AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880047232.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880047232.01.T01 MTR_4g123810 99.746 393 1 0 1 393 1 393 0.0 811
MsG0880047232.01.T01 MTR_2g046710 94.133 392 23 0 1 392 1 392 0.0 744
MsG0880047232.01.T01 MTR_7g110310 93.077 390 27 0 3 392 2 391 0.0 739
MsG0880047232.01.T01 MTR_7g102120 90.155 386 38 0 4 389 2 387 0.0 701
MsG0880047232.01.T01 MTR_1g063060 88.601 386 44 0 4 389 20 405 0.0 698
MsG0880047232.01.T01 MTR_1g063060 88.601 386 44 0 4 389 2 387 0.0 698
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880047232.01.T01 AT3G17390 92.802 389 28 0 4 392 2 390 0.0 730
MsG0880047232.01.T01 AT4G01850 92.288 389 30 0 4 392 2 390 0.0 727
MsG0880047232.01.T01 AT4G01850 92.288 389 30 0 4 392 2 390 0.0 727
MsG0880047232.01.T01 AT1G02500 92.802 389 28 0 4 392 2 390 0.0 725
MsG0880047232.01.T01 AT1G02500 92.802 389 28 0 4 392 2 390 0.0 725
MsG0880047232.01.T01 AT2G36880 89.637 386 40 0 4 389 2 387 0.0 701
MsG0880047232.01.T01 AT2G36880 89.637 386 40 0 4 389 2 387 0.0 701

Find 113 sgRNAs with CRISPR-Local

Find 121 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAGCAGAACTTTGATTTC+AGG 0.197060 8:+83633810 MsG0880047232.01.T01:CDS
ACCGCTGCTTATGGACATTT+TGG 0.240443 8:+83633893 MsG0880047232.01.T01:CDS
AAGTGGTGAAGCCTCTTAAA+TGG 0.268915 8:+83633942 MsG0880047232.01.T01:CDS
ACTAACTTGGTTATGGTCTT+TGG 0.272622 8:+83632942 MsG0880047232.01.T01:CDS
CCTTCTGGCCGTTTCGTCAT+TGG 0.275849 8:+83633500 MsG0880047232.01.T01:CDS
ATATTGAGGATTTCCTTATC+AGG 0.286841 8:-83633785 None:intergenic
TTCTTGAAGACCGCTGCTTA+TGG 0.331558 8:+83633884 MsG0880047232.01.T01:CDS
TCACGGACTCAGAGGTAAAT+AGG 0.346706 8:-83632812 None:intergenic
TGGCTCAAAGGCATCAATTC+AGG 0.350293 8:-83633203 None:intergenic
CATTGACACTTATGGTGGTT+GGG 0.358162 8:+83633565 MsG0880047232.01.T01:CDS
CACTAAGACTAACTTGGTTA+TGG 0.375645 8:+83632935 MsG0880047232.01.T01:CDS
ATCAGCAGCAATTTCATCAT+TGG 0.391335 8:-83633405 None:intergenic
CCACTCCTGTCAACCTTAGT+TGG 0.396089 8:-83633623 None:intergenic
CTCATAGTCAACCTTAGCCT+TGG 0.401903 8:-83632976 None:intergenic
AAGATCATCATTGACACTTA+TGG 0.412097 8:+83633557 MsG0880047232.01.T01:CDS
GGTTGGGGTGCACATGGTGG+TGG 0.415325 8:+83633581 MsG0880047232.01.T01:CDS
CTCACTGAGGTTCGCAAGAA+TGG 0.416183 8:+83633254 MsG0880047232.01.T01:CDS
TGTACACCCTGAGCAATATC+AGG 0.422659 8:-83633101 None:intergenic
CAGAACTTTGATTTCAGGCC+TGG 0.422664 8:+83633815 MsG0880047232.01.T01:CDS
CATGTTCTTGCAACCAAGCT+TGG 0.423263 8:+83633224 MsG0880047232.01.T01:CDS
AGCACAGTGTGGACACGAAC+AGG 0.424617 8:-83633353 None:intergenic
CACTCCTGTCAACCTTAGTT+GGG 0.427141 8:-83633622 None:intergenic
CATGGTGGTGGTGCTTTCTC+AGG 0.429997 8:+83633593 MsG0880047232.01.T01:CDS
GGTGACCAGGGTCACATGTT+TGG 0.432601 8:+83633161 MsG0880047232.01.T01:CDS
TAGGCCTTCTCCCATTTAAG+AGG 0.435035 8:-83633953 None:intergenic
TGCTGTCTACGTCCTGTTCA+AGG 0.435876 8:-83632893 None:intergenic
TCTTGAGGGGTGGCAATGGC+AGG 0.439456 8:+83633861 MsG0880047232.01.T01:CDS
GGGTTTGTTTCTGATGATGT+AGG 0.442184 8:+83633029 MsG0880047232.01.T01:CDS
GCTAGATGCTTGCCTTGAAC+AGG 0.443281 8:+83632881 MsG0880047232.01.T01:CDS
GTGCAAGTCTCCTATGCTAT+TGG 0.450997 8:+83633710 MsG0880047232.01.T01:CDS
ATTTGATCACAAAGCTTGTC+GGG 0.451366 8:-83632846 None:intergenic
GGAGGTCCTCACGGTGATGC+TGG 0.457428 8:+83633521 MsG0880047232.01.T01:CDS
CGTGATACCTGTAGAAAGAT+TGG 0.458044 8:+83633008 MsG0880047232.01.T01:CDS
TATCAACCTTGATCTCTTGA+GGG 0.465001 8:+83633847 MsG0880047232.01.T01:CDS
TCTGGCCGTTTCGTCATTGG+AGG 0.466208 8:+83633503 MsG0880047232.01.T01:CDS
GTCGGGATGACCCTCATTCA+CGG 0.475722 8:-83632829 None:intergenic
TCCGTGTTTGTTGACACATA+TGG 0.478554 8:+83633749 MsG0880047232.01.T01:CDS
GCAGAGTCCTGATATTGCTC+AGG 0.479924 8:+83633094 MsG0880047232.01.T01:CDS
CACGGTGATGCTGGTCTCAC+TGG 0.480147 8:+83633530 MsG0880047232.01.T01:CDS
CTCAGGAAAAGACCCAACTA+AGG 0.480659 8:+83633610 MsG0880047232.01.T01:CDS
TCATTGACACTTATGGTGGT+TGG 0.485121 8:+83633564 MsG0880047232.01.T01:CDS
AGTTCTGCTTCACAATATTG+AGG 0.485453 8:-83633799 None:intergenic
GGAGATTGGTGCTGGTGACC+AGG 0.495862 8:+83633148 MsG0880047232.01.T01:CDS
TTTGTTGACACATATGGTAC+AGG 0.499588 8:+83633755 MsG0880047232.01.T01:CDS
GATCTCTTGAGGGGTGGCAA+TGG 0.500232 8:+83633857 MsG0880047232.01.T01:CDS
CTATCAACCTTGATCTCTTG+AGG 0.502197 8:+83633846 MsG0880047232.01.T01:CDS
TTGGAATCAAGGTACTTCTC+AGG 0.503666 8:-83633458 None:intergenic
TATGGTGGTTGGGGTGCACA+TGG 0.503765 8:+83633575 MsG0880047232.01.T01:CDS
GATATTGCTCAGGGTGTACA+TGG 0.506200 8:+83633104 MsG0880047232.01.T01:CDS
AGTGGTGAAGCCTCTTAAAT+GGG 0.507063 8:+83633943 MsG0880047232.01.T01:CDS
TACCTCTGAGTCCGTGAATG+AGG 0.508814 8:+83632818 MsG0880047232.01.T01:CDS
TATTGAGGATTTCCTTATCA+GGG 0.514162 8:-83633784 None:intergenic
GATTTGATCACAAAGCTTGT+CGG 0.516163 8:-83632847 None:intergenic
GTGATACCTGTAGAAAGATT+GGG 0.517037 8:+83633009 MsG0880047232.01.T01:CDS
GGGAAGATGCTGACTTCACA+TGG 0.518285 8:+83633918 MsG0880047232.01.T01:CDS
AACAAACCCAATCTTTCTAC+AGG 0.520020 8:-83633015 None:intergenic
CAAGCTTGGTTGCAAGAACA+TGG 0.520123 8:-83633223 None:intergenic
TGCCACCCCTCAAGAGATCA+AGG 0.522728 8:-83633853 None:intergenic
TCACCAGCACCAATCTCCTC+AGG 0.523065 8:-83633143 None:intergenic
GCAAGAATGGTACATGCCCT+TGG 0.525475 8:+83633267 MsG0880047232.01.T01:CDS
AAGACCCAACTAAGGTTGAC+AGG 0.527684 8:+83633618 MsG0880047232.01.T01:CDS
TACAGGGAAGATCCCTGATA+AGG 0.528861 8:+83633772 MsG0880047232.01.T01:CDS
ATTGACACTTATGGTGGTTG+GGG 0.531448 8:+83633566 MsG0880047232.01.T01:CDS
GTGACTTGAGTCTTACCATC+AGG 0.541328 8:-83633296 None:intergenic
AGGTACTTCTCAGGAATCAC+AGG 0.555523 8:-83633449 None:intergenic
ACAAACACGGACAAAGGCTC+AGG 0.556094 8:-83633737 None:intergenic
TGAGATCACAACCAAGGCTA+AGG 0.559756 8:+83632965 MsG0880047232.01.T01:CDS
AGGTTGATAGAGATCATGCC+AGG 0.561815 8:-83633833 None:intergenic
AGTGAGACGAGCACCAAGCT+TGG 0.564512 8:-83633237 None:intergenic
TTCGTCATTGGAGGTCCTCA+CGG 0.564725 8:+83633512 MsG0880047232.01.T01:CDS
GCTAAGAGCATTGTTGCAAG+TGG 0.573042 8:+83633668 MsG0880047232.01.T01:CDS
ACCTCTGAGTCCGTGAATGA+GGG 0.576462 8:+83632819 MsG0880047232.01.T01:CDS
GAGGACCTCCAATGACGAAA+CGG 0.581864 8:-83633508 None:intergenic
TACCATCAGGTCTCAACCAA+GGG 0.583187 8:-83633283 None:intergenic
TGCTGACTTCACATGGGAAG+TGG 0.583414 8:+83633925 MsG0880047232.01.T01:CDS
CCAATGACGAAACGGCCAGA+AGG 0.587132 8:-83633500 None:intergenic
AGACCTGAGGAGATTGGTGC+TGG 0.592525 8:+83633140 MsG0880047232.01.T01:CDS
GTTGCAAGAACATGGCTCAA+AGG 0.593079 8:-83633215 None:intergenic
GAAGCCTCTTAAATGGGAGA+AGG 0.594387 8:+83633949 MsG0880047232.01.T01:CDS
AACTTGCACTAAGACTAACT+TGG 0.597085 8:+83632929 MsG0880047232.01.T01:CDS
CAATGACGAAACGGCCAGAA+GGG 0.599457 8:-83633499 None:intergenic
GGTGGTTGGGGTGCACATGG+TGG 0.599611 8:+83633578 MsG0880047232.01.T01:CDS
CCAACTAAGGTTGACAGGAG+TGG 0.608693 8:+83633623 MsG0880047232.01.T01:CDS
ATCATCATTGACACTTATGG+TGG 0.611203 8:+83633560 MsG0880047232.01.T01:CDS
TTACAATGACAATGGTGCCA+TGG 0.613346 8:+83633328 MsG0880047232.01.T01:CDS
GAGATTGGTGCTGGTGACCA+GGG 0.616783 8:+83633149 MsG0880047232.01.T01:CDS
ATCAACCTTGATCTCTTGAG+GGG 0.616833 8:+83633848 MsG0880047232.01.T01:CDS
AACCTTGATCTCTTGAGGGG+TGG 0.617023 8:+83633851 MsG0880047232.01.T01:CDS
GTGTCAACAAACACGGACAA+AGG 0.620531 8:-83633743 None:intergenic
GTGATGCTGGTCTCACTGGT+AGG 0.621865 8:+83633534 MsG0880047232.01.T01:CDS
CAGAGTCCTGATATTGCTCA+GGG 0.622287 8:+83633095 MsG0880047232.01.T01:CDS
ACCAAAATGTCCATAAGCAG+CGG 0.627915 8:-83633894 None:intergenic
TCTTGATGCTGACAACTGCA+AGG 0.629888 8:+83633052 MsG0880047232.01.T01:CDS
TGCCCTTGGTTGAGACCTGA+TGG 0.629900 8:+83633281 MsG0880047232.01.T01:CDS
CATAGCCAAACATGTGACCC+TGG 0.634752 8:-83633166 None:intergenic
CTCAGGCACACCAATAGCAT+AGG 0.635399 8:-83633720 None:intergenic
GGAGTGGAGCTTACATTGTG+AGG 0.635486 8:+83633639 MsG0880047232.01.T01:CDS
TTGTTGCAAGTGGACTTGCA+AGG 0.636672 8:+83633678 MsG0880047232.01.T01:CDS
ACCATATGTGTCAACAAACA+CGG 0.637061 8:-83633750 None:intergenic
TTACCATCAGGTCTCAACCA+AGG 0.641037 8:-83633284 None:intergenic
TTGTTGACACATATGGTACA+GGG 0.641493 8:+83633756 MsG0880047232.01.T01:CDS
GGACTCAGAGGTAAATAGGA+AGG 0.642281 8:-83632808 None:intergenic
TGAACAGGACGTAGACAGCA+AGG 0.644482 8:+83632896 MsG0880047232.01.T01:CDS
ACCCTCATTCACGGACTCAG+AGG 0.654997 8:-83632820 None:intergenic
CAATTCAGGAGTCTCATCAG+TGG 0.681033 8:-83633189 None:intergenic
GTGGACACGAACAGGAACCA+TGG 0.681073 8:-83633345 None:intergenic
GTGAGACCAGCATCACCGTG+AGG 0.705197 8:-83633527 None:intergenic
GTTGAGTATTACAATGACAA+TGG 0.708966 8:+83633320 MsG0880047232.01.T01:CDS
CTTTGGTGAGATCACAACCA+AGG 0.709193 8:+83632959 MsG0880047232.01.T01:CDS
GGAAGATGCTGACTTCACAT+GGG 0.715768 8:+83633919 MsG0880047232.01.T01:CDS
GCTTGGTGCTCGTCTCACTG+AGG 0.723004 8:+83633241 MsG0880047232.01.T01:CDS
GAGTAGAGATGAGCACAGTG+TGG 0.760940 8:-83633364 None:intergenic
TTGCAAGTGGACTTGCAAGG+AGG 0.760973 8:+83633681 MsG0880047232.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
AAGATCATCATTGACACTTA+TGG + Chr8:83633557-83633576 MsG0880047232.01.T01:CDS 30.0%
ATATTGAGGATTTCCTTATC+AGG - Chr8:83633788-83633807 None:intergenic 30.0%
GTTGAGTATTACAATGACAA+TGG + Chr8:83633320-83633339 MsG0880047232.01.T01:CDS 30.0%
TATTGAGGATTTCCTTATCA+GGG - Chr8:83633787-83633806 None:intergenic 30.0%
AACAAACCCAATCTTTCTAC+AGG - Chr8:83633018-83633037 None:intergenic 35.0%
AACTTGCACTAAGACTAACT+TGG + Chr8:83632929-83632948 MsG0880047232.01.T01:CDS 35.0%
ACCATATGTGTCAACAAACA+CGG - Chr8:83633753-83633772 None:intergenic 35.0%
ACTAACTTGGTTATGGTCTT+TGG + Chr8:83632942-83632961 MsG0880047232.01.T01:CDS 35.0%
AGAAGGGTTCAAGTGAAAAA+TGG - Chr8:83633486-83633505 None:intergenic 35.0%
AGTTCTGCTTCACAATATTG+AGG - Chr8:83633802-83633821 None:intergenic 35.0%
ATCAGCAGCAATTTCATCAT+TGG - Chr8:83633408-83633427 None:intergenic 35.0%
ATCATCATTGACACTTATGG+TGG + Chr8:83633560-83633579 MsG0880047232.01.T01:CDS 35.0%
ATTTGATCACAAAGCTTGTC+GGG - Chr8:83632849-83632868 None:intergenic 35.0%
CACTAAGACTAACTTGGTTA+TGG + Chr8:83632935-83632954 MsG0880047232.01.T01:CDS 35.0%
GATTTGATCACAAAGCTTGT+CGG - Chr8:83632850-83632869 None:intergenic 35.0%
GTGATACCTGTAGAAAGATT+GGG + Chr8:83633009-83633028 MsG0880047232.01.T01:CDS 35.0%
GTTCAAGTGAAAAATGGTCT+TGG - Chr8:83633480-83633499 None:intergenic 35.0%
TATCAACCTTGATCTCTTGA+GGG + Chr8:83633847-83633866 MsG0880047232.01.T01:CDS 35.0%
TCATCTTACAAAAAGACCTG+AGG + Chr8:83633127-83633146 MsG0880047232.01.T01:CDS 35.0%
TTGTTGACACATATGGTACA+GGG + Chr8:83633756-83633775 MsG0880047232.01.T01:CDS 35.0%
TTTGTTGACACATATGGTAC+AGG + Chr8:83633755-83633774 MsG0880047232.01.T01:CDS 35.0%
! ATTTTTCACTTGAACCCTTC+TGG + Chr8:83633485-83633504 MsG0880047232.01.T01:CDS 35.0%
! GAAAAATGGTCTTGGAATCA+AGG - Chr8:83633472-83633491 None:intergenic 35.0%
! TGAAGCAGAACTTTGATTTC+AGG + Chr8:83633810-83633829 MsG0880047232.01.T01:CDS 35.0%
!! TGCTTATGGACATTTTGGTA+GGG + Chr8:83633898-83633917 MsG0880047232.01.T01:CDS 35.0%
AAGTGGTGAAGCCTCTTAAA+TGG + Chr8:83633942-83633961 MsG0880047232.01.T01:CDS 40.0%
ACAAAAAGACCTGAGGAGAT+TGG + Chr8:83633134-83633153 MsG0880047232.01.T01:CDS 40.0%
ACCAAAATGTCCATAAGCAG+CGG - Chr8:83633897-83633916 None:intergenic 40.0%
AGTGGTGAAGCCTCTTAAAT+GGG + Chr8:83633943-83633962 MsG0880047232.01.T01:CDS 40.0%
ATCAACCTTGATCTCTTGAG+GGG + Chr8:83633848-83633867 MsG0880047232.01.T01:CDS 40.0%
ATTGACACTTATGGTGGTTG+GGG + Chr8:83633566-83633585 MsG0880047232.01.T01:CDS 40.0%
CATTGACACTTATGGTGGTT+GGG + Chr8:83633565-83633584 MsG0880047232.01.T01:CDS 40.0%
CGTGATACCTGTAGAAAGAT+TGG + Chr8:83633008-83633027 MsG0880047232.01.T01:CDS 40.0%
CTATCAACCTTGATCTCTTG+AGG + Chr8:83633846-83633865 MsG0880047232.01.T01:CDS 40.0%
TCATTGACACTTATGGTGGT+TGG + Chr8:83633564-83633583 MsG0880047232.01.T01:CDS 40.0%
! TCCGTGTTTGTTGACACATA+TGG + Chr8:83633749-83633768 MsG0880047232.01.T01:CDS 40.0%
! TTACAATGACAATGGTGCCA+TGG + Chr8:83633328-83633347 MsG0880047232.01.T01:CDS 40.0%
! TTGGAATCAAGGTACTTCTC+AGG - Chr8:83633461-83633480 None:intergenic 40.0%
!! CTGCTTATGGACATTTTGGT+AGG + Chr8:83633897-83633916 MsG0880047232.01.T01:CDS 40.0%
!! GGGTTTGTTTCTGATGATGT+AGG + Chr8:83633029-83633048 MsG0880047232.01.T01:CDS 40.0%
AAGACCCAACTAAGGTTGAC+AGG + Chr8:83633618-83633637 MsG0880047232.01.T01:CDS 45.0%
AGGTACTTCTCAGGAATCAC+AGG - Chr8:83633452-83633471 None:intergenic 45.0%
CAAGCTTGGTTGCAAGAACA+TGG - Chr8:83633226-83633245 None:intergenic 45.0%
CAATTCAGGAGTCTCATCAG+TGG - Chr8:83633192-83633211 None:intergenic 45.0%
CACTCCTGTCAACCTTAGTT+GGG - Chr8:83633625-83633644 None:intergenic 45.0%
CAGAGTCCTGATATTGCTCA+GGG + Chr8:83633095-83633114 MsG0880047232.01.T01:CDS 45.0%
CATGTTCTTGCAACCAAGCT+TGG + Chr8:83633224-83633243 MsG0880047232.01.T01:CDS 45.0%
CTCAGGAAAAGACCCAACTA+AGG + Chr8:83633610-83633629 MsG0880047232.01.T01:CDS 45.0%
CTCATAGTCAACCTTAGCCT+TGG - Chr8:83632979-83632998 None:intergenic 45.0%
CTTTGGTGAGATCACAACCA+AGG + Chr8:83632959-83632978 MsG0880047232.01.T01:CDS 45.0%
GAAGCCTCTTAAATGGGAGA+AGG + Chr8:83633949-83633968 MsG0880047232.01.T01:CDS 45.0%
GATATTGCTCAGGGTGTACA+TGG + Chr8:83633104-83633123 MsG0880047232.01.T01:CDS 45.0%
GGACTCAGAGGTAAATAGGA+AGG - Chr8:83632811-83632830 None:intergenic 45.0%
GTGACTTGAGTCTTACCATC+AGG - Chr8:83633299-83633318 None:intergenic 45.0%
GTGCAAGTCTCCTATGCTAT+TGG + Chr8:83633710-83633729 MsG0880047232.01.T01:CDS 45.0%
GTGTCAACAAACACGGACAA+AGG - Chr8:83633746-83633765 None:intergenic 45.0%
GTTGCAAGAACATGGCTCAA+AGG - Chr8:83633218-83633237 None:intergenic 45.0%
TACAGGGAAGATCCCTGATA+AGG + Chr8:83633772-83633791 MsG0880047232.01.T01:CDS 45.0%
TACCATCAGGTCTCAACCAA+GGG - Chr8:83633286-83633305 None:intergenic 45.0%
TAGGCCTTCTCCCATTTAAG+AGG - Chr8:83633956-83633975 None:intergenic 45.0%
TCACGGACTCAGAGGTAAAT+AGG - Chr8:83632815-83632834 None:intergenic 45.0%
TCTTGATGCTGACAACTGCA+AGG + Chr8:83633052-83633071 MsG0880047232.01.T01:CDS 45.0%
TGAGATCACAACCAAGGCTA+AGG + Chr8:83632965-83632984 MsG0880047232.01.T01:CDS 45.0%
TGTACACCCTGAGCAATATC+AGG - Chr8:83633104-83633123 None:intergenic 45.0%
TTACCATCAGGTCTCAACCA+AGG - Chr8:83633287-83633306 None:intergenic 45.0%
TTCTTGAAGACCGCTGCTTA+TGG + Chr8:83633884-83633903 MsG0880047232.01.T01:CDS 45.0%
! ACCGCTGCTTATGGACATTT+TGG + Chr8:83633893-83633912 MsG0880047232.01.T01:CDS 45.0%
! CAGAACTTTGATTTCAGGCC+TGG + Chr8:83633815-83633834 MsG0880047232.01.T01:CDS 45.0%
! TTGTTGCAAGTGGACTTGCA+AGG + Chr8:83633678-83633697 MsG0880047232.01.T01:CDS 45.0%
!! AGGTTGATAGAGATCATGCC+AGG - Chr8:83633836-83633855 None:intergenic 45.0%
!! GCTAAGAGCATTGTTGCAAG+TGG + Chr8:83633668-83633687 MsG0880047232.01.T01:CDS 45.0%
!! GGAAGATGCTGACTTCACAT+GGG + Chr8:83633919-83633938 MsG0880047232.01.T01:CDS 45.0%
!! TGGCTCAAAGGCATCAATTC+AGG - Chr8:83633206-83633225 None:intergenic 45.0%
AACCTTGATCTCTTGAGGGG+TGG + Chr8:83633851-83633870 MsG0880047232.01.T01:CDS 50.0%
ACAAACACGGACAAAGGCTC+AGG - Chr8:83633740-83633759 None:intergenic 50.0%
ACCTCTGAGTCCGTGAATGA+GGG + Chr8:83632819-83632838 MsG0880047232.01.T01:CDS 50.0%
CAATGACGAAACGGCCAGAA+GGG - Chr8:83633502-83633521 None:intergenic 50.0%
CATAGCCAAACATGTGACCC+TGG - Chr8:83633169-83633188 None:intergenic 50.0%
CCAACTAAGGTTGACAGGAG+TGG + Chr8:83633623-83633642 MsG0880047232.01.T01:CDS 50.0%
CCACTCCTGTCAACCTTAGT+TGG - Chr8:83633626-83633645 None:intergenic 50.0%
CTCACTGAGGTTCGCAAGAA+TGG + Chr8:83633254-83633273 MsG0880047232.01.T01:CDS 50.0%
CTCAGGCACACCAATAGCAT+AGG - Chr8:83633723-83633742 None:intergenic 50.0%
GAGGACCTCCAATGACGAAA+CGG - Chr8:83633511-83633530 None:intergenic 50.0%
GAGTAGAGATGAGCACAGTG+TGG - Chr8:83633367-83633386 None:intergenic 50.0%
GCAAGAATGGTACATGCCCT+TGG + Chr8:83633267-83633286 MsG0880047232.01.T01:CDS 50.0%
GCAGAGTCCTGATATTGCTC+AGG + Chr8:83633094-83633113 MsG0880047232.01.T01:CDS 50.0%
GCTAGATGCTTGCCTTGAAC+AGG + Chr8:83632881-83632900 MsG0880047232.01.T01:CDS 50.0%
GGAGTGGAGCTTACATTGTG+AGG + Chr8:83633639-83633658 MsG0880047232.01.T01:CDS 50.0%
TACCTCTGAGTCCGTGAATG+AGG + Chr8:83632818-83632837 MsG0880047232.01.T01:CDS 50.0%
TGAACAGGACGTAGACAGCA+AGG + Chr8:83632896-83632915 MsG0880047232.01.T01:CDS 50.0%
TGCTGTCTACGTCCTGTTCA+AGG - Chr8:83632896-83632915 None:intergenic 50.0%
TTCGTCATTGGAGGTCCTCA+CGG + Chr8:83633512-83633531 MsG0880047232.01.T01:CDS 50.0%
! TTGCAAGTGGACTTGCAAGG+AGG + Chr8:83633681-83633700 MsG0880047232.01.T01:CDS 50.0%
!! GGGAAGATGCTGACTTCACA+TGG + Chr8:83633918-83633937 MsG0880047232.01.T01:CDS 50.0%
!! TGCTGACTTCACATGGGAAG+TGG + Chr8:83633925-83633944 MsG0880047232.01.T01:CDS 50.0%
ACCCTCATTCACGGACTCAG+AGG - Chr8:83632823-83632842 None:intergenic 55.0%
AGACCTGAGGAGATTGGTGC+TGG + Chr8:83633140-83633159 MsG0880047232.01.T01:CDS 55.0%
AGCACAGTGTGGACACGAAC+AGG - Chr8:83633356-83633375 None:intergenic 55.0%
AGTGAGACGAGCACCAAGCT+TGG - Chr8:83633240-83633259 None:intergenic 55.0%
CCAATGACGAAACGGCCAGA+AGG - Chr8:83633503-83633522 None:intergenic 55.0%
CCTTCTGGCCGTTTCGTCAT+TGG + Chr8:83633500-83633519 MsG0880047232.01.T01:CDS 55.0%
GATCTCTTGAGGGGTGGCAA+TGG + Chr8:83633857-83633876 MsG0880047232.01.T01:CDS 55.0%
GGTGACCAGGGTCACATGTT+TGG + Chr8:83633161-83633180 MsG0880047232.01.T01:CDS 55.0%
GTCGGGATGACCCTCATTCA+CGG - Chr8:83632832-83632851 None:intergenic 55.0%
GTGGACACGAACAGGAACCA+TGG - Chr8:83633348-83633367 None:intergenic 55.0%
TATGGTGGTTGGGGTGCACA+TGG + Chr8:83633575-83633594 MsG0880047232.01.T01:CDS 55.0%
TCACCAGCACCAATCTCCTC+AGG - Chr8:83633146-83633165 None:intergenic 55.0%
TCTGGCCGTTTCGTCATTGG+AGG + Chr8:83633503-83633522 MsG0880047232.01.T01:CDS 55.0%
TGCCACCCCTCAAGAGATCA+AGG - Chr8:83633856-83633875 None:intergenic 55.0%
TGCCCTTGGTTGAGACCTGA+TGG + Chr8:83633281-83633300 MsG0880047232.01.T01:CDS 55.0%
! GTGATGCTGGTCTCACTGGT+AGG + Chr8:83633534-83633553 MsG0880047232.01.T01:CDS 55.0%
!! CATGGTGGTGGTGCTTTCTC+AGG + Chr8:83633593-83633612 MsG0880047232.01.T01:CDS 55.0%
!! GAGATTGGTGCTGGTGACCA+GGG + Chr8:83633149-83633168 MsG0880047232.01.T01:CDS 55.0%
GTGAGACCAGCATCACCGTG+AGG - Chr8:83633530-83633549 None:intergenic 60.0%
TCTTGAGGGGTGGCAATGGC+AGG + Chr8:83633861-83633880 MsG0880047232.01.T01:CDS 60.0%
! CACGGTGATGCTGGTCTCAC+TGG + Chr8:83633530-83633549 MsG0880047232.01.T01:CDS 60.0%
!! GCTTGGTGCTCGTCTCACTG+AGG + Chr8:83633241-83633260 MsG0880047232.01.T01:CDS 60.0%
!! GGAGATTGGTGCTGGTGACC+AGG + Chr8:83633148-83633167 MsG0880047232.01.T01:CDS 60.0%
GGAGGTCCTCACGGTGATGC+TGG + Chr8:83633521-83633540 MsG0880047232.01.T01:CDS 65.0%
GGTGGTTGGGGTGCACATGG+TGG + Chr8:83633578-83633597 MsG0880047232.01.T01:CDS 65.0%
GGTTGGGGTGCACATGGTGG+TGG + Chr8:83633581-83633600 MsG0880047232.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr8 gene 83632795 83633976 83632795 ID=MsG0880047232.01;Name=MsG0880047232.01
Chr8 mRNA 83632795 83633976 83632795 ID=MsG0880047232.01.T01;Parent=MsG0880047232.01;Name=MsG0880047232.01.T01;_AED=0.27;_eAED=0.27;_QI=0|-1|0|1|-1|1|1|0|393
Chr8 exon 83632795 83633976 83632795 ID=MsG0880047232.01.T01:exon:20774;Parent=MsG0880047232.01.T01
Chr8 CDS 83632795 83633976 83632795 ID=MsG0880047232.01.T01:cds;Parent=MsG0880047232.01.T01
Gene Sequence

>MsG0880047232.01.T01

ATGGCAGCAGAGACCTTCCTATTTACCTCTGAGTCCGTGAATGAGGGTCATCCCGACAAGCTTTGTGATCAAATCTCTGATGCTGTGCTAGATGCTTGCCTTGAACAGGACGTAGACAGCAAGGTTGCATGTGAAACTTGCACTAAGACTAACTTGGTTATGGTCTTTGGTGAGATCACAACCAAGGCTAAGGTTGACTATGAGAAAATTGTGCGTGATACCTGTAGAAAGATTGGGTTTGTTTCTGATGATGTAGGTCTTGATGCTGACAACTGCAAGGTTCTTGTCAACATTGAGCAGCAGAGTCCTGATATTGCTCAGGGTGTACATGGTCATCTTACAAAAAGACCTGAGGAGATTGGTGCTGGTGACCAGGGTCACATGTTTGGCTATGCCACTGATGAGACTCCTGAATTGATGCCTTTGAGCCATGTTCTTGCAACCAAGCTTGGTGCTCGTCTCACTGAGGTTCGCAAGAATGGTACATGCCCTTGGTTGAGACCTGATGGTAAGACTCAAGTCACTGTTGAGTATTACAATGACAATGGTGCCATGGTTCCTGTTCGTGTCCACACTGTGCTCATCTCTACTCAACATGATGAGACTGTTACCAATGATGAAATTGCTGCTGATCTCAAAGAGCATGTTATAAAGCCTGTGATTCCTGAGAAGTACCTTGATTCCAAGACCATTTTTCACTTGAACCCTTCTGGCCGTTTCGTCATTGGAGGTCCTCACGGTGATGCTGGTCTCACTGGTAGGAAGATCATCATTGACACTTATGGTGGTTGGGGTGCACATGGTGGTGGTGCTTTCTCAGGAAAAGACCCAACTAAGGTTGACAGGAGTGGAGCTTACATTGTGAGGCAAGCTGCTAAGAGCATTGTTGCAAGTGGACTTGCAAGGAGGTGCATTGTGCAAGTCTCCTATGCTATTGGTGTGCCTGAGCCTTTGTCCGTGTTTGTTGACACATATGGTACAGGGAAGATCCCTGATAAGGAAATCCTCAATATTGTGAAGCAGAACTTTGATTTCAGGCCTGGCATGATCTCTATCAACCTTGATCTCTTGAGGGGTGGCAATGGCAGGTTCTTGAAGACCGCTGCTTATGGACATTTTGGTAGGGAAGATGCTGACTTCACATGGGAAGTGGTGAAGCCTCTTAAATGGGAGAAGGCCTAA
Protein sequence

>MsG0880047232.01.T01

MAAETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDVDSKVACETCTKTNLVMVFGEITTKAKVDYEKIVRDTCRKIGFVSDDVGLDADNCKVLVNIEQQSPDIAQGVHGHLTKRPEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCPWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDSKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYGTGKIPDKEILNIVKQNFDFRPGMISINLDLLRGGNGRFLKTAAYGHFGREDADFTWEVVKPLKWEKA*