG 0.520573 2:+32127048 MsG0280008451.01.T01:CDS
AGGTGGTAGCAGTTGGTCCC+GGG 0.520936 2:+32128002 MsG0280008451.01.T01:intron
GCCTTGAAGGACCTACGAGC+AGG 0.526587 2:-32125250 None:intergenic
AGCAGTTGGTCCCGGGCTTG+TGG 0.527000 2:+32128009 MsG0280008451.01.T01:CDS
CTTGAGGAGTTCAGATGTCA+TGG 0.532308 2:+32128141 MsG0280008451.01.T01:CDS
AAGTGTCTTTCCTTCTCCAA+TGG 0.532556 2:-32126858 None:intergenic
GGTACTGAGGTGGACTTCAA+TGG 0.535132 2:+32127061 MsG0280008451.01.T01:CDS
ATCAGAACTCTATCATTCAA+GGG 0.538758 2:-32127157 None:intergenic
GAGTACAGAACTGTGTTCCC+AGG 0.548022 2:-32128067 None:intergenic
TTCCCAGGAGTAACAGTCAA+AGG 0.549921 2:-32128052 None:intergenic
CCCGGGCTTGTGGATGAGGA+AGG 0.557286 2:+32128019 MsG0280008451.01.T01:CDS
GTTGTCTATTCAAAGTATGC+TGG 0.560205 2:+32127040 MsG0280008451.01.T01:CDS
GAGGTGGTTGCCATTGGAGA+AGG 0.560230 2:+32126848 MsG0280008451.01.T01:CDS
AACCTTTGACTGTTACTCCT+GGG 0.561302 2:+32128050 MsG0280008451.01.T01:CDS
CCAAGTTGAAATTAGTGTGA+AGG 0.567424 2:+32126889 MsG0280008451.01.T01:CDS
ATTGGAGAAGGAAAGACACT+TGG 0.571434 2:+32126860 MsG0280008451.01.T01:CDS
CCTTCCTCATCCACAAGCCC+GGG 0.573609 2:-32128019 None:intergenic
GAATAGACAACTTGTGCACC+TGG 0.575907 2:-32127028 None:intergenic
AGGCGGTTTGTTTCTTACAG+AGG 0.589539 2:+32127642 MsG0280008451.01.T01:CDS
ATGTCACAGGTGGTAGCAGT+TGG 0.591495 2:+32127995 MsG0280008451.01.T01:intron
CAGAAGAGAAGACACAGAGT+GGG 0.596412 2:+32126783 MsG0280008451.01.T01:CDS
TGATGGTCGAAGTCCTTCAA+AGG 0.597517 2:-32125185 None:intergenic
CATGACATCTGAACTCCTCA+AGG 0.608574 2:-32128140 None:intergenic
ATAAGTACCCTGTCACCCAA+AGG 0.609358 2:-32126746 None:intergenic
AATCAAGCCTTTGGGTGACA+GGG 0.609714 2:+32126739 MsG0280008451.01.T01:CDS
GTTTCTTACAGAGGCAACCA+AGG 0.611857 2:+32127651 MsG0280008451.01.T01:CDS
AACAAAGCCTCAAGGAGGTG+AGG 0.613391 2:+32126829 MsG0280008451.01.T01:CDS
TATGCTGCAGATTGAAAAGG+CGG 0.624112 2:+32127606 MsG0280008451.01.T01:intron
AAAGTATGCTGGTACTGAGG+TGG 0.625111 2:+32127051 MsG0280008451.01.T01:CDS
TTGGAGAAGGAAAGACACTT+GGG 0.637420 2:+32126861 MsG0280008451.01.T01:CDS
GCAGAAGAGAAGACACAGAG+TGG 0.638010 2:+32126782 MsG0280008451.01.T01:CDS
AGTGCTCAAACAAAGCCTCA+AGG 0.651229 2:+32126821 MsG0280008451.01.T01:CDS
GGATTGGTAATCCTGCTCGT+AGG 0.652074 2:+32125239 MsG0280008451.01.T01:CDS
GCAACCACCTCACCTCCTTG+AGG 0.660430 2:-32126836 None:intergenic
AAAGCCTCAAGGAGGTGAGG+TGG 0.661356 2:+32126832 MsG0280008451.01.T01:CDS
TACGCCGGTAATGACTTCAA+GGG 0.678826 2:+32128094 MsG0280008451.01.T01:CDS
CAGCATCATCAATTTCAACG+AGG 0.718872 2:+32125152 MsG0280008451.01.T01:CDS
GCTCAAACAAAGCCTCAAGG+AGG 0.723993 2:+32126824 MsG0280008451.01.T01:CDS
ACAATGAAAATAAACCTTGG+GGG 0.730010 2:-32125302 None:intergenic
GTTCTGTACTCCAAATACGC+CGG 0.743437 2:+32128079 MsG0280008451.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATTTGAAAGATTATTT+CGG + Chr2:32126136-32126155 MsG0280008451.01.T01:intron 10.0%
!!! TGCTATTATAATGTTTTTTT+GGG + Chr2:32125372-32125391 MsG0280008451.01.T01:intron 15.0%
!!! TTCATTTTTTAATTTTGATC+TGG + Chr2:32127246-32127265 MsG0280008451.01.T01:intron 15.0%
!!! TTGCTATTATAATGTTTTTT+TGG + Chr2:32125371-32125390 MsG0280008451.01.T01:intron 15.0%
!! AAAAACATTGTTGTAATACT+TGG + Chr2:32127972-32127991 MsG0280008451.01.T01:intron 20.0%
!! AAACAATGAAAATAAACCTT+GGG - Chr2:32125307-32125326 None:intergenic 20.0%
!! AAATTGCATAATTGTTGTAT+TGG + Chr2:32126619-32126638 MsG0280008451.01.T01:intron 20.0%
!! AAATTGTGCATCAAAATTAA+AGG - Chr2:32126367-32126386 None:intergenic 20.0%
!! AATAAATTGCTCTTTCAAAT+TGG + Chr2:32126001-32126020 MsG0280008451.01.T01:intron 20.0%
!! AATTGTGCATCAAAATTAAA+GGG - Chr2:32126366-32126385 None:intergenic 20.0%
!! ATACATTAACTATAGAGATA+AGG - Chr2:32127817-32127836 None:intergenic 20.0%
!! ATCATAAAATTGTGAAAAGA+CGG - Chr2:32126669-32126688 None:intergenic 20.0%
!! GACAATTTGAAAAAGTAATT+CGG + Chr2:32125833-32125852 MsG0280008451.01.T01:intron 20.0%
!! TGCTATATTTAAATCTTAAG+TGG - Chr2:32127754-32127773 None:intergenic 20.0%
!!! AATTCTGAAAAGATGATTTT+GGG + Chr2:32126265-32126284 MsG0280008451.01.T01:intron 20.0%
!!! ATCGTTCTTTAATTTTTCTT+GGG + Chr2:32126950-32126969 MsG0280008451.01.T01:intron 20.0%
!!! ATTATGTTTTCAAACAAAGA+AGG - Chr2:32127715-32127734 None:intergenic 20.0%
!!! ATTTGAGTGTTATTGATAAT+TGG + Chr2:32125443-32125462 MsG0280008451.01.T01:intron 20.0%
! AACAATGAAAATAAACCTTG+GGG - Chr2:32125306-32125325 None:intergenic 25.0%
! AAGTTGAACAAAATATGACA+TGG - Chr2:32127489-32127508 None:intergenic 25.0%
! ACTTATGTTACACAATTTAG+AGG - Chr2:32125627-32125646 None:intergenic 25.0%
! AGTGATGAAAACAAAATCAA+CGG + Chr2:32127304-32127323 MsG0280008451.01.T01:intron 25.0%
! AGTTGAACAAAATATGACAT+GGG - Chr2:32127488-32127507 None:intergenic 25.0%
! GAAACAATGAAAATAAACCT+TGG - Chr2:32125308-32125327 None:intergenic 25.0%
! GAAGAAGTAGAAATTTACTA+GGG + Chr2:32125978-32125997 MsG0280008451.01.T01:intron 25.0%
! GTTGAATAACTAACTCAAAA+CGG - Chr2:32126441-32126460 None:intergenic 25.0%
! TGAAGAAGTAGAAATTTACT+AGG + Chr2:32125977-32125996 MsG0280008451.01.T01:intron 25.0%
! TTAAATCTTAAGTGGATGTT+GGG - Chr2:32127746-32127765 None:intergenic 25.0%
! TTTAAATCTTAAGTGGATGT+TGG - Chr2:32127747-32127766 None:intergenic 25.0%
!! AGTTTTGCTTATATTCTTGT+TGG + Chr2:32127199-32127218 MsG0280008451.01.T01:intron 25.0%
!! ATAAAGAGTAAACACCTTTT+TGG - Chr2:32126210-32126229 None:intergenic 25.0%
!! ATATAAGCAAAACTCTAAAG+AGG - Chr2:32127193-32127212 None:intergenic 25.0%
!! ATTTGAGTAAACAACCATTT+TGG + Chr2:32125551-32125570 MsG0280008451.01.T01:intron 25.0%
!! CAGGGTACTTATAAAAATTA+AGG + Chr2:32126757-32126776 MsG0280008451.01.T01:CDS 25.0%
!! TAAAGAGTAAACACCTTTTT+GGG - Chr2:32126209-32126228 None:intergenic 25.0%
!! TTAATTTTTCTTGGGAAGAA+GGG + Chr2:32126958-32126977 MsG0280008451.01.T01:intron 25.0%
!! TTCAACTTTATTTCTCATAC+AGG + Chr2:32127501-32127520 MsG0280008451.01.T01:intron 25.0%
!! TTTGAGTAAACAACCATTTT+GGG + Chr2:32125552-32125571 MsG0280008451.01.T01:intron 25.0%
!!! AAGTTGTTAATTTGCTTAGA+AGG + Chr2:32125469-32125488 MsG0280008451.01.T01:intron 25.0%
!!! AGGTTTATTTTCATTGTTTC+TGG + Chr2:32125308-32125327 MsG0280008451.01.T01:intron 25.0%
!!! ATTGAGTTTTGAAGAGATAA+TGG + Chr2:32125950-32125969 MsG0280008451.01.T01:intron 25.0%
!!! GAATTCTGAAAAGATGATTT+TGG + Chr2:32126264-32126283 MsG0280008451.01.T01:intron 25.0%
!!! GATCGTTCTTTAATTTTTCT+TGG + Chr2:32126949-32126968 MsG0280008451.01.T01:intron 25.0%
!!! TACAATTTTGATGTTGAATG+TGG + Chr2:32126329-32126348 MsG0280008451.01.T01:intron 25.0%
!!! TTTAATTTTTCTTGGGAAGA+AGG + Chr2:32126957-32126976 MsG0280008451.01.T01:intron 25.0%
AAATTAGAGTTCATCTCCAT+TGG - Chr2:32126072-32126091 None:intergenic 30.0%
AATTAAAGAACGATCATCGA+AGG - Chr2:32126944-32126963 None:intergenic 30.0%
ACAATGAAAATAAACCTTGG+GGG - Chr2:32125305-32125324 None:intergenic 30.0%
ACATAATTGTTAACCCACTT+GGG + Chr2:32126481-32126500 MsG0280008451.01.T01:intron 30.0%
ATATATGCTGCAGATTGAAA+AGG + Chr2:32127603-32127622 MsG0280008451.01.T01:intron 30.0%
ATCAGAACTCTATCATTCAA+GGG - Chr2:32127160-32127179 None:intergenic 30.0%
CGGATCATAATTTCAGAAAA+TGG - Chr2:32125702-32125721 None:intergenic 30.0%
GAACGATATTCATGAGAAAT+AGG - Chr2:32127931-32127950 None:intergenic 30.0%
GATGAAGTAGCAATTTACTA+GGG + Chr2:32126289-32126308 MsG0280008451.01.T01:intron 30.0%
GCATAATTCAGTGTAATCAT+AGG - Chr2:32125680-32125699 None:intergenic 30.0%
TATCAGAACTCTATCATTCA+AGG - Chr2:32127161-32127180 None:intergenic 30.0%
TCTGTTTATGTATTAACCAG+AGG + Chr2:32126415-32126434 MsG0280008451.01.T01:intron 30.0%
TCTTCTTGATTATGCATTTG+TGG + Chr2:32125504-32125523 MsG0280008451.01.T01:intron 30.0%
TGAAATTTCAAGACCCAAAA+TGG - Chr2:32125568-32125587 None:intergenic 30.0%
TGATGAAGTAGCAATTTACT+AGG + Chr2:32126288-32126307 MsG0280008451.01.T01:intron 30.0%
TTGCATAATTGTTGTATTGG+AGG + Chr2:32126622-32126641 MsG0280008451.01.T01:intron 30.0%
TTTCGCAAATTCAAGGTTAT+TGG + Chr2:32125858-32125877 MsG0280008451.01.T01:intron 30.0%
! AAAGAGTAAACCACCATTTT+GGG - Chr2:32125905-32125924 None:intergenic 30.0%
! ATAGATTGGTTGAGATAAAG+TGG - Chr2:32124964-32124983 None:intergenic 30.0%
! ATGTTTTGCCAGAATATGTT+CGG + Chr2:32127879-32127898 MsG0280008451.01.T01:intron 30.0%
! GAATGATAGAGTTCTGATAA+AGG + Chr2:32127162-32127181 MsG0280008451.01.T01:CDS 30.0%
! TTTATTTCTCATACAGGAGT+AGG + Chr2:32127507-32127526 MsG0280008451.01.T01:intron 30.0%
!! ATCCTTGTTGTTTATTGTGT+TGG + Chr2:32125095-32125114 MsG0280008451.01.T01:intron 30.0%
!! TGCTTACCTTAATTTGTTGT+TGG - Chr2:32124996-32125015 None:intergenic 30.0%
!! TTAATTTGCTTAGAAGGAAG+TGG + Chr2:32125475-32125494 MsG0280008451.01.T01:intron 30.0%
!! TTTTGCACATTTGAGGTTAT+TGG + Chr2:32126162-32126181 MsG0280008451.01.T01:intron 30.0%
!!! AGTTTTGAAGAGATAATGGT+GGG + Chr2:32125954-32125973 MsG0280008451.01.T01:intron 30.0%
!!! TGAAAAGCATCTTCTTTTGA+AGG + Chr2:32127084-32127103 MsG0280008451.01.T01:CDS 30.0%
!!! TGAGATGTCTTACTTTTTAG+AGG + Chr2:32127401-32127420 MsG0280008451.01.T01:intron 30.0%
AAGCTTACTGTTCCAAATGA+AGG - Chr2:32127682-32127701 None:intergenic 35.0%
ACTCACTTATCCATATTCAG+TGG - Chr2:32127287-32127306 None:intergenic 35.0%
AGACCTCAACAAAACATAAG+AGG - Chr2:32127550-32127569 None:intergenic 35.0%
AGATGAACTCTAATTTGAGG+CGG + Chr2:32126076-32126095 MsG0280008451.01.T01:intron 35.0%
AGTAGGATTCAAAGACACTA+TGG + Chr2:32127524-32127543 MsG0280008451.01.T01:intron 35.0%
ATTGTGAAAAGACGGAACTT+TGG - Chr2:32126661-32126680 None:intergenic 35.0%
CACATAATTGTTAACCCACT+TGG + Chr2:32126480-32126499 MsG0280008451.01.T01:intron 35.0%
CACGCATGGATAACAATTTA+TGG + Chr2:32127338-32127357 MsG0280008451.01.T01:intron 35.0%
CCTTCACACTAATTTCAACT+TGG - Chr2:32126892-32126911 None:intergenic 35.0%
CCTTGAAACTGATGATATCA+AGG + Chr2:32127126-32127145 MsG0280008451.01.T01:CDS 35.0%
CCTTGATATCATCAGTTTCA+AGG - Chr2:32127129-32127148 None:intergenic 35.0%
CGAAATTGAACCACTGAATA+TGG + Chr2:32127274-32127293 MsG0280008451.01.T01:intron 35.0%
CTCTCTCCAACAACAAATTA+AGG + Chr2:32124987-32125006 MsG0280008451.01.T01:five_prime_UTR 35.0%
GAATGAAACTGAACACTTGA+TGG - Chr2:32125205-32125224 None:intergenic 35.0%
GCATATATTAAACCAGTCAG+TGG - Chr2:32127591-32127610 None:intergenic 35.0%
GTCCAACACAATAAACAACA+AGG - Chr2:32125100-32125119 None:intergenic 35.0%
GTTGTCTATTCAAAGTATGC+TGG + Chr2:32127040-32127059 MsG0280008451.01.T01:CDS 35.0%
GTTTCATCTCCGTATAATAG+AGG - Chr2:32125761-32125780 None:intergenic 35.0%
TACAATCTCATGACCCAAAA+TGG + Chr2:32125889-32125908 MsG0280008451.01.T01:intron 35.0%
TATTCTTGTTGGATCCAAGT+TGG + Chr2:32127210-32127229 MsG0280008451.01.T01:intron 35.0%
TGCAAATTATCTGATCGTCA+AGG + Chr2:32127447-32127466 MsG0280008451.01.T01:intron 35.0%
TGGAGATGAACTCTAATTTG+AGG + Chr2:32126073-32126092 MsG0280008451.01.T01:intron 35.0%
TTCACACCACCTCTATTATA+CGG + Chr2:32125749-32125768 MsG0280008451.01.T01:intron 35.0%
TTCGGTATTTCGCAAATTCA+AGG + Chr2:32125851-32125870 MsG0280008451.01.T01:intron 35.0%
TTGAAGGATGATGACATTGT+TGG + Chr2:32127100-32127119 MsG0280008451.01.T01:CDS 35.0%
TTGTAATACTTGGATGTCAC+AGG + Chr2:32127982-32128001 MsG0280008451.01.T01:intron 35.0%
TTTACTAGGGCATGTGTTTA+AGG + Chr2:32126302-32126321 MsG0280008451.01.T01:intron 35.0%
TTTGACAATCAAAGCCTTGA+AGG - Chr2:32125266-32125285 None:intergenic 35.0%
! AATGTCGAAATGCGTCTTTT+AGG + Chr2:32126031-32126050 MsG0280008451.01.T01:intron 35.0%
! CAAAGAGTAAACCACCATTT+TGG - Chr2:32125906-32125925 None:intergenic 35.0%
! CCAAGTTGAAATTAGTGTGA+AGG + Chr2:32126889-32126908 MsG0280008451.01.T01:CDS 35.0%
! GGAGATGAAACTCTTATTTG+AGG + Chr2:32125770-32125789 MsG0280008451.01.T01:intron 35.0%
! TGTTGTTGTTGTTACAGAGA+GGG - Chr2:32125047-32125066 None:intergenic 35.0%
! TTGGACAGTGAAAGTGTAAA+TGG + Chr2:32125114-32125133 MsG0280008451.01.T01:intron 35.0%
! TTGTTGTTGTTGTTACAGAG+AGG - Chr2:32125048-32125067 None:intergenic 35.0%
! TTTTAATCAACGTCACTCGT+AGG + Chr2:32127849-32127868 MsG0280008451.01.T01:intron 35.0%
!! GTTTTGAGTACATTACCTTG+AGG + Chr2:32128125-32128144 MsG0280008451.01.T01:CDS 35.0%
!! TCGGTATTTTTGCACATTTG+AGG + Chr2:32126155-32126174 MsG0280008451.01.T01:intron 35.0%
!!! GAGTTTTGAAGAGATAATGG+TGG + Chr2:32125953-32125972 MsG0280008451.01.T01:intron 35.0%
AAACCTTTGACTGTTACTCC+TGG + Chr2:32128049-32128068 MsG0280008451.01.T01:CDS 40.0%
AACCTTTGACTGTTACTCCT+GGG + Chr2:32128050-32128069 MsG0280008451.01.T01:CDS 40.0%
AAGGCGGAAGAAAAAACTTC+AGG + Chr2:32127622-32127641 MsG0280008451.01.T01:CDS 40.0%
AAGTGTCTTTCCTTCTCCAA+TGG - Chr2:32126861-32126880 None:intergenic 40.0%
AATCTCATGACCCAAAATGG+TGG + Chr2:32125892-32125911 MsG0280008451.01.T01:intron 40.0%
AATGACTTCAAGGGCAAAGA+TGG + Chr2:32128103-32128122 MsG0280008451.01.T01:CDS 40.0%
AATTGTTAACCCACTTGGGT+TGG + Chr2:32126485-32126504 MsG0280008451.01.T01:intron 40.0%
ACCAAGGAGAAACCTTCATT+TGG + Chr2:32127667-32127686 MsG0280008451.01.T01:CDS 40.0%
ATCAAACTTGAGACCTTGAG+AGG - Chr2:32126546-32126565 None:intergenic 40.0%
ATTGGAGAAGGAAAGACACT+TGG + Chr2:32126860-32126879 MsG0280008451.01.T01:CDS 40.0%
CAGCATCATCAATTTCAACG+AGG + Chr2:32125152-32125171 MsG0280008451.01.T01:CDS 40.0%
CTAATCTAGCCCACCATAAT+TGG - Chr2:32126580-32126599 None:intergenic 40.0%
GTGATCTTTGTGTAGCTGTT+TGG - Chr2:32126463-32126482 None:intergenic 40.0%
GTTGGAGAGAGTAGATAGAT+TGG - Chr2:32124978-32124997 None:intergenic 40.0%
TAATACTTGGATGTCACAGG+TGG + Chr2:32127985-32128004 MsG0280008451.01.T01:intron 40.0%
TAATCGTGCCGAACATATTC+TGG - Chr2:32127890-32127909 None:intergenic 40.0%
TACACTGCAATCAAGCCTTT+GGG + Chr2:32126731-32126750 MsG0280008451.01.T01:CDS 40.0%
TACAGTCTCAAGTCCCAAAA+AGG + Chr2:32126193-32126212 MsG0280008451.01.T01:intron 40.0%
TATGCTGCAGATTGAAAAGG+CGG + Chr2:32127606-32127625 MsG0280008451.01.T01:intron 40.0%
TCATCTCCGTATAATAGAGG+TGG - Chr2:32125758-32125777 None:intergenic 40.0%
TCCAAATGAAGGTTTCTCCT+TGG - Chr2:32127671-32127690 None:intergenic 40.0%
TTAGAGTTCATCTCCATTGG+AGG - Chr2:32126069-32126088 None:intergenic 40.0%
TTCAAAGTATGCTGGTACTG+AGG + Chr2:32127048-32127067 MsG0280008451.01.T01:CDS 40.0%
TTCATTCTGCTCGACATGTT+AGG + Chr2:32125218-32125237 MsG0280008451.01.T01:CDS 40.0%
TTGGAGAAGGAAAGACACTT+GGG + Chr2:32126861-32126880 MsG0280008451.01.T01:CDS 40.0%
TTTGCCCTTGAAGTCATTAC+CGG - Chr2:32128101-32128120 None:intergenic 40.0%
! CGGAACTTTGGAAACTATCT+CGG - Chr2:32126649-32126668 None:intergenic 40.0%
! TCAAACAAAGAAGGTACAGC+AGG - Chr2:32127706-32127725 None:intergenic 40.0%
! TTGTTGTTACAGAGAGGGTT+TGG - Chr2:32125042-32125061 None:intergenic 40.0%
!! AACTCTTATTTGAGGCGTTG+TGG + Chr2:32125778-32125797 MsG0280008451.01.T01:intron 40.0%
!! ACTCTTATTTGAGGCGTTGT+GGG + Chr2:32125779-32125798 MsG0280008451.01.T01:intron 40.0%
!! GTCTCAAGTTTGATTTTCCC+CGG + Chr2:32126552-32126571 MsG0280008451.01.T01:intron 40.0%
!! TGGCCTCTTATGTTTTGTTG+AGG + Chr2:32127544-32127563 MsG0280008451.01.T01:intron 40.0%
!!! TGTGTTTTGTTTGTACAGCC+AGG + Chr2:32127010-32127029 MsG0280008451.01.T01:intron 40.0%
AACCACAATGCCCCTTTCAA+AGG - Chr2:32126109-32126128 None:intergenic 45.0%
AACTAACTCAAAACGGCCTC+TGG - Chr2:32126434-32126453 None:intergenic 45.0%
AATCAAGCCTTTGGGTGACA+GGG + Chr2:32126739-32126758 MsG0280008451.01.T01:CDS 45.0%
AGTGCTCAAACAAAGCCTCA+AGG + Chr2:32126821-32126840 MsG0280008451.01.T01:CDS 45.0%
ATAAGTACCCTGTCACCCAA+AGG - Chr2:32126749-32126768 None:intergenic 45.0%
ATACGCCGGTAATGACTTCA+AGG + Chr2:32128093-32128112 MsG0280008451.01.T01:CDS 45.0%
CAGAAGAGAAGACACAGAGT+GGG + Chr2:32126783-32126802 MsG0280008451.01.T01:CDS 45.0%
CATGACATCTGAACTCCTCA+AGG - Chr2:32128143-32128162 None:intergenic 45.0%
CTTGAGGAGTTCAGATGTCA+TGG + Chr2:32128141-32128160 MsG0280008451.01.T01:CDS 45.0%
GAAGTCATTACCGGCGTATT+TGG - Chr2:32128092-32128111 None:intergenic 45.0%
GAATAGACAACTTGTGCACC+TGG - Chr2:32127031-32127050 None:intergenic 45.0%
GCGGAAGAAAAAACTTCAGG+CGG + Chr2:32127625-32127644 MsG0280008451.01.T01:CDS 45.0%
GTACACTGCAATCAAGCCTT+TGG + Chr2:32126730-32126749 MsG0280008451.01.T01:intron 45.0%
GTGAAGCACAGACACAAACA+CGG - Chr2:32125734-32125753 None:intergenic 45.0%
GTTCTGTACTCCAAATACGC+CGG + Chr2:32128079-32128098 MsG0280008451.01.T01:CDS 45.0%
GTTTCTTACAGAGGCAACCA+AGG + Chr2:32127651-32127670 MsG0280008451.01.T01:CDS 45.0%
TACGCCGGTAATGACTTCAA+GGG + Chr2:32128094-32128113 MsG0280008451.01.T01:CDS 45.0%
TCTGCTCGACATGTTAGGAT+TGG + Chr2:32125223-32125242 MsG0280008451.01.T01:CDS 45.0%
TGATGGTCGAAGTCCTTCAA+AGG - Chr2:32125188-32125207 None:intergenic 45.0%
TGTCATGGCTGTACTCTCTT+AGG + Chr2:32128156-32128175 MsG0280008451.01.T01:CDS 45.0%
TTCCCAGGAGTAACAGTCAA+AGG - Chr2:32128055-32128074 None:intergenic 45.0%
TTGATTGCAGTGTACTGCAC+AGG - Chr2:32126725-32126744 None:intergenic 45.0%
! AAAGTATGCTGGTACTGAGG+TGG + Chr2:32127051-32127070 MsG0280008451.01.T01:CDS 45.0%
! AACTCTAATTTGAGGCGGTG+TGG + Chr2:32126081-32126100 MsG0280008451.01.T01:intron 45.0%
! ACTCTAATTTGAGGCGGTGT+GGG + Chr2:32126082-32126101 MsG0280008451.01.T01:intron 45.0%
! AGGCGGTTTGTTTCTTACAG+AGG + Chr2:32127642-32127661 MsG0280008451.01.T01:CDS 45.0%
! GCTTTTAGATAGCCACTGAC+TGG + Chr2:32127576-32127595 MsG0280008451.01.T01:intron 45.0%
! TGTAATCATAGGCGTCGTGT+CGG - Chr2:32125669-32125688 None:intergenic 45.0%
!! ATTTTCCCCGGTGCCAATTA+TGG + Chr2:32126564-32126583 MsG0280008451.01.T01:intron 45.0%
!! GGCTTTGTTTGAGCACTTGA+TGG - Chr2:32126818-32126837 None:intergenic 45.0%
!! TCAAATTAAATTAAATAAAA+TGG - Chr2:32125429-32125448 None:intergenic 5.0%
AACAAAGCCTCAAGGAGGTG+AGG + Chr2:32126829-32126848 MsG0280008451.01.T01:CDS 50.0%
AACCTTGGGGGTAACAACAG+TGG - Chr2:32125293-32125312 None:intergenic 50.0%
ATGTCACAGGTGGTAGCAGT+TGG + Chr2:32127995-32128014 MsG0280008451.01.T01:intron 50.0%
CAATCAAGCCTTTGGGTGAC+AGG + Chr2:32126738-32126757 MsG0280008451.01.T01:CDS 50.0%
CACAAACACGGACACAGACA+CGG - Chr2:32125722-32125741 None:intergenic 50.0%
GAGTACAGAACTGTGTTCCC+AGG - Chr2:32128070-32128089 None:intergenic 50.0%
GAGTTCATCTCCATTGGAGG+TGG - Chr2:32126066-32126085 None:intergenic 50.0%
GCAGAAGAGAAGACACAGAG+TGG + Chr2:32126782-32126801 MsG0280008451.01.T01:CDS 50.0%
GCTCAAACAAAGCCTCAAGG+AGG + Chr2:32126824-32126843 MsG0280008451.01.T01:CDS 50.0%
GTGATACACACCACCTCCAA+TGG + Chr2:32126053-32126072 MsG0280008451.01.T01:intron 50.0%
TAGCCCACCATAATTGGCAC+CGG - Chr2:32126574-32126593 None:intergenic 50.0%
! CGGTTGATATTGCACACGCA+TGG + Chr2:32127324-32127343 MsG0280008451.01.T01:intron 50.0%
! CGTTGTGGGTACTCTGAAAG+GGG + Chr2:32125793-32125812 MsG0280008451.01.T01:intron 50.0%
! GCGTTGTGGGTACTCTGAAA+GGG + Chr2:32125792-32125811 MsG0280008451.01.T01:intron 50.0%
! GGATTGGTAATCCTGCTCGT+AGG + Chr2:32125239-32125258 MsG0280008451.01.T01:CDS 50.0%
! GGTACTGAGGTGGACTTCAA+TGG + Chr2:32127061-32127080 MsG0280008451.01.T01:CDS 50.0%
! GTTGGATCCAAGTTGGCGAA+GGG + Chr2:32127217-32127236 MsG0280008451.01.T01:intron 50.0%
! TGTTGGATCCAAGTTGGCGA+AGG + Chr2:32127216-32127235 MsG0280008451.01.T01:intron 50.0%
!! AGGAGCGTTGCATCCTTTGA+AGG + Chr2:32125172-32125191 MsG0280008451.01.T01:CDS 50.0%
!! GTCCTTTGAAAGGGGCATTG+TGG + Chr2:32126104-32126123 MsG0280008451.01.T01:intron 50.0%
AAAGCCTCAAGGAGGTGAGG+TGG + Chr2:32126832-32126851 MsG0280008451.01.T01:CDS 55.0%
AGCCCACCATAATTGGCACC+GGG - Chr2:32126573-32126592 None:intergenic 55.0%
CTTGGAGTGTGCTCCTCTCA+AGG + Chr2:32126530-32126549 MsG0280008451.01.T01:intron 55.0%
CTTGGGGGTAACAACAGTGG+CGG - Chr2:32125290-32125309 None:intergenic 55.0%
GAGGTGGTTGCCATTGGAGA+AGG + Chr2:32126848-32126867 MsG0280008451.01.T01:CDS 55.0%
GGCGTTGTGGGTACTCTGAA+AGG + Chr2:32125791-32125810 MsG0280008451.01.T01:intron 55.0%
TCCTGCTCGTAGGTCCTTCA+AGG + Chr2:32125249-32125268 MsG0280008451.01.T01:CDS 55.0%
! CGGTGTGGGTCCTTTGAAAG+GGG + Chr2:32126096-32126115 MsG0280008451.01.T01:intron 55.0%
! CTTGAGAGGAGCACACTCCA+AGG - Chr2:32126532-32126551 None:intergenic 55.0%
! GCGGTGTGGGTCCTTTGAAA+GGG + Chr2:32126095-32126114 MsG0280008451.01.T01:intron 55.0%
! TCCCCGGTGCCAATTATGGT+GGG + Chr2:32126568-32126587 MsG0280008451.01.T01:intron 55.0%
! TTCCCCGGTGCCAATTATGG+TGG + Chr2:32126567-32126586 MsG0280008451.01.T01:intron 55.0%
!! TTAACCCACTTGGGTTGGCC+TGG + Chr2:32126490-32126509 MsG0280008451.01.T01:intron 55.0%
ACCACCACCCTTCGCCAACT+TGG - Chr2:32127227-32127246 None:intergenic 60.0%
ACCACCAGGCCAACCCAAGT+GGG - Chr2:32126497-32126516 None:intergenic 60.0%
AGGTGGTAGCAGTTGGTCCC+GGG + Chr2:32128002-32128021 MsG0280008451.01.T01:intron 60.0%
CAGGTGGTAGCAGTTGGTCC+CGG + Chr2:32128001-32128020 MsG0280008451.01.T01:intron 60.0%
CCTTCCTCATCCACAAGCCC+GGG - Chr2:32128022-32128041 None:intergenic 60.0%
CGCCACTGTTGTTACCCCCA+AGG + Chr2:32125288-32125307 MsG0280008451.01.T01:CDS 60.0%
GCAACCACCTCACCTCCTTG+AGG - Chr2:32126839-32126858 None:intergenic 60.0%
GCCCACCATAATTGGCACCG+GGG - Chr2:32126572-32126591 None:intergenic 60.0%
GCCTTCCTCATCCACAAGCC+CGG - Chr2:32128023-32128042 None:intergenic 60.0%
GCCTTGAAGGACCTACGAGC+AGG - Chr2:32125253-32125272 None:intergenic 60.0%
GGAGGTGAGGTGGTTGCCAT+TGG + Chr2:32126842-32126861 MsG0280008451.01.T01:CDS 60.0%
GGCGGTGTGGGTCCTTTGAA+AGG + Chr2:32126094-32126113 MsG0280008451.01.T01:intron 60.0%
! GGATCCAAGTTGGCGAAGGG+TGG + Chr2:32127220-32127239 MsG0280008451.01.T01:intron 60.0%
! TCCAAGTTGGCGAAGGGTGG+TGG + Chr2:32127223-32127242 MsG0280008451.01.T01:intron 60.0%
!! GTGGTGTTGGCTTGGGACCT+TGG + Chr2:32126512-32126531 MsG0280008451.01.T01:intron 60.0%
!! TGGCCTGGTGGTGTTGGCTT+GGG + Chr2:32126505-32126524 MsG0280008451.01.T01:intron 60.0%
!! TTGGCCTGGTGGTGTTGGCT+TGG + Chr2:32126504-32126523 MsG0280008451.01.T01:intron 60.0%
!! TTGGGTTGGCCTGGTGGTGT+TGG + Chr2:32126499-32126518 MsG0280008451.01.T01:intron 60.0%
AGCAGTTGGTCCCGGGCTTG+TGG + Chr2:32128009-32128028 MsG0280008451.01.T01:CDS 65.0%
CACCACCAGGCCAACCCAAG+TGG - Chr2:32126498-32126517 None:intergenic 65.0%
CCCGGGCTTGTGGATGAGGA+AGG + Chr2:32128019-32128038 MsG0280008451.01.T01:CDS 65.0%
GGTCCCAAGCCAACACCACC+AGG - Chr2:32126511-32126530 None:intergenic 65.0%
TGGTCCCGGGCTTGTGGATG+AGG + Chr2:32128015-32128034 MsG0280008451.01.T01:CDS 65.0%
! AGGCGTCGTGTCGGTGCTTC+AGG - Chr2:32125660-32125679 None:intergenic 65.0%
!! ACCCACTTGGGTTGGCCTGG+TGG + Chr2:32126493-32126512 MsG0280008451.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr2 gene 32124929 32128212 32124929 ID=MsG0280008451.01;Name=MsG0280008451.01
Chr2 mRNA 32124929 32128212 32124929 ID=MsG0280008451.01.T01;Parent=MsG0280008451.01;Name=MsG0280008451.01.T01;_AED=0.42;_eAED=0.42;_QI=91|1|1|1|0.8|0.66|6|35|254
Chr2 exon 32124929 32125008 32124929 ID=MsG0280008451.01.T01:exon:7082;Parent=MsG0280008451.01.T01
Chr2 exon 32125122 32125309 32125122 ID=MsG0280008451.01.T01:exon:7083;Parent=MsG0280008451.01.T01
Chr2 exon 32126731 32126910 32126731 ID=MsG0280008451.01.T01:exon:7084;Parent=MsG0280008451.01.T01
Chr2 exon 32127028 32127183 32127028 ID=MsG0280008451.01.T01:exon:7085;Parent=MsG0280008451.01.T01
Chr2 exon 32127616 32127693 32127616 ID=MsG0280008451.01.T01:exon:7086;Parent=MsG0280008451.01.T01
Chr2 exon 32128004 32128212 32128004 ID=MsG0280008451.01.T01:exon:7087;Parent=MsG0280008451.01.T01
Chr2 five_prime_UTR 32124929 32125008 32124929 ID=MsG0280008451.01.T01:five_prime_utr;Parent=MsG0280008451.01.T01
Chr2 five_prime_UTR 32125122 32125132 32125122 ID=MsG0280008451.01.T01:five_prime_utr;Parent=MsG0280008451.01.T01
Chr2 CDS 32125133 32125309 32125133 ID=MsG0280008451.01.T01:cds;Parent=MsG0280008451.01.T01
Chr2 CDS 32126731 32126910 32126731 ID=MsG0280008451.01.T01:cds;Parent=MsG0280008451.01.T01
Chr2 CDS 32127028 32127183 32127028 ID=MsG0280008451.01.T01:cds;Parent=MsG0280008451.01.T01
Chr2 CDS 32127616 32127693 32127616 ID=MsG0280008451.01.T01:cds;Parent=MsG0280008451.01.T01
Chr2 CDS 32128004 32128177 32128004 ID=MsG0280008451.01.T01:cds;Parent=MsG0280008451.01.T01
Chr2 three_prime_UTR 32128178 32128212 32128178 ID=MsG0280008451.01.T01:three_prime_utr;Parent=MsG0280008451.01.T01
Gene Sequence

>MsG0280008451.01.T01

ATGGCTTCTTCTCAGTTAACAGCATCATCAATTTCAACGAGGAGCGTTGCATCCTTTGAAGGACTTCGACCATCAAGTGTTCAGTTTCATTCTGCTCGACATGTTAGGATTGGTAATCCTGCTCGTAGGTCCTTCAAGGCTTTGATTGTCAAAGCCGCCACTGTTGTTACCCCCAAGTACACTGCAATCAAGCCTTTGGGTGACAGGGTACTTATAAAAATTAAGGAAGCAGAAGAGAAGACACAGAGTGGGATTTTGCTTCCATCAAGTGCTCAAACAAAGCCTCAAGGAGGTGAGGTGGTTGCCATTGGAGAAGGAAAGACACTTGGGAAGAACCAAGTTGAAATTAGTGTGAAGCCAGGTGCACAAGTTGTCTATTCAAAGTATGCTGGTACTGAGGTGGACTTCAATGGTGAAAAGCATCTTCTTTTGAAGGATGATGACATTGTTGGTATCCTTGAAACTGATGATATCAAGGATCTTAAACCCTTGAATGATAGAGTTCTGATAAAGATTGAAAAGGCGGAAGAAAAAACTTCAGGCGGTTTGTTTCTTACAGAGGCAACCAAGGAGAAACCTTCATTTGGAACAGTGGTAGCAGTTGGTCCCGGGCTTGTGGATGAGGAAGGCAATAGAAAACCTTTGACTGTTACTCCTGGGAACACAGTTCTGTACTCCAAATACGCCGGTAATGACTTCAAGGGCAAAGATGGTTTTGAGTACATTACCTTGAGGAGTTCAGATGTCATGGCTGTACTCTCTTAG

Protein sequence

>MsG0280008451.01.T01

MASSQLTASSISTRSVASFEGLRPSSVQFHSARHVRIGNPARRSFKALIVKAATVVTPKYTAIKPLGDRVLIKIKEAEEKTQSGILLPSSAQTKPQGGEVVAIGEGKTLGKNQVEISVKPGAQVVYSKYAGTEVDFNGEKHLLLKDDDIVGILETDDIKDLKPLNDRVLIKIEKAEEKTSGGLFLTEATKEKPSFGTVVAVGPGLVDEEGNRKPLTVTPGNTVLYSKYAGNDFKGKDGFEYITLRSSDVMAVLS*