AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880047693.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880047693.01.T01 MTR_4g132850 99.603 252 1 0 68 319 1 252 0.0 505
MsG0880047693.01.T01 MTR_3g068070 33.333 246 159 4 74 315 15 259 2.25e-35 129
MsG0880047693.01.T01 MTR_3g068065 32.530 249 163 4 74 318 17 264 2.46e-34 127
MsG0880047693.01.T01 MTR_3g068175 35.366 246 154 4 74 315 17 261 9.86e-34 125
MsG0880047693.01.T01 MTR_7g063270 33.730 252 157 6 74 317 16 265 5.40e-33 123
MsG0880047693.01.T01 MTR_3g068085 31.707 246 163 4 74 315 15 259 1.20e-32 122
MsG0880047693.01.T01 MTR_4g064887 32.114 246 162 4 74 315 15 259 4.00e-32 120
MsG0880047693.01.T01 MTR_3g068175 34.800 250 154 5 74 315 17 265 1.59e-31 119
MsG0880047693.01.T01 MTR_4g064883 32.932 249 156 5 74 315 14 258 1.98e-31 119
MsG0880047693.01.T01 MTR_7g063260 33.730 252 158 6 74 317 16 266 1.29e-30 116
MsG0880047693.01.T01 MTR_3g068155 31.967 244 161 4 76 315 21 263 1.10e-29 114
MsG0880047693.01.T01 MTR_7g063320 31.200 250 163 5 74 315 15 263 6.60e-28 109
MsG0880047693.01.T01 MTR_7g063330 32.271 251 162 5 74 317 15 264 2.92e-27 107
MsG0880047693.01.T01 MTR_6g023610 32.271 251 157 6 73 313 12 259 8.03e-27 106
MsG0880047693.01.T01 MTR_1g082760 27.941 272 182 6 54 314 20 288 9.14e-27 107
MsG0880047693.01.T01 MTR_7g107670 28.846 260 166 7 72 317 31 285 4.07e-26 105
MsG0880047693.01.T01 MTR_6g023590 31.461 267 164 7 62 315 1 261 5.56e-26 104
MsG0880047693.01.T01 MTR_6g023990 31.641 256 158 6 73 316 13 263 6.10e-26 104
MsG0880047693.01.T01 MTR_7g071680 31.502 273 158 9 71 317 26 295 7.59e-26 104
MsG0880047693.01.T01 MTR_7g113650 26.866 268 182 6 58 314 24 288 8.68e-26 104
MsG0880047693.01.T01 MTR_1196s0010 31.923 260 155 7 65 314 265 512 2.23e-25 106
MsG0880047693.01.T01 MTR_6g023910 31.076 251 160 6 73 313 12 259 6.56e-25 101
MsG0880047693.01.T01 MTR_6g023600 32.836 268 159 8 62 315 1 261 1.11e-24 100
MsG0880047693.01.T01 MTR_7g063360 32.400 250 160 5 74 315 16 264 1.42e-24 100
MsG0880047693.01.T01 MTR_7g063390 31.200 250 163 5 74 315 16 264 1.57e-24 100
MsG0880047693.01.T01 MTR_3g085740 31.128 257 159 8 69 315 70 318 3.25e-24 100
MsG0880047693.01.T01 MTR_4g078630 30.916 262 161 7 71 317 16 272 5.05e-24 99.8
MsG0880047693.01.T01 MTR_7g105460 31.250 256 161 7 70 315 9 259 8.36e-24 98.6
MsG0880047693.01.T01 MTR_7g083870 30.385 260 163 9 72 317 33 288 1.54e-23 98.6
MsG0880047693.01.T01 MTR_3g020670 34.340 265 144 10 72 315 14 269 4.14e-23 97.1
MsG0880047693.01.T01 MTR_6g023950 30.682 264 170 7 62 315 1 261 1.47e-22 95.1
MsG0880047693.01.T01 MTR_7g063270 30.000 250 120 6 74 317 16 216 1.51e-22 94.0
MsG0880047693.01.T01 MTR_3g099950 82.692 52 9 0 15 66 15 66 4.13e-22 88.6
MsG0880047693.01.T01 MTR_2g022440 77.193 57 13 0 14 70 4 60 1.52e-21 86.7
MsG0880047693.01.T01 MTR_7g094510 30.120 249 165 7 74 314 6 253 2.04e-21 91.7
MsG0880047693.01.T01 MTR_4g131740 28.897 263 170 8 66 315 32 290 2.60e-21 92.4
MsG0880047693.01.T01 MTR_4g064887 31.606 193 127 4 74 262 15 206 6.03e-21 89.7
MsG0880047693.01.T01 MTR_2g013510 73.770 61 15 1 6 66 53 112 8.91e-21 89.7
MsG0880047693.01.T01 MTR_4g052350 28.458 253 165 7 72 315 12 257 1.51e-20 89.7
MsG0880047693.01.T01 MTR_8g442750 30.469 256 166 4 71 315 11 265 4.51e-20 89.0
MsG0880047693.01.T01 MTR_6g023600 32.090 268 155 9 62 315 1 255 7.97e-20 87.4
MsG0880047693.01.T01 MTR_4g052300 27.490 251 168 6 73 315 7 251 8.14e-20 87.8
MsG0880047693.01.T01 MTR_7g094520 29.762 252 164 9 74 315 11 259 8.44e-20 87.4
MsG0880047693.01.T01 MTR_4g052340 28.185 259 158 10 70 313 10 255 1.17e-19 87.4
MsG0880047693.01.T01 MTR_7g110130 29.921 254 166 6 72 316 4 254 2.23e-19 86.3
MsG0880047693.01.T01 MTR_0376s0040 67.742 62 20 0 5 66 100 161 4.18e-19 83.2
MsG0880047693.01.T01 MTR_2g090165 28.175 252 170 5 72 315 4 252 4.19e-19 85.5
MsG0880047693.01.T01 MTR_7g105590 30.208 192 128 5 70 257 4 193 5.55e-19 83.6
MsG0880047693.01.T01 MTR_4g064883 31.250 192 121 5 74 258 14 201 9.26e-19 83.6
MsG0880047693.01.T01 MTR_7g105580 27.519 258 154 7 70 317 4 238 1.73e-17 80.9
MsG0880047693.01.T01 MTR_4g052320 27.381 252 168 7 73 315 7 252 1.81e-17 81.3
MsG0880047693.01.T01 MTR_5g047230 77.778 45 10 0 22 66 6 50 2.88e-17 74.7
MsG0880047693.01.T01 MTR_6g035395 29.644 253 156 8 70 315 1 238 2.32e-16 77.8
MsG0880047693.01.T01 MTR_7g110140 30.196 255 159 7 73 315 5 252 2.42e-16 77.8
MsG0880047693.01.T01 MTR_0009s0100 74.000 50 13 0 17 66 60 109 3.01e-16 73.9
MsG0880047693.01.T01 MTR_0029s0090 63.793 58 21 0 9 66 5 62 3.12e-16 72.4
MsG0880047693.01.T01 MTR_3g064650 67.273 55 18 0 12 66 112 166 3.83e-16 76.6
MsG0880047693.01.T01 MTR_8g096620 26.667 225 147 4 70 289 41 252 4.10e-16 78.6
MsG0880047693.01.T01 MTR_7g105570 32.418 182 110 6 144 315 38 216 7.95e-16 75.9
MsG0880047693.01.T01 MTR_4g058840 27.652 264 169 9 67 314 4 261 1.27e-15 75.9
MsG0880047693.01.T01 MTR_4g058820 27.652 264 169 9 67 314 4 261 1.27e-15 75.9
MsG0880047693.01.T01 MTR_4g058810 25.000 260 181 7 67 314 4 261 1.94e-14 72.8
MsG0880047693.01.T01 MTR_7g110160 26.984 252 159 6 71 316 3 235 3.13e-14 71.6
MsG0880047693.01.T01 MTR_7g080410 27.723 202 136 6 64 258 31 229 9.09e-14 70.9
MsG0880047693.01.T01 MTR_7g080410 26.733 202 138 5 64 258 31 229 9.50e-14 71.2
MsG0880047693.01.T01 MTR_2g013890 75.000 40 10 0 22 61 1 40 1.61e-13 65.5
MsG0880047693.01.T01 MTR_1g100990 75.556 45 11 0 22 66 47 91 1.67e-13 67.4
MsG0880047693.01.T01 MTR_8g044240 27.979 193 126 6 80 260 75 266 2.05e-13 70.5
MsG0880047693.01.T01 MTR_1g068955 27.509 269 170 8 62 313 1 261 2.27e-13 69.7
MsG0880047693.01.T01 MTR_3g060870 64.583 48 17 0 22 69 16 63 4.71e-13 64.3
MsG0880047693.01.T01 MTR_8g096580 25.532 188 137 3 77 261 48 235 6.59e-13 68.6
MsG0880047693.01.T01 MTR_2g010785 74.359 39 10 0 25 63 2 40 1.12e-12 63.9
MsG0880047693.01.T01 MTR_4g084800 30.075 133 90 2 69 200 8 138 3.06e-12 63.9
MsG0880047693.01.T01 MTR_3g113870 26.776 183 127 5 82 260 29 208 7.12e-12 64.7
MsG0880047693.01.T01 MTR_3g110130 75.610 41 10 0 22 62 101 141 7.38e-12 63.2
MsG0880047693.01.T01 MTR_4g036305 65.217 46 16 0 25 70 2 47 1.89e-11 59.3
MsG0880047693.01.T01 MTR_5g083020 83.871 31 5 0 14 44 33 63 7.55e-11 57.4
MsG0880047693.01.T01 MTR_8g464790 68.293 41 13 0 25 65 12 52 8.16e-11 57.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880047693.01.T01 AT4G05530 73.705 251 66 0 69 319 4 254 7.93e-134 380
MsG0880047693.01.T01 AT5G06060 34.252 254 160 5 68 315 1 253 2.87e-35 129
MsG0880047693.01.T01 AT2G29150 34.538 249 149 8 74 314 16 258 3.00e-32 121
MsG0880047693.01.T01 AT2G29260 33.333 246 159 4 74 315 68 312 5.81e-31 119
MsG0880047693.01.T01 AT2G29360 33.197 244 158 5 76 315 18 260 6.27e-30 115
MsG0880047693.01.T01 AT2G29340 32.258 248 159 5 74 315 7 251 3.91e-29 112
MsG0880047693.01.T01 AT3G26760 29.642 307 182 9 24 315 2 289 5.49e-29 113
MsG0880047693.01.T01 AT2G29340 32.258 248 159 5 74 315 7 251 7.72e-29 113
MsG0880047693.01.T01 AT2G29370 29.811 265 171 6 58 315 4 260 2.82e-27 108
MsG0880047693.01.T01 AT2G29330 31.727 249 159 6 74 315 7 251 1.34e-26 105
MsG0880047693.01.T01 AT2G29290 31.325 249 160 6 74 315 7 251 1.58e-26 105
MsG0880047693.01.T01 AT3G05260 29.921 254 163 7 73 315 36 285 8.65e-25 101
MsG0880047693.01.T01 AT2G29350 32.800 250 148 8 76 314 17 257 1.85e-24 100
MsG0880047693.01.T01 AT1G07440 30.488 246 165 5 74 315 12 255 3.33e-24 99.8
MsG0880047693.01.T01 AT2G30670 30.952 252 157 7 74 315 7 251 6.12e-24 99.0
MsG0880047693.01.T01 AT2G47130 33.068 251 154 6 73 314 5 250 7.02e-24 98.6
MsG0880047693.01.T01 AT2G29300 29.762 252 161 7 74 315 7 252 8.64e-24 98.6
MsG0880047693.01.T01 AT2G29300 29.762 252 161 7 74 315 7 252 8.77e-24 99.0
MsG0880047693.01.T01 AT1G54870 27.668 253 169 5 73 314 81 330 3.28e-23 98.2
MsG0880047693.01.T01 AT1G54870 27.668 253 169 5 73 314 83 332 3.31e-23 98.2
MsG0880047693.01.T01 AT3G04000 28.723 282 163 8 54 314 5 269 1.03e-22 95.9
MsG0880047693.01.T01 AT1G07450 30.078 256 166 7 68 315 1 251 1.08e-22 95.5
MsG0880047693.01.T01 AT3G26770 29.389 262 159 9 72 315 39 292 1.14e-22 96.3
MsG0880047693.01.T01 AT2G47120 30.682 264 154 10 73 318 6 258 1.18e-22 95.5
MsG0880047693.01.T01 AT2G47120 30.682 264 154 10 73 318 5 257 1.23e-22 95.1
MsG0880047693.01.T01 AT4G13180 30.682 264 170 7 62 315 1 261 1.51e-22 95.1
MsG0880047693.01.T01 AT2G29320 30.159 252 160 7 74 315 13 258 1.98e-22 95.1
MsG0880047693.01.T01 AT5G18210 32.143 252 157 8 76 315 10 259 5.55e-22 93.6
MsG0880047693.01.T01 AT3G51680 30.037 273 160 8 71 317 29 296 1.58e-21 93.2
MsG0880047693.01.T01 AT2G29290 30.303 231 150 6 92 315 8 234 1.79e-21 91.7
MsG0880047693.01.T01 AT1G24360 27.698 278 183 8 48 315 48 317 2.49e-21 92.8
MsG0880047693.01.T01 AT3G47350 29.048 210 133 5 76 271 46 253 3.52e-21 92.4
MsG0880047693.01.T01 AT3G47350 29.048 210 133 5 76 271 46 253 4.13e-21 92.4
MsG0880047693.01.T01 AT3G29260 31.102 254 157 7 72 314 4 250 6.69e-21 90.5
MsG0880047693.01.T01 AT2G47140 30.620 258 154 7 72 314 4 251 8.57e-21 90.1
MsG0880047693.01.T01 AT3G29250 32.157 255 156 9 73 316 41 289 9.13e-21 90.9
MsG0880047693.01.T01 AT3G29250 32.946 258 150 11 73 316 5 253 9.69e-21 90.1
MsG0880047693.01.T01 AT3G29250 31.321 265 165 9 63 316 33 291 1.01e-20 90.9
MsG0880047693.01.T01 AT3G03980 28.986 276 169 8 54 314 5 268 1.70e-20 89.7
MsG0880047693.01.T01 AT2G29310 28.916 249 166 5 74 315 7 251 2.07e-20 89.4
MsG0880047693.01.T01 AT3G42960 31.179 263 160 8 71 317 5 262 2.73e-20 89.0
MsG0880047693.01.T01 AT4G03140 26.357 258 175 7 72 317 76 330 1.04e-19 88.6
MsG0880047693.01.T01 AT3G12800 30.268 261 161 7 71 315 7 262 1.95e-19 87.0
MsG0880047693.01.T01 AT1G63380 29.720 286 168 11 49 314 1 273 2.01e-19 87.0
MsG0880047693.01.T01 AT1G63380 30.534 262 153 10 73 314 14 266 2.21e-19 86.7
MsG0880047693.01.T01 AT1G63380 30.534 262 153 10 73 314 18 270 2.24e-19 86.7
MsG0880047693.01.T01 AT1G63380 30.534 262 153 10 73 314 16 268 2.26e-19 86.7
MsG0880047693.01.T01 AT2G29350 32.301 226 133 8 100 314 3 219 8.54e-19 84.0
MsG0880047693.01.T01 AT1G52340 28.625 269 157 8 72 315 16 274 1.42e-18 84.7
MsG0880047693.01.T01 AT3G47360 29.474 190 128 4 77 262 48 235 2.61e-18 84.3
MsG0880047693.01.T01 AT1G62610 30.303 264 151 10 73 314 13 265 3.41e-18 83.6
MsG0880047693.01.T01 AT1G62610 30.303 264 151 10 73 314 12 264 3.53e-18 83.2
MsG0880047693.01.T01 AT1G62610 30.303 264 151 10 73 314 14 266 3.74e-18 83.2
MsG0880047693.01.T01 AT1G62610 30.303 264 151 10 73 314 18 270 3.92e-18 83.2
MsG0880047693.01.T01 AT5G18210 32.203 236 146 8 76 299 10 243 4.19e-18 83.2
MsG0880047693.01.T01 AT2G29320 29.237 236 151 7 90 315 11 240 1.73e-17 80.9
MsG0880047693.01.T01 AT2G29340 31.414 191 122 5 74 258 7 194 2.64e-17 79.3
MsG0880047693.01.T01 AT2G29340 31.414 191 122 5 74 258 7 194 2.64e-17 79.3
MsG0880047693.01.T01 AT3G55290 28.736 261 158 10 73 314 16 267 2.83e-17 80.9
MsG0880047693.01.T01 AT3G55290 28.736 261 158 10 73 314 17 268 3.04e-17 80.9
MsG0880047693.01.T01 AT3G46170 29.119 261 157 10 73 314 25 276 1.41e-16 79.0
MsG0880047693.01.T01 AT2G17845 26.923 260 167 9 73 314 46 300 2.64e-16 78.6
MsG0880047693.01.T01 AT5G50600 25.701 214 142 6 59 260 25 233 3.96e-16 78.6
MsG0880047693.01.T01 AT5G50700 25.701 214 142 6 59 260 25 233 3.96e-16 78.6
MsG0880047693.01.T01 AT3G55310 27.969 261 160 10 73 314 16 267 1.16e-15 76.3
MsG0880047693.01.T01 AT2G29310 27.897 233 157 5 90 315 21 249 1.49e-15 75.5
MsG0880047693.01.T01 AT2G29350 31.579 190 119 6 76 258 17 202 1.93e-15 74.7
MsG0880047693.01.T01 AT5G50690 27.513 189 131 4 72 256 43 229 1.03e-14 73.2
MsG0880047693.01.T01 AT5G50590 27.513 189 131 4 72 256 43 229 1.03e-14 73.2
MsG0880047693.01.T01 AT5G50690 27.513 189 131 4 72 256 43 229 1.49e-14 73.2
MsG0880047693.01.T01 AT5G50590 27.513 189 131 4 72 256 43 229 1.49e-14 73.2
MsG0880047693.01.T01 AT5G04900 28.272 191 127 4 80 260 83 273 2.41e-13 70.1
MsG0880047693.01.T01 AT3G03330 28.646 192 129 5 75 258 42 233 2.70e-13 70.1
MsG0880047693.01.T01 AT4G10020 23.810 189 138 3 72 256 45 231 8.06e-12 65.9
MsG0880047693.01.T01 AT5G50770 26.699 206 147 3 76 277 47 252 2.39e-11 64.3

Find 101 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAATTTCGCCATTACATTT+TGG 0.160200 8:+89677432 None:intergenic
CCAAAATGTAATGGCGAAAT+TGG 0.222003 8:-89677432 MsG0880047693.01.T01:three_prime_UTR
ACCTTTCCTTTGAATCTCTT+TGG 0.229084 8:+89679365 None:intergenic
TTTGGCTTGTTACAGAAGTA+TGG 0.300714 8:-89678582 MsG0880047693.01.T01:intron
TAATGGCCTAAAATCGTATT+TGG 0.304401 8:-89680382 MsG0880047693.01.T01:CDS
GAAGAACCCTTCGGCAAGTA+TGG 0.332535 8:+89678226 None:intergenic
AAGGCCAAGAAGGGCTGTTT+TGG 0.335058 8:+89678138 None:intergenic
GCTCCTTCCAAGGACGTATT+CGG 0.345427 8:-89680326 MsG0880047693.01.T01:CDS
ATTCGGTCCTTGACAAGTTA+TGG 0.346257 8:-89678491 MsG0880047693.01.T01:CDS
AGCATACTAGAAGATGAAAA+TGG 0.360632 8:+89677470 None:intergenic
CTCCTTCCAAGGACGTATTC+GGG 0.362710 8:-89680325 MsG0880047693.01.T01:CDS
GTAACCAAAACAGCCCTTCT+TGG 0.370781 8:-89678142 MsG0880047693.01.T01:CDS
CGCTGTAGTTATGAAATGAT+AGG 0.372713 8:-89677347 MsG0880047693.01.T01:three_prime_UTR
ACTTGTCAAGGACCGAATCT+TGG 0.376699 8:+89678496 None:intergenic
ATCTTCTAGTATGCTTCCGT+TGG 0.377400 8:-89677462 MsG0880047693.01.T01:three_prime_UTR
CTTGAAGCAAAGACATTACT+TGG 0.379309 8:-89677614 MsG0880047693.01.T01:CDS
TTATCACCCACCAGCTAGTA+TGG 0.380678 8:-89678176 MsG0880047693.01.T01:CDS
ACTCACCATAGCAGAATTAC+TGG 0.391347 8:+89677920 None:intergenic
TGCAAATACATCAATTCCTT+TGG 0.391428 8:+89679030 None:intergenic
GGAGAAACTATAGTAGTTTC+CGG 0.394523 8:-89677518 MsG0880047693.01.T01:CDS
TTCGGTCCTTGACAAGTTAT+GGG 0.394972 8:-89678490 MsG0880047693.01.T01:CDS
ACTGCTTCAACACAGGGAAT+TGG 0.396053 8:-89679332 MsG0880047693.01.T01:CDS
CATTGCTGAGAGACTTGGTT+TGG 0.401132 8:-89679303 MsG0880047693.01.T01:CDS
GATGATGCGTCATATATAAC+AGG 0.401523 8:-89677539 MsG0880047693.01.T01:CDS
GAATACCGGGTTCGATTCCC+AGG 0.404025 8:-89680302 MsG0880047693.01.T01:CDS
TAGGGGCCATCTCAGCAGCC+AGG 0.410588 8:+89678003 None:intergenic
CGAATCTTGGGTTTGCAGAA+TGG 0.413839 8:+89678509 None:intergenic
CTTGTCAAGGACCGAATCTT+GGG 0.415114 8:+89678497 None:intergenic
AGGACGTATTCGGGGAATAC+CGG 0.416021 8:-89680316 MsG0880047693.01.T01:CDS
ATGCATAGAGGCATGCGCAC+TGG 0.420291 8:+89680264 None:intergenic
ACCTTTGATGTATCGGAAAC+CGG 0.426729 8:-89680223 MsG0880047693.01.T01:intron
ATTTGGTCAACCAAGTTGCT+TGG 0.426908 8:-89680365 MsG0880047693.01.T01:CDS
GTAGGCCCTGGCTGCTGAGA+TGG 0.440474 8:-89678009 MsG0880047693.01.T01:intron
TTTGGTCAACCAAGTTGCTT+GGG 0.441180 8:-89680364 MsG0880047693.01.T01:CDS
AGAAGGATTTGCAGCAGCAT+TGG 0.451910 8:+89678539 None:intergenic
TGTTATCTCTTCTCGCAGAC+AGG 0.457846 8:-89679267 MsG0880047693.01.T01:intron
GATCGTGACTGCTTCAACAC+AGG 0.459705 8:-89679339 MsG0880047693.01.T01:CDS
CCAGCTAGTATGGCTATGTA+TGG 0.467840 8:-89678166 MsG0880047693.01.T01:CDS
GTCGTCCACCTTTGATGTAT+CGG 0.468216 8:-89680230 MsG0880047693.01.T01:CDS
GCTGTAGTTATGAAATGATA+GGG 0.469812 8:-89677346 MsG0880047693.01.T01:three_prime_UTR
TTTACCATTGCTGAGAGACT+TGG 0.472945 8:-89679308 MsG0880047693.01.T01:CDS
TGGAAGGAGCTCCATGCCAC+TGG 0.473837 8:+89680339 None:intergenic
TACCTTCAGAAGAAGTATAG+TGG 0.476458 8:+89678452 None:intergenic
CGTGTAAACTGTGTTGCTCC+TGG 0.479482 8:-89677975 MsG0880047693.01.T01:CDS
CATTCTGCAAACCCAAGATT+CGG 0.481732 8:-89678508 MsG0880047693.01.T01:CDS
TGTAGCAGCACCCATGTCTT+CGG 0.486116 8:+89677577 None:intergenic
TCAAAGGTGGACGACTAATC+CGG 0.492017 8:+89680238 None:intergenic
GGACGTATTCGGGGAATACC+GGG 0.498004 8:-89680315 MsG0880047693.01.T01:CDS
AGGGGCCATCTCAGCAGCCA+GGG 0.499508 8:+89678004 None:intergenic
GTTATCATTTCATCGATCGC+TGG 0.504376 8:-89678199 MsG0880047693.01.T01:CDS
CGACTTTGGTAAGGCCAAGA+AGG 0.505337 8:+89678128 None:intergenic
ATGAATGAAGCAAAATTAGT+TGG 0.506154 8:+89677945 None:intergenic
TTGCTTGGGCTCCAGTGGCA+TGG 0.506314 8:-89680350 MsG0880047693.01.T01:CDS
CTCAAATGCTCTACAAAGGA+AGG 0.512057 8:-89678993 MsG0880047693.01.T01:CDS
GAAATTCCAAAGAGATTCAA+AGG 0.522716 8:-89679371 MsG0880047693.01.T01:CDS
CCAAGTTGCTTGGGCTCCAG+TGG 0.526782 8:-89680355 MsG0880047693.01.T01:CDS
ATGTGTGGTGTAGATCCTAA+TGG 0.527543 8:-89680399 MsG0880047693.01.T01:CDS
CCACTGGAGCCCAAGCAACT+TGG 0.527748 8:+89680355 None:intergenic
ACTTGGTACAACCGAAGACA+TGG 0.533738 8:-89677588 MsG0880047693.01.T01:CDS
GTATTCCCCGAATACGTCCT+TGG 0.539101 8:+89680319 None:intergenic
TCTTCTAGTATGCTTCCGTT+GGG 0.539298 8:-89677461 MsG0880047693.01.T01:three_prime_UTR
TAAGAATAATAGCATTGAGC+TGG 0.540343 8:-89677374 MsG0880047693.01.T01:three_prime_UTR
AAGACATTACTTGGAAGACT+TGG 0.543455 8:-89677605 MsG0880047693.01.T01:CDS
TTTGATTGACAAAACTGTCC+AGG 0.545328 8:-89678969 MsG0880047693.01.T01:intron
TTTGTAGAGCATTTGAGACA+TGG 0.550170 8:+89678999 None:intergenic
TCCAAAGAGATTCAAAGGAA+AGG 0.550796 8:-89679366 MsG0880047693.01.T01:CDS
GGCAAGTACCGACTTTGGTA+AGG 0.550957 8:+89678119 None:intergenic
CATCACCAGTAATTCTGCTA+TGG 0.551246 8:-89677925 MsG0880047693.01.T01:intron
GACTTTGGTAAGGCCAAGAA+GGG 0.555272 8:+89678129 None:intergenic
GGGTCTAGTCCAAAATGTAA+TGG 0.560206 8:-89677441 MsG0880047693.01.T01:three_prime_UTR
GCATGCCTCTATGCATGAGC+CGG 0.564746 8:-89680257 MsG0880047693.01.T01:CDS
GCTGAGAGACTTGGTTTGGA+AGG 0.565863 8:-89679299 MsG0880047693.01.T01:CDS
TTATCTCCCATAACTTGTCA+AGG 0.576972 8:+89678484 None:intergenic
TGCAGAATGGAATCAACAGA+AGG 0.579952 8:+89678522 None:intergenic
TCCCCGAATACGTCCTTGGA+AGG 0.579999 8:+89680323 None:intergenic
GTGGCATGGAGCTCCTTCCA+AGG 0.583021 8:-89680336 MsG0880047693.01.T01:CDS
CCATACATAGCCATACTAGC+TGG 0.584897 8:+89678166 None:intergenic
CTAATCCGGCTCATGCATAG+AGG 0.586503 8:+89680252 None:intergenic
TGCAGCTCCATACTTGCCGA+AGG 0.587100 8:-89678233 MsG0880047693.01.T01:CDS
AATACCGGGTTCGATTCCCA+GGG 0.588943 8:-89680301 MsG0880047693.01.T01:CDS
ACCGGTTTCCGATACATCAA+AGG 0.589743 8:+89680222 None:intergenic
ATCGTGACTGCTTCAACACA+GGG 0.594859 8:-89679338 MsG0880047693.01.T01:CDS
AGCCACTATACTTCTTCTGA+AGG 0.599186 8:-89678454 MsG0880047693.01.T01:intron
TACATAGCCATACTAGCTGG+TGG 0.601638 8:+89678169 None:intergenic
CAGTCTCGATGGCATTCCGC+CGG 0.603575 8:+89677499 None:intergenic
AAATTAGTTGGTACAAAACC+AGG 0.611900 8:+89677957 None:intergenic
ATAACAACAGAAGAACCCTT+CGG 0.615477 8:+89678217 None:intergenic
CAAACCAAGTCTCTCAGCAA+TGG 0.620172 8:+89679304 None:intergenic
AATGGAAGCTACAGTCTCGA+TGG 0.627135 8:+89677488 None:intergenic
CTGTAGTTATGAAATGATAG+GGG 0.627927 8:-89677345 MsG0880047693.01.T01:three_prime_UTR
ATGTCTCAAATGCTCTACAA+AGG 0.639990 8:-89678997 MsG0880047693.01.T01:CDS
ACATAGCCATACTAGCTGGT+GGG 0.645983 8:+89678170 None:intergenic
TCCTTCCAAGGACGTATTCG+GGG 0.651851 8:-89680324 MsG0880047693.01.T01:CDS
GGTTTCCGATACATCAAAGG+TGG 0.664017 8:+89680225 None:intergenic
TTAGGATCTACACCACACAT+AGG 0.665864 8:+89680402 None:intergenic
GCAGCTCCATACTTGCCGAA+GGG 0.672297 8:-89678232 MsG0880047693.01.T01:CDS
CTTGGTACAACCGAAGACAT+GGG 0.677968 8:-89677587 MsG0880047693.01.T01:CDS
TACCGGGTTCGATTCCCAGG+GGG 0.708233 8:-89680299 MsG0880047693.01.T01:CDS
ATACCGGGTTCGATTCCCAG+GGG 0.724847 8:-89680300 MsG0880047693.01.T01:CDS
TAAGAACCGAGACCTATGTG+TGG 0.728842 8:-89680414 None:intergenic
GAAACTATAGTAGTTTCCGG+CGG 0.735826 8:-89677515 MsG0880047693.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATATAT+TGG + Chr8:89679244-89679225 None:intergenic 0.0%
!! AAAAAAAAAAAAATCGTATT+TGG - Chr8:89677416-89677435 MsG0880047693.01.T01:three_prime_UTR 10.0%
!! ACCAAATTAAAAAAATAATA+TGG + Chr8:89678508-89678527 None:intergenic 10.0%
!!! AATACGATTTTTTTTTTTTT+TGG + Chr8:89677416-89677435 None:intergenic 10.0%
!!! GAATTTTTTTTTTTTTTTGA+AGG + Chr8:89677579-89677598 None:intergenic 10.0%
!!! TCCATATTATTTTTTTAATT+TGG - Chr8:89678504-89678523 MsG0880047693.01.T01:CDS 10.0%
!! AATTCATTCCTAAAAAAATT+TGG + Chr8:89677697-89677716 None:intergenic 15.0%
!! ATTATGTAAATATAATGTGT+AGG - Chr8:89679578-89679597 MsG0880047693.01.T01:intron 15.0%
!! ATTCATTCCTAAAAAAATTT+GGG + Chr8:89677696-89677715 None:intergenic 15.0%
!!! AATATGTGTTTGAATTTTTT+TGG - Chr8:89679005-89679024 MsG0880047693.01.T01:CDS 15.0%
!!! ATATGATTAATTACCTTTTT+TGG - Chr8:89677845-89677864 MsG0880047693.01.T01:intron 15.0%
!!! ATCTAAATATTTTTCATTTG+TGG + Chr8:89677455-89677474 None:intergenic 15.0%
!!! TATTTTTAGACATATCATTA+TGG + Chr8:89678073-89678092 None:intergenic 15.0%
!!! TTTTATTTAGAAAATGATCA+AGG - Chr8:89677892-89677911 MsG0880047693.01.T01:intron 15.0%
!! AAAAACAGTAACAATTCATA+TGG + Chr8:89679534-89679553 None:intergenic 20.0%
!! GAATGAATCAAATAAGAAAA+AGG + Chr8:89678371-89678390 None:intergenic 20.0%
!! GTAAATTATTGTATGAGAAT+TGG - Chr8:89678419-89678438 MsG0880047693.01.T01:intron 20.0%
!! TATAATTCTTGATCCAAAAA+AGG + Chr8:89677861-89677880 None:intergenic 20.0%
!! TGTACAAGTTTAAATAGAAT+TGG - Chr8:89678877-89678896 MsG0880047693.01.T01:intron 20.0%
!! TTGTACAAAATATGAATGAT+GGG + Chr8:89678864-89678883 None:intergenic 20.0%
!!! ATGTTTTGTCATTATGATTT+TGG - Chr8:89678908-89678927 MsG0880047693.01.T01:intron 20.0%
!!! ATTTATCTGAAATAGAATGA+CGG - Chr8:89677666-89677685 MsG0880047693.01.T01:intron 20.0%
! ACAAGTTTAAATAGAATTGG+CGG - Chr8:89678880-89678899 MsG0880047693.01.T01:intron 25.0%
! AGGACCAAATGAAAAATATT+TGG + Chr8:89677559-89677578 None:intergenic 25.0%
! ATATATCATTTGTGTCTGAA+TGG - Chr8:89679936-89679955 MsG0880047693.01.T01:intron 25.0%
! ATGAATGAAGCAAAATTAGT+TGG + Chr8:89679663-89679682 None:intergenic 25.0%
! ATTTCTTTAGCATAAAGACA+AGG + Chr8:89677634-89677653 None:intergenic 25.0%
! CATATAGGATAGTTGTAAAA+TGG + Chr8:89678764-89678783 None:intergenic 25.0%
! CTTGTACAAAATATGAATGA+TGG + Chr8:89678865-89678884 None:intergenic 25.0%
! TAAGACATCAAATCTCATAT+AGG + Chr8:89678779-89678798 None:intergenic 25.0%
!! GAGTATCTTTTTAACCAAAT+AGG - Chr8:89679704-89679723 MsG0880047693.01.T01:intron 25.0%
!! GCTTCCAAATATTTTTCATT+TGG - Chr8:89677552-89677571 MsG0880047693.01.T01:CDS 25.0%
AGCATACTAGAAGATGAAAA+TGG + Chr8:89680138-89680157 None:intergenic 30.0%
AGGTAATTAAGCTGTGAAAA+TGG - Chr8:89679171-89679190 MsG0880047693.01.T01:intron 30.0%
ATATTGAAGGAACAATTGGA+AGG + Chr8:89679510-89679529 None:intergenic 30.0%
CAATTCATATGGCATATTGA+AGG + Chr8:89679523-89679542 None:intergenic 30.0%
CTGTAGTTATGAAATGATAG+GGG - Chr8:89680260-89680279 MsG0880047693.01.T01:CDS 30.0%
GAAATTCCAAAGAGATTCAA+AGG - Chr8:89678234-89678253 MsG0880047693.01.T01:CDS 30.0%
GCTGTAGTTATGAAATGATA+GGG - Chr8:89680259-89680278 MsG0880047693.01.T01:CDS 30.0%
GTCCTTAACATATGTTTCAA+CGG - Chr8:89678016-89678035 MsG0880047693.01.T01:intron 30.0%
TAATGGCCTAAAATCGTATT+TGG - Chr8:89677223-89677242 MsG0880047693.01.T01:three_prime_UTR 30.0%
TGCAAATACATCAATTCCTT+TGG + Chr8:89678578-89678597 None:intergenic 30.0%
TGTCTTTCTCACTATTTGAA+TGG - Chr8:89678976-89678995 MsG0880047693.01.T01:CDS 30.0%
! AAATACGATTTTAGGCCATT+AGG + Chr8:89677224-89677243 None:intergenic 30.0%
! AAATTAGTTGGTACAAAACC+AGG + Chr8:89679651-89679670 None:intergenic 30.0%
! AGTGTGTTGATGTAGTAAAA+TGG - Chr8:89679327-89679346 MsG0880047693.01.T01:CDS 30.0%
! CACAAGTCTTGTATTGAAAT+TGG + Chr8:89678697-89678716 None:intergenic 30.0%
! TAAGAATAATAGCATTGAGC+TGG - Chr8:89680231-89680250 MsG0880047693.01.T01:CDS 30.0%
!!! ATAGGGGATTTTGCTTTTTA+AGG - Chr8:89680276-89680295 MsG0880047693.01.T01:CDS 30.0%
!!! TAGGGGATTTTGCTTTTTAA+GGG - Chr8:89680277-89680296 MsG0880047693.01.T01:CDS 30.0%
!!! TGTCATTATGATTTTGGCTT+TGG - Chr8:89678914-89678933 MsG0880047693.01.T01:intron 30.0%
AAGACATTACTTGGAAGACT+TGG - Chr8:89680000-89680019 MsG0880047693.01.T01:intron 35.0%
ACCTTTCCTTTGAATCTCTT+TGG + Chr8:89678243-89678262 None:intergenic 35.0%
ACTACACAAAGATGGAAGAA+AGG + Chr8:89679310-89679329 None:intergenic 35.0%
ATAACAACAGAAGAACCCTT+CGG + Chr8:89679391-89679410 None:intergenic 35.0%
ATCAACACACTACACAAAGA+TGG + Chr8:89679318-89679337 None:intergenic 35.0%
ATGTCTCAAATGCTCTACAA+AGG - Chr8:89678608-89678627 MsG0880047693.01.T01:intron 35.0%
CATTATCTTTGTCTACGTGT+TGG - Chr8:89679883-89679902 MsG0880047693.01.T01:intron 35.0%
CCAAAATGTAATGGCGAAAT+TGG - Chr8:89680173-89680192 MsG0880047693.01.T01:intron 35.0%
CGCTGTAGTTATGAAATGAT+AGG - Chr8:89680258-89680277 MsG0880047693.01.T01:CDS 35.0%
CTACACAAAGATGGAAGAAA+GGG + Chr8:89679309-89679328 None:intergenic 35.0%
CTGGACAGTATGTATGTTAT+TGG - Chr8:89678828-89678847 MsG0880047693.01.T01:intron 35.0%
CTTGAAGCAAAGACATTACT+TGG - Chr8:89679991-89680010 MsG0880047693.01.T01:intron 35.0%
GATGATGCGTCATATATAAC+AGG - Chr8:89680066-89680085 MsG0880047693.01.T01:intron 35.0%
GGAAAGAGGAAAAACCTATT+TGG + Chr8:89679721-89679740 None:intergenic 35.0%
GGAGAAACTATAGTAGTTTC+CGG - Chr8:89680087-89680106 MsG0880047693.01.T01:intron 35.0%
GGTGTCTGATAATTATACAC+AGG - Chr8:89679348-89679367 MsG0880047693.01.T01:CDS 35.0%
TAAATATAATGTGTAGGCCC+TGG - Chr8:89679584-89679603 MsG0880047693.01.T01:intron 35.0%
TAGCAAATGATACACAACAC+AGG + Chr8:89679752-89679771 None:intergenic 35.0%
TCCAAAGAGATTCAAAGGAA+AGG - Chr8:89678239-89678258 MsG0880047693.01.T01:intron 35.0%
TGAGATTTGATGTCTTATCC+AGG - Chr8:89678782-89678801 MsG0880047693.01.T01:intron 35.0%
TGCCGTTGAAACATATGTTA+AGG + Chr8:89678021-89678040 None:intergenic 35.0%
TGGCATATTGAAGGAACAAT+TGG + Chr8:89679514-89679533 None:intergenic 35.0%
TTTGATTGACAAAACTGTCC+AGG - Chr8:89678636-89678655 MsG0880047693.01.T01:intron 35.0%
! ACACAGTTTACACGAGTTTT+AGG + Chr8:89679624-89679643 None:intergenic 35.0%
! CACAGTTTACACGAGTTTTA+GGG + Chr8:89679623-89679642 None:intergenic 35.0%
! CCAATTTCGCCATTACATTT+TGG + Chr8:89680176-89680195 None:intergenic 35.0%
! CTTTCAATCTAAAGTGTCAG+TGG + Chr8:89679782-89679801 None:intergenic 35.0%
! GGTTGACCAAATACGATTTT+AGG + Chr8:89677232-89677251 None:intergenic 35.0%
! TACCTTCAGAAGAAGTATAG+TGG + Chr8:89679156-89679175 None:intergenic 35.0%
! TATCTGAAATAGAATGACGG+TGG - Chr8:89677669-89677688 MsG0880047693.01.T01:intron 35.0%
! TTATCTCCCATAACTTGTCA+AGG + Chr8:89679124-89679143 None:intergenic 35.0%
! TTTGTAGAGCATTTGAGACA+TGG + Chr8:89678609-89678628 None:intergenic 35.0%
!! ACAGTTTACACGAGTTTTAG+GGG + Chr8:89679622-89679641 None:intergenic 35.0%
!! CTCTGAAACTGAGAAAAACA+AGG + Chr8:89678165-89678184 None:intergenic 35.0%
!! GATATATGAAGCACTGATAC+TGG + Chr8:89679923-89679942 None:intergenic 35.0%
!! TTGTGTCTGAATGGATTTTG+TGG - Chr8:89679945-89679964 MsG0880047693.01.T01:intron 35.0%
!! TTTGGCTTGTTACAGAAGTA+TGG - Chr8:89679023-89679042 MsG0880047693.01.T01:CDS 35.0%
!!! AGGGGATTTTGCTTTTTAAG+GGG - Chr8:89680278-89680297 MsG0880047693.01.T01:CDS 35.0%
!!! TTTTTTTTTGGCTTTCGCAC+CGG + Chr8:89677404-89677423 None:intergenic 35.0%
ACCTTTGATGTATCGGAAAC+CGG - Chr8:89677382-89677401 MsG0880047693.01.T01:three_prime_UTR 40.0%
ACTCACCATAGCAGAATTAC+TGG + Chr8:89679688-89679707 None:intergenic 40.0%
AGAGAAGATGAATTCACACC+TGG + Chr8:89678657-89678676 None:intergenic 40.0%
AGCCACTATACTTCTTCTGA+AGG - Chr8:89679151-89679170 MsG0880047693.01.T01:intron 40.0%
ATCTTCTAGTATGCTTCCGT+TGG - Chr8:89680143-89680162 MsG0880047693.01.T01:intron 40.0%
ATGTAGCTGCTGAAAAACTG+AGG - Chr8:89678551-89678570 MsG0880047693.01.T01:CDS 40.0%
ATGTGTGGTGTAGATCCTAA+TGG - Chr8:89677206-89677225 MsG0880047693.01.T01:three_prime_UTR 40.0%
ATTCGGTCCTTGACAAGTTA+TGG - Chr8:89679114-89679133 MsG0880047693.01.T01:intron 40.0%
ATTTGGTCAACCAAGTTGCT+TGG - Chr8:89677240-89677259 MsG0880047693.01.T01:three_prime_UTR 40.0%
CATCACCAGTAATTCTGCTA+TGG - Chr8:89679680-89679699 MsG0880047693.01.T01:intron 40.0%
CATTCTGCAAACCCAAGATT+CGG - Chr8:89679097-89679116 MsG0880047693.01.T01:intron 40.0%
CTCAAATGCTCTACAAAGGA+AGG - Chr8:89678612-89678631 MsG0880047693.01.T01:intron 40.0%
GAAACTATAGTAGTTTCCGG+CGG - Chr8:89680090-89680109 MsG0880047693.01.T01:intron 40.0%
GGGTCTAGTCCAAAATGTAA+TGG - Chr8:89680164-89680183 MsG0880047693.01.T01:intron 40.0%
GTTATCATTTCATCGATCGC+TGG - Chr8:89679406-89679425 MsG0880047693.01.T01:intron 40.0%
TAACATACATACTGTCCAGC+TGG + Chr8:89678827-89678846 None:intergenic 40.0%
TCGGATTCGAAGGTAGAAAA+TGG - Chr8:89678212-89678231 MsG0880047693.01.T01:CDS 40.0%
TCTTCTAGTATGCTTCCGTT+GGG - Chr8:89680144-89680163 MsG0880047693.01.T01:intron 40.0%
TGCAGAATGGAATCAACAGA+AGG + Chr8:89679086-89679105 None:intergenic 40.0%
TGTAGCTGCTGAAAAACTGA+GGG - Chr8:89678552-89678571 MsG0880047693.01.T01:CDS 40.0%
TTCGGTCCTTGACAAGTTAT+GGG - Chr8:89679115-89679134 MsG0880047693.01.T01:intron 40.0%
TTTACCATTGCTGAGAGACT+TGG - Chr8:89678297-89678316 MsG0880047693.01.T01:intron 40.0%
TTTGGTCAACCAAGTTGCTT+GGG - Chr8:89677241-89677260 MsG0880047693.01.T01:three_prime_UTR 40.0%
! TGGTCATTAGTGTTACTGCT+AGG + Chr8:89678744-89678763 None:intergenic 40.0%
!! ACATTTTGGACTAGACCCAA+CGG + Chr8:89680162-89680181 None:intergenic 40.0%
!!! CGGTGGACCCAAATTTTTTT+AGG - Chr8:89677686-89677705 MsG0880047693.01.T01:intron 40.0%
!!! GGATTTTGCTTTTTAAGGGG+GGG - Chr8:89680281-89680300 MsG0880047693.01.T01:CDS 40.0%
!!! GGGATTTTGCTTTTTAAGGG+GGG - Chr8:89680280-89680299 MsG0880047693.01.T01:CDS 40.0%
!!! GGGGATTTTGCTTTTTAAGG+GGG - Chr8:89680279-89680298 MsG0880047693.01.T01:CDS 40.0%
AATGGAAGCTACAGTCTCGA+TGG + Chr8:89680120-89680139 None:intergenic 45.0%
ACATAGCCATACTAGCTGGT+GGG + Chr8:89679438-89679457 None:intergenic 45.0%
ACTGCTTCAACACAGGGAAT+TGG - Chr8:89678273-89678292 MsG0880047693.01.T01:intron 45.0%
ACTTGGTACAACCGAAGACA+TGG - Chr8:89680017-89680036 MsG0880047693.01.T01:intron 45.0%
ACTTGTCAAGGACCGAATCT+TGG + Chr8:89679112-89679131 None:intergenic 45.0%
AGAAGGATTTGCAGCAGCAT+TGG + Chr8:89679069-89679088 None:intergenic 45.0%
ATCGTGACTGCTTCAACACA+GGG - Chr8:89678267-89678286 MsG0880047693.01.T01:intron 45.0%
CAAACCAAGTCTCTCAGCAA+TGG + Chr8:89678304-89678323 None:intergenic 45.0%
CCAGCTAGTATGGCTATGTA+TGG - Chr8:89679439-89679458 MsG0880047693.01.T01:intron 45.0%
CCATACATAGCCATACTAGC+TGG + Chr8:89679442-89679461 None:intergenic 45.0%
CGAATCTTGGGTTTGCAGAA+TGG + Chr8:89679099-89679118 None:intergenic 45.0%
CTTGGTACAACCGAAGACAT+GGG - Chr8:89680018-89680037 MsG0880047693.01.T01:intron 45.0%
CTTGTCAAGGACCGAATCTT+GGG + Chr8:89679111-89679130 None:intergenic 45.0%
GACTTTGGTAAGGCCAAGAA+GGG + Chr8:89679479-89679498 None:intergenic 45.0%
GGAGAAAATCTCCATGAGCT+TGG + Chr8:89677613-89677632 None:intergenic 45.0%
GGTTTCCGATACATCAAAGG+TGG + Chr8:89677383-89677402 None:intergenic 45.0%
GTAACCAAAACAGCCCTTCT+TGG - Chr8:89679463-89679482 MsG0880047693.01.T01:intron 45.0%
GTCGTCCACCTTTGATGTAT+CGG - Chr8:89677375-89677394 MsG0880047693.01.T01:three_prime_UTR 45.0%
TACACAACACAGGAGATTCG+AGG + Chr8:89679742-89679761 None:intergenic 45.0%
TACATAGCCATACTAGCTGG+TGG + Chr8:89679439-89679458 None:intergenic 45.0%
TCAAAGGTGGACGACTAATC+CGG + Chr8:89677370-89677389 None:intergenic 45.0%
TGTTATCTCTTCTCGCAGAC+AGG - Chr8:89678338-89678357 MsG0880047693.01.T01:intron 45.0%
TTATCACCCACCAGCTAGTA+TGG - Chr8:89679429-89679448 MsG0880047693.01.T01:intron 45.0%
! AAGAACTGGACTTGGTAACC+TGG + Chr8:89678803-89678822 None:intergenic 45.0%
! ACCGGTTTCCGATACATCAA+AGG + Chr8:89677386-89677405 None:intergenic 45.0%
! CATTGCTGAGAGACTTGGTT+TGG - Chr8:89678302-89678321 MsG0880047693.01.T01:intron 45.0%
!! ATTTGGGTTGACCAAGCTCA+TGG - Chr8:89677599-89677618 MsG0880047693.01.T01:CDS 45.0%
!! CTTCTTGGCCTTACCAAAGT+CGG - Chr8:89679478-89679497 MsG0880047693.01.T01:intron 45.0%
!! AAAAAAAAAAAAAATTCATT+TGG - Chr8:89677582-89677601 MsG0880047693.01.T01:CDS 5.0%
!! AAAAAAAAAAAAATTCATTT+GGG - Chr8:89677583-89677602 MsG0880047693.01.T01:CDS 5.0%
!!! ATTTTATATAGTATATATTA+TGG - Chr8:89677994-89678013 MsG0880047693.01.T01:CDS 5.0%
!!! TTATTCTTTTTTTTTTTTTT+TGG + Chr8:89677806-89677825 None:intergenic 5.0%
AATACCGGGTTCGATTCCCA+GGG - Chr8:89677304-89677323 MsG0880047693.01.T01:three_prime_UTR 50.0%
ACTGTCCAGCTGGTAAGAAC+TGG + Chr8:89678817-89678836 None:intergenic 50.0%
AGGACGTATTCGGGGAATAC+CGG - Chr8:89677289-89677308 MsG0880047693.01.T01:three_prime_UTR 50.0%
CAAGTCCAGTTCTTACCAGC+TGG - Chr8:89678809-89678828 MsG0880047693.01.T01:intron 50.0%
CACAGGAGATTCGAGGAAAG+AGG + Chr8:89679735-89679754 None:intergenic 50.0%
CAGCTGGTAAGAACTGGACT+TGG + Chr8:89678811-89678830 None:intergenic 50.0%
CGACTTTGGTAAGGCCAAGA+AGG + Chr8:89679480-89679499 None:intergenic 50.0%
CTAATCCGGCTCATGCATAG+AGG + Chr8:89677356-89677375 None:intergenic 50.0%
CTCCTTCCAAGGACGTATTC+GGG - Chr8:89677280-89677299 MsG0880047693.01.T01:three_prime_UTR 50.0%
GAAGAACCCTTCGGCAAGTA+TGG + Chr8:89679382-89679401 None:intergenic 50.0%
GATCGTGACTGCTTCAACAC+AGG - Chr8:89678266-89678285 MsG0880047693.01.T01:intron 50.0%
GCTCCTTCCAAGGACGTATT+CGG - Chr8:89677279-89677298 MsG0880047693.01.T01:three_prime_UTR 50.0%
GCTGAAAAACTGAGGGCCAA+AGG - Chr8:89678559-89678578 MsG0880047693.01.T01:CDS 50.0%
GTATTCCCCGAATACGTCCT+TGG + Chr8:89677289-89677308 None:intergenic 50.0%
TCCTTCCAAGGACGTATTCG+GGG - Chr8:89677281-89677300 MsG0880047693.01.T01:three_prime_UTR 50.0%
TGTAGCAGCACCCATGTCTT+CGG + Chr8:89680031-89680050 None:intergenic 50.0%
! AAGGCCAAGAAGGGCTGTTT+TGG + Chr8:89679470-89679489 None:intergenic 50.0%
! CGTGTAAACTGTGTTGCTCC+TGG - Chr8:89679630-89679649 MsG0880047693.01.T01:intron 50.0%
!! GCTGAGAGACTTGGTTTGGA+AGG - Chr8:89678306-89678325 MsG0880047693.01.T01:intron 50.0%
!! GGCAAGTACCGACTTTGGTA+AGG + Chr8:89679489-89679508 None:intergenic 50.0%
!! TGGAAGGCAAGTACCGACTT+TGG + Chr8:89679494-89679513 None:intergenic 50.0%
!!! GGGTGCTGCTACAGCTTTTT+TGG - Chr8:89680038-89680057 MsG0880047693.01.T01:intron 50.0%
ACCTAAGCGTGTGGCTGTGT+CGG - Chr8:89678193-89678212 MsG0880047693.01.T01:CDS 55.0%
ATACCGGGTTCGATTCCCAG+GGG - Chr8:89677305-89677324 MsG0880047693.01.T01:three_prime_UTR 55.0%
CACAGCCACACGCTTAGGTT+CGG + Chr8:89678192-89678211 None:intergenic 55.0%
GAATACCGGGTTCGATTCCC+AGG - Chr8:89677303-89677322 MsG0880047693.01.T01:three_prime_UTR 55.0%
GACAACCGAACCTAAGCGTG+TGG - Chr8:89678184-89678203 MsG0880047693.01.T01:CDS 55.0%
GCAGCTCCATACTTGCCGAA+GGG - Chr8:89679373-89679392 MsG0880047693.01.T01:CDS 55.0%
GCATGCCTCTATGCATGAGC+CGG - Chr8:89677348-89677367 MsG0880047693.01.T01:three_prime_UTR 55.0%
GGACGTATTCGGGGAATACC+GGG - Chr8:89677290-89677309 MsG0880047693.01.T01:three_prime_UTR 55.0%
TCCCCGAATACGTCCTTGGA+AGG + Chr8:89677285-89677304 None:intergenic 55.0%
TGCAGCTCCATACTTGCCGA+AGG - Chr8:89679372-89679391 MsG0880047693.01.T01:CDS 55.0%
TGTGGCTGTGTCGGATTCGA+AGG - Chr8:89678202-89678221 MsG0880047693.01.T01:CDS 55.0%
! ATGCATAGAGGCATGCGCAC+TGG + Chr8:89677344-89677363 None:intergenic 55.0%
CAGTCTCGATGGCATTCCGC+CGG + Chr8:89680109-89680128 None:intergenic 60.0%
CCAAGTTGCTTGGGCTCCAG+TGG - Chr8:89677250-89677269 MsG0880047693.01.T01:three_prime_UTR 60.0%
CCACTGGAGCCCAAGCAACT+TGG + Chr8:89677253-89677272 None:intergenic 60.0%
GTGGCATGGAGCTCCTTCCA+AGG - Chr8:89677269-89677288 MsG0880047693.01.T01:three_prime_UTR 60.0%
TACCGGGTTCGATTCCCAGG+GGG - Chr8:89677306-89677325 MsG0880047693.01.T01:three_prime_UTR 60.0%
TCCGACACAGCCACACGCTT+AGG + Chr8:89678197-89678216 None:intergenic 60.0%
TGGAAGGAGCTCCATGCCAC+TGG + Chr8:89677269-89677288 None:intergenic 60.0%
TTCCCAGGGGGAACAACGCT+TGG - Chr8:89677318-89677337 MsG0880047693.01.T01:three_prime_UTR 60.0%
TTCCCCCTGGGAATCGAACC+CGG + Chr8:89677311-89677330 None:intergenic 60.0%
TTGCTTGGGCTCCAGTGGCA+TGG - Chr8:89677255-89677274 MsG0880047693.01.T01:three_prime_UTR 60.0%
AGGGGCCATCTCAGCAGCCA+GGG + Chr8:89679604-89679623 None:intergenic 65.0%
GTAGGCCCTGGCTGCTGAGA+TGG - Chr8:89679596-89679615 MsG0880047693.01.T01:intron 65.0%
TAGGGGCCATCTCAGCAGCC+AGG + Chr8:89679605-89679624 None:intergenic 65.0%
! GGCCAAGCGTTGTTCCCCCT+GGG + Chr8:89677323-89677342 None:intergenic 65.0%
! TGGCCAAGCGTTGTTCCCCC+TGG + Chr8:89677324-89677343 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr8 gene 89677206 89680421 89677206 ID=MsG0880047693.01;Name=MsG0880047693.01
Chr8 mRNA 89677206 89680421 89677206 ID=MsG0880047693.01.T01;Parent=MsG0880047693.01;Name=MsG0880047693.01.T01;_AED=0.49;_eAED=0.57;_QI=0|0.83|0.71|1|0.5|0.71|7|290|319
Chr8 exon 89677206 89677645 89677206 ID=MsG0880047693.01.T01:exon:2555;Parent=MsG0880047693.01.T01
Chr8 exon 89677926 89678027 89677926 ID=MsG0880047693.01.T01:exon:2554;Parent=MsG0880047693.01.T01
Chr8 exon 89678132 89678257 89678132 ID=MsG0880047693.01.T01:exon:2553;Parent=MsG0880047693.01.T01
Chr8 exon 89678455 89678589 89678455 ID=MsG0880047693.01.T01:exon:2552;Parent=MsG0880047693.01.T01
Chr8 exon 89678970 89679086 89678970 ID=MsG0880047693.01.T01:exon:2551;Parent=MsG0880047693.01.T01
Chr8 exon 89679268 89679399 89679268 ID=MsG0880047693.01.T01:exon:2550;Parent=MsG0880047693.01.T01
Chr8 exon 89680224 89680421 89680224 ID=MsG0880047693.01.T01:exon:2549;Parent=MsG0880047693.01.T01
Chr8 CDS 89680224 89680421 89680224 ID=MsG0880047693.01.T01:cds;Parent=MsG0880047693.01.T01
Chr8 CDS 89679268 89679399 89679268 ID=MsG0880047693.01.T01:cds;Parent=MsG0880047693.01.T01
Chr8 CDS 89678970 89679086 89678970 ID=MsG0880047693.01.T01:cds;Parent=MsG0880047693.01.T01
Chr8 CDS 89678455 89678589 89678455 ID=MsG0880047693.01.T01:cds;Parent=MsG0880047693.01.T01
Chr8 CDS 89678132 89678257 89678132 ID=MsG0880047693.01.T01:cds;Parent=MsG0880047693.01.T01
Chr8 CDS 89677926 89678027 89677926 ID=MsG0880047693.01.T01:cds;Parent=MsG0880047693.01.T01
Chr8 CDS 89677496 89677645 89677496 ID=MsG0880047693.01.T01:cds;Parent=MsG0880047693.01.T01
Chr8 three_prime_UTR 89677206 89677495 89677206 ID=MsG0880047693.01.T01:three_prime_utr;Parent=MsG0880047693.01.T01
Gene Sequence

>MsG0880047693.01.T01

ATGTGTGGTGTAGATCCTAATGGCCTAAAATCGTATTTGGTCAACCAAGTTGCTTGGGCTCCAGTGGCATGGAGCTCCTTCCAAGGACGTATTCGGGGAATACCGGGTTCGATTCCCAGGGGGAACAACGCTTGGCCAGTGCGCATGCCTCTATGCATGAGCCGGATTAGTCGTCCACCTTTGATGTATCGGAAACCGAAAATGGAAATTCCAAAGAGATTCAAAGGAAAGGTTGCGATCGTGACTGCTTCAACACAGGGAATTGGTTTTACCATTGCTGAGAGACTTGGTTTGGAAGGTGCTTCTGTTGTTATCTCTTCTCGCAGACAGAAAAATGTTGATGTAGCTGCTGAAAAACTGAGGGCCAAAGGAATTGATGTATTTGCAGTTGTTTGCCATGTCTCAAATGCTCTACAAAGGAAGGATTTGATTGACAAAACTGTCCAGAAGTATGGAAAGATAGATGTTGTTGTGTCCAATGCTGCTGCAAATCCTTCTGTTGATTCCATTCTGCAAACCCAAGATTCGGTCCTTGACAAGTTATGGGAGATAAATGTCAAAGCCACTATACTTCTTCTGAAGGATGCAGCTCCATACTTGCCGAAGGGTTCTTCTGTTGTTATCATTTCATCGATCGCTGGTTATCACCCACCAGCTAGTATGGCTATGTATGGAGTAACCAAAACAGCCCTTCTTGGCCTTACCAAAGCCCTGGCTGCTGAGATGGCCCCTAAAACTCGTGTAAACTGTGTTGCTCCTGGTTTTGTACCAACTAATTTTGCTTCATTCATCACCAGTAATTCTGCTATGAGAGAAGAGCTTGAAGCAAAGACATTACTTGGAAGACTTGGTACAACCGAAGACATGGGTGCTGCTACAGCTTTTTTGGCATCTGATGATGCGTCATATATAACAGGAGAAACTATAGTAGTTTCCGGCGGAATGCCATCGAGACTGTAG

Protein sequence

>MsG0880047693.01.T01

MCGVDPNGLKSYLVNQVAWAPVAWSSFQGRIRGIPGSIPRGNNAWPVRMPLCMSRISRPPLMYRKPKMEIPKRFKGKVAIVTASTQGIGFTIAERLGLEGASVVISSRRQKNVDVAAEKLRAKGIDVFAVVCHVSNALQRKDLIDKTVQKYGKIDVVVSNAAANPSVDSILQTQDSVLDKLWEINVKATILLLKDAAPYLPKGSSVVIISSIAGYHPPASMAMYGVTKTALLGLTKALAAEMAPKTRVNCVAPGFVPTNFASFITSNSAMREELEAKTLLGRLGTTEDMGAATAFLASDDASYITGETIVVSGGMPSRL*