AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280009544.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280009544.01.T01 MTR_2g066050 93.402 485 9 1 1 462 1 485 0.0 916
MsG0280009544.01.T01 MTR_7g056830 44.118 408 198 4 53 435 10 412 4.32e-104 317
MsG0280009544.01.T01 MTR_6g082080 44.389 401 193 4 53 428 10 405 5.66e-104 317
MsG0280009544.01.T01 MTR_4g077370 76.142 197 47 0 53 249 250 446 4.29e-103 315
MsG0280009544.01.T01 MTR_4g077370 68.468 222 46 4 53 269 2 204 4.73e-96 297
MsG0280009544.01.T01 MTR_5g069330 33.907 407 233 7 53 431 3 401 4.43e-66 218
MsG0280009544.01.T01 MTR_5g069330 33.990 406 232 7 53 430 7 404 5.30e-66 218
MsG0280009544.01.T01 MTR_3g467550 36.597 429 216 13 9 392 71 488 7.56e-65 219
MsG0280009544.01.T01 MTR_3g467550 39.266 354 175 9 75 392 108 457 7.55e-64 216
MsG0280009544.01.T01 MTR_3g049990 36.639 363 200 4 53 388 152 511 2.09e-62 216
MsG0280009544.01.T01 MTR_1g022305 35.696 381 198 10 53 429 3 340 3.55e-61 207
MsG0280009544.01.T01 MTR_2g041140 37.363 364 197 5 53 388 141 501 1.10e-60 211
MsG0280009544.01.T01 MTR_2g100230 34.595 370 208 7 53 393 96 460 1.74e-59 203
MsG0280009544.01.T01 MTR_7g109720 35.695 367 199 8 53 388 232 592 3.80e-59 207
MsG0280009544.01.T01 MTR_4g079320 34.527 391 219 7 54 415 20 402 4.64e-57 202
MsG0280009544.01.T01 MTR_3g083690 34.005 397 213 10 41 393 133 524 1.11e-56 198
MsG0280009544.01.T01 MTR_6g005320 31.865 386 211 5 53 392 249 628 2.10e-55 196
MsG0280009544.01.T01 MTR_4g134170 31.701 388 211 5 53 392 287 668 7.41e-55 195
MsG0280009544.01.T01 MTR_1g095810 33.880 366 196 8 53 380 145 502 1.02e-53 190
MsG0280009544.01.T01 MTR_2g039960 33.333 360 212 5 53 389 41 395 3.05e-53 184
MsG0280009544.01.T01 MTR_4g125970 31.510 384 233 6 31 389 17 395 4.26e-53 184
MsG0280009544.01.T01 MTR_4g125970 31.510 384 233 6 31 389 34 412 9.14e-53 184
MsG0280009544.01.T01 MTR_3g467550 35.385 390 196 13 9 353 71 449 2.94e-52 183
MsG0280009544.01.T01 MTR_1g026830 33.151 365 200 8 53 380 147 504 6.19e-52 185
MsG0280009544.01.T01 MTR_1g054630 31.841 402 224 10 36 393 137 532 1.02e-51 184
MsG0280009544.01.T01 MTR_4g112340 33.690 374 207 9 65 405 109 474 2.25e-51 183
MsG0280009544.01.T01 MTR_2g099620 33.056 360 213 4 53 389 25 379 2.32e-51 179
MsG0280009544.01.T01 MTR_2g099620 33.056 360 213 4 53 389 41 395 2.81e-51 179
MsG0280009544.01.T01 MTR_8g018400 32.609 368 220 4 53 397 41 403 6.80e-51 178
MsG0280009544.01.T01 MTR_2g007000 32.796 372 210 8 53 389 504 870 1.03e-50 186
MsG0280009544.01.T01 MTR_2g055850 34.160 363 194 9 50 377 88 440 1.71e-50 180
MsG0280009544.01.T01 MTR_7g076820 31.856 361 212 5 48 381 141 494 2.02e-50 179
MsG0280009544.01.T01 MTR_7g076830 31.579 361 213 5 48 381 134 487 2.54e-50 179
MsG0280009544.01.T01 MTR_7g076800 31.579 361 213 5 48 381 132 485 3.01e-50 179
MsG0280009544.01.T01 MTR_4g105100 31.034 377 226 7 53 400 202 573 1.36e-49 179
MsG0280009544.01.T01 MTR_5g027840 31.127 408 239 7 26 399 79 478 2.53e-49 176
MsG0280009544.01.T01 MTR_1g012420 30.914 372 221 10 51 393 45 409 7.14e-49 173
MsG0280009544.01.T01 MTR_3g107420 31.452 372 219 10 51 393 45 409 8.89e-48 170
MsG0280009544.01.T01 MTR_4g114120 32.648 389 207 11 64 403 154 536 1.02e-47 174
MsG0280009544.01.T01 MTR_2g438110 29.223 373 228 5 52 397 33 396 1.17e-47 169
MsG0280009544.01.T01 MTR_2g032630 33.600 375 200 10 53 389 496 859 1.37e-47 176
MsG0280009544.01.T01 MTR_7g057250 30.549 455 209 12 24 378 133 580 1.83e-47 175
MsG0280009544.01.T01 MTR_5g090120 33.060 366 208 7 54 389 82 440 1.18e-46 171
MsG0280009544.01.T01 MTR_3g449250 33.060 366 208 6 54 389 91 449 1.36e-46 170
MsG0280009544.01.T01 MTR_3g449250 33.060 366 208 6 54 389 91 449 2.51e-46 169
MsG0280009544.01.T01 MTR_5g092560 34.451 328 176 8 77 371 100 421 3.45e-46 171
MsG0280009544.01.T01 MTR_4g010565 30.645 372 222 11 51 393 122 486 3.86e-46 167
MsG0280009544.01.T01 MTR_4g068990 33.043 345 193 8 78 390 101 439 1.26e-45 169
MsG0280009544.01.T01 MTR_6g005550 28.434 415 256 9 53 435 165 570 1.30e-44 166
MsG0280009544.01.T01 MTR_4g059460 26.721 494 252 10 35 426 26 511 4.49e-43 161
MsG0280009544.01.T01 MTR_6g033070 30.311 386 228 8 53 401 140 521 9.38e-43 159
MsG0280009544.01.T01 MTR_2g043360 27.664 441 212 9 51 389 39 474 9.32e-41 154
MsG0280009544.01.T01 MTR_6g039840 31.980 394 216 13 52 399 109 496 6.98e-40 152
MsG0280009544.01.T01 MTR_8g027775 30.028 363 215 7 54 378 103 464 2.50e-39 150
MsG0280009544.01.T01 MTR_8g097000 28.800 375 230 8 54 391 289 663 4.98e-39 150
MsG0280009544.01.T01 MTR_8g027770 27.981 411 242 8 50 406 198 608 7.42e-39 149
MsG0280009544.01.T01 MTR_8g032230 47.020 151 77 2 53 202 10 158 1.00e-38 138
MsG0280009544.01.T01 MTR_8g027780 29.917 361 216 6 54 377 107 467 1.61e-37 145
MsG0280009544.01.T01 MTR_1g009617 28.535 396 204 8 76 456 6 337 2.21e-37 141
MsG0280009544.01.T01 MTR_7g100820 28.736 348 218 8 69 392 150 491 2.36e-37 145
MsG0280009544.01.T01 MTR_1g083130 27.139 409 227 8 53 392 26 432 2.90e-36 141
MsG0280009544.01.T01 MTR_4g112320 32.566 304 165 8 129 405 2 292 3.85e-36 138
MsG0280009544.01.T01 MTR_3g071620 30.053 376 207 8 50 374 11 381 1.07e-35 140
MsG0280009544.01.T01 MTR_6g056080 34.431 334 178 10 78 376 128 455 1.32e-35 140
MsG0280009544.01.T01 MTR_4g049910 28.678 401 235 16 24 385 28 416 6.67e-35 135
MsG0280009544.01.T01 MTR_4g105100 30.154 325 193 7 53 348 202 521 5.73e-34 134
MsG0280009544.01.T01 MTR_5g077690 29.491 373 170 11 98 382 78 445 3.00e-33 132
MsG0280009544.01.T01 MTR_8g018370 29.429 333 184 7 83 391 3 308 2.14e-31 123
MsG0280009544.01.T01 MTR_1g102410 30.214 374 204 9 54 376 45 412 5.30e-31 126
MsG0280009544.01.T01 MTR_1g061970 30.370 405 226 14 24 377 50 449 5.69e-31 125
MsG0280009544.01.T01 MTR_0915s0010 28.772 285 173 4 69 330 5 282 2.24e-30 119
MsG0280009544.01.T01 MTR_8g027780 29.091 330 197 6 54 346 107 436 5.20e-30 122
MsG0280009544.01.T01 MTR_3g118120 26.463 393 226 11 53 388 132 518 4.77e-29 120
MsG0280009544.01.T01 MTR_6g039840 32.166 314 170 11 123 399 13 320 6.35e-27 113
MsG0280009544.01.T01 MTR_1g046570 25.990 404 218 11 71 407 9 398 6.60e-27 112
MsG0280009544.01.T01 MTR_4g459350 30.992 242 139 5 35 250 23 262 1.20e-26 108
MsG0280009544.01.T01 MTR_3g107420 30.986 213 139 5 51 259 45 253 2.26e-23 100
MsG0280009544.01.T01 MTR_4g068990 33.632 223 116 6 196 390 10 228 6.23e-23 102
MsG0280009544.01.T01 MTR_8g042690 25.424 354 209 10 78 390 43 382 1.15e-22 100
MsG0280009544.01.T01 MTR_5g092560 35.122 205 100 6 196 371 10 210 4.27e-22 99.8
MsG0280009544.01.T01 MTR_4g131750 27.841 352 195 10 68 366 97 442 7.81e-22 98.6
MsG0280009544.01.T01 MTR_2g043360 25.000 332 150 6 152 389 30 356 2.29e-21 97.1
MsG0280009544.01.T01 MTR_2g063080 31.278 227 129 6 15 223 77 294 3.20e-19 90.9
MsG0280009544.01.T01 MTR_2g063080 31.387 137 85 3 272 406 410 539 1.05e-13 73.6
MsG0280009544.01.T01 MTR_1g023070 37.705 122 74 1 308 429 38 157 8.83e-19 84.3
MsG0280009544.01.T01 MTR_1g023070 38.596 114 68 1 308 421 38 149 3.59e-17 80.5
MsG0280009544.01.T01 MTR_2g031570 53.968 63 29 0 53 115 72 134 4.37e-15 72.4
MsG0280009544.01.T01 MTR_8g079462 30.612 147 73 2 262 382 118 261 2.48e-14 74.3
MsG0280009544.01.T01 MTR_8g079452 41.429 70 41 0 314 383 24 93 1.65e-13 67.4
MsG0280009544.01.T01 MTR_0427s0010 30.049 203 113 8 211 390 1 197 9.36e-13 68.2
MsG0280009544.01.T01 MTR_8g062720 43.590 78 43 1 311 388 473 549 1.50e-11 67.0
MsG0280009544.01.T01 MTR_8g062720 26.667 225 152 5 53 264 91 315 2.21e-11 66.6
MsG0280009544.01.T01 MTR_2g082350 62.222 45 11 1 309 353 12 50 3.75e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280009544.01.T01 AT1G16280 62.555 454 140 5 31 458 38 487 0.0 568
MsG0280009544.01.T01 AT5G60990 42.822 411 195 4 53 428 10 415 1.34e-108 330
MsG0280009544.01.T01 AT4G16630 34.257 397 225 5 53 416 168 561 1.57e-59 209
MsG0280009544.01.T01 AT2G47330 37.330 367 193 8 53 388 229 589 3.05e-59 207
MsG0280009544.01.T01 AT1G55150 33.514 370 212 7 53 393 100 464 4.03e-58 199
MsG0280009544.01.T01 AT1G55150 33.514 370 212 7 53 393 125 489 1.03e-57 199
MsG0280009544.01.T01 AT3G18600 33.495 412 236 8 50 429 87 492 3.29e-57 199
MsG0280009544.01.T01 AT2G33730 32.474 388 208 6 53 392 314 695 7.68e-56 198
MsG0280009544.01.T01 AT1G77030 33.582 402 218 9 54 420 30 417 3.51e-55 197
MsG0280009544.01.T01 AT5G63120 32.979 376 216 6 54 399 167 536 1.37e-54 192
MsG0280009544.01.T01 AT5G65900 33.590 390 224 7 50 409 152 536 1.47e-54 193
MsG0280009544.01.T01 AT3G09620 35.632 348 201 9 54 389 399 735 2.83e-54 196
MsG0280009544.01.T01 AT3G09620 35.632 348 201 9 54 389 398 734 4.36e-54 195
MsG0280009544.01.T01 AT3G58510 32.552 384 209 10 53 393 152 528 1.16e-53 190
MsG0280009544.01.T01 AT3G58510 32.552 384 209 10 53 393 152 528 1.16e-53 190
MsG0280009544.01.T01 AT3G58510 32.552 384 209 10 53 393 152 528 1.16e-53 190
MsG0280009544.01.T01 AT1G20920 33.693 371 206 9 54 389 193 558 1.23e-53 193
MsG0280009544.01.T01 AT2G42520 34.069 408 214 13 41 401 148 547 1.28e-53 190
MsG0280009544.01.T01 AT2G42520 34.069 408 214 13 41 401 148 547 1.28e-53 190
MsG0280009544.01.T01 AT2G42520 34.069 408 214 13 41 401 148 547 1.28e-53 190
MsG0280009544.01.T01 AT5G51280 34.986 363 194 10 54 380 148 504 1.47e-53 189
MsG0280009544.01.T01 AT3G58570 32.220 419 224 13 28 393 114 525 1.71e-53 190
MsG0280009544.01.T01 AT1G20920 33.423 371 207 9 54 389 531 896 3.33e-53 193
MsG0280009544.01.T01 AT1G20920 33.423 371 207 9 54 389 531 896 3.33e-53 193
MsG0280009544.01.T01 AT1G20920 33.423 371 207 9 54 389 531 896 3.33e-53 193
MsG0280009544.01.T01 AT1G20920 33.423 371 207 9 54 389 531 896 3.33e-53 193
MsG0280009544.01.T01 AT1G20920 33.423 371 207 9 54 389 531 896 3.33e-53 193
MsG0280009544.01.T01 AT1G20920 33.423 371 207 9 54 389 531 896 3.33e-53 193
MsG0280009544.01.T01 AT4G33370 34.254 362 198 8 54 380 99 455 8.82e-53 186
MsG0280009544.01.T01 AT1G31970 31.662 379 220 5 34 378 98 471 2.57e-52 185
MsG0280009544.01.T01 AT2G45810 32.410 361 210 5 48 381 146 499 3.37e-52 184
MsG0280009544.01.T01 AT4G00660 30.871 379 228 5 48 399 123 494 4.99e-52 183
MsG0280009544.01.T01 AT4G00660 30.871 379 228 5 48 399 123 494 4.99e-52 183
MsG0280009544.01.T01 AT3G13920 32.791 369 218 5 45 389 22 384 4.99e-52 181
MsG0280009544.01.T01 AT3G13920 32.791 369 218 5 45 389 32 394 8.78e-52 181
MsG0280009544.01.T01 AT3G19760 30.295 373 224 5 52 397 35 398 2.74e-51 179
MsG0280009544.01.T01 AT3G13920 33.241 361 211 5 45 381 36 390 2.94e-51 179
MsG0280009544.01.T01 AT3G13920 33.056 360 213 4 45 381 32 386 3.60e-51 179
MsG0280009544.01.T01 AT1G54270 32.216 388 223 6 34 389 15 394 1.20e-50 177
MsG0280009544.01.T01 AT3G61240 31.909 351 209 4 54 381 126 469 1.22e-50 179
MsG0280009544.01.T01 AT3G61240 31.909 351 209 4 54 381 126 469 1.22e-50 179
MsG0280009544.01.T01 AT3G13920 32.791 369 213 6 45 389 32 389 1.93e-50 177
MsG0280009544.01.T01 AT1G72730 32.086 374 224 5 40 389 29 396 2.48e-50 177
MsG0280009544.01.T01 AT3G22310 34.140 372 198 9 53 389 117 476 2.11e-49 178
MsG0280009544.01.T01 AT3G22310 34.140 372 198 9 53 389 117 476 2.61e-49 178
MsG0280009544.01.T01 AT1G54270 32.216 388 218 7 34 389 15 389 4.36e-49 173
MsG0280009544.01.T01 AT1G51380 30.471 361 221 5 53 389 23 377 1.01e-48 172
MsG0280009544.01.T01 AT3G06480 33.671 395 201 12 40 389 421 799 2.40e-47 176
MsG0280009544.01.T01 AT5G26742 34.078 358 194 7 76 399 34 383 2.42e-47 173
MsG0280009544.01.T01 AT5G26742 33.708 356 195 6 78 399 128 476 3.19e-47 174
MsG0280009544.01.T01 AT5G26742 33.708 356 195 6 78 399 128 476 3.22e-47 174
MsG0280009544.01.T01 AT3G22330 31.608 367 214 7 53 389 105 464 4.10e-47 172
MsG0280009544.01.T01 AT5G14610 32.620 374 205 9 53 389 162 525 9.98e-46 169
MsG0280009544.01.T01 AT5G14610 32.620 374 205 9 53 389 170 533 1.01e-45 169
MsG0280009544.01.T01 AT5G14610 32.620 374 205 9 53 389 162 525 1.11e-45 169
MsG0280009544.01.T01 AT3G01540 32.190 379 210 9 53 394 159 527 1.20e-45 168
MsG0280009544.01.T01 AT3G01540 32.190 379 210 9 53 394 159 527 1.32e-45 168
MsG0280009544.01.T01 AT3G01540 32.190 379 210 9 53 394 159 527 1.32e-45 168
MsG0280009544.01.T01 AT3G01540 32.190 379 210 9 53 394 159 527 1.32e-45 168
MsG0280009544.01.T01 AT5G11170 30.108 372 224 10 51 393 45 409 6.96e-45 162
MsG0280009544.01.T01 AT5G11200 30.108 372 224 10 51 393 45 409 6.96e-45 162
MsG0280009544.01.T01 AT5G14610 33.427 356 190 9 71 389 49 394 7.29e-45 164
MsG0280009544.01.T01 AT5G14610 33.427 356 190 9 71 389 49 394 7.29e-45 164
MsG0280009544.01.T01 AT1G28180 34.731 334 178 6 83 384 4 329 7.45e-45 161
MsG0280009544.01.T01 AT5G14610 33.427 356 190 9 71 389 248 593 2.37e-44 166
MsG0280009544.01.T01 AT5G63630 31.250 384 222 9 34 377 35 416 1.56e-42 158
MsG0280009544.01.T01 AT5G63630 31.169 385 223 9 34 378 229 611 9.05e-42 158
MsG0280009544.01.T01 AT3G16840 28.706 425 206 10 52 382 191 612 2.80e-40 154
MsG0280009544.01.T01 AT3G16840 28.706 425 206 10 52 382 190 611 2.90e-40 154
MsG0280009544.01.T01 AT3G02065 30.435 368 219 7 53 388 111 473 9.54e-40 150
MsG0280009544.01.T01 AT3G02065 30.435 368 219 7 53 388 111 473 9.54e-40 150
MsG0280009544.01.T01 AT5G11200 28.537 410 222 15 51 393 45 450 1.46e-39 149
MsG0280009544.01.T01 AT5G54910 31.793 368 213 8 54 389 73 434 2.44e-39 151
MsG0280009544.01.T01 AT5G08620 28.710 411 252 8 7 377 33 442 2.47e-39 150
MsG0280009544.01.T01 AT1G71370 30.570 386 220 10 43 385 1 381 6.97e-39 148
MsG0280009544.01.T01 AT5G08610 29.319 382 232 7 34 377 363 744 1.96e-38 149
MsG0280009544.01.T01 AT3G09720 28.900 391 231 13 55 414 144 518 2.86e-38 146
MsG0280009544.01.T01 AT3G09720 28.900 391 231 13 55 414 144 518 2.86e-38 146
MsG0280009544.01.T01 AT5G11170 30.211 331 195 10 92 393 3 326 1.19e-37 141
MsG0280009544.01.T01 AT3G02065 30.882 340 198 7 81 388 2 336 2.57e-37 140
MsG0280009544.01.T01 AT5G63120 32.484 314 176 6 54 337 167 474 5.29e-37 142
MsG0280009544.01.T01 AT5G63120 32.484 314 176 6 54 337 167 474 5.73e-37 142
MsG0280009544.01.T01 AT5G63120 32.484 314 176 6 54 337 167 474 5.73e-37 142
MsG0280009544.01.T01 AT5G63120 32.484 314 176 6 54 337 167 474 5.73e-37 142
MsG0280009544.01.T01 AT2G07750 27.660 376 234 7 54 391 377 752 6.50e-37 145
MsG0280009544.01.T01 AT5G05450 30.971 381 210 9 42 374 4 379 2.22e-36 142
MsG0280009544.01.T01 AT1G63250 27.177 379 232 7 54 391 330 705 3.84e-36 142
MsG0280009544.01.T01 AT4G09730 30.343 379 216 8 54 389 114 487 3.19e-35 139
MsG0280009544.01.T01 AT5G62190 33.234 334 182 9 78 376 122 449 4.27e-35 139
MsG0280009544.01.T01 AT4G34910 26.477 457 231 11 53 413 47 494 9.35e-33 132
MsG0280009544.01.T01 AT3G06480 31.609 348 181 11 40 346 421 752 1.42e-32 132
MsG0280009544.01.T01 AT5G14610 30.909 330 183 9 53 349 170 487 1.28e-31 127
MsG0280009544.01.T01 AT4G15850 26.302 384 188 9 98 394 81 456 9.36e-31 125
MsG0280009544.01.T01 AT3G06980 29.545 396 220 11 53 395 375 764 9.51e-31 126
MsG0280009544.01.T01 AT1G12770 24.717 441 250 12 46 407 104 541 2.26e-30 124
MsG0280009544.01.T01 AT1G12770 24.717 441 250 12 46 407 104 541 2.26e-30 124
MsG0280009544.01.T01 AT3G53110 28.638 426 243 16 29 405 68 481 1.09e-29 121
MsG0280009544.01.T01 AT1G51380 27.953 254 176 3 53 305 23 270 1.34e-26 108
MsG0280009544.01.T01 AT1G71280 31.889 323 181 11 43 340 1 309 4.39e-26 108
MsG0280009544.01.T01 AT1G71280 31.692 325 183 11 43 342 1 311 4.80e-26 110
MsG0280009544.01.T01 AT1G51380 29.949 197 135 1 53 249 23 216 2.10e-25 106
MsG0280009544.01.T01 AT1G51380 29.949 197 135 1 53 249 23 216 2.92e-25 105
MsG0280009544.01.T01 AT2G40700 29.286 280 167 7 50 301 28 304 1.17e-22 101
MsG0280009544.01.T01 AT2G40700 40.566 106 58 1 289 389 361 466 2.32e-15 79.0
MsG0280009544.01.T01 AT5G11200 31.250 208 134 6 51 253 45 248 3.63e-22 99.4
MsG0280009544.01.T01 AT5G11200 41.237 97 52 2 302 393 372 468 4.55e-15 77.8
MsG0280009544.01.T01 AT1G28180 42.056 107 54 1 83 181 4 110 6.83e-15 71.6
MsG0280009544.01.T01 AT1G59990 42.308 78 44 1 311 388 462 538 5.19e-11 65.5

Find 121 sgRNAs with CRISPR-Local

Find 402 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTATTGATGTGCGATTT+TGG 0.069864 2:+54056961 MsG0280009544.01.T01:three_prime_UTR
AATGGGGAGTGAAGGGTTTA+TGG 0.199044 2:-54051154 None:intergenic
TTCAGTTGGCGGAGCAGTTT+AGG 0.203700 2:+54051490 MsG0280009544.01.T01:CDS
GTTGCACATCTTGTCTAAAA+TGG 0.208237 2:+54052783 MsG0280009544.01.T01:CDS
GTTTGAACAGTGGGAAATTT+TGG 0.223780 2:-54051116 None:intergenic
TTTCAAGTTGCCTTTCAATA+AGG 0.261004 2:-54056298 None:intergenic
GCGAAAACCGGAGCAATTTC+AGG 0.269457 2:-54051654 None:intergenic
CTTGTCTAAAATGGAAGATA+TGG 0.293998 2:+54052792 MsG0280009544.01.T01:CDS
TGCTACTCCTGGGAGGATTA+AGG 0.296531 2:+54051614 MsG0280009544.01.T01:CDS
GGTCCTTTCTCTCATGAAAA+AGG 0.339350 2:+54056343 MsG0280009544.01.T01:CDS
CTTCGGATTGCGGTGGTTGT+TGG 0.342867 2:+54051534 MsG0280009544.01.T01:CDS
ATATACTAACATTATATCTT+AGG 0.344068 2:+54056994 MsG0280009544.01.T01:three_prime_UTR
TTGGTTCGTCGCTTCGGCTT+CGG 0.344544 2:+54051517 MsG0280009544.01.T01:CDS
TTCAAGTTGCCTTTCAATAA+GGG 0.355499 2:-54056297 None:intergenic
TTTCATTCCGAGTTCTTTGC+AGG 0.360550 2:-54051286 None:intergenic
AGCACTTCATGACTTTAAAT+CGG 0.371006 2:+54053973 MsG0280009544.01.T01:CDS
TGCGGTGGTTGTTGGTGGTA+TGG 0.371085 2:+54051542 MsG0280009544.01.T01:CDS
CCGATCTCGGCCTCTCGGAA+TGG 0.378522 2:+54051253 MsG0280009544.01.T01:CDS
CGATCTCGGCCTCTCGGAAT+GGG 0.387670 2:+54051254 MsG0280009544.01.T01:CDS
AAATGGAAGATATGGGTATT+AGG 0.391277 2:+54052800 MsG0280009544.01.T01:CDS
AGAATGATGTTGATCTCATT+CGG 0.393814 2:+54056264 MsG0280009544.01.T01:intron
TCAGTTGGCGGAGCAGTTTA+GGG 0.394651 2:+54051491 MsG0280009544.01.T01:CDS
TGCATCCCTCAGATTCTATC+TGG 0.396741 2:+54051333 MsG0280009544.01.T01:CDS
CATCTTGTTATTGCTACTCC+TGG 0.396926 2:+54051603 MsG0280009544.01.T01:CDS
TGATGTTGCTGGCCGTGGTC+TGG 0.400189 2:+54054021 MsG0280009544.01.T01:CDS
GAGAATAAATTGTTATATCT+AGG 0.420139 2:+54056755 MsG0280009544.01.T01:three_prime_UTR
GCTTCCGATTCTGCAGCGGC+TGG 0.420161 2:+54051410 MsG0280009544.01.T01:CDS
GGTTGAAAATCTTAAGCAAC+AGG 0.429158 2:+54052723 MsG0280009544.01.T01:CDS
ATTTCCAAAGGGAAATAAAC+AGG 0.433196 2:+54056672 MsG0280009544.01.T01:CDS
TTCAGTGCTTACCAGAAAAC+CGG 0.435141 2:+54052596 MsG0280009544.01.T01:CDS
CGAGCTGGCGTTTCAGTTGG+CGG 0.444131 2:+54051479 MsG0280009544.01.T01:CDS
GCGCGAGCTGGCGTTTCAGT+TGG 0.446631 2:+54051476 MsG0280009544.01.T01:CDS
GGTGACGCCCACGCGCGAGC+TGG 0.450131 2:+54051464 MsG0280009544.01.T01:CDS
TTTATATTCATTCAGATCAC+AGG 0.452733 2:+54053937 MsG0280009544.01.T01:intron
TCAGCCAGCCGCTGCAGAAT+CGG 0.452951 2:-54051414 None:intergenic
GGGCGCTTGGTTCGTCGCTT+CGG 0.454696 2:+54051511 MsG0280009544.01.T01:CDS
GCGGAGCAGTTTAGGGCGCT+TGG 0.455704 2:+54051498 MsG0280009544.01.T01:CDS
CGCTTTGAGCCTTGTTACCC+AGG 0.459600 2:+54054231 MsG0280009544.01.T01:CDS
GCACTTCATGACTTTAAATC+GGG 0.464876 2:+54053974 MsG0280009544.01.T01:CDS
ACCTTAGTCCTAGCGAAAAC+CGG 0.466218 2:-54051666 None:intergenic
GTGATCGGAATCGACGAAAC+CGG 0.466295 2:+54051363 MsG0280009544.01.T01:CDS
GTCGCTTCGGCTTCGGATTG+CGG 0.469236 2:+54051524 MsG0280009544.01.T01:CDS
TATTGGAAATGGGGAGTGAA+GGG 0.470644 2:-54051161 None:intergenic
GAATGATGTTGATCTCATTC+GGG 0.473257 2:+54056265 MsG0280009544.01.T01:intron
AATACATTGTAATAGTCAAC+TGG 0.474121 2:+54057022 MsG0280009544.01.T01:three_prime_UTR
GCAACTGATGTTGCTGGCCG+TGG 0.474774 2:+54054016 MsG0280009544.01.T01:CDS
TTACTAGCAACTGATGTTGC+TGG 0.478835 2:+54054010 MsG0280009544.01.T01:CDS
TACGAGATGGTTTGAACAGT+GGG 0.481317 2:-54051125 None:intergenic
CGGCTGGCTGAACATACGTT+TGG 0.482110 2:+54051426 MsG0280009544.01.T01:CDS
ATCTTGTTATTGCTACTCCT+GGG 0.483585 2:+54051604 MsG0280009544.01.T01:CDS
TTATTGGAAATGGGGAGTGA+AGG 0.491837 2:-54051162 None:intergenic
TTGTCTAAAATGGAAGATAT+GGG 0.493223 2:+54052793 MsG0280009544.01.T01:CDS
ACACGATGGATATAATCTCT+TGG 0.493233 2:-54054175 None:intergenic
CGAAACCGGAAGCGGTAAAA+CGG 0.497579 2:+54051377 MsG0280009544.01.T01:CDS
AAAATGAAGATGATGGATGA+TGG 0.500359 2:+54056551 MsG0280009544.01.T01:CDS
CTATCTGGCCGTCACGTGAT+CGG 0.500747 2:+54051348 MsG0280009544.01.T01:CDS
CGGATTGCGGTGGTTGTTGG+TGG 0.503141 2:+54051537 MsG0280009544.01.T01:CDS
TATGCCTTCGAAGCTTATGA+AGG 0.507189 2:+54052691 MsG0280009544.01.T01:CDS
TTATCAATTATGATGTTCCC+AGG 0.512684 2:+54054065 MsG0280009544.01.T01:CDS
ATTCTCCGATCTCGGCCTCT+CGG 0.513381 2:+54051248 MsG0280009544.01.T01:CDS
CTGAAACGCCAGCTCGCGCG+TGG 0.514525 2:-54051472 None:intergenic
ATGTAACATCAATAAAGAAA+AGG 0.515167 2:+54056722 MsG0280009544.01.T01:three_prime_UTR
AGCAAAACCTTAATCCTCCC+AGG 0.524605 2:-54051621 None:intergenic
GGATAATCCTGAAATTGCTC+CGG 0.527134 2:+54051647 MsG0280009544.01.T01:CDS
TTTATGGATGGTTTACGAGA+TGG 0.533854 2:-54051138 None:intergenic
TCATGACTTTAAATCGGGAA+AGG 0.537190 2:+54053979 MsG0280009544.01.T01:CDS
CTGAAAACGCTAGAAGAGAA+AGG 0.539201 2:+54056611 MsG0280009544.01.T01:CDS
ACCGCCACATTCTCCGATCT+CGG 0.539623 2:+54051240 MsG0280009544.01.T01:CDS
TCGTCTTTGTCTCCACATGC+AGG 0.541124 2:+54052830 MsG0280009544.01.T01:CDS
AAACCCTTCATAAGCTTCGA+AGG 0.541221 2:-54052695 None:intergenic
GGGAGTGAAGGGTTTATGGA+TGG 0.542231 2:-54051150 None:intergenic
AAAGGTGAGATATATTAAAG+TGG 0.543356 2:+54056888 MsG0280009544.01.T01:three_prime_UTR
GCTTAGACAGACTAAAGAGT+TGG 0.550278 2:+54051569 MsG0280009544.01.T01:CDS
GTCTTCTACCTCATCAGTCA+TGG 0.553502 2:+54051071 MsG0280009544.01.T01:exon
TTTGAGGTTTATTGGAAATG+GGG 0.554548 2:-54051170 None:intergenic
AGAAATAAAGAATTTCCAAA+GGG 0.554646 2:+54056661 MsG0280009544.01.T01:CDS
GGAATCGACGAAACCGGAAG+CGG 0.555942 2:+54051369 MsG0280009544.01.T01:CDS
GCAGATCGAGTCCTGGATGT+TGG 0.556533 2:+54052547 MsG0280009544.01.T01:CDS
CCATTCCGAGAGGCCGAGAT+CGG 0.556677 2:-54051253 None:intergenic
TTGCTCTTACCTGGGTAACA+AGG 0.566935 2:-54054240 None:intergenic
AAATGAAGATGATGGATGAT+GGG 0.569525 2:+54056552 MsG0280009544.01.T01:CDS
GTTGGTCGTACTGCAAGAGC+AGG 0.570495 2:+54054196 MsG0280009544.01.T01:CDS
CGTACTGCAAGAGCAGGTAG+AGG 0.571058 2:+54054202 MsG0280009544.01.T01:CDS
AGCTTATGAAGGGTTTAAGA+CGG 0.571635 2:+54052702 MsG0280009544.01.T01:CDS
GAGATCGGAGAATGTGGCGG+TGG 0.572617 2:-54051238 None:intergenic
GGATGAAGCAGATCGAGTCC+TGG 0.573766 2:+54052540 MsG0280009544.01.T01:CDS
GATTGAATACAAAGAAAATG+AGG 0.578047 2:+54056322 MsG0280009544.01.T01:CDS
AAGAAATAAAGAATTTCCAA+AGG 0.580214 2:+54056660 MsG0280009544.01.T01:CDS
TTGCGCTTCCGATTCTGCAG+CGG 0.585994 2:+54051406 MsG0280009544.01.T01:CDS
TTGATAACAAGGTCAACTGT+AGG 0.593803 2:-54054049 None:intergenic
AAATAGAGACCCTTATTGAA+AGG 0.594933 2:+54056288 MsG0280009544.01.T01:CDS
GACTGAGAGGAGCAAAGTCA+TGG 0.596253 2:+54056910 MsG0280009544.01.T01:three_prime_UTR
ATGCCTTCGAAGCTTATGAA+GGG 0.599933 2:+54052692 MsG0280009544.01.T01:CDS
GAGGCCGAGATCGGAGAATG+TGG 0.601311 2:-54051244 None:intergenic
GTACTGCAAGAGCAGGTAGA+GGG 0.607328 2:+54054203 MsG0280009544.01.T01:CDS
TTGTTATTGCTACTCCTGGG+AGG 0.607331 2:+54051607 MsG0280009544.01.T01:CDS
TGACGGCCAGATAGAATCTG+AGG 0.611906 2:-54051339 None:intergenic
CAGTGTTGTTGCACGCGCCG+TGG 0.612619 2:-54051312 None:intergenic
CATCCTGAAAACCAACATCC+AGG 0.615336 2:-54052558 None:intergenic
AGAGATTATATCCATCGTGT+TGG 0.616654 2:+54054178 MsG0280009544.01.T01:CDS
CGTCGATTCCGATCACGTGA+CGG 0.617887 2:-54051356 None:intergenic
CATTCAGATCACAGGCTCAG+AGG 0.620865 2:+54053945 MsG0280009544.01.T01:intron
ATATATTAAAGTGGACTGAG+AGG 0.625430 2:+54056897 MsG0280009544.01.T01:three_prime_UTR
GAACATCATAATTGATAACA+AGG 0.625464 2:-54054060 None:intergenic
GCTTCGGCTTCGGATTGCGG+TGG 0.640115 2:+54051527 MsG0280009544.01.T01:CDS
TTGAAGAGAAAGCGAAAGAG+CGG 0.641782 2:+54056576 MsG0280009544.01.T01:CDS
TACTGCAAGAGCAGGTAGAG+GGG 0.643242 2:+54054204 MsG0280009544.01.T01:CDS
ACTGCAAGAGCAGGTAGAGG+GGG 0.650965 2:+54054205 MsG0280009544.01.T01:CDS
GGAGTAGCAATAACAAGATG+CGG 0.653565 2:-54051600 None:intergenic
TTACGAGATGGTTTGAACAG+TGG 0.653664 2:-54051126 None:intergenic
AACTCGGAATGAAAACTCCA+CGG 0.661336 2:+54051295 MsG0280009544.01.T01:CDS
TCTAGAAAGATACCTGCATG+TGG 0.663823 2:-54052842 None:intergenic
GACGGCCAGATAGAATCTGA+GGG 0.667565 2:-54051338 None:intergenic
TGAAACGCCAGCTCGCGCGT+GGG 0.672864 2:-54051471 None:intergenic
GCCGAGATCGGAGAATGTGG+CGG 0.674748 2:-54051241 None:intergenic
AACCGGAAGCGGTAAAACGG+CGG 0.677356 2:+54051380 MsG0280009544.01.T01:CDS
AAAATCAAGGATATCAGACA+AGG 0.682828 2:+54056839 MsG0280009544.01.T01:three_prime_UTR
TTGCAGTACGACCAACACGA+TGG 0.688798 2:-54054189 None:intergenic
GCATGTGGAGACAAAGACGA+TGG 0.715178 2:-54052827 None:intergenic
TGGTTGCTCCATGACTGATG+AGG 0.728109 2:-54051079 None:intergenic
CTGTAGGTATATCCAGACCA+CGG 0.748122 2:-54054033 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTTAATACTGATATT+TGG + Chr2:54055189-54055208 MsG0280009544.01.T01:intron 10.0%
!!! TTTATTTTTATTTGATCATT+AGG + Chr2:54053077-54053096 MsG0280009544.01.T01:intron 10.0%
!! AAAATACATGTAACAAAAAA+TGG - Chr2:54052891-54052910 None:intergenic 15.0%
!! AAGAGAAAATTATAGTTAAT+AGG + Chr2:54055788-54055807 MsG0280009544.01.T01:intron 15.0%
!! ATATACTAACATTATATCTT+AGG + Chr2:54056994-54057013 MsG0280009544.01.T01:three_prime_UTR 15.0%
!! TTCCATTATCTATTTATATA+AGG - Chr2:54054513-54054532 None:intergenic 15.0%
!! TTGAATTTAAATTAGTAAAG+AGG - Chr2:54055745-54055764 None:intergenic 15.0%
!!! ATTTTTTGTTACATGTATTT+TGG + Chr2:54052890-54052909 MsG0280009544.01.T01:intron 15.0%
!!! TATTAACTATAATTTTCTCT+TGG - Chr2:54055789-54055808 None:intergenic 15.0%
!!! TGATGAAAATTTCAAATTTT+TGG + Chr2:54054580-54054599 MsG0280009544.01.T01:intron 15.0%
!!! TTTGTTATTAAAATAACTCA+GGG - Chr2:54052087-54052106 None:intergenic 15.0%
!!! TTTTGTTATTAAAATAACTC+AGG - Chr2:54052088-54052107 None:intergenic 15.0%
!! AAAGTTATGAAGTTGTTTAT+TGG + Chr2:54055922-54055941 MsG0280009544.01.T01:intron 20.0%
!! AAGAAATAAAGAATTTCCAA+AGG + Chr2:54056660-54056679 MsG0280009544.01.T01:CDS 20.0%
!! AAGTTATGAAGTTGTTTATT+GGG + Chr2:54055923-54055942 MsG0280009544.01.T01:intron 20.0%
!! AATAACAAAAGATAACAAGT+TGG + Chr2:54052098-54052117 MsG0280009544.01.T01:intron 20.0%
!! AATAATTAAATGTCTGTTTG+TGG + Chr2:54053310-54053329 MsG0280009544.01.T01:intron 20.0%
!! AATCAAATGCATTTATTTCA+CGG - Chr2:54054682-54054701 None:intergenic 20.0%
!! AGAAATAAAGAATTTCCAAA+GGG + Chr2:54056661-54056680 MsG0280009544.01.T01:CDS 20.0%
!! ATAACAAAAGATAACAAGTT+GGG + Chr2:54052099-54052118 MsG0280009544.01.T01:intron 20.0%
!! ATATAAAGAATGCATAAAGA+TGG - Chr2:54054627-54054646 None:intergenic 20.0%
!! ATATATAAATGAGACAAAGA+AGG - Chr2:54054956-54054975 None:intergenic 20.0%
!! ATGTAACATCAATAAAGAAA+AGG + Chr2:54056722-54056741 MsG0280009544.01.T01:three_prime_UTR 20.0%
!! ATTATAGTTAATAGGCATAT+AGG + Chr2:54055796-54055815 MsG0280009544.01.T01:intron 20.0%
!! CACCTTATATAAATAGATAA+TGG + Chr2:54054508-54054527 MsG0280009544.01.T01:intron 20.0%
!! CATTATCTATTTATATAAGG+TGG - Chr2:54054510-54054529 None:intergenic 20.0%
!! CTAACTTTGTAATTAAATTC+TGG + Chr2:54056062-54056081 MsG0280009544.01.T01:intron 20.0%
!! GAGAATAAATTGTTATATCT+AGG + Chr2:54056755-54056774 MsG0280009544.01.T01:three_prime_UTR 20.0%
!! TACAAAAAAACAAAAATAGC+AGG - Chr2:54053028-54053047 None:intergenic 20.0%
!! TATGTGTTAGTAATCAAAAT+TGG + Chr2:54052389-54052408 MsG0280009544.01.T01:intron 20.0%
!! TGATTTGATCATTATGAATT+TGG + Chr2:54051702-54051721 MsG0280009544.01.T01:intron 20.0%
!! TTTAATTACAAAGTTAGATC+TGG - Chr2:54056059-54056078 None:intergenic 20.0%
!! TTTCTAACATAATCATAACT+AGG - Chr2:54056135-54056154 None:intergenic 20.0%
!!! AAAATTTCAAATTTTTGGCT+TGG + Chr2:54054585-54054604 MsG0280009544.01.T01:intron 20.0%
!!! AAGATATTAGTGTTTTATTG+AGG + Chr2:54055861-54055880 MsG0280009544.01.T01:intron 20.0%
!!! AAGTTCTCTAATTTTTTGAA+GGG + Chr2:54055957-54055976 MsG0280009544.01.T01:intron 20.0%
!!! AATTTTTTTGATTTGAAGTC+CGG + Chr2:54053375-54053394 MsG0280009544.01.T01:intron 20.0%
!!! ACAATCAAATTTTATCATGT+TGG - Chr2:54053152-54053171 None:intergenic 20.0%
!!! AGATATTAGTGTTTTATTGA+GGG + Chr2:54055862-54055881 MsG0280009544.01.T01:intron 20.0%
!!! ATCTATCCTTGATTTTTTTT+GGG + Chr2:54056027-54056046 MsG0280009544.01.T01:intron 20.0%
!!! ATTCTATTTCTGTTGTAAAT+TGG - Chr2:54056164-54056183 None:intergenic 20.0%
!!! GATATTTTGTCAAAAAAGAA+AGG + Chr2:54055290-54055309 MsG0280009544.01.T01:intron 20.0%
!!! TATCTATCCTTGATTTTTTT+TGG + Chr2:54056026-54056045 MsG0280009544.01.T01:intron 20.0%
!!! TTAAGTTGTTTATCCAAATA+AGG - Chr2:54051834-54051853 None:intergenic 20.0%
! AAAGGTGAGATATATTAAAG+TGG + Chr2:54056888-54056907 MsG0280009544.01.T01:three_prime_UTR 25.0%
! AACGAATAAGAACACAAATT+TGG - Chr2:54054104-54054123 None:intergenic 25.0%
! AAGTAGAAAATGTTCGAAAA+GGG - Chr2:54055341-54055360 None:intergenic 25.0%
! AAGTTATCATGAAGAGTTTA+TGG + Chr2:54052190-54052209 MsG0280009544.01.T01:intron 25.0%
! AATACATTGTAATAGTCAAC+TGG + Chr2:54057022-54057041 MsG0280009544.01.T01:three_prime_UTR 25.0%
! AATACGTTACAGATGAATTT+CGG + Chr2:54055763-54055782 MsG0280009544.01.T01:intron 25.0%
! AATTGGATAATGTACTTGAA+TGG + Chr2:54052406-54052425 MsG0280009544.01.T01:intron 25.0%
! AATTTAGTGGTAATTAACTC+TGG - Chr2:54055401-54055420 None:intergenic 25.0%
! ACAAAAGAAGGAAATTTGTA+AGG - Chr2:54054379-54054398 None:intergenic 25.0%
! AGAAAGTAAAGAAATCGTTA+GGG - Chr2:54056495-54056514 None:intergenic 25.0%
! AGGATTTCTTTCCTAAAATA+TGG + Chr2:54053469-54053488 MsG0280009544.01.T01:intron 25.0%
! ATGGTTTACTCATTAATAGT+TGG + Chr2:54053523-54053542 MsG0280009544.01.T01:intron 25.0%
! CAAAAGAAGGAAATTTGTAA+GGG - Chr2:54054378-54054397 None:intergenic 25.0%
! CAAATATTTAGACAAAGAGA+AGG - Chr2:54053834-54053853 None:intergenic 25.0%
! CAGACATTTAATTATTAGAC+TGG - Chr2:54053306-54053325 None:intergenic 25.0%
! CATGTGTAAAAATAAGGATA+AGG - Chr2:54054980-54054999 None:intergenic 25.0%
! CTAAATTGTATGACAAAGAA+AGG - Chr2:54054862-54054881 None:intergenic 25.0%
! CTGAAAAATAAATTAAGAGG+CGG - Chr2:54051047-54051066 None:intergenic 25.0%
! CTTCAAAAAATTAGAGAACT+TGG - Chr2:54055958-54055977 None:intergenic 25.0%
! GATTGAATACAAAGAAAATG+AGG + Chr2:54056322-54056341 MsG0280009544.01.T01:CDS 25.0%
! GGACTTCAAATCAAAAAAAT+TGG - Chr2:54053376-54053395 None:intergenic 25.0%
! GGATTTCTTTCCTAAAATAT+GGG + Chr2:54053470-54053489 MsG0280009544.01.T01:intron 25.0%
! GTGCTGAAAAATAAATTAAG+AGG - Chr2:54051050-54051069 None:intergenic 25.0%
! GTTATGATTATGTTAGAAAC+TGG + Chr2:54056136-54056155 MsG0280009544.01.T01:intron 25.0%
! TAAACAGGAAAAAGTGAAAT+TGG + Chr2:54056687-54056706 MsG0280009544.01.T01:exon 25.0%
! TAGATAGTTAAACAATTTGC+TGG - Chr2:54054820-54054839 None:intergenic 25.0%
! TATAACTAACAGATTATCCT+AGG + Chr2:54053797-54053816 MsG0280009544.01.T01:intron 25.0%
! TCATCGTTTAAATTTAATGC+TGG + Chr2:54053889-54053908 MsG0280009544.01.T01:intron 25.0%
! TGTACATAGGCAATAAAATA+AGG - Chr2:54054899-54054918 None:intergenic 25.0%
! TTATAGAATGCACACAATTT+AGG + Chr2:54056194-54056213 MsG0280009544.01.T01:intron 25.0%
! TTATTGCCTATGTACAAAAT+GGG + Chr2:54054903-54054922 MsG0280009544.01.T01:intron 25.0%
! TTCATCAATTAACAACCTTA+AGG - Chr2:54054785-54054804 None:intergenic 25.0%
! TTTATATTCATTCAGATCAC+AGG + Chr2:54053937-54053956 MsG0280009544.01.T01:intron 25.0%
! TTTATTGCCTATGTACAAAA+TGG + Chr2:54054902-54054921 MsG0280009544.01.T01:intron 25.0%
! TTTGCTTTCAGAAAATGTAA+CGG - Chr2:54054347-54054366 None:intergenic 25.0%
!! AAGCAAAGTTTAGAATTTAG+TGG - Chr2:54055414-54055433 None:intergenic 25.0%
!! ATACATCCTTCACATTTTTA+GGG - Chr2:54052759-54052778 None:intergenic 25.0%
!! ATTTGAAGCATTTGATGAAA+CGG + Chr2:54054127-54054146 MsG0280009544.01.T01:intron 25.0%
!! GAACATCATAATTGATAACA+AGG - Chr2:54054063-54054082 None:intergenic 25.0%
!! TATACATCCTTCACATTTTT+AGG - Chr2:54052760-54052779 None:intergenic 25.0%
!! TGGCTTTTATTGAATAATTC+TGG - Chr2:54056096-54056115 None:intergenic 25.0%
!! TTATTCTAGTTGGATTCAAA+TGG + Chr2:54054739-54054758 MsG0280009544.01.T01:intron 25.0%
!! TTGTCTAAAATGGAAGATAT+GGG + Chr2:54052793-54052812 MsG0280009544.01.T01:CDS 25.0%
!! TTGTTGTTGCAGAAAAAAAT+AGG - Chr2:54052627-54052646 None:intergenic 25.0%
!! TTTGAAGTGTAGTTATGTAA+TGG + Chr2:54055243-54055262 MsG0280009544.01.T01:intron 25.0%
!! TTTTATTGAGGGAAAGTTTT+AGG + Chr2:54055873-54055892 MsG0280009544.01.T01:intron 25.0%
!!! AAAATAGCTTTTAGCTTATG+TGG - Chr2:54052167-54052186 None:intergenic 25.0%
!!! AAATAGCTTTTAGCTTATGT+GGG - Chr2:54052166-54052185 None:intergenic 25.0%
!!! AATGTTCTAAAAAGTGAAAG+TGG - Chr2:54052989-54053008 None:intergenic 25.0%
!!! AGTTCACAACTCTTTTTTTT+TGG + Chr2:54052936-54052955 MsG0280009544.01.T01:intron 25.0%
!!! ATTATTTTTTTGGTGGTGAA+AGG + Chr2:54056870-54056889 MsG0280009544.01.T01:three_prime_UTR 25.0%
!!! CAAGTTCTCTAATTTTTTGA+AGG + Chr2:54055956-54055975 MsG0280009544.01.T01:intron 25.0%
!!! CTGTTTTTACTGTTTATTCT+TGG + Chr2:54053691-54053710 MsG0280009544.01.T01:intron 25.0%
!!! GAGATGTATTATTTTTTTGG+TGG + Chr2:54056863-54056882 MsG0280009544.01.T01:three_prime_UTR 25.0%
!!! GGTGAGATGTATTATTTTTT+TGG + Chr2:54056860-54056879 MsG0280009544.01.T01:three_prime_UTR 25.0%
!!! GTTCACAACTCTTTTTTTTT+GGG + Chr2:54052937-54052956 MsG0280009544.01.T01:intron 25.0%
!!! GTTCAGACATTTACTTTTTT+GGG + Chr2:54055013-54055032 MsG0280009544.01.T01:intron 25.0%
!!! TGAAAAAGGTATGTTTTTAC+AGG + Chr2:54056357-54056376 MsG0280009544.01.T01:intron 25.0%
!!! TGTTCAGACATTTACTTTTT+TGG + Chr2:54055012-54055031 MsG0280009544.01.T01:intron 25.0%
!!! TTACATTTTCTGAAAGCAAA+TGG + Chr2:54054347-54054366 MsG0280009544.01.T01:intron 25.0%
!!! TTCACAACTCTTTTTTTTTG+GGG + Chr2:54052938-54052957 MsG0280009544.01.T01:intron 25.0%
!!! TTTTGAGGTTTATTGGAAAT+GGG - Chr2:54051174-54051193 None:intergenic 25.0%
AAAAAACAAAAATAGCAGGC+AGG - Chr2:54053024-54053043 None:intergenic 30.0%
AAAAACAAAAATAGCAGGCA+GGG - Chr2:54053023-54053042 None:intergenic 30.0%
AAAATCAAGGATATCAGACA+AGG + Chr2:54056839-54056858 MsG0280009544.01.T01:three_prime_UTR 30.0%
AAACTGTGTTTATTGTCCTT+CGG - Chr2:54053254-54053273 None:intergenic 30.0%
AAATAGAGACCCTTATTGAA+AGG + Chr2:54056288-54056307 MsG0280009544.01.T01:CDS 30.0%
AAATGGAAGATATGGGTATT+AGG + Chr2:54052800-54052819 MsG0280009544.01.T01:CDS 30.0%
AGAATGATGTTGATCTCATT+CGG + Chr2:54056264-54056283 MsG0280009544.01.T01:intron 30.0%
AGCAATGTTCAACATACAAA+TGG - Chr2:54054480-54054499 None:intergenic 30.0%
AGCACTTCATGACTTTAAAT+CGG + Chr2:54053973-54053992 MsG0280009544.01.T01:CDS 30.0%
AGGATCTCAATTATTCTAGT+TGG + Chr2:54054729-54054748 MsG0280009544.01.T01:intron 30.0%
AGGTTGTTAATTGATGAAAG+CGG + Chr2:54054787-54054806 MsG0280009544.01.T01:intron 30.0%
AGTACAAATCTATCCATGAT+TGG + Chr2:54052342-54052361 MsG0280009544.01.T01:intron 30.0%
AGTAGAAAATGTTCGAAAAG+GGG - Chr2:54055340-54055359 None:intergenic 30.0%
ATTCATCCCTAAAAATGTGA+AGG + Chr2:54052750-54052769 MsG0280009544.01.T01:CDS 30.0%
ATTTCACGGTAATGTTTATG+AGG - Chr2:54054668-54054687 None:intergenic 30.0%
ATTTCCAAAGGGAAATAAAC+AGG + Chr2:54056672-54056691 MsG0280009544.01.T01:CDS 30.0%
CAAGTAGAAAATGTTCGAAA+AGG - Chr2:54055342-54055361 None:intergenic 30.0%
CAAGTGCATGTGTAAAAATA+AGG - Chr2:54054986-54055005 None:intergenic 30.0%
CAGAAAGTAAAGAAATCGTT+AGG - Chr2:54056496-54056515 None:intergenic 30.0%
CTGATCATAAAACTTTCACA+TGG + Chr2:54054294-54054313 MsG0280009544.01.T01:intron 30.0%
GAATTGGTAGAGTTAATCTT+TGG + Chr2:54053666-54053685 MsG0280009544.01.T01:intron 30.0%
GAGATTCTATATTCCAATCA+TGG - Chr2:54052358-54052377 None:intergenic 30.0%
GTATGATTTATGACACATTG+TGG - Chr2:54055715-54055734 None:intergenic 30.0%
TAGGAAACTGAATTGAATAC+TGG - Chr2:54056116-54056135 None:intergenic 30.0%
TATGAAGTTGTTTATTGGGA+GGG + Chr2:54055927-54055946 MsG0280009544.01.T01:intron 30.0%
TATGCAATTCAATGCTTAGA+CGG - Chr2:54056393-54056412 None:intergenic 30.0%
TATTGCCTATGTACAAAATG+GGG + Chr2:54054904-54054923 MsG0280009544.01.T01:intron 30.0%
TCTTCATTCATTGAATGCAT+TGG + Chr2:54054410-54054429 MsG0280009544.01.T01:intron 30.0%
TGAATTCAATATTGAGACCA+TGG + Chr2:54055494-54055513 MsG0280009544.01.T01:intron 30.0%
TGGTTTATTGGGAAGATATT+AGG + Chr2:54055899-54055918 MsG0280009544.01.T01:intron 30.0%
TGTTGCAAAAATGAAGATGA+TGG + Chr2:54056544-54056563 MsG0280009544.01.T01:CDS 30.0%
TTAATTATTAGACTGGACTC+TGG - Chr2:54053299-54053318 None:intergenic 30.0%
TTATCAATTATGATGTTCCC+AGG + Chr2:54054065-54054084 MsG0280009544.01.T01:CDS 30.0%
TTATGAAGTTGTTTATTGGG+AGG + Chr2:54055926-54055945 MsG0280009544.01.T01:intron 30.0%
TTGCAGAATTGAACACAATT+TGG - Chr2:54055675-54055694 None:intergenic 30.0%
TTGCTTTCAGAAAATGTAAC+GGG - Chr2:54054346-54054365 None:intergenic 30.0%
TTGGAAAAGAAAAGTAACCT+GGG - Chr2:54054085-54054104 None:intergenic 30.0%
TTGTTTAACTATCTACCCTT+TGG + Chr2:54054825-54054844 MsG0280009544.01.T01:intron 30.0%
TTTCACGGTAATGTTTATGA+GGG - Chr2:54054667-54054686 None:intergenic 30.0%
TTTCCTCCCAAAAAAAATCA+AGG - Chr2:54056036-54056055 None:intergenic 30.0%
TTTGGAAAAGAAAAGTAACC+TGG - Chr2:54054086-54054105 None:intergenic 30.0%
! ACCATGACATCTAATTTTCA+TGG - Chr2:54054543-54054562 None:intergenic 30.0%
! CAGAAAAAAATAGGTTTTGC+CGG - Chr2:54052618-54052637 None:intergenic 30.0%
! CTTGTCTAAAATGGAAGATA+TGG + Chr2:54052792-54052811 MsG0280009544.01.T01:CDS 30.0%
! GTTTTCGTAAGTGTTTATGA+TGG + Chr2:54052029-54052048 MsG0280009544.01.T01:intron 30.0%
! TAAACACAGTTTCAAGCTTT+TGG + Chr2:54053262-54053281 MsG0280009544.01.T01:intron 30.0%
! TGTCTGATATCCTTGATTTT+TGG - Chr2:54056839-54056858 None:intergenic 30.0%
! TTCTATTGATGTGCGATTTT+GGG + Chr2:54056962-54056981 MsG0280009544.01.T01:three_prime_UTR 30.0%
! TTTGAGGTTTATTGGAAATG+GGG - Chr2:54051173-54051192 None:intergenic 30.0%
! TTTTCCTGTTTATTTCCCTT+TGG - Chr2:54056679-54056698 None:intergenic 30.0%
!! AAAATGAAGATGATGGATGA+TGG + Chr2:54056551-54056570 MsG0280009544.01.T01:CDS 30.0%
!! AAATGAAGATGATGGATGAT+GGG + Chr2:54056552-54056571 MsG0280009544.01.T01:CDS 30.0%
!! AATGGTGGAATCTTTTATGA+CGG + Chr2:54053773-54053792 MsG0280009544.01.T01:intron 30.0%
!! AGTTATGTAATGGTGTTGTA+GGG + Chr2:54055253-54055272 MsG0280009544.01.T01:intron 30.0%
!! ATACCTTTTTCATGAGAGAA+AGG - Chr2:54056349-54056368 None:intergenic 30.0%
!! ATATATTAAAGTGGACTGAG+AGG + Chr2:54056897-54056916 MsG0280009544.01.T01:three_prime_UTR 30.0%
!! ATTGAATAATTCTGGTTCAG+TGG - Chr2:54056088-54056107 None:intergenic 30.0%
!! TAGTTATGTAATGGTGTTGT+AGG + Chr2:54055252-54055271 MsG0280009544.01.T01:intron 30.0%
!! TGTAAACCTCTTTAAAGCTA+AGG - Chr2:54055544-54055563 None:intergenic 30.0%
!! TTCAAGTTGCCTTTCAATAA+GGG - Chr2:54056300-54056319 None:intergenic 30.0%
!! TTTCAAGTTGCCTTTCAATA+AGG - Chr2:54056301-54056320 None:intergenic 30.0%
!!! AGTTTTAGGAAGTGGTTTAT+TGG + Chr2:54055887-54055906 MsG0280009544.01.T01:intron 30.0%
!!! GTTTTAGGAAGTGGTTTATT+GGG + Chr2:54055888-54055907 MsG0280009544.01.T01:intron 30.0%
!!! GTTTTGAGGTTTATTGGAAA+TGG - Chr2:54051175-54051194 None:intergenic 30.0%
!!! TATCCTTGATTTTTTTTGGG+AGG + Chr2:54056030-54056049 MsG0280009544.01.T01:intron 30.0%
AAAAAGTGAAAGTGGCAACA+TGG - Chr2:54052981-54053000 None:intergenic 35.0%
AAAGAATGCATAAAGATGGC+AGG - Chr2:54054623-54054642 None:intergenic 35.0%
AAGAATGCATAAAGATGGCA+GGG - Chr2:54054622-54054641 None:intergenic 35.0%
AATGAGCTGAAAAGAGCTTA+TGG + Chr2:54052214-54052233 MsG0280009544.01.T01:intron 35.0%
ACACGATGGATATAATCTCT+TGG - Chr2:54054178-54054197 None:intergenic 35.0%
ACAGATAGAAAAAGCAACAG+AGG - Chr2:54053629-54053648 None:intergenic 35.0%
ACTCGACTTCAAACAAAAGA+AGG - Chr2:54054391-54054410 None:intergenic 35.0%
AGAGATTATATCCATCGTGT+TGG + Chr2:54054178-54054197 MsG0280009544.01.T01:CDS 35.0%
AGCATTAACACTTACATGTC+AGG + Chr2:54051808-54051827 MsG0280009544.01.T01:intron 35.0%
AGCATTCTTTATGATTCCGA+AGG + Chr2:54053235-54053254 MsG0280009544.01.T01:intron 35.0%
AGCTTATGAAGGGTTTAAGA+CGG + Chr2:54052702-54052721 MsG0280009544.01.T01:CDS 35.0%
CAACCTTAAGGATATGAGTT+CGG - Chr2:54054773-54054792 None:intergenic 35.0%
CCAACACATACATCATGTTT+AGG + Chr2:54054709-54054728 MsG0280009544.01.T01:intron 35.0%
CCTAAACATGATGTATGTGT+TGG - Chr2:54054712-54054731 None:intergenic 35.0%
CTCAAATAAGCTAATCCAAG+CGG + Chr2:54052304-54052323 MsG0280009544.01.T01:intron 35.0%
CTTAAACTGTACATGTGTCT+TGG + Chr2:54055572-54055591 MsG0280009544.01.T01:intron 35.0%
CTTGTAATTCTCATGTTGAC+TGG + Chr2:54054440-54054459 MsG0280009544.01.T01:intron 35.0%
GAATGATGTTGATCTCATTC+GGG + Chr2:54056265-54056284 MsG0280009544.01.T01:intron 35.0%
GATCAACATCATTCTGCAAA+TGG - Chr2:54056259-54056278 None:intergenic 35.0%
GATTGTTGCTCCAAAAATCA+AGG + Chr2:54056826-54056845 MsG0280009544.01.T01:three_prime_UTR 35.0%
GCACTTCATGACTTTAAATC+GGG + Chr2:54053974-54053993 MsG0280009544.01.T01:CDS 35.0%
GCATATTATAGCAGAGGAAT+TGG + Chr2:54053650-54053669 MsG0280009544.01.T01:intron 35.0%
GCCATGAAAATTAGATGTCA+TGG + Chr2:54054539-54054558 MsG0280009544.01.T01:intron 35.0%
GGAAATCAATGCACAACAAA+AGG - Chr2:54056226-54056245 None:intergenic 35.0%
GGTTGAAAATCTTAAGCAAC+AGG + Chr2:54052723-54052742 MsG0280009544.01.T01:CDS 35.0%
GGTTGTTAATTGATGAAAGC+GGG + Chr2:54054788-54054807 MsG0280009544.01.T01:intron 35.0%
GTAAAAACCTGCAAAGAACT+CGG + Chr2:54051279-54051298 MsG0280009544.01.T01:CDS 35.0%
GTTGCACATCTTGTCTAAAA+TGG + Chr2:54052783-54052802 MsG0280009544.01.T01:CDS 35.0%
TACTACCAAGATTACAATGC+CGG - Chr2:54053397-54053416 None:intergenic 35.0%
TCAAATAATCCAGTCGAAAC+AGG + Chr2:54052061-54052080 MsG0280009544.01.T01:intron 35.0%
TCAGATACATGTCTGGATTT+GGG + Chr2:54055823-54055842 MsG0280009544.01.T01:intron 35.0%
TCATGACTTTAAATCGGGAA+AGG + Chr2:54053979-54053998 MsG0280009544.01.T01:CDS 35.0%
TCCAAAAAATTCGAGAGTCT+TGG - Chr2:54055988-54056007 None:intergenic 35.0%
TCTGTAGCATATTATAGCAG+AGG + Chr2:54053644-54053663 MsG0280009544.01.T01:intron 35.0%
TGCTTTCAGAAAATGTAACG+GGG - Chr2:54054345-54054364 None:intergenic 35.0%
TTCAGATACATGTCTGGATT+TGG + Chr2:54055822-54055841 MsG0280009544.01.T01:intron 35.0%
TTGGTATTACAATGACACTG+AGG - Chr2:54053133-54053152 None:intergenic 35.0%
TTTACTTTCTGATGCATTGC+AGG + Chr2:54056505-54056524 MsG0280009544.01.T01:intron 35.0%
TTTATGGATGGTTTACGAGA+TGG - Chr2:54051141-54051160 None:intergenic 35.0%
TTTCCGAACTCATATCCTTA+AGG + Chr2:54054767-54054786 MsG0280009544.01.T01:intron 35.0%
! AAAAACCTAGAGGGTATGTT+TGG + Chr2:54055439-54055458 MsG0280009544.01.T01:intron 35.0%
! AACAAAGTTTGCTCTTACCT+GGG - Chr2:54054251-54054270 None:intergenic 35.0%
! CTTCTATTGATGTGCGATTT+TGG + Chr2:54056961-54056980 MsG0280009544.01.T01:three_prime_UTR 35.0%
! GAGGATTAAGGTTTTGCTTA+AGG + Chr2:54051626-54051645 MsG0280009544.01.T01:CDS 35.0%
! GCATTTGATGAAACGGATTT+CGG + Chr2:54054134-54054153 MsG0280009544.01.T01:intron 35.0%
! GCTTGTTGAAAAAACCTAGA+GGG + Chr2:54055430-54055449 MsG0280009544.01.T01:intron 35.0%
! GTTTGAACAGTGGGAAATTT+TGG - Chr2:54051119-54051138 None:intergenic 35.0%
! TGCTTGTTGAAAAAACCTAG+AGG + Chr2:54055429-54055448 MsG0280009544.01.T01:intron 35.0%
! TTGATAACAAGGTCAACTGT+AGG - Chr2:54054052-54054071 None:intergenic 35.0%
! TTTTGGTCTACAAGATGTTG+TGG - Chr2:54051102-54051121 None:intergenic 35.0%
!! ACCTCTTTAAAGCTAAGGAA+AGG - Chr2:54055539-54055558 None:intergenic 35.0%
!! ATCTTGTTATTGCTACTCCT+GGG + Chr2:54051604-54051623 MsG0280009544.01.T01:CDS 35.0%
!! GTTTGTTGTGGACAGTTTAT+TGG + Chr2:54053194-54053213 MsG0280009544.01.T01:intron 35.0%
!! TCCTTTCCTTAGCTTTAAAG+AGG + Chr2:54055535-54055554 MsG0280009544.01.T01:intron 35.0%
!!! AAGACTCTCGAATTTTTTGG+AGG + Chr2:54055987-54056006 MsG0280009544.01.T01:intron 35.0%
!!! AAGCAGTACAGATTTTGACT+TGG + Chr2:54057049-54057068 MsG0280009544.01.T01:three_prime_UTR 35.0%
!!! ACCAAGACTCTCGAATTTTT+TGG + Chr2:54055984-54056003 MsG0280009544.01.T01:intron 35.0%
!!! GCTGTTTTCTAAAGCTATCT+TGG + Chr2:54051957-54051976 MsG0280009544.01.T01:intron 35.0%
!!! TGTTGATTTTGAGACGTGTT+TGG + Chr2:54051760-54051779 MsG0280009544.01.T01:intron 35.0%
AAACCCTTCATAAGCTTCGA+AGG - Chr2:54052698-54052717 None:intergenic 40.0%
AAACTGTACATGTGTCTTGG+TGG + Chr2:54055575-54055594 MsG0280009544.01.T01:intron 40.0%
AAACTGTCCACAACAAACGA+GGG - Chr2:54053192-54053211 None:intergenic 40.0%
AACTCGGAATGAAAACTCCA+CGG + Chr2:54051295-54051314 MsG0280009544.01.T01:CDS 40.0%
AGAAGATAGCACACGTAACT+AGG - Chr2:54055093-54055112 None:intergenic 40.0%
AGAAGGACATGTAATTGCCT+AGG - Chr2:54053817-54053836 None:intergenic 40.0%
AGGTTGTTCAGATACATGTC+TGG + Chr2:54055816-54055835 MsG0280009544.01.T01:intron 40.0%
ATAGCACACGTAACTAGGAA+GGG - Chr2:54055088-54055107 None:intergenic 40.0%
ATGCCTTCGAAGCTTATGAA+GGG + Chr2:54052692-54052711 MsG0280009544.01.T01:CDS 40.0%
ATTTGACATCACCAAAGCCA+TGG - Chr2:54055514-54055533 None:intergenic 40.0%
CAACATCATTCTGCAAATGG+TGG - Chr2:54056256-54056275 None:intergenic 40.0%
CAATATTGAGACCATGGCTT+TGG + Chr2:54055500-54055519 MsG0280009544.01.T01:intron 40.0%
CACATTATCTGCTGAAAGAC+GGG - Chr2:54053499-54053518 None:intergenic 40.0%
CCACATTATCTGCTGAAAGA+CGG - Chr2:54053500-54053519 None:intergenic 40.0%
CGATGACAATCTCTGCAATT+TGG - Chr2:54053875-54053894 None:intergenic 40.0%
CTGAAAACGCTAGAAGAGAA+AGG + Chr2:54056611-54056630 MsG0280009544.01.T01:CDS 40.0%
CTTTATATCAAGCCCAGCTT+TGG + Chr2:54054639-54054658 MsG0280009544.01.T01:intron 40.0%
GATTTCGGCTATTCACATGT+AGG + Chr2:54054149-54054168 MsG0280009544.01.T01:intron 40.0%
GCAAGTTACAGCATACTCAA+GGG - Chr2:54055604-54055623 None:intergenic 40.0%
GCTTAGACAGACTAAAGAGT+TGG + Chr2:54051569-54051588 MsG0280009544.01.T01:CDS 40.0%
GCTTTCAGAAAATGTAACGG+GGG - Chr2:54054344-54054363 None:intergenic 40.0%
GGAGTAGCAATAACAAGATG+CGG - Chr2:54051603-54051622 None:intergenic 40.0%
GGATAATCCTGAAATTGCTC+CGG + Chr2:54051647-54051666 MsG0280009544.01.T01:CDS 40.0%
GGTCCTTTCTCTCATGAAAA+AGG + Chr2:54056343-54056362 MsG0280009544.01.T01:CDS 40.0%
TAAACTGTCCACAACAAACG+AGG - Chr2:54053193-54053212 None:intergenic 40.0%
TAACTATCTACCCTTTGGCT+TGG + Chr2:54054830-54054849 MsG0280009544.01.T01:intron 40.0%
TACAATGACACTGAGGAAGA+GGG - Chr2:54053126-54053145 None:intergenic 40.0%
TACGAGATGGTTTGAACAGT+GGG - Chr2:54051128-54051147 None:intergenic 40.0%
TATGCCTTCGAAGCTTATGA+AGG + Chr2:54052691-54052710 MsG0280009544.01.T01:CDS 40.0%
TATTGGAAATGGGGAGTGAA+GGG - Chr2:54051164-54051183 None:intergenic 40.0%
TCTAGAAAGATACCTGCATG+TGG - Chr2:54052845-54052864 None:intergenic 40.0%
TGCAAGTTACAGCATACTCA+AGG - Chr2:54055605-54055624 None:intergenic 40.0%
TGGATAGATTTGTACTCACC+CGG - Chr2:54052338-54052357 None:intergenic 40.0%
TTACAATGACACTGAGGAAG+AGG - Chr2:54053127-54053146 None:intergenic 40.0%
TTACGAGATGGTTTGAACAG+TGG - Chr2:54051129-54051148 None:intergenic 40.0%
TTACTAGCAACTGATGTTGC+TGG + Chr2:54054010-54054029 MsG0280009544.01.T01:CDS 40.0%
TTATTGGAAATGGGGAGTGA+AGG - Chr2:54051165-54051184 None:intergenic 40.0%
TTCAGTGCTTACCAGAAAAC+CGG + Chr2:54052596-54052615 MsG0280009544.01.T01:CDS 40.0%
TTGAAGAGAAAGCGAAAGAG+CGG + Chr2:54056576-54056595 MsG0280009544.01.T01:CDS 40.0%
TTTCATTCCGAGTTCTTTGC+AGG - Chr2:54051289-54051308 None:intergenic 40.0%
! ACATGCCCCATTTTGTACAT+AGG - Chr2:54054912-54054931 None:intergenic 40.0%
! AGACGGGTATCCCATATTTT+AGG - Chr2:54053483-54053502 None:intergenic 40.0%
! CAACAAAGTTTGCTCTTACC+TGG - Chr2:54054252-54054271 None:intergenic 40.0%
! CTTTCAGAAAATGTAACGGG+GGG - Chr2:54054343-54054362 None:intergenic 40.0%
! GCTTTTGCAGTTTCTTGTCT+TGG + Chr2:54052519-54052538 MsG0280009544.01.T01:intron 40.0%
! GGCATTGTAATCTTGGTAGT+AGG + Chr2:54053396-54053415 MsG0280009544.01.T01:intron 40.0%
! TAATCTTGGTAGTAGGCACT+TGG + Chr2:54053403-54053422 MsG0280009544.01.T01:intron 40.0%
! TCAGCAGATAATGTGGACTA+TGG + Chr2:54053504-54053523 MsG0280009544.01.T01:intron 40.0%
! TGCTTTGGATAACTTCCAGA+AGG - Chr2:54055053-54055072 None:intergenic 40.0%
!! CATCTTGTTATTGCTACTCC+TGG + Chr2:54051603-54051622 MsG0280009544.01.T01:CDS 40.0%
!! CTTACATGTCAGGCCTTATT+TGG + Chr2:54051818-54051837 MsG0280009544.01.T01:intron 40.0%
!! GTTTTCGGGGTTGGAATTAA+GGG - Chr2:54051217-54051236 None:intergenic 40.0%
!! TGTTTTCGGGGTTGGAATTA+AGG - Chr2:54051218-54051237 None:intergenic 40.0%
!!! AATAGGTTTTGCCGGTTTTC+TGG - Chr2:54052610-54052629 None:intergenic 40.0%
!!! GACGTCGTTTTGAGGTTTAT+TGG - Chr2:54051181-54051200 None:intergenic 40.0%
!!! TGAGGGAAAGTTTTAGGAAG+TGG + Chr2:54055879-54055898 MsG0280009544.01.T01:intron 40.0%
AACTGTCCACAACAAACGAG+GGG - Chr2:54053191-54053210 None:intergenic 45.0%
AATGGGGAGTGAAGGGTTTA+TGG - Chr2:54051157-54051176 None:intergenic 45.0%
ACCTTAGTCCTAGCGAAAAC+CGG - Chr2:54051669-54051688 None:intergenic 45.0%
AGCAAAACCTTAATCCTCCC+AGG - Chr2:54051624-54051643 None:intergenic 45.0%
AGTAGACATAGGGTGCAAGT+AGG + Chr2:54053449-54053468 MsG0280009544.01.T01:intron 45.0%
CATCCTGAAAACCAACATCC+AGG - Chr2:54052561-54052580 None:intergenic 45.0%
CCGTCTTTCAGCAGATAATG+TGG + Chr2:54053497-54053516 MsG0280009544.01.T01:intron 45.0%
CCTATGTCTACTAGCAAGCA+GGG - Chr2:54053441-54053460 None:intergenic 45.0%
CTGTAGGTATATCCAGACCA+CGG - Chr2:54054036-54054055 None:intergenic 45.0%
GAAGTCCGGCATTGTAATCT+TGG + Chr2:54053389-54053408 MsG0280009544.01.T01:intron 45.0%
GAGACAAAGAAGGCAATCAC+TGG - Chr2:54054946-54054965 None:intergenic 45.0%
GAGTCATGCTTGCTTACACT+TGG + Chr2:54053733-54053752 MsG0280009544.01.T01:intron 45.0%
GATAGCACACGTAACTAGGA+AGG - Chr2:54055089-54055108 None:intergenic 45.0%
GGATAGATTTGTACTCACCC+GGG - Chr2:54052337-54052356 None:intergenic 45.0%
GTCTTCTACCTCATCAGTCA+TGG + Chr2:54051071-54051090 MsG0280009544.01.T01:exon 45.0%
GTGTTGAAGTGGAGGTCTAA+TGG + Chr2:54053755-54053774 MsG0280009544.01.T01:intron 45.0%
TCTGCAAATGGTGGCAAAAG+AGG - Chr2:54056247-54056266 None:intergenic 45.0%
TGCATCCCTCAGATTCTATC+TGG + Chr2:54051333-54051352 MsG0280009544.01.T01:CDS 45.0%
TTGAAGTGGAGGTCTAATGG+TGG + Chr2:54053758-54053777 MsG0280009544.01.T01:intron 45.0%
TTGCTCTTACCTGGGTAACA+AGG - Chr2:54054243-54054262 None:intergenic 45.0%
TTTATGAGGGAGCCAAAGCT+GGG - Chr2:54054654-54054673 None:intergenic 45.0%
! AAATTGCTCCGGTTTTCGCT+AGG + Chr2:54051658-54051677 MsG0280009544.01.T01:CDS 45.0%
! ATGTTGACTGGTTGCTACGT+CGG + Chr2:54054452-54054471 MsG0280009544.01.T01:intron 45.0%
! CCTGCTTGCTAGTAGACATA+GGG + Chr2:54053439-54053458 MsG0280009544.01.T01:intron 45.0%
! TATTAGACTGGACTCTGGAG+AGG - Chr2:54053294-54053313 None:intergenic 45.0%
! TTGTTATTGCTACTCCTGGG+AGG + Chr2:54051607-54051626 MsG0280009544.01.T01:CDS 45.0%
! TTTTTACAGCCCATTCCGAG+AGG - Chr2:54051266-54051285 None:intergenic 45.0%
!! CATTTTCCCCTCGTTTGTTG+TGG + Chr2:54053182-54053201 MsG0280009544.01.T01:intron 45.0%
!! GCTTACACTTGGTGTTGAAG+TGG + Chr2:54053744-54053763 MsG0280009544.01.T01:intron 45.0%
!! TACACTTGGTGTTGAAGTGG+AGG + Chr2:54053747-54053766 MsG0280009544.01.T01:intron 45.0%
!! TGTGTAACGACGTCGTTTTG+AGG - Chr2:54051189-54051208 None:intergenic 45.0%
!!! AGTCCTGGATGTTGGTTTTC+AGG + Chr2:54052555-54052574 MsG0280009544.01.T01:CDS 45.0%
!!! GTTTGGTGTTTTTGCGCTTG+TGG + Chr2:54051443-54051462 MsG0280009544.01.T01:CDS 45.0%
AAAGGACCATGCCAAGCCAA+AGG - Chr2:54054844-54054863 None:intergenic 50.0%
AAGGACCATGCCAAGCCAAA+GGG - Chr2:54054843-54054862 None:intergenic 50.0%
AGAATCCACCAGCAGCATAG+GGG - Chr2:54055467-54055486 None:intergenic 50.0%
CATTCAGATCACAGGCTCAG+AGG + Chr2:54053945-54053964 MsG0280009544.01.T01:intron 50.0%
CCCTATGTCTACTAGCAAGC+AGG - Chr2:54053442-54053461 None:intergenic 50.0%
CGAAACCGGAAGCGGTAAAA+CGG + Chr2:54051377-54051396 MsG0280009544.01.T01:CDS 50.0%
CGTAACTAGGAAGGGATGAG+TGG - Chr2:54055080-54055099 None:intergenic 50.0%
GACGGCCAGATAGAATCTGA+GGG - Chr2:54051341-54051360 None:intergenic 50.0%
GACTGAGAGGAGCAAAGTCA+TGG + Chr2:54056910-54056929 MsG0280009544.01.T01:three_prime_UTR 50.0%
GAGAATCCACCAGCAGCATA+GGG - Chr2:54055468-54055487 None:intergenic 50.0%
GATTTGTACTCACCCGGGTA+AGG - Chr2:54052332-54052351 None:intergenic 50.0%
GCATGTGGAGACAAAGACGA+TGG - Chr2:54052830-54052849 None:intergenic 50.0%
GCGAAAACCGGAGCAATTTC+AGG - Chr2:54051657-54051676 None:intergenic 50.0%
GGGAGTGAAGGGTTTATGGA+TGG - Chr2:54051153-54051172 None:intergenic 50.0%
GGGATCCAAACATACCCTCT+AGG - Chr2:54055447-54055466 None:intergenic 50.0%
GGGATGAGTGGTGAATGCTT+TGG - Chr2:54055068-54055087 None:intergenic 50.0%
GTACTGCAAGAGCAGGTAGA+GGG + Chr2:54054203-54054222 MsG0280009544.01.T01:CDS 50.0%
GTGATCGGAATCGACGAAAC+CGG + Chr2:54051363-54051382 MsG0280009544.01.T01:CDS 50.0%
GTTTATGAGGGAGCCAAAGC+TGG - Chr2:54054655-54054674 None:intergenic 50.0%
TACTGCAAGAGCAGGTAGAG+GGG + Chr2:54054204-54054223 MsG0280009544.01.T01:CDS 50.0%
TCAGTTGGCGGAGCAGTTTA+GGG + Chr2:54051491-54051510 MsG0280009544.01.T01:CDS 50.0%
TCGTCTTTGTCTCCACATGC+AGG + Chr2:54052830-54052849 MsG0280009544.01.T01:CDS 50.0%
TGACGGCCAGATAGAATCTG+AGG - Chr2:54051342-54051361 None:intergenic 50.0%
TGAGAATCCACCAGCAGCAT+AGG - Chr2:54055469-54055488 None:intergenic 50.0%
TGCTACTCCTGGGAGGATTA+AGG + Chr2:54051614-54051633 MsG0280009544.01.T01:CDS 50.0%
TGGTTGCTCCATGACTGATG+AGG - Chr2:54051082-54051101 None:intergenic 50.0%
TTCAGTTGGCGGAGCAGTTT+AGG + Chr2:54051490-54051509 MsG0280009544.01.T01:CDS 50.0%
TTGCAGTACGACCAACACGA+TGG - Chr2:54054192-54054211 None:intergenic 50.0%
! AATGTGGCGGTGGTGTTTTC+GGG - Chr2:54051231-54051250 None:intergenic 50.0%
! CCCTGCTTGCTAGTAGACAT+AGG + Chr2:54053438-54053457 MsG0280009544.01.T01:intron 50.0%
! GAATGTGGCGGTGGTGTTTT+CGG - Chr2:54051232-54051251 None:intergenic 50.0%
! TCAGAAAATGTAACGGGGGG+CGG - Chr2:54054340-54054359 None:intergenic 50.0%
! TCCGGTTTTCGCTAGGACTA+AGG + Chr2:54051665-54051684 MsG0280009544.01.T01:CDS 50.0%
!! ATCTACCCTTTGGCTTGGCA+TGG + Chr2:54054835-54054854 MsG0280009544.01.T01:intron 50.0%
AACCGGAAGCGGTAAAACGG+CGG + Chr2:54051380-54051399 MsG0280009544.01.T01:CDS 55.0%
AACTCAGGGCCTGTTTCGAC+TGG - Chr2:54052073-54052092 None:intergenic 55.0%
AATCCAAGCGGCTCCTTACC+CGG + Chr2:54052316-54052335 MsG0280009544.01.T01:intron 55.0%
ACCGCCACATTCTCCGATCT+CGG + Chr2:54051240-54051259 MsG0280009544.01.T01:CDS 55.0%
ACTGCAAGAGCAGGTAGAGG+GGG + Chr2:54054205-54054224 MsG0280009544.01.T01:CDS 55.0%
ATTCTCCGATCTCGGCCTCT+CGG + Chr2:54051248-54051267 MsG0280009544.01.T01:CDS 55.0%
CGTACTGCAAGAGCAGGTAG+AGG + Chr2:54054202-54054221 MsG0280009544.01.T01:CDS 55.0%
CTATCTGGCCGTCACGTGAT+CGG + Chr2:54051348-54051367 MsG0280009544.01.T01:CDS 55.0%
CTTCGGATTGCGGTGGTTGT+TGG + Chr2:54051534-54051553 MsG0280009544.01.T01:CDS 55.0%
GCAGATCGAGTCCTGGATGT+TGG + Chr2:54052547-54052566 MsG0280009544.01.T01:CDS 55.0%
GGAATCGACGAAACCGGAAG+CGG + Chr2:54051369-54051388 MsG0280009544.01.T01:CDS 55.0%
GGATGAAGCAGATCGAGTCC+TGG + Chr2:54052540-54052559 MsG0280009544.01.T01:CDS 55.0%
GTTGGTCGTACTGCAAGAGC+AGG + Chr2:54054196-54054215 MsG0280009544.01.T01:CDS 55.0%
GTTTGGATCCCCTATGCTGC+TGG + Chr2:54055456-54055475 MsG0280009544.01.T01:intron 55.0%
TTGCGCTTCCGATTCTGCAG+CGG + Chr2:54051406-54051425 MsG0280009544.01.T01:CDS 55.0%
! ATGTGGCGGTGGTGTTTTCG+GGG - Chr2:54051230-54051249 None:intergenic 55.0%
! CAGAAAATGTAACGGGGGGC+GGG - Chr2:54054339-54054358 None:intergenic 55.0%
! CGGCTGGCTGAACATACGTT+TGG + Chr2:54051426-54051445 MsG0280009544.01.T01:CDS 55.0%
! TTGGTTCGTCGCTTCGGCTT+CGG + Chr2:54051517-54051536 MsG0280009544.01.T01:CDS 55.0%
!! CGCTTTGAGCCTTGTTACCC+AGG + Chr2:54054231-54054250 MsG0280009544.01.T01:CDS 55.0%
!! CGTCGATTCCGATCACGTGA+CGG - Chr2:54051359-54051378 None:intergenic 55.0%
!! TGCGGTGGTTGTTGGTGGTA+TGG + Chr2:54051542-54051561 MsG0280009544.01.T01:CDS 55.0%
ATCCAAGCGGCTCCTTACCC+GGG + Chr2:54052317-54052336 MsG0280009544.01.T01:intron 60.0%
CCATTCCGAGAGGCCGAGAT+CGG - Chr2:54051256-54051275 None:intergenic 60.0%
CGAGCTGGCGTTTCAGTTGG+CGG + Chr2:54051479-54051498 MsG0280009544.01.T01:CDS 60.0%
CGATCTCGGCCTCTCGGAAT+GGG + Chr2:54051254-54051273 MsG0280009544.01.T01:CDS 60.0%
CGGATTGCGGTGGTTGTTGG+TGG + Chr2:54051537-54051556 MsG0280009544.01.T01:CDS 60.0%
GAGATCGGAGAATGTGGCGG+TGG - Chr2:54051241-54051260 None:intergenic 60.0%
GAGGCCGAGATCGGAGAATG+TGG - Chr2:54051247-54051266 None:intergenic 60.0%
GCAACTGATGTTGCTGGCCG+TGG + Chr2:54054016-54054035 MsG0280009544.01.T01:CDS 60.0%
GCCGAGATCGGAGAATGTGG+CGG - Chr2:54051244-54051263 None:intergenic 60.0%
GTCGCTTCGGCTTCGGATTG+CGG + Chr2:54051524-54051543 MsG0280009544.01.T01:CDS 60.0%
TCAGCCAGCCGCTGCAGAAT+CGG - Chr2:54051417-54051436 None:intergenic 60.0%
TGATGTTGCTGGCCGTGGTC+TGG + Chr2:54054021-54054040 MsG0280009544.01.T01:CDS 60.0%
TGGATCCCCTATGCTGCTGG+TGG + Chr2:54055459-54055478 MsG0280009544.01.T01:intron 60.0%
! AATGTAACGGGGGGCGGGAT+AGG - Chr2:54054334-54054353 None:intergenic 60.0%
!! TGCCGCCGTTTTACCGCTTC+CGG - Chr2:54051385-54051404 None:intergenic 60.0%
CCGATCTCGGCCTCTCGGAA+TGG + Chr2:54051253-54051272 MsG0280009544.01.T01:CDS 65.0%
GCGCGAGCTGGCGTTTCAGT+TGG + Chr2:54051476-54051495 MsG0280009544.01.T01:CDS 65.0%
GCTTCCGATTCTGCAGCGGC+TGG + Chr2:54051410-54051429 MsG0280009544.01.T01:CDS 65.0%
GCTTCGGCTTCGGATTGCGG+TGG + Chr2:54051527-54051546 MsG0280009544.01.T01:CDS 65.0%
TGAAACGCCAGCTCGCGCGT+GGG - Chr2:54051474-54051493 None:intergenic 65.0%
! CAGTGTTGTTGCACGCGCCG+TGG - Chr2:54051315-54051334 None:intergenic 65.0%
! GCGGAGCAGTTTAGGGCGCT+TGG + Chr2:54051498-54051517 MsG0280009544.01.T01:CDS 65.0%
! GGGCGCTTGGTTCGTCGCTT+CGG + Chr2:54051511-54051530 MsG0280009544.01.T01:CDS 65.0%
!! GGCGGTGGTGTTTTCGGGGT+TGG - Chr2:54051226-54051245 None:intergenic 65.0%
CACCCGGGTAAGGAGCCGCT+TGG - Chr2:54052322-54052341 None:intergenic 70.0%
CTGAAACGCCAGCTCGCGCG+TGG - Chr2:54051475-54051494 None:intergenic 70.0%
! GGTGACGCCCACGCGCGAGC+TGG + Chr2:54051464-54051483 MsG0280009544.01.T01:CDS 80.0%
Chromosome Type Strat End Strand Name
Chr2 gene 54051044 54057097 54051044 ID=MsG0280009544.01;Name=MsG0280009544.01
Chr2 mRNA 54051044 54057097 54051044 ID=MsG0280009544.01.T01;Parent=MsG0280009544.01;Name=MsG0280009544.01.T01;_AED=0.37;_eAED=0.37;_QI=46|0.8|0.83|1|1|1|6|394|470
Chr2 exon 54056527 54057097 54056527 ID=MsG0280009544.01.T01:exon:6081;Parent=MsG0280009544.01.T01
Chr2 exon 54056266 54056364 54056266 ID=MsG0280009544.01.T01:exon:6080;Parent=MsG0280009544.01.T01
Chr2 exon 54054171 54054252 54054171 ID=MsG0280009544.01.T01:exon:6079;Parent=MsG0280009544.01.T01
Chr2 exon 54053952 54054086 54053952 ID=MsG0280009544.01.T01:exon:6078;Parent=MsG0280009544.01.T01
Chr2 exon 54052529 54052851 54052529 ID=MsG0280009544.01.T01:exon:6077;Parent=MsG0280009544.01.T01
Chr2 exon 54051044 54051686 54051044 ID=MsG0280009544.01.T01:exon:6076;Parent=MsG0280009544.01.T01
Chr2 five_prime_UTR 54051044 54051089 54051044 ID=MsG0280009544.01.T01:five_prime_utr;Parent=MsG0280009544.01.T01
Chr2 CDS 54051090 54051686 54051090 ID=MsG0280009544.01.T01:cds;Parent=MsG0280009544.01.T01
Chr2 CDS 54052529 54052851 54052529 ID=MsG0280009544.01.T01:cds;Parent=MsG0280009544.01.T01
Chr2 CDS 54053952 54054086 54053952 ID=MsG0280009544.01.T01:cds;Parent=MsG0280009544.01.T01
Chr2 CDS 54054171 54054252 54054171 ID=MsG0280009544.01.T01:cds;Parent=MsG0280009544.01.T01
Chr2 CDS 54056266 54056364 54056266 ID=MsG0280009544.01.T01:cds;Parent=MsG0280009544.01.T01
Chr2 CDS 54056527 54056703 54056527 ID=MsG0280009544.01.T01:cds;Parent=MsG0280009544.01.T01
Chr2 three_prime_UTR 54056704 54057097 54056704 ID=MsG0280009544.01.T01:three_prime_utr;Parent=MsG0280009544.01.T01
Gene Sequence

>MsG0280009544.01.T01

ATGGAGCAACCACAACATCTTGTAGACCAAAATTTCCCACTGTTCAAACCATCTCGTAAACCATCCATAAACCCTTCACTCCCCATTTCCAATAAACCTCAAAACGACGTCGTTACACACGAAACCCTTAATTCCAACCCCGAAAACACCACCGCCACATTCTCCGATCTCGGCCTCTCGGAATGGGCTGTAAAAACCTGCAAAGAACTCGGAATGAAAACTCCACGGCGCGTGCAACAACACTGCATCCCTCAGATTCTATCTGGCCGTCACGTGATCGGAATCGACGAAACCGGAAGCGGTAAAACGGCGGCATTTGCGCTTCCGATTCTGCAGCGGCTGGCTGAACATACGTTTGGTGTTTTTGCGCTTGTGGTGACGCCCACGCGCGAGCTGGCGTTTCAGTTGGCGGAGCAGTTTAGGGCGCTTGGTTCGTCGCTTCGGCTTCGGATTGCGGTGGTTGTTGGTGGTATGGATATGCTTAGACAGACTAAAGAGTTGGTTGCTCGACCGCATCTTGTTATTGCTACTCCTGGGAGGATTAAGGTTTTGCTTAAGGATAATCCTGAAATTGCTCCGGTTTTCGCTAGGACTAAGTTTCTTGTCTTGGATGAAGCAGATCGAGTCCTGGATGTTGGTTTTCAGGATGAATTGAAATTTATATTTCAGTGCTTACCAGAAAACCGGCAAAACCTATTTTTTTCTGCAACAACAACTAGTAATTTACAAAAATTGCGTGAGCGTTATCAAGATAAGTTGTATGCCTTCGAAGCTTATGAAGGGTTTAAGACGGTTGAAAATCTTAAGCAACAGGTTGTATTCATCCCTAAAAATGTGAAGGATGTATATTTGTTGCACATCTTGTCTAAAATGGAAGATATGGGTATTAGGTCTGCCATCGTCTTTGTCTCCACATGCAGATCACAGGCTCAGAGGCTTGAAGCACTTCATGACTTTAAATCGGGAAAGGTTTCTGTATTACTAGCAACTGATGTTGCTGGCCGTGGTCTGGATATACCTACAGTTGACCTTGTTATCAATTATGATGTTCCCAGGTTTCCAAGAGATTATATCCATCGTGTTGGTCGTACTGCAAGAGCAGGTAGAGGGGGACTCGCTTTGAGCCTTGTTACCCAGAATGATGTTGATCTCATTCGGGAAATAGAGACCCTTATTGAAAGGCAACTTGAAATGATTGAATACAAAGAAAATGAGGTCCTTTCTCTCATGAAAAAGGTTTTCAGTGCTAAGAATGTTGCAAAAATGAAGATGATGGATGATGGGTTTGAAGAGAAAGCGAAAGAGCGGAAAAAACAGAAACTGAAAACGCTAGAAGAGAAAGGATTATTGAAGCAAAGAAGTAAGAGAAAAGAAATAAAGAATTTCCAAAGGGAAATAAACAGGAAAAAGTGA
Protein sequence

>MsG0280009544.01.T01

MEQPQHLVDQNFPLFKPSRKPSINPSLPISNKPQNDVVTHETLNSNPENTTATFSDLGLSEWAVKTCKELGMKTPRRVQQHCIPQILSGRHVIGIDETGSGKTAAFALPILQRLAEHTFGVFALVVTPTRELAFQLAEQFRALGSSLRLRIAVVVGGMDMLRQTKELVARPHLVIATPGRIKVLLKDNPEIAPVFARTKFLVLDEADRVLDVGFQDELKFIFQCLPENRQNLFFSATTTSNLQKLRERYQDKLYAFEAYEGFKTVENLKQQVVFIPKNVKDVYLLHILSKMEDMGIRSAIVFVSTCRSQAQRLEALHDFKSGKVSVLLATDVAGRGLDIPTVDLVINYDVPRFPRDYIHRVGRTARAGRGGLALSLVTQNDVDLIREIETLIERQLEMIEYKENEVLSLMKKVFSAKNVAKMKMMDDGFEEKAKERKKQKLKTLEEKGLLKQRSKRKEIKNFQREINRKK*