Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880047584.01.T01 | XP_003610294.1 | 95.695 | 302 | 13 | 0 | 1 | 302 | 1 | 302 | 0 | 602 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880047584.01.T01 | Q9FDX1 | 56.291 | 302 | 127 | 3 | 3 | 302 | 2 | 300 | 4.32E-122 | 354 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880047584.01.T01 | G7JFK8 | 95.695 | 302 | 13 | 0 | 1 | 302 | 1 | 302 | 0.0 | 602 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000218.01 | MsG0880047584.01 | 0.808966 | 2.388981e-50 | 1.384997e-47 |
| MsG0280010596.01 | MsG0880047584.01 | 0.829492 | 4.993818e-55 | 5.118998e-52 |
| MsG0480022667.01 | MsG0880047584.01 | 0.812097 | 5.033116e-51 | 3.170761e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880047584.01.T01 | MTR_4g130620 | 95.695 | 302 | 13 | 0 | 1 | 302 | 1 | 302 | 0.0 | 602 |
| MsG0880047584.01.T01 | MTR_4g130630 | 61.925 | 239 | 47 | 3 | 3 | 241 | 24 | 218 | 1.93e-94 | 278 |
| MsG0880047584.01.T01 | MTR_2g018910 | 27.509 | 269 | 165 | 7 | 5 | 271 | 24 | 264 | 6.04e-21 | 91.7 |
| MsG0880047584.01.T01 | MTR_8g091730 | 30.208 | 288 | 159 | 10 | 5 | 282 | 19 | 274 | 6.50e-21 | 91.3 |
| MsG0880047584.01.T01 | MTR_2g018940 | 27.273 | 253 | 155 | 5 | 3 | 253 | 19 | 244 | 1.11e-19 | 88.2 |
| MsG0880047584.01.T01 | MTR_3g080330 | 27.957 | 279 | 167 | 9 | 1 | 275 | 1 | 249 | 1.75e-18 | 83.6 |
| MsG0880047584.01.T01 | MTR_5g064480 | 26.250 | 240 | 150 | 6 | 9 | 247 | 10 | 223 | 2.11e-18 | 84.3 |
| MsG0880047584.01.T01 | MTR_2g018950 | 26.800 | 250 | 164 | 5 | 3 | 251 | 18 | 249 | 1.47e-17 | 82.0 |
| MsG0880047584.01.T01 | MTR_3g074900 | 27.586 | 261 | 158 | 6 | 9 | 266 | 10 | 242 | 3.25e-17 | 80.9 |
| MsG0880047584.01.T01 | MTR_3g080280 | 27.740 | 292 | 173 | 10 | 1 | 288 | 14 | 271 | 1.70e-16 | 78.6 |
| MsG0880047584.01.T01 | MTR_3g065590 | 29.368 | 269 | 164 | 8 | 9 | 275 | 23 | 267 | 2.09e-16 | 78.6 |
| MsG0880047584.01.T01 | MTR_6g015890 | 27.473 | 273 | 164 | 10 | 9 | 274 | 20 | 265 | 3.15e-16 | 77.8 |
| MsG0880047584.01.T01 | MTR_3g065610 | 27.941 | 272 | 164 | 7 | 9 | 275 | 23 | 267 | 3.55e-16 | 77.8 |
| MsG0880047584.01.T01 | MTR_5g098180 | 26.033 | 242 | 128 | 5 | 9 | 247 | 10 | 203 | 3.70e-16 | 77.0 |
| MsG0880047584.01.T01 | MTR_6g015900 | 27.178 | 287 | 169 | 10 | 1 | 274 | 3 | 262 | 7.02e-16 | 76.6 |
| MsG0880047584.01.T01 | MTR_3g067625 | 30.000 | 250 | 144 | 6 | 2 | 250 | 14 | 233 | 3.09e-14 | 73.2 |
| MsG0880047584.01.T01 | MTR_3g080360 | 26.207 | 290 | 173 | 10 | 1 | 284 | 29 | 283 | 4.42e-14 | 71.6 |
| MsG0880047584.01.T01 | MTR_3g080310 | 26.642 | 274 | 166 | 11 | 1 | 269 | 1 | 244 | 9.04e-14 | 70.1 |
| MsG0880047584.01.T01 | MTR_2g021030 | 24.219 | 256 | 150 | 6 | 57 | 268 | 329 | 584 | 1.57e-13 | 71.2 |
| MsG0880047584.01.T01 | MTR_2g021030 | 31.250 | 176 | 108 | 6 | 102 | 266 | 179 | 352 | 5.02e-12 | 66.6 |
| MsG0880047584.01.T01 | MTR_5g027890 | 25.362 | 276 | 160 | 8 | 2 | 269 | 14 | 251 | 7.64e-13 | 67.8 |
| MsG0880047584.01.T01 | MTR_3g065620 | 26.335 | 281 | 166 | 9 | 9 | 285 | 18 | 261 | 7.71e-13 | 67.8 |
| MsG0880047584.01.T01 | MTR_3g107280 | 29.940 | 167 | 104 | 4 | 102 | 257 | 227 | 391 | 1.04e-12 | 68.9 |
| MsG0880047584.01.T01 | MTR_3g088895 | 22.648 | 287 | 181 | 7 | 1 | 285 | 31 | 278 | 1.06e-12 | 68.2 |
| MsG0880047584.01.T01 | MTR_1g012520 | 26.554 | 177 | 121 | 3 | 102 | 269 | 229 | 405 | 2.04e-12 | 67.8 |
| MsG0880047584.01.T01 | MTR_2g021030 | 31.250 | 176 | 108 | 6 | 102 | 266 | 179 | 352 | 2.96e-12 | 67.0 |
| MsG0880047584.01.T01 | MTR_1g029500 | 25.000 | 264 | 158 | 7 | 8 | 268 | 25 | 251 | 1.28e-11 | 64.7 |
| MsG0880047584.01.T01 | MTR_3g067990 | 27.126 | 247 | 137 | 7 | 5 | 250 | 19 | 223 | 7.68e-11 | 61.6 |
| MsG0880047584.01.T01 | MTR_1g050478 | 24.215 | 223 | 154 | 5 | 37 | 248 | 258 | 476 | 9.53e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880047584.01.T01 | AT5G57900 | 56.291 | 302 | 127 | 3 | 3 | 302 | 2 | 300 | 4.40e-123 | 354 |
| MsG0880047584.01.T01 | AT4G30640 | 52.482 | 282 | 133 | 1 | 8 | 289 | 19 | 299 | 3.01e-100 | 296 |
| MsG0880047584.01.T01 | AT4G05470 | 30.996 | 271 | 159 | 10 | 9 | 272 | 46 | 295 | 2.43e-21 | 92.4 |
| MsG0880047584.01.T01 | AT4G05460 | 30.116 | 259 | 135 | 8 | 1 | 251 | 11 | 231 | 1.75e-19 | 87.0 |
| MsG0880047584.01.T01 | AT4G05475 | 31.317 | 281 | 154 | 12 | 2 | 272 | 33 | 284 | 7.61e-19 | 85.5 |
| MsG0880047584.01.T01 | AT4G03630 | 30.303 | 198 | 118 | 5 | 77 | 272 | 24 | 203 | 4.43e-18 | 81.6 |
| MsG0880047584.01.T01 | AT4G08980 | 29.365 | 252 | 145 | 8 | 1 | 247 | 1 | 224 | 1.06e-17 | 82.4 |
| MsG0880047584.01.T01 | AT4G08980 | 29.365 | 252 | 145 | 8 | 1 | 247 | 1 | 224 | 1.06e-17 | 82.4 |
| MsG0880047584.01.T01 | AT4G08980 | 29.365 | 252 | 145 | 8 | 1 | 247 | 1 | 224 | 1.06e-17 | 82.4 |
| MsG0880047584.01.T01 | AT4G08980 | 29.365 | 252 | 145 | 8 | 1 | 247 | 1 | 224 | 1.06e-17 | 82.4 |
| MsG0880047584.01.T01 | AT4G08980 | 29.365 | 252 | 145 | 8 | 1 | 247 | 1 | 224 | 1.06e-17 | 82.4 |
| MsG0880047584.01.T01 | AT4G05497 | 27.843 | 255 | 152 | 5 | 1 | 251 | 13 | 239 | 3.33e-17 | 79.7 |
| MsG0880047584.01.T01 | AT5G52480 | 33.143 | 175 | 98 | 4 | 79 | 252 | 16 | 172 | 2.37e-14 | 71.6 |
| MsG0880047584.01.T01 | AT4G15475 | 26.131 | 199 | 115 | 2 | 102 | 268 | 386 | 584 | 3.90e-14 | 73.2 |
| MsG0880047584.01.T01 | AT4G15475 | 26.066 | 211 | 141 | 6 | 68 | 265 | 298 | 506 | 7.22e-11 | 63.2 |
| MsG0880047584.01.T01 | AT5G25350 | 25.974 | 231 | 132 | 4 | 3 | 220 | 49 | 253 | 6.48e-14 | 72.4 |
| MsG0880047584.01.T01 | AT1G21410 | 24.476 | 286 | 177 | 7 | 1 | 285 | 20 | 267 | 9.90e-13 | 68.2 |
| MsG0880047584.01.T01 | AT1G21410 | 24.476 | 286 | 177 | 7 | 1 | 285 | 20 | 267 | 9.90e-13 | 68.2 |
| MsG0880047584.01.T01 | AT5G52480 | 32.143 | 168 | 91 | 5 | 106 | 272 | 6 | 151 | 6.03e-12 | 64.3 |
Find 89 sgRNAs with CRISPR-Local
Find 121 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATTGCATGTCCAAATTTA+AGG | 0.116830 | 8:+88329395 | MsG0880047584.01.T01:CDS |
| ATGTCCAATTCCCTTAAATT+TGG | 0.182958 | 8:-88329406 | None:intergenic |
| GACCTTGGAATGTAGAAATT+TGG | 0.195194 | 8:-88329799 | None:intergenic |
| GAACTAATTGGAATATTATT+AGG | 0.243633 | 8:-88330129 | None:intergenic |
| CTCGAGTTCTTGGATTTGTC+TGG | 0.258906 | 8:+88329703 | MsG0880047584.01.T01:CDS |
| ATTATTAGGTAAATCCATTA+TGG | 0.265641 | 8:-88330115 | None:intergenic |
| AGATCTTAATTGCATTTCTA+TGG | 0.275391 | 8:+88329970 | MsG0880047584.01.T01:three_prime_UTR |
| AACAATAGAAGGAACGAAAA+TGG | 0.291133 | 8:+88328218 | MsG0880047584.01.T01:exon |
| ATTGACAACACCTCAAGATT+TGG | 0.303401 | 8:-88329328 | None:intergenic |
| TCTCTTGAGAACTTTAAGTT+TGG | 0.313836 | 8:-88329485 | None:intergenic |
| ATGTCCAAATTTAAGGGAAT+TGG | 0.331112 | 8:+88329402 | MsG0880047584.01.T01:CDS |
| TCAAAGCAAAGAGAACTAAT+TGG | 0.333423 | 8:-88330141 | None:intergenic |
| TTGGATAATCTTCTTATTAA+CGG | 0.347066 | 8:-88329898 | None:intergenic |
| AGCAGTGTCGAATACGAATC+TGG | 0.347731 | 8:-88328518 | None:intergenic |
| AATCAATTTGAGATTCGAAT+TGG | 0.372432 | 8:-88328452 | None:intergenic |
| GTGTCCTAACCTCGAGTTCT+TGG | 0.375787 | 8:+88329693 | MsG0880047584.01.T01:CDS |
| GTCTTTCAAATGTGACAAAC+TGG | 0.376236 | 8:-88329767 | None:intergenic |
| TATTGCATGTCCAAATTTAA+GGG | 0.384078 | 8:+88329396 | MsG0880047584.01.T01:CDS |
| CGATGCTTGTTTGCAAATCA+TGG | 0.402311 | 8:+88328334 | MsG0880047584.01.T01:CDS |
| AGGCCTCAATTCAATATGTC+AGG | 0.419961 | 8:+88329669 | MsG0880047584.01.T01:CDS |
| TGAAATAACTCATGAGTCAT+TGG | 0.425193 | 8:+88329441 | MsG0880047584.01.T01:CDS |
| TCGAGTGGTTTGTCGAAGTA+AGG | 0.429555 | 8:-88328408 | None:intergenic |
| GTCTAAATCCAAACAATAGA+AGG | 0.431782 | 8:+88328207 | MsG0880047584.01.T01:five_prime_UTR |
| TGGACTCACACTATTCATAT+TGG | 0.444780 | 8:-88329917 | None:intergenic |
| AAGAGATGGTTCTTCCTTGA+AGG | 0.448029 | 8:-88328364 | None:intergenic |
| GAGGCCTTTCGCTGTAAACT+TGG | 0.453961 | 8:-88329653 | None:intergenic |
| TCATTGTCTCAAGTCCATAA+TGG | 0.454117 | 8:+88330101 | MsG0880047584.01.T01:three_prime_UTR |
| CTTCAAAGCTCAGTCGAGAT+AGG | 0.456485 | 8:-88328296 | None:intergenic |
| CATGAGTCATTGGTGCTGAT+TGG | 0.460875 | 8:+88329451 | MsG0880047584.01.T01:CDS |
| AGGAACAATCCCTACGTGTT+GGG | 0.461780 | 8:-88329533 | None:intergenic |
| ATCTAGAGTGCCTAGAGATT+AGG | 0.467827 | 8:+88329626 | MsG0880047584.01.T01:CDS |
| TGCTTCGTTCTATCGTTCAA+TGG | 0.473753 | 8:+88328478 | MsG0880047584.01.T01:CDS |
| TTCTCCAAGTTTACAGCGAA+AGG | 0.474871 | 8:+88329649 | MsG0880047584.01.T01:CDS |
| TCGAGTTCTTGGATTTGTCT+GGG | 0.474983 | 8:+88329704 | MsG0880047584.01.T01:CDS |
| AAATCCAAGAACTCGAGGTT+AGG | 0.476925 | 8:-88329697 | None:intergenic |
| CTCTCGCTCTTGTTGCCCAA+AGG | 0.477676 | 8:+88328550 | MsG0880047584.01.T01:CDS |
| AGAGACTAGTAGAAAGAAGA+TGG | 0.487755 | 8:-88329945 | None:intergenic |
| ATCATGGTTCAACGCCTTCA+AGG | 0.493134 | 8:+88328350 | MsG0880047584.01.T01:CDS |
| GACTGAGCTTTGAAGATCAA+TGG | 0.501599 | 8:+88328304 | MsG0880047584.01.T01:CDS |
| AGCCAAATTTCTACATTCCA+AGG | 0.502665 | 8:+88329797 | MsG0880047584.01.T01:CDS |
| CAAGCATTTAGATAATCATC+AGG | 0.513285 | 8:-88329553 | None:intergenic |
| CAATTTGAGATTCGAATTGG+AGG | 0.520908 | 8:-88328449 | None:intergenic |
| TTCTATTGTTTGGATTTAGA+CGG | 0.521634 | 8:-88328205 | None:intergenic |
| GCCAATTAATTCGGGACGGA+GGG | 0.530047 | 8:+88328161 | None:intergenic |
| CTAAATGCTTGTCCGCAAGA+TGG | 0.533896 | 8:+88329565 | MsG0880047584.01.T01:CDS |
| GTCTTTCACACTGAAAGGTA+TGG | 0.537103 | 8:+88329823 | MsG0880047584.01.T01:CDS |
| ACTTGGAGAACCTAATCTCT+AGG | 0.544545 | 8:-88329636 | None:intergenic |
| GAGACTAGTAGAAAGAAGAT+GGG | 0.544566 | 8:-88329944 | None:intergenic |
| CAGGAACAATCCCTACGTGT+TGG | 0.549951 | 8:-88329534 | None:intergenic |
| TCAGTGTGAAAGACAGACCT+TGG | 0.551629 | 8:-88329814 | None:intergenic |
| GTCGAATACGAATCTGGGTG+AGG | 0.561288 | 8:-88328512 | None:intergenic |
| ACACTGAAAGGTATGGACAT+TGG | 0.568468 | 8:+88329830 | MsG0880047584.01.T01:CDS |
| AGAAGAAAGCGAAGCCGAGT+GGG | 0.572421 | 8:+88328242 | MsG0880047584.01.T01:CDS |
| TTGATCCATCCCAACACGTA+GGG | 0.572535 | 8:+88329524 | MsG0880047584.01.T01:CDS |
| GCAGTGTCGAATACGAATCT+GGG | 0.572832 | 8:-88328517 | None:intergenic |
| ACAATCCCTACGTGTTGGGA+TGG | 0.580699 | 8:-88329529 | None:intergenic |
| CGGTCAGATTCTGAAAACAT+CGG | 0.583031 | 8:-88329878 | None:intergenic |
| TTGAATACAGAGTGAAGAGA+TGG | 0.583057 | 8:-88328378 | None:intergenic |
| GGTCTGTCTTTCACACTGAA+AGG | 0.584105 | 8:+88329818 | MsG0880047584.01.T01:CDS |
| GGCCTCAATTCAATATGTCA+GGG | 0.586230 | 8:+88329670 | MsG0880047584.01.T01:CDS |
| AATTTGAGATTCGAATTGGA+GGG | 0.589623 | 8:-88328448 | None:intergenic |
| GTAGAAAGAAGATGGGGTGG+TGG | 0.591609 | 8:-88329937 | None:intergenic |
| AGCCAATTAATTCGGGACGG+AGG | 0.591743 | 8:+88328160 | None:intergenic |
| AACCACTCGAATCACCTCGC+TGG | 0.593688 | 8:+88328421 | MsG0880047584.01.T01:CDS |
| TTTCAGATGTCCAAATCTTG+AGG | 0.594226 | 8:+88329318 | MsG0880047584.01.T01:intron |
| ACCCCTGACATATTGAATTG+AGG | 0.601708 | 8:-88329672 | None:intergenic |
| CACTCGAATCACCTCGCTGG+TGG | 0.605026 | 8:+88328424 | MsG0880047584.01.T01:CDS |
| ATCTCTAGGCACTCTAGATG+AGG | 0.605463 | 8:-88329622 | None:intergenic |
| GCTTCAGAATCTCCATCTTG+CGG | 0.607040 | 8:-88329577 | None:intergenic |
| ACATATACATTACAGATACA+AGG | 0.610608 | 8:-88330070 | None:intergenic |
| GGGACGGAGGGAGTATTACA+AGG | 0.610970 | 8:+88328173 | MsG0880047584.01.T01:five_prime_UTR |
| CTAGTAGAAAGAAGATGGGG+TGG | 0.611383 | 8:-88329940 | None:intergenic |
| TTGAACGATAGAACGAAGCA+TGG | 0.611436 | 8:-88328475 | None:intergenic |
| ATTGGAGACTATATGATGAG+AGG | 0.614259 | 8:+88329848 | MsG0880047584.01.T01:CDS |
| AAGAAGAAAGCGAAGCCGAG+TGG | 0.615547 | 8:+88328241 | MsG0880047584.01.T01:CDS |
| CACCAGCGAGGTGATTCGAG+TGG | 0.616799 | 8:-88328423 | None:intergenic |
| ACGAGTCAACTCGCCCCACT+CGG | 0.634897 | 8:-88328256 | None:intergenic |
| GAAGAAAGCGAAGCCGAGTG+GGG | 0.639602 | 8:+88328243 | MsG0880047584.01.T01:CDS |
| AGGCATAGAATTAGCAATAG+CGG | 0.644825 | 8:-88329602 | None:intergenic |
| GTCGAGATAGGATGTTGATG+AGG | 0.664413 | 8:-88328284 | None:intergenic |
| AGCTTTGAAGATCAATGGCG+CGG | 0.665061 | 8:+88328309 | MsG0880047584.01.T01:CDS |
| AGACTAGTAGAAAGAAGATG+GGG | 0.670596 | 8:-88329943 | None:intergenic |
| GCCTCAATTCAATATGTCAG+GGG | 0.671731 | 8:+88329671 | MsG0880047584.01.T01:CDS |
| CTTGATCCATCCCAACACGT+AGG | 0.680143 | 8:+88329523 | MsG0880047584.01.T01:CDS |
| AATTGGAGGGTCCACCAGCG+AGG | 0.715747 | 8:-88328435 | None:intergenic |
| TAGAATCATCAGTAACACGA+GGG | 0.724815 | 8:-88329360 | None:intergenic |
| ATAGAATCATCAGTAACACG+AGG | 0.726964 | 8:-88329361 | None:intergenic |
| CAGACAAATCCAAGAACTCG+AGG | 0.731192 | 8:-88329702 | None:intergenic |
| GGACGGAGGGAGTATTACAA+GGG | 0.757684 | 8:+88328174 | MsG0880047584.01.T01:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTCAACTTAGAAATTAT+TGG | + | Chr8:88328589-88328608 | MsG0880047584.01.T01:intron | 15.0% |
| !! | ATTTCAACTTAGAAATTATT+GGG | + | Chr8:88328590-88328609 | MsG0880047584.01.T01:intron | 15.0% |
| !! | TTAATCTATAACCTTATATT+TGG | - | Chr8:88328763-88328782 | None:intergenic | 15.0% |
| !! | TTTAAATGTATCCAAATATA+AGG | + | Chr8:88328749-88328768 | MsG0880047584.01.T01:intron | 15.0% |
| !!! | ATAATTTCTAAGTTGAAATT+TGG | - | Chr8:88328589-88328608 | None:intergenic | 15.0% |
| !!! | TTTTTTTGTTTGTTTTGAAT+CGG | + | Chr8:88328823-88328842 | MsG0880047584.01.T01:intron | 15.0% |
| !! | ATTATTAGGTAAATCCATTA+TGG | - | Chr8:88330118-88330137 | None:intergenic | 20.0% |
| !! | GAACTAATTGGAATATTATT+AGG | - | Chr8:88330132-88330151 | None:intergenic | 20.0% |
| !! | TTGGATAATCTTCTTATTAA+CGG | - | Chr8:88329901-88329920 | None:intergenic | 20.0% |
| !!! | TCAAGAGAAATTTTATGAAT+TGG | + | Chr8:88329500-88329519 | MsG0880047584.01.T01:CDS | 20.0% |
| ! | ACAGTTATAATGCTATGAAA+GGG | - | Chr8:88328664-88328683 | None:intergenic | 25.0% |
| ! | ACATATACATTACAGATACA+AGG | - | Chr8:88330073-88330092 | None:intergenic | 25.0% |
| ! | AGATCTTAATTGCATTTCTA+TGG | + | Chr8:88329970-88329989 | MsG0880047584.01.T01:three_prime_UTR | 25.0% |
| ! | CTTTATCAATTGCGAATATA+GGG | + | Chr8:88328895-88328914 | MsG0880047584.01.T01:intron | 25.0% |
| ! | TACAGTTATAATGCTATGAA+AGG | - | Chr8:88328665-88328684 | None:intergenic | 25.0% |
| ! | TATTGCATGTCCAAATTTAA+GGG | + | Chr8:88329396-88329415 | MsG0880047584.01.T01:CDS | 25.0% |
| ! | TCTTTATCAATTGCGAATAT+AGG | + | Chr8:88328894-88328913 | MsG0880047584.01.T01:intron | 25.0% |
| ! | TTCTATTGTTTGGATTTAGA+CGG | - | Chr8:88328208-88328227 | None:intergenic | 25.0% |
| !! | AAAATTGAATCATTTTGTGG+TGG | + | Chr8:88328710-88328729 | MsG0880047584.01.T01:intron | 25.0% |
| !! | AATCAATTTGAGATTCGAAT+TGG | - | Chr8:88328455-88328474 | None:intergenic | 25.0% |
| !! | ATAGATTTTCACTCTCAAAT+TGG | + | Chr8:88328635-88328654 | MsG0880047584.01.T01:intron | 25.0% |
| !! | TAGATTTTCACTCTCAAATT+GGG | + | Chr8:88328636-88328655 | MsG0880047584.01.T01:intron | 25.0% |
| !!! | GTTGCTTTTATAAGCTATAT+TGG | + | Chr8:88329054-88329073 | MsG0880047584.01.T01:intron | 25.0% |
| !!! | TGTTTTGTTTTTTCGGTTTT+GGG | + | Chr8:88329266-88329285 | MsG0880047584.01.T01:intron | 25.0% |
| !!! | TTGTTTTGTTTTTTCGGTTT+TGG | + | Chr8:88329265-88329284 | MsG0880047584.01.T01:intron | 25.0% |
| AACAATAGAAGGAACGAAAA+TGG | + | Chr8:88328218-88328237 | MsG0880047584.01.T01:exon | 30.0% | |
| AATCCAAACAGGTATAATAC+TGG | + | Chr8:88329191-88329210 | MsG0880047584.01.T01:intron | 30.0% | |
| ATGTCCAAATTTAAGGGAAT+TGG | + | Chr8:88329402-88329421 | MsG0880047584.01.T01:CDS | 30.0% | |
| ATGTCCAATTCCCTTAAATT+TGG | - | Chr8:88329409-88329428 | None:intergenic | 30.0% | |
| CAAGCATTTAGATAATCATC+AGG | - | Chr8:88329556-88329575 | None:intergenic | 30.0% | |
| CTATTGCATGTCCAAATTTA+AGG | + | Chr8:88329395-88329414 | MsG0880047584.01.T01:CDS | 30.0% | |
| GTCTAAATCCAAACAATAGA+AGG | + | Chr8:88328207-88328226 | MsG0880047584.01.T01:five_prime_UTR | 30.0% | |
| TCAAATAAGCTAATCCAAAC+AGG | + | Chr8:88329180-88329199 | MsG0880047584.01.T01:intron | 30.0% | |
| TGAAATAACTCATGAGTCAT+TGG | + | Chr8:88329441-88329460 | MsG0880047584.01.T01:CDS | 30.0% | |
| ! | AATTTGAGATTCGAATTGGA+GGG | - | Chr8:88328451-88328470 | None:intergenic | 30.0% |
| ! | ATTCCAATTAGTTCTCTTTG+CGG | + | Chr8:88330138-88330157 | MsG0880047584.01.T01:three_prime_UTR | 30.0% |
| ! | GGCAAAATTGAATCATTTTG+TGG | + | Chr8:88328707-88328726 | MsG0880047584.01.T01:intron | 30.0% |
| ! | TCTCTTGAGAACTTTAAGTT+TGG | - | Chr8:88329488-88329507 | None:intergenic | 30.0% |
| ! | TTTTCGTTCCTTCTATTGTT+TGG | - | Chr8:88328218-88328237 | None:intergenic | 30.0% |
| !!! | CTGTATGCTTTGTTTTGTTT+TGG | + | Chr8:88328680-88328699 | MsG0880047584.01.T01:intron | 30.0% |
| !!! | GCTGCTTTGTTTTGTTTTTT+CGG | + | Chr8:88329259-88329278 | MsG0880047584.01.T01:intron | 30.0% |
| !!! | TATGCTTTGTTTTGTTTTGG+AGG | + | Chr8:88328683-88328702 | MsG0880047584.01.T01:intron | 30.0% |
| AGACTAGTAGAAAGAAGATG+GGG | - | Chr8:88329946-88329965 | None:intergenic | 35.0% | |
| AGAGACTAGTAGAAAGAAGA+TGG | - | Chr8:88329948-88329967 | None:intergenic | 35.0% | |
| AGCCAAATTTCTACATTCCA+AGG | + | Chr8:88329797-88329816 | MsG0880047584.01.T01:CDS | 35.0% | |
| AGGCATAGAATTAGCAATAG+CGG | - | Chr8:88329605-88329624 | None:intergenic | 35.0% | |
| ATAGAATCATCAGTAACACG+AGG | - | Chr8:88329364-88329383 | None:intergenic | 35.0% | |
| ATTGACAACACCTCAAGATT+TGG | - | Chr8:88329331-88329350 | None:intergenic | 35.0% | |
| ATTGGAGACTATATGATGAG+AGG | + | Chr8:88329848-88329867 | MsG0880047584.01.T01:CDS | 35.0% | |
| GACCTTGGAATGTAGAAATT+TGG | - | Chr8:88329802-88329821 | None:intergenic | 35.0% | |
| GAGACTAGTAGAAAGAAGAT+GGG | - | Chr8:88329947-88329966 | None:intergenic | 35.0% | |
| GGAAGAAAGTTTGAACCTTT+GGG | - | Chr8:88328568-88328587 | None:intergenic | 35.0% | |
| GTCTTTCAAATGTGACAAAC+TGG | - | Chr8:88329770-88329789 | None:intergenic | 35.0% | |
| GTTCCAGTATTATACCTGTT+TGG | - | Chr8:88329197-88329216 | None:intergenic | 35.0% | |
| TAGAATCATCAGTAACACGA+GGG | - | Chr8:88329363-88329382 | None:intergenic | 35.0% | |
| TCATTGTCTCAAGTCCATAA+TGG | + | Chr8:88330101-88330120 | MsG0880047584.01.T01:three_prime_UTR | 35.0% | |
| TGGAAGAAAGTTTGAACCTT+TGG | - | Chr8:88328569-88328588 | None:intergenic | 35.0% | |
| TGGACTCACACTATTCATAT+TGG | - | Chr8:88329920-88329939 | None:intergenic | 35.0% | |
| TTGAATACAGAGTGAAGAGA+TGG | - | Chr8:88328381-88328400 | None:intergenic | 35.0% | |
| TTTCAGATGTCCAAATCTTG+AGG | + | Chr8:88329318-88329337 | MsG0880047584.01.T01:intron | 35.0% | |
| ! | CAATTTGAGATTCGAATTGG+AGG | - | Chr8:88328452-88328471 | None:intergenic | 35.0% |
| ! | TTCCAATTAGTTCTCTTTGC+GGG | + | Chr8:88330139-88330158 | MsG0880047584.01.T01:three_prime_UTR | 35.0% |
| !! | ATAAGTTTTGTGAGACTGCT+TGG | - | Chr8:88329146-88329165 | None:intergenic | 35.0% |
| !! | TAAGTTTTGTGAGACTGCTT+GGG | - | Chr8:88329145-88329164 | None:intergenic | 35.0% |
| !!! | TTGTTTTTTCGGTTTTGGGT+TGG | + | Chr8:88329270-88329289 | MsG0880047584.01.T01:intron | 35.0% |
| AAATCCAAGAACTCGAGGTT+AGG | - | Chr8:88329700-88329719 | None:intergenic | 40.0% | |
| AAGAGATGGTTCTTCCTTGA+AGG | - | Chr8:88328367-88328386 | None:intergenic | 40.0% | |
| ACCCCTGACATATTGAATTG+AGG | - | Chr8:88329675-88329694 | None:intergenic | 40.0% | |
| ACTTGGAGAACCTAATCTCT+AGG | - | Chr8:88329639-88329658 | None:intergenic | 40.0% | |
| AGGCCTCAATTCAATATGTC+AGG | + | Chr8:88329669-88329688 | MsG0880047584.01.T01:CDS | 40.0% | |
| CGATGCTTGTTTGCAAATCA+TGG | + | Chr8:88328334-88328353 | MsG0880047584.01.T01:CDS | 40.0% | |
| GCCTCAATTCAATATGTCAG+GGG | + | Chr8:88329671-88329690 | MsG0880047584.01.T01:CDS | 40.0% | |
| GCTTATTTGAGCTTAGCTAC+TGG | - | Chr8:88329170-88329189 | None:intergenic | 40.0% | |
| GGCCTCAATTCAATATGTCA+GGG | + | Chr8:88329670-88329689 | MsG0880047584.01.T01:CDS | 40.0% | |
| GTCTTTCACACTGAAAGGTA+TGG | + | Chr8:88329823-88329842 | MsG0880047584.01.T01:CDS | 40.0% | |
| TCGAGTTCTTGGATTTGTCT+GGG | + | Chr8:88329704-88329723 | MsG0880047584.01.T01:CDS | 40.0% | |
| TGCTTCGTTCTATCGTTCAA+TGG | + | Chr8:88328478-88328497 | MsG0880047584.01.T01:CDS | 40.0% | |
| TTCTCCAAGTTTACAGCGAA+AGG | + | Chr8:88329649-88329668 | MsG0880047584.01.T01:CDS | 40.0% | |
| TTGAACGATAGAACGAAGCA+TGG | - | Chr8:88328478-88328497 | None:intergenic | 40.0% | |
| ! | ACACTGAAAGGTATGGACAT+TGG | + | Chr8:88329830-88329849 | MsG0880047584.01.T01:CDS | 40.0% |
| ! | ATCTAGAGTGCCTAGAGATT+AGG | + | Chr8:88329626-88329645 | MsG0880047584.01.T01:CDS | 40.0% |
| ! | CGGTCAGATTCTGAAAACAT+CGG | - | Chr8:88329881-88329900 | None:intergenic | 40.0% |
| !! | GACTGAGCTTTGAAGATCAA+TGG | + | Chr8:88328304-88328323 | MsG0880047584.01.T01:CDS | 40.0% |
| !!! | GCTTTGTTTTGTTTTGGAGG+AGG | + | Chr8:88328686-88328705 | MsG0880047584.01.T01:intron | 40.0% |
| AGGAACAATCCCTACGTGTT+GGG | - | Chr8:88329536-88329555 | None:intergenic | 45.0% | |
| ATCATGGTTCAACGCCTTCA+AGG | + | Chr8:88328350-88328369 | MsG0880047584.01.T01:CDS | 45.0% | |
| ATCTCTAGGCACTCTAGATG+AGG | - | Chr8:88329625-88329644 | None:intergenic | 45.0% | |
| CAGACAAATCCAAGAACTCG+AGG | - | Chr8:88329705-88329724 | None:intergenic | 45.0% | |
| CTAAATGCTTGTCCGCAAGA+TGG | + | Chr8:88329565-88329584 | MsG0880047584.01.T01:CDS | 45.0% | |
| CTAGTAGAAAGAAGATGGGG+TGG | - | Chr8:88329943-88329962 | None:intergenic | 45.0% | |
| CTCGAGTTCTTGGATTTGTC+TGG | + | Chr8:88329703-88329722 | MsG0880047584.01.T01:CDS | 45.0% | |
| CTTCAAAGCTCAGTCGAGAT+AGG | - | Chr8:88328299-88328318 | None:intergenic | 45.0% | |
| GCTTCAGAATCTCCATCTTG+CGG | - | Chr8:88329580-88329599 | None:intergenic | 45.0% | |
| GGTCTGTCTTTCACACTGAA+AGG | + | Chr8:88329818-88329837 | MsG0880047584.01.T01:CDS | 45.0% | |
| GTCGAGATAGGATGTTGATG+AGG | - | Chr8:88328287-88328306 | None:intergenic | 45.0% | |
| TCAGTGTGAAAGACAGACCT+TGG | - | Chr8:88329817-88329836 | None:intergenic | 45.0% | |
| TTGATCCATCCCAACACGTA+GGG | + | Chr8:88329524-88329543 | MsG0880047584.01.T01:CDS | 45.0% | |
| ! | AGCAGTGTCGAATACGAATC+TGG | - | Chr8:88328521-88328540 | None:intergenic | 45.0% |
| ! | GCAGTGTCGAATACGAATCT+GGG | - | Chr8:88328520-88328539 | None:intergenic | 45.0% |
| ! | TCGAGTGGTTTGTCGAAGTA+AGG | - | Chr8:88328411-88328430 | None:intergenic | 45.0% |
| !! | AGCTTTGAAGATCAATGGCG+CGG | + | Chr8:88328309-88328328 | MsG0880047584.01.T01:CDS | 45.0% |
| !! | CATGAGTCATTGGTGCTGAT+TGG | + | Chr8:88329451-88329470 | MsG0880047584.01.T01:CDS | 45.0% |
| AAGAAGAAAGCGAAGCCGAG+TGG | + | Chr8:88328241-88328260 | MsG0880047584.01.T01:CDS | 50.0% | |
| ACAATCCCTACGTGTTGGGA+TGG | - | Chr8:88329532-88329551 | None:intergenic | 50.0% | |
| AGAAGAAAGCGAAGCCGAGT+GGG | + | Chr8:88328242-88328261 | MsG0880047584.01.T01:CDS | 50.0% | |
| CAGGAACAATCCCTACGTGT+TGG | - | Chr8:88329537-88329556 | None:intergenic | 50.0% | |
| CTTGATCCATCCCAACACGT+AGG | + | Chr8:88329523-88329542 | MsG0880047584.01.T01:CDS | 50.0% | |
| GAGACTGCTTGGGAGAACTT+AGG | - | Chr8:88329135-88329154 | None:intergenic | 50.0% | |
| GAGGCCTTTCGCTGTAAACT+TGG | - | Chr8:88329656-88329675 | None:intergenic | 50.0% | |
| GTAGAAAGAAGATGGGGTGG+TGG | - | Chr8:88329940-88329959 | None:intergenic | 50.0% | |
| GTCGAATACGAATCTGGGTG+AGG | - | Chr8:88328515-88328534 | None:intergenic | 50.0% | |
| GTGTCCTAACCTCGAGTTCT+TGG | + | Chr8:88329693-88329712 | MsG0880047584.01.T01:CDS | 50.0% | |
| !! | GGACGGAGGGAGTATTACAA+GGG | + | Chr8:88328174-88328193 | MsG0880047584.01.T01:five_prime_UTR | 50.0% |
| AACCACTCGAATCACCTCGC+TGG | + | Chr8:88328421-88328440 | MsG0880047584.01.T01:CDS | 55.0% | |
| CTCTCGCTCTTGTTGCCCAA+AGG | + | Chr8:88328550-88328569 | MsG0880047584.01.T01:CDS | 55.0% | |
| GAAGAAAGCGAAGCCGAGTG+GGG | + | Chr8:88328243-88328262 | MsG0880047584.01.T01:CDS | 55.0% | |
| !! | GGGACGGAGGGAGTATTACA+AGG | + | Chr8:88328173-88328192 | MsG0880047584.01.T01:five_prime_UTR | 55.0% |
| AATTGGAGGGTCCACCAGCG+AGG | - | Chr8:88328438-88328457 | None:intergenic | 60.0% | |
| ACGAGTCAACTCGCCCCACT+CGG | - | Chr8:88328259-88328278 | None:intergenic | 60.0% | |
| CACCAGCGAGGTGATTCGAG+TGG | - | Chr8:88328426-88328445 | None:intergenic | 60.0% | |
| CACTCGAATCACCTCGCTGG+TGG | + | Chr8:88328424-88328443 | MsG0880047584.01.T01:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 88328173 | 88330158 | 88328173 | ID=MsG0880047584.01;Name=MsG0880047584.01 |
| Chr8 | mRNA | 88328173 | 88330158 | 88328173 | ID=MsG0880047584.01.T01;Parent=MsG0880047584.01;Name=MsG0880047584.01.T01;_AED=0.44;_eAED=0.44;_QI=64|1|1|1|1|1|2|261|302 |
| Chr8 | exon | 88328173 | 88328571 | 88328173 | ID=MsG0880047584.01.T01:exon:21614;Parent=MsG0880047584.01.T01 |
| Chr8 | exon | 88329324 | 88330158 | 88329324 | ID=MsG0880047584.01.T01:exon:21615;Parent=MsG0880047584.01.T01 |
| Chr8 | five_prime_UTR | 88328173 | 88328236 | 88328173 | ID=MsG0880047584.01.T01:five_prime_utr;Parent=MsG0880047584.01.T01 |
| Chr8 | CDS | 88328237 | 88328571 | 88328237 | ID=MsG0880047584.01.T01:cds;Parent=MsG0880047584.01.T01 |
| Chr8 | CDS | 88329324 | 88329897 | 88329324 | ID=MsG0880047584.01.T01:cds;Parent=MsG0880047584.01.T01 |
| Chr8 | three_prime_UTR | 88329898 | 88330158 | 88329898 | ID=MsG0880047584.01.T01:three_prime_utr;Parent=MsG0880047584.01.T01 |
| Gene Sequence |
| Protein sequence |
