Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0000790 | XP_013450227.1 | 98.119 | 319 | 6 | 0 | 1 | 319 | 1 | 319 | 0.0 | 656 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0000790 | sp|Q640V9|TATD1_XENLA | 50.331 | 302 | 143 | 5 | 1 | 302 | 1 | 295 | 6.22e-108 | 319 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000790 | Msa0303390 | 0.804162 | 2.465609e-49 | -8.615850e-47 |
| Msa0000790 | Msa1080830 | 0.845728 | 3.388379e-59 | -8.615850e-47 |
| Msa0000790 | Msa1118970 | 0.937303 | 4.313421e-98 | -8.615850e-47 |
| Msa0000790 | Msa1420530 | 0.918280 | 1.892880e-86 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0000790 | MtrunA17_Chr7g0267561 | 98.119 | 319 | 6 | 0 | 1 | 319 | 1 | 319 | 0.0 | 656 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0000790 | AT3G52390.1 | 81.587 | 315 | 58 | 0 | 1 | 315 | 1 | 315 | 0.0 | 553 |
| Msa0000790 | AT3G52390.2 | 80.818 | 318 | 58 | 1 | 1 | 315 | 1 | 318 | 0.0 | 548 |
Find 82 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTGCAGATGGAATGTTTA+AGG | 0.179710 | 1_1:-2089935 | Msa0000790:intron |
| CCATTCATTTACCGGTAGTA+TGG | 0.274416 | 1_1:-2088441 | Msa0000790:CDS |
| GGTACACTGACAGGCATAAA+TGG | 0.296686 | 1_1:-2088081 | Msa0000790:intron |
| TACTTCTCTTTCTTCTTAGA+AGG | 0.309073 | 1_1:+2087922 | None:intergenic |
| CAAGTTCTTGAGGTGGTTGC+TGG | 0.314482 | 1_1:-2087665 | Msa0000790:CDS |
| GTGTAATCTCTCTCAAGAAT+TGG | 0.339719 | 1_1:+2086961 | None:intergenic |
| TGTAATCTCTCTCAAGAATT+GGG | 0.341746 | 1_1:+2086962 | None:intergenic |
| AAACAAAACTATTATGATAA+AGG | 0.353733 | 1_1:-2086778 | Msa0000790:three_prime_UTR |
| AGATTTAACAAAACCTATTC+CGG | 0.363419 | 1_1:+2087951 | None:intergenic |
| CGTAACTGGTGGATCCCTTC+AGG | 0.367497 | 1_1:-2089827 | Msa0000790:CDS |
| AAGAATACTCATGCCGGAAT+AGG | 0.370394 | 1_1:-2087964 | Msa0000790:CDS |
| TGTTTACGATATAAAATTGT+TGG | 0.376504 | 1_1:-2090322 | None:intergenic |
| TTGAACAGAGCTTGGGCTGC+TGG | 0.381184 | 1_1:-2089865 | Msa0000790:CDS |
| TCAATCATCATTCTCTCAAC+AGG | 0.397537 | 1_1:+2088012 | None:intergenic |
| GGTGTCACCCATTCATTTAC+CGG | 0.403791 | 1_1:-2088449 | Msa0000790:CDS |
| ATTGCAGATGGAATGTTTAA+GGG | 0.415859 | 1_1:-2089934 | Msa0000790:intron |
| CCATACTACCGGTAAATGAA+TGG | 0.419461 | 1_1:+2088441 | None:intergenic |
| ATTTAGGAATTTGAGGAGAG+TGG | 0.434545 | 1_1:-2089460 | Msa0000790:intron |
| GTTCACCGAATCATCGTAAC+TGG | 0.440208 | 1_1:-2089841 | Msa0000790:CDS |
| GTTTACGATATAAAATTGTT+GGG | 0.441361 | 1_1:-2090321 | None:intergenic |
| GATATTGCTGTTAACTTCAC+AGG | 0.448944 | 1_1:-2090040 | Msa0000790:intron |
| CATTGTACCACAATACTTGC+AGG | 0.449225 | 1_1:-2087604 | Msa0000790:intron |
| AAGCAGACATGGCAGCTATT+CGG | 0.450967 | 1_1:-2090170 | Msa0000790:exon |
| ATATAAAATTGTTGGGGTGT+TGG | 0.451544 | 1_1:-2090314 | None:intergenic |
| AGCTGCAGATTTCTGTGAAA+TGG | 0.453615 | 1_1:-2088872 | Msa0000790:CDS |
| ATGGCAGCTATTCGGATGAT+AGG | 0.456359 | 1_1:-2090162 | Msa0000790:intron |
| AGTATTCTTGATTTCGCAGT+AGG | 0.457640 | 1_1:+2087978 | None:intergenic |
| CACTTCATCTTCTTCTTCTG+TGG | 0.463893 | 1_1:-2090249 | Msa0000790:five_prime_UTR |
| GTGGATCCCTTCAGGAATCA+AGG | 0.468309 | 1_1:-2089819 | Msa0000790:CDS |
| GAGGTGGTTGCTGGCTGTAA+AGG | 0.472385 | 1_1:-2087656 | Msa0000790:CDS |
| GCAATGAGCCTTGTTCAGTT+AGG | 0.474293 | 1_1:-2087873 | Msa0000790:intron |
| TCGTTGCTTCACCTCACTAC+AGG | 0.480936 | 1_1:+2090192 | None:intergenic |
| CTTGCCATTGCTGAAACTGA+TGG | 0.480998 | 1_1:-2089790 | Msa0000790:intron |
| AAGATGAAGTGCTGAACATT+CGG | 0.482462 | 1_1:+2090261 | None:intergenic |
| ATCCACCAGTTACGATGATT+CGG | 0.484521 | 1_1:+2089836 | None:intergenic |
| TCACCTCACTACAGGAGAAA+AGG | 0.489765 | 1_1:+2090200 | None:intergenic |
| TATTATGATAAAGGTTCCAA+TGG | 0.499165 | 1_1:-2086769 | Msa0000790:three_prime_UTR |
| ATATGCAAGGTGGTTGCAGT+TGG | 0.510781 | 1_1:-2089132 | Msa0000790:intron |
| GGTGTTGGTATTAAATAGTG+AGG | 0.512050 | 1_1:-2090299 | Msa0000790:five_prime_UTR |
| ATCAATGACGTGGGTAGCCT+CGG | 0.515221 | 1_1:-2087632 | Msa0000790:CDS |
| CATACTACCGGTAAATGAAT+GGG | 0.528644 | 1_1:+2088442 | None:intergenic |
| GAGCTTCCCTTGATTCCTGA+AGG | 0.541070 | 1_1:+2089812 | None:intergenic |
| AAATCAACCTTGCAATGTGT+TGG | 0.542646 | 1_1:+2089555 | None:intergenic |
| CCCGCATGACTTGGATTCTG+CGG | 0.544613 | 1_1:-2087091 | Msa0000790:CDS |
| ATGTTCCAGGCAAGTTCTTG+AGG | 0.547709 | 1_1:-2087675 | Msa0000790:intron |
| ATTATGATAAAGGTTCCAAT+GGG | 0.559221 | 1_1:-2086768 | Msa0000790:three_prime_UTR |
| GTGGTTGCAGTTGGAGAGTG+TGG | 0.563440 | 1_1:-2089123 | Msa0000790:CDS |
| GCCCCGCCGAGATTCAAAAG+AGG | 0.565535 | 1_1:-2089074 | Msa0000790:intron |
| TGAGAACCTTGATGTTGTCA+AGG | 0.568216 | 1_1:-2088040 | Msa0000790:CDS |
| GTGAAGCAACGAAGCAGACA+TGG | 0.571755 | 1_1:-2090181 | Msa0000790:exon |
| CAAGCTCTGTTCAAAACAGT+TGG | 0.572850 | 1_1:+2089874 | None:intergenic |
| CTGTAAAGGCATCAATGACG+TGG | 0.573785 | 1_1:-2087642 | Msa0000790:CDS |
| TCATTTGATAAAATGTACAT+TGG | 0.575483 | 1_1:-2088398 | Msa0000790:intron |
| GCTAAAGAGGGAATTCAGAA+AGG | 0.576535 | 1_1:-2089400 | Msa0000790:CDS |
| AATGCAATCATCCATACTAC+CGG | 0.579184 | 1_1:+2088430 | None:intergenic |
| GATCAAGATTGTATTGTCAA+AGG | 0.580228 | 1_1:-2087898 | Msa0000790:CDS |
| AGCTTCCCTTGATTCCTGAA+GGG | 0.580403 | 1_1:+2089813 | None:intergenic |
| AGTGTGGATTAGACTATGAC+CGG | 0.580933 | 1_1:-2089107 | Msa0000790:CDS |
| TTTACGATATAAAATTGTTG+GGG | 0.581314 | 1_1:-2090320 | None:intergenic |
| TTCCAGGCAAGTTCTTGAGG+TGG | 0.584211 | 1_1:-2087672 | Msa0000790:intron |
| CTACAGGAGAAAAGGATCGA+TGG | 0.585562 | 1_1:+2090208 | None:intergenic |
| AAACTATTAGAACTGCCCAT+TGG | 0.586072 | 1_1:+2086753 | None:intergenic |
| CCGCAGAATCCAAGTCATGC+GGG | 0.587287 | 1_1:+2087091 | None:intergenic |
| GAAATCAAGAATACTCATGC+CGG | 0.587360 | 1_1:-2087970 | Msa0000790:CDS |
| TGGTTGAGAAACATAAAGAC+AGG | 0.587924 | 1_1:-2088852 | Msa0000790:intron |
| CACCGAATCATCGTAACTGG+TGG | 0.594177 | 1_1:-2089838 | Msa0000790:CDS |
| GTATTCTTGATTTCGCAGTA+GGG | 0.599813 | 1_1:+2087979 | None:intergenic |
| AGAGGGAATTCAGAAAGGAA+AGG | 0.606009 | 1_1:-2089395 | Msa0000790:intron |
| TCTCTCTCAAGAATTGGGGA+TGG | 0.610326 | 1_1:+2086967 | None:intergenic |
| TGGATCCCTTCAGGAATCAA+GGG | 0.611907 | 1_1:-2089818 | Msa0000790:CDS |
| GCCATTTACCTAACTGAACA+AGG | 0.612592 | 1_1:+2087865 | None:intergenic |
| GCCGCAGAATCCAAGTCATG+CGG | 0.616525 | 1_1:+2087090 | None:intergenic |
| GAGAACCTTGATGTTGTCAA+GGG | 0.622857 | 1_1:-2088039 | Msa0000790:CDS |
| GTAATCTCTCTCAAGAATTG+GGG | 0.629460 | 1_1:+2086963 | None:intergenic |
| ATGTTTAAGGGAATCTACAA+TGG | 0.631092 | 1_1:-2089922 | Msa0000790:CDS |
| GAATACCCTTGACAACATCA+AGG | 0.648280 | 1_1:+2088034 | None:intergenic |
| TATGTTACCTGCAAGTATTG+TGG | 0.653280 | 1_1:+2087597 | None:intergenic |
| CAAACCATCAGTTTCAGCAA+TGG | 0.654081 | 1_1:+2089786 | None:intergenic |
| GTGTTGGTATTAAATAGTGA+GGG | 0.656889 | 1_1:-2090298 | Msa0000790:five_prime_UTR |
| TGTGCATCCAACACATTGCA+AGG | 0.660551 | 1_1:-2089562 | Msa0000790:intron |
| TGTAAAGGCATCAATGACGT+GGG | 0.682265 | 1_1:-2087641 | Msa0000790:CDS |
| TGTGGTACAATGTTCTACCG+AGG | 0.707211 | 1_1:+2087615 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAATTATCATCAAAATT+AGG | + | chr1_1:2087411-2087430 | None:intergenic | 10.0% |
| !!! | AGTTTAATATTTTTTAAACA+GGG | + | chr1_1:2088030-2088049 | None:intergenic | 10.0% |
| !!! | TAGTTTAATATTTTTTAAAC+AGG | + | chr1_1:2088031-2088050 | None:intergenic | 10.0% |
| !!! | GTTTAATATTTTTTAAACAG+GGG | + | chr1_1:2088029-2088048 | None:intergenic | 15.0% |
| !!! | GAATATTTAAGATTTCAAAA+TGG | + | chr1_1:2088227-2088246 | None:intergenic | 15.0% |
| !! | AATCTTAAATATTCAAACAA+TGG | - | chr1_1:2088233-2088252 | Msa0000790:intron | 15.0% |
| !! | CTGATTATAAAAAGATAAAT+AGG | - | chr1_1:2089556-2089575 | Msa0000790:intron | 15.0% |
| !!! | TATCATAATAGTTTTGTTTT+TGG | + | chr1_1:2090256-2090275 | None:intergenic | 15.0% |
| !! | AAACAAAACTATTATGATAA+AGG | - | chr1_1:2090257-2090276 | Msa0000790:five_prime_UTR | 15.0% |
| !!! | GCATTTAATTAAGTTGTTTA+TGG | - | chr1_1:2087377-2087396 | Msa0000790:intron | 20.0% |
| !!! | TTAAGTTGTTTATGGAAATA+TGG | - | chr1_1:2087385-2087404 | Msa0000790:intron | 20.0% |
| !!! | TATTTCTAAAAATGCTTACT+TGG | + | chr1_1:2087859-2087878 | None:intergenic | 20.0% |
| !!! | TTTTTTCTTTTTCATATGCA+AGG | - | chr1_1:2087890-2087909 | Msa0000790:CDS | 20.0% |
| !! | CTCAAAATGAATAAAATGAT+AGG | + | chr1_1:2088283-2088302 | None:intergenic | 20.0% |
| !! | TCATTTGATAAAATGTACAT+TGG | - | chr1_1:2088637-2088656 | Msa0000790:intron | 20.0% |
| !!! | ATCTAAAATTAGACATACTA+GGG | + | chr1_1:2088713-2088732 | None:intergenic | 20.0% |
| !!! | AATCTAAAATTAGACATACT+AGG | + | chr1_1:2088714-2088733 | None:intergenic | 20.0% |
| !!! | TTTACTTGTGGTTATATTTT+TGG | + | chr1_1:2088745-2088764 | None:intergenic | 20.0% |
| !! | TTAAAAGATGAACTTACTTT+AGG | - | chr1_1:2088798-2088817 | Msa0000790:intron | 20.0% |
| !! | TATCATTTATGGAATTTAAC+TGG | + | chr1_1:2088925-2088944 | None:intergenic | 20.0% |
| !! | AAGATTAACAATCATATACA+GGG | + | chr1_1:2089289-2089308 | None:intergenic | 20.0% |
| !! | AAAGATTAACAATCATATAC+AGG | + | chr1_1:2089290-2089309 | None:intergenic | 20.0% |
| !!! | GATAGTCATTTAAAATATGA+AGG | + | chr1_1:2089315-2089334 | None:intergenic | 20.0% |
| !! | TTAATATGCTAATGTTTGAT+TGG | - | chr1_1:2089808-2089827 | Msa0000790:CDS | 20.0% |
| !! | TTTATCAAACACTTTGTTTG+CGG | - | chr1_1:2087030-2087049 | Msa0000790:three_prime_UTR | 25.0% |
| ! | TATTTCAAAATCATTGCAGA+TGG | - | chr1_1:2087089-2087108 | Msa0000790:CDS | 25.0% |
| ! | TTGATTGATTGTTTGATCAT+AGG | - | chr1_1:2087429-2087448 | Msa0000790:intron | 25.0% |
| !!! | GTTGATTTTCTTTACTCTTT+CGG | - | chr1_1:2087495-2087514 | Msa0000790:intron | 25.0% |
| !!! | TGTTTTGATTTAGGAATTTG+AGG | - | chr1_1:2087568-2087587 | Msa0000790:intron | 25.0% |
| ! | CTGAATCTTGATTTCTTAAT+TGG | - | chr1_1:2087751-2087770 | Msa0000790:intron | 25.0% |
| ! | TACATGAATAACAACATACA+TGG | + | chr1_1:2087800-2087819 | None:intergenic | 25.0% |
| !!! | TTTTGAGAAGCAATTTGAAT+TGG | - | chr1_1:2088097-2088116 | Msa0000790:intron | 25.0% |
| ! | AATGAATAAAATGATAGGCT+AGG | + | chr1_1:2088278-2088297 | None:intergenic | 25.0% |
| !!! | TTGTTTACTCTTTCAAGTTT+GGG | - | chr1_1:2088355-2088374 | Msa0000790:intron | 25.0% |
| ! | ATTTGTTTGCTTGTAATTGA+TGG | - | chr1_1:2088501-2088520 | Msa0000790:intron | 25.0% |
| !!! | ATTGTTTCTACTTTTATGAC+AGG | - | chr1_1:2088554-2088573 | Msa0000790:intron | 25.0% |
| !! | TTAAAATAGGTTGGCAAATA+TGG | + | chr1_1:2088686-2088705 | None:intergenic | 25.0% |
| !! | ATATTTGCCAACCTATTTTA+AGG | - | chr1_1:2088685-2088704 | Msa0000790:intron | 25.0% |
| !!! | TTGTGGTTATATTTTTGGAA+AGG | + | chr1_1:2088740-2088759 | None:intergenic | 25.0% |
| !! | AAGTTCATCTTTTAATCTCT+AGG | + | chr1_1:2088793-2088812 | None:intergenic | 25.0% |
| ! | AGATTTAACAAAACCTATTC+CGG | + | chr1_1:2089087-2089106 | None:intergenic | 25.0% |
| !!! | TAGGTTTTGTTAAATCTACA+TGG | - | chr1_1:2089090-2089109 | Msa0000790:CDS | 25.0% |
| ! | TGAAAAACTGATAAAACATC+AGG | + | chr1_1:2089665-2089684 | None:intergenic | 25.0% |
| !!! | AGTTTTTCAACGAACTTAAA+TGG | - | chr1_1:2089676-2089695 | Msa0000790:intron | 25.0% |
| ! | TATTATGATAAAGGTTCCAA+TGG | - | chr1_1:2090266-2090285 | Msa0000790:five_prime_UTR | 25.0% |
| ! | ATTATGATAAAGGTTCCAAT+GGG | - | chr1_1:2090267-2090286 | Msa0000790:five_prime_UTR | 25.0% |
| !! | TCTAATAGTTTTTGCTTACA+AGG | - | chr1_1:2090294-2090313 | Msa0000790:five_prime_UTR | 25.0% |
| ! | GTGTTGGTATTAAATAGTGA+GGG | - | chr1_1:2086737-2086756 | Msa0000790:three_prime_UTR | 30.0% |
| ATCAGTTAGTTACAGTTACA+GGG | + | chr1_1:2086937-2086956 | None:intergenic | 30.0% | |
| AATCAGTTAGTTACAGTTAC+AGG | + | chr1_1:2086938-2086957 | None:intergenic | 30.0% | |
| ATTGCAGATGGAATGTTTAA+GGG | - | chr1_1:2087101-2087120 | Msa0000790:CDS | 30.0% | |
| ATGTTTAAGGGAATCTACAA+TGG | - | chr1_1:2087113-2087132 | Msa0000790:intron | 30.0% | |
| AAGTGTTTGTAAATGTGACT+TGG | - | chr1_1:2087545-2087564 | Msa0000790:intron | 30.0% | |
| !! | TTTTCAGGATCTTTTGTCAT+TGG | - | chr1_1:2087613-2087632 | Msa0000790:CDS | 30.0% |
| AATCAAGATTCAGAACTATG+TGG | + | chr1_1:2087744-2087763 | None:intergenic | 30.0% | |
| !! | TTTCTTTTTCATATGCAAGG+TGG | - | chr1_1:2087893-2087912 | Msa0000790:CDS | 30.0% |
| ! | TATGTACCTCTTTTGAATCT+CGG | + | chr1_1:2087970-2087989 | None:intergenic | 30.0% |
| AAAGTAACATGTATAGCAAC+AGG | + | chr1_1:2088000-2088019 | None:intergenic | 30.0% | |
| AGAAATGAACTTGATCGTAA+GGG | - | chr1_1:2088301-2088320 | Msa0000790:intron | 30.0% | |
| TAAACAACATAGCTAAGGTT+TGG | + | chr1_1:2088342-2088361 | None:intergenic | 30.0% | |
| AAGAGTAAACAACATAGCTA+AGG | + | chr1_1:2088347-2088366 | None:intergenic | 30.0% | |
| !! | GTTGTTTACTCTTTCAAGTT+TGG | - | chr1_1:2088354-2088373 | Msa0000790:intron | 30.0% |
| ATTTATGAAGCGTGTATATC+AGG | + | chr1_1:2088465-2088484 | None:intergenic | 30.0% | |
| ! | AATTGATGGCATAATCACTT+TGG | - | chr1_1:2088515-2088534 | Msa0000790:intron | 30.0% |
| ! | ATTGATGGCATAATCACTTT+GGG | - | chr1_1:2088516-2088535 | Msa0000790:intron | 30.0% |
| ! | TATGGTAATGCTTGAAAAGA+TGG | + | chr1_1:2088668-2088687 | None:intergenic | 30.0% |
| GCAAGATAAAAGTTTACTTG+TGG | + | chr1_1:2088757-2088776 | None:intergenic | 30.0% | |
| CCAGAAATGTGTATCATTTA+TGG | + | chr1_1:2088936-2088955 | None:intergenic | 30.0% | |
| CCATAAATGATACACATTTC+TGG | - | chr1_1:2088933-2088952 | Msa0000790:CDS | 30.0% | |
| TACTTCTCTTTCTTCTTAGA+AGG | + | chr1_1:2089116-2089135 | None:intergenic | 30.0% | |
| GATCAAGATTGTATTGTCAA+AGG | - | chr1_1:2089137-2089156 | Msa0000790:intron | 30.0% | |
| AGTCAATCAGACATATTTCT+AGG | + | chr1_1:2089337-2089356 | None:intergenic | 30.0% | |
| ATTGATCCTATGTGTTTGTT+GGG | - | chr1_1:2089512-2089531 | Msa0000790:intron | 30.0% | |
| CAAATTTGAATCTGACTAGT+GGG | - | chr1_1:2089635-2089654 | Msa0000790:intron | 30.0% | |
| !! | TTATATATTCTGAAGCTCCA+AGG | - | chr1_1:2089895-2089914 | Msa0000790:CDS | 30.0% |
| TGTAATCTCTCTCAAGAATT+GGG | + | chr1_1:2090076-2090095 | None:intergenic | 30.0% | |
| ! | ACATTTTCAGATTCACTTCA+AGG | + | chr1_1:2090105-2090124 | None:intergenic | 30.0% |
| !!! | ATGTTTTTACTGCTACTTTG+CGG | - | chr1_1:2090121-2090140 | Msa0000790:intron | 30.0% |
| !! | GGTGTTGGTATTAAATAGTG+AGG | - | chr1_1:2086736-2086755 | Msa0000790:three_prime_UTR | 35.0% |
| !! | AAGATGAAGTGCTGAACATT+CGG | + | chr1_1:2086777-2086796 | None:intergenic | 35.0% |
| ! | GATATTGCTGTTAACTTCAC+AGG | - | chr1_1:2086995-2087014 | Msa0000790:three_prime_UTR | 35.0% |
| CATTGCAGATGGAATGTTTA+AGG | - | chr1_1:2087100-2087119 | Msa0000790:CDS | 35.0% | |
| !! | AACTGTTTTGAACAGAGCTT+GGG | - | chr1_1:2087163-2087182 | Msa0000790:intron | 35.0% |
| !!! | GGAAGACTTTTTTGTACTGT+TGG | - | chr1_1:2087450-2087469 | Msa0000790:intron | 35.0% |
| AAATCAACCTTGCAATGTGT+TGG | + | chr1_1:2087483-2087502 | None:intergenic | 35.0% | |
| !! | TATTTTTACCTGCAGTGGTT+TGG | - | chr1_1:2087518-2087537 | Msa0000790:intron | 35.0% |
| !!! | GTGACTTGGTGTTTTGATTT+AGG | - | chr1_1:2087559-2087578 | Msa0000790:intron | 35.0% |
| ATTTAGGAATTTGAGGAGAG+TGG | - | chr1_1:2087575-2087594 | Msa0000790:intron | 35.0% | |
| !!! | AGATCCAGAAAAGCATTTTC+AGG | - | chr1_1:2087598-2087617 | Msa0000790:intron | 35.0% |
| ! | AGATCCTGAAAATGCTTTTC+TGG | + | chr1_1:2087605-2087624 | None:intergenic | 35.0% |
| !! | TCTTTTGTCATTGGCTAAAG+AGG | - | chr1_1:2087622-2087641 | Msa0000790:CDS | 35.0% |
| !! | CTTTTGTCATTGGCTAAAGA+GGG | - | chr1_1:2087623-2087642 | Msa0000790:CDS | 35.0% |
| !! | TGTTGTTGTTTGTGAATGCT+AGG | - | chr1_1:2088072-2088091 | Msa0000790:intron | 35.0% |
| TGGTTGAGAAACATAAAGAC+AGG | - | chr1_1:2088183-2088202 | Msa0000790:intron | 35.0% | |
| GAGAAATGAACTTGATCGTA+AGG | - | chr1_1:2088300-2088319 | Msa0000790:intron | 35.0% | |
| !! | CTACTCGTTTTGATGGATAT+CGG | + | chr1_1:2088408-2088427 | None:intergenic | 35.0% |
| !! | AATCACTTTGGGATGTGAAA+TGG | - | chr1_1:2088527-2088546 | Msa0000790:intron | 35.0% |
| ! | TACTTTTATGACAGGTTCTC+TGG | - | chr1_1:2088562-2088581 | Msa0000790:intron | 35.0% |
| CATACTACCGGTAAATGAAT+GGG | + | chr1_1:2088596-2088615 | None:intergenic | 35.0% | |
| AATGCAATCATCCATACTAC+CGG | + | chr1_1:2088608-2088627 | None:intergenic | 35.0% | |
| ! | ATACTAGGGTGCCTTAAAAT+AGG | + | chr1_1:2088699-2088718 | None:intergenic | 35.0% |
| GACAAAGATAGACATGTGAA+TGG | - | chr1_1:2088868-2088887 | Msa0000790:CDS | 35.0% | |
| TCAATCATCATTCTCTCAAC+AGG | + | chr1_1:2089026-2089045 | None:intergenic | 35.0% | |
| GTATTCTTGATTTCGCAGTA+GGG | + | chr1_1:2089059-2089078 | None:intergenic | 35.0% | |
| AGTATTCTTGATTTCGCAGT+AGG | + | chr1_1:2089060-2089079 | None:intergenic | 35.0% | |
| GAAATCAAGAATACTCATGC+CGG | - | chr1_1:2089065-2089084 | Msa0000790:intron | 35.0% | |
| !! | CATGGTTTTGCTTATCAATG+TGG | - | chr1_1:2089192-2089211 | Msa0000790:intron | 35.0% |
| ATCAATGTGGCAATACTTCA+AGG | - | chr1_1:2089205-2089224 | Msa0000790:intron | 35.0% | |
| ! | TATGTTACCTGCAAGTATTG+TGG | + | chr1_1:2089441-2089460 | None:intergenic | 35.0% |
| CATTGATCCTATGTGTTTGT+TGG | - | chr1_1:2089511-2089530 | Msa0000790:intron | 35.0% | |
| ! | TCTTTTCCCAACAAACACAT+AGG | + | chr1_1:2089521-2089540 | None:intergenic | 35.0% |
| TAAATAGGAACACCTACTGA+CGG | - | chr1_1:2089571-2089590 | Msa0000790:CDS | 35.0% | |
| AATTTGGTCCAGCCTAAATT+TGG | + | chr1_1:2089621-2089640 | None:intergenic | 35.0% | |
| CCACTAGTCAGATTCAAATT+TGG | + | chr1_1:2089637-2089656 | None:intergenic | 35.0% | |
| CCAAATTTGAATCTGACTAG+TGG | - | chr1_1:2089634-2089653 | Msa0000790:intron | 35.0% | |
| ACTCTTGGCATCTAATAACT+AGG | + | chr1_1:2089711-2089730 | None:intergenic | 35.0% | |
| !! | GGCATAACAATTGACTCTTT+TGG | - | chr1_1:2089829-2089848 | Msa0000790:CDS | 35.0% |
| ! | CTGCAAAGCAATATTTTCCT+TGG | + | chr1_1:2089915-2089934 | None:intergenic | 35.0% |
| CAAGGAAAATATTGCTTTGC+AGG | - | chr1_1:2089913-2089932 | Msa0000790:CDS | 35.0% | |
| GTAATCTCTCTCAAGAATTG+GGG | + | chr1_1:2090075-2090094 | None:intergenic | 35.0% | |
| GTGTAATCTCTCTCAAGAAT+TGG | + | chr1_1:2090077-2090096 | None:intergenic | 35.0% | |
| !!! | TGTTTTTACTGCTACTTTGC+GGG | - | chr1_1:2090122-2090141 | Msa0000790:intron | 35.0% |
| AAACTATTAGAACTGCCCAT+TGG | + | chr1_1:2090285-2090304 | None:intergenic | 35.0% | |
| ! | TTTTGCTTACAAGGATGCAT+TGG | - | chr1_1:2090303-2090322 | Msa0000790:five_prime_UTR | 35.0% |
| CACTTCATCTTCTTCTTCTG+TGG | - | chr1_1:2086786-2086805 | Msa0000790:three_prime_UTR | 40.0% | |
| CAAGCTCTGTTCAAAACAGT+TGG | + | chr1_1:2087164-2087183 | None:intergenic | 40.0% | |
| !! | CAACTGTTTTGAACAGAGCT+TGG | - | chr1_1:2087162-2087181 | Msa0000790:intron | 40.0% |
| ATCCACCAGTTACGATGATT+CGG | + | chr1_1:2087202-2087221 | None:intergenic | 40.0% | |
| CAAACCATCAGTTTCAGCAA+TGG | + | chr1_1:2087252-2087271 | None:intergenic | 40.0% | |
| !! | TTCGGTATTTTTACCTGCAG+TGG | - | chr1_1:2087513-2087532 | Msa0000790:intron | 40.0% |
| GCTAAAGAGGGAATTCAGAA+AGG | - | chr1_1:2087635-2087654 | Msa0000790:CDS | 40.0% | |
| AGAGGGAATTCAGAAAGGAA+AGG | - | chr1_1:2087640-2087659 | Msa0000790:CDS | 40.0% | |
| GATTCAGAACTATGTGGATC+TGG | + | chr1_1:2087738-2087757 | None:intergenic | 40.0% | |
| !! | AGTGTGGATTAGACTATGAC+CGG | - | chr1_1:2087928-2087947 | Msa0000790:CDS | 40.0% |
| AGCTGCAGATTTCTGTGAAA+TGG | - | chr1_1:2088163-2088182 | Msa0000790:intron | 40.0% | |
| AAAATGATAGGCTAGGCAAG+AGG | + | chr1_1:2088271-2088290 | None:intergenic | 40.0% | |
| !! | TCTTTCAAGTTTGGGAGTTG+AGG | - | chr1_1:2088363-2088382 | Msa0000790:intron | 40.0% |
| !! | CTTTCAAGTTTGGGAGTTGA+GGG | - | chr1_1:2088364-2088383 | Msa0000790:intron | 40.0% |
| ! | CTCAATGCTACTCGTTTTGA+TGG | + | chr1_1:2088415-2088434 | None:intergenic | 40.0% |
| CATCAAAACGAGTAGCATTG+AGG | - | chr1_1:2088413-2088432 | Msa0000790:CDS | 40.0% | |
| AAGCGTGTATATCAGGTATG+AGG | + | chr1_1:2088458-2088477 | None:intergenic | 40.0% | |
| ! | TTTTATGACAGGTTCTCTGG+TGG | - | chr1_1:2088565-2088584 | Msa0000790:intron | 40.0% |
| CCATACTACCGGTAAATGAA+TGG | + | chr1_1:2088597-2088616 | None:intergenic | 40.0% | |
| CCATTCATTTACCGGTAGTA+TGG | - | chr1_1:2088594-2088613 | Msa0000790:intron | 40.0% | |
| ! | TAGGGTGCCTTAAAATAGGT+TGG | + | chr1_1:2088695-2088714 | None:intergenic | 40.0% |
| TGAGAACCTTGATGTTGTCA+AGG | - | chr1_1:2088995-2089014 | Msa0000790:intron | 40.0% | |
| GAGAACCTTGATGTTGTCAA+GGG | - | chr1_1:2088996-2089015 | Msa0000790:intron | 40.0% | |
| GAATACCCTTGACAACATCA+AGG | + | chr1_1:2089004-2089023 | None:intergenic | 40.0% | |
| AAGAATACTCATGCCGGAAT+AGG | - | chr1_1:2089071-2089090 | Msa0000790:intron | 40.0% | |
| ! | GCCTTGTTCAGTTAGGTAAA+TGG | - | chr1_1:2089169-2089188 | Msa0000790:intron | 40.0% |
| GCCATTTACCTAACTGAACA+AGG | + | chr1_1:2089173-2089192 | None:intergenic | 40.0% | |
| GTTCAGTTAGGTAAATGGCA+TGG | - | chr1_1:2089174-2089193 | Msa0000790:intron | 40.0% | |
| CTGATTGACTGTAATGTTCC+AGG | - | chr1_1:2089347-2089366 | Msa0000790:intron | 40.0% | |
| !! | TGTAAAGGCATCAATGACGT+GGG | - | chr1_1:2089394-2089413 | Msa0000790:intron | 40.0% |
| CATTGTACCACAATACTTGC+AGG | - | chr1_1:2089431-2089450 | Msa0000790:CDS | 40.0% | |
| ! | GTGATCACTTGCATTGGTAA+CGG | + | chr1_1:2089482-2089501 | None:intergenic | 40.0% |
| CTACAAGTGATCACTTGCAT+TGG | + | chr1_1:2089488-2089507 | None:intergenic | 40.0% | |
| AAATAGGAACACCTACTGAC+GGG | - | chr1_1:2089572-2089591 | Msa0000790:CDS | 40.0% | |
| AATTTGGCACAGGTCAAGAT+GGG | + | chr1_1:2089605-2089624 | None:intergenic | 40.0% | |
| AAATTTGGCACAGGTCAAGA+TGG | + | chr1_1:2089606-2089625 | None:intergenic | 40.0% | |
| TCTTGACCTGTGCCAAATTT+AGG | - | chr1_1:2089606-2089625 | Msa0000790:intron | 40.0% | |
| ! | TTTGAATCTGACTAGTGGGT+TGG | - | chr1_1:2089639-2089658 | Msa0000790:intron | 40.0% |
| TAGATGCCAAGAGTCTTGAT+TGG | - | chr1_1:2089717-2089736 | Msa0000790:intron | 40.0% | |
| CTACAGGAGAAAAGGATCGA+TGG | + | chr1_1:2086830-2086849 | None:intergenic | 45.0% | |
| ! | GATCCTTTTCTCCTGTAGTG+AGG | - | chr1_1:2086832-2086851 | Msa0000790:three_prime_UTR | 45.0% |
| TCACCTCACTACAGGAGAAA+AGG | + | chr1_1:2086838-2086857 | None:intergenic | 45.0% | |
| AAGCAGACATGGCAGCTATT+CGG | - | chr1_1:2086865-2086884 | Msa0000790:three_prime_UTR | 45.0% | |
| ATGGCAGCTATTCGGATGAT+AGG | - | chr1_1:2086873-2086892 | Msa0000790:three_prime_UTR | 45.0% | |
| GTTCACCGAATCATCGTAAC+TGG | - | chr1_1:2087194-2087213 | Msa0000790:intron | 45.0% | |
| TGGATCCCTTCAGGAATCAA+GGG | - | chr1_1:2087217-2087236 | Msa0000790:intron | 45.0% | |
| AGCTTCCCTTGATTCCTGAA+GGG | + | chr1_1:2087225-2087244 | None:intergenic | 45.0% | |
| CTTGCCATTGCTGAAACTGA+TGG | - | chr1_1:2087245-2087264 | Msa0000790:intron | 45.0% | |
| TGTGCATCCAACACATTGCA+AGG | - | chr1_1:2087473-2087492 | Msa0000790:intron | 45.0% | |
| ! | TTTACCTGCAGTGGTTTGGA+TGG | - | chr1_1:2087522-2087541 | Msa0000790:intron | 45.0% |
| GTAACTAGATGTGCTTGAGC+AGG | - | chr1_1:2087712-2087731 | Msa0000790:intron | 45.0% | |
| ATATGCAAGGTGGTTGCAGT+TGG | - | chr1_1:2087903-2087922 | Msa0000790:CDS | 45.0% | |
| ! | TACCTCTTTTGAATCTCGGC+GGG | + | chr1_1:2087966-2087985 | None:intergenic | 45.0% |
| ! | GTACCTCTTTTGAATCTCGG+CGG | + | chr1_1:2087967-2087986 | None:intergenic | 45.0% |
| GCTCGCATGTGCAAAAACAT+AGG | + | chr1_1:2088140-2088159 | None:intergenic | 45.0% | |
| ! | GGTGTCACCCATTCATTTAC+CGG | - | chr1_1:2088586-2088605 | Msa0000790:intron | 45.0% |
| !! | CACATTTCTGGTACACTGAC+AGG | - | chr1_1:2088945-2088964 | Msa0000790:intron | 45.0% |
| GGTACACTGACAGGCATAAA+TGG | - | chr1_1:2088954-2088973 | Msa0000790:intron | 45.0% | |
| !! | GCAATGAGCCTTGTTCAGTT+AGG | - | chr1_1:2089162-2089181 | Msa0000790:intron | 45.0% |
| ATGTTCCAGGCAAGTTCTTG+AGG | - | chr1_1:2089360-2089379 | Msa0000790:intron | 45.0% | |
| !! | CTGTAAAGGCATCAATGACG+TGG | - | chr1_1:2089393-2089412 | Msa0000790:intron | 45.0% |
| TGTGGTACAATGTTCTACCG+AGG | + | chr1_1:2089423-2089442 | None:intergenic | 45.0% | |
| ! | CAGGTAACATAGCTTGTCTC+TGG | - | chr1_1:2089450-2089469 | Msa0000790:CDS | 45.0% |
| ATGCCAAGAGTCTTGATTGG+TGG | - | chr1_1:2089720-2089739 | Msa0000790:intron | 45.0% | |
| AGTCCACCAATCAAGACTCT+TGG | + | chr1_1:2089726-2089745 | None:intergenic | 45.0% | |
| !! | TTGATTGGTGGACTGCATCT+TGG | - | chr1_1:2089732-2089751 | Msa0000790:intron | 45.0% |
| ! | GATGTTTTTCCCGCATGACT+TGG | - | chr1_1:2089935-2089954 | Msa0000790:intron | 45.0% |
| TCTCTCTCAAGAATTGGGGA+TGG | + | chr1_1:2090071-2090090 | None:intergenic | 45.0% | |
| TCGTTGCTTCACCTCACTAC+AGG | + | chr1_1:2086846-2086865 | None:intergenic | 50.0% | |
| GTGAAGCAACGAAGCAGACA+TGG | - | chr1_1:2086854-2086873 | Msa0000790:three_prime_UTR | 50.0% | |
| CACCGAATCATCGTAACTGG+TGG | - | chr1_1:2087197-2087216 | Msa0000790:intron | 50.0% | |
| GTGGATCCCTTCAGGAATCA+AGG | - | chr1_1:2087216-2087235 | Msa0000790:intron | 50.0% | |
| GAGCTTCCCTTGATTCCTGA+AGG | + | chr1_1:2087226-2087245 | None:intergenic | 50.0% | |
| ACTTCCATCCAAACCACTGC+AGG | + | chr1_1:2087529-2087548 | None:intergenic | 50.0% | |
| ! | ACCTCTTTTGAATCTCGGCG+GGG | + | chr1_1:2087965-2087984 | None:intergenic | 50.0% |
| TTCCAGGCAAGTTCTTGAGG+TGG | - | chr1_1:2089363-2089382 | Msa0000790:intron | 50.0% | |
| AACCACCTCAAGAACTTGCC+TGG | + | chr1_1:2089368-2089387 | None:intergenic | 50.0% | |
| CAAGTTCTTGAGGTGGTTGC+TGG | - | chr1_1:2089370-2089389 | Msa0000790:intron | 50.0% | |
| ATCAATGACGTGGGTAGCCT+CGG | - | chr1_1:2089403-2089422 | Msa0000790:CDS | 50.0% | |
| GACCTGTGCCAAATTTAGGC+TGG | - | chr1_1:2089610-2089629 | Msa0000790:intron | 50.0% | |
| GTCCAGCCTAAATTTGGCAC+AGG | + | chr1_1:2089615-2089634 | None:intergenic | 50.0% | |
| TTGAACAGAGCTTGGGCTGC+TGG | - | chr1_1:2087170-2087189 | Msa0000790:intron | 55.0% | |
| ! | CGTAACTGGTGGATCCCTTC+AGG | - | chr1_1:2087208-2087227 | Msa0000790:intron | 55.0% |
| GTGGTTGCAGTTGGAGAGTG+TGG | - | chr1_1:2087912-2087931 | Msa0000790:CDS | 55.0% | |
| ! | GAGGTGGTTGCTGGCTGTAA+AGG | - | chr1_1:2089379-2089398 | Msa0000790:intron | 55.0% |
| CCGCAGAATCCAAGTCATGC+GGG | + | chr1_1:2089947-2089966 | None:intergenic | 55.0% | |
| ! | CCCGCATGACTTGGATTCTG+CGG | - | chr1_1:2089944-2089963 | Msa0000790:intron | 55.0% |
| GCCGCAGAATCCAAGTCATG+CGG | + | chr1_1:2089948-2089967 | None:intergenic | 55.0% | |
| ! | GCGGCTGATGCTCTTTTAGC+TGG | - | chr1_1:2089963-2089982 | Msa0000790:intron | 55.0% |
| CGGCGGGGCAAAAATGAAGC+CGG | + | chr1_1:2087950-2087969 | None:intergenic | 60.0% | |
| GCCCCGCCGAGATTCAAAAG+AGG | - | chr1_1:2087961-2087980 | Msa0000790:CDS | 60.0% | |
| TGGGATTCACGCCCGTCAGT+AGG | + | chr1_1:2089586-2089605 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 2086725 | 2090332 | 2086725 | ID=Msa0000790;Name=Msa0000790 |
| chr1_1 | mRNA | 2086725 | 2090332 | 2086725 | ID=Msa0000790-mRNA-1;Parent=Msa0000790;Name=Msa0000790-mRNA-1;_AED=0.13;_eAED=0.13;_QI=148|1|1|1|1|1|11|331|319 |
| chr1_1 | exon | 2086725 | 2087122 | 2086725 | ID=Msa0000790-mRNA-1:exon:448;Parent=Msa0000790-mRNA-1 |
| chr1_1 | exon | 2087605 | 2087688 | 2087605 | ID=Msa0000790-mRNA-1:exon:447;Parent=Msa0000790-mRNA-1 |
| chr1_1 | exon | 2087874 | 2088090 | 2087874 | ID=Msa0000790-mRNA-1:exon:446;Parent=Msa0000790-mRNA-1 |
| chr1_1 | exon | 2088399 | 2088481 | 2088399 | ID=Msa0000790-mRNA-1:exon:445;Parent=Msa0000790-mRNA-1 |
| chr1_1 | exon | 2088853 | 2088963 | 2088853 | ID=Msa0000790-mRNA-1:exon:444;Parent=Msa0000790-mRNA-1 |
| chr1_1 | exon | 2089075 | 2089145 | 2089075 | ID=Msa0000790-mRNA-1:exon:443;Parent=Msa0000790-mRNA-1 |
| chr1_1 | exon | 2089396 | 2089476 | 2089396 | ID=Msa0000790-mRNA-1:exon:442;Parent=Msa0000790-mRNA-1 |
| chr1_1 | exon | 2089563 | 2089606 | 2089563 | ID=Msa0000790-mRNA-1:exon:441;Parent=Msa0000790-mRNA-1 |
| chr1_1 | exon | 2089791 | 2089949 | 2089791 | ID=Msa0000790-mRNA-1:exon:440;Parent=Msa0000790-mRNA-1 |
| chr1_1 | exon | 2090041 | 2090061 | 2090041 | ID=Msa0000790-mRNA-1:exon:439;Parent=Msa0000790-mRNA-1 |
| chr1_1 | exon | 2090163 | 2090332 | 2090163 | ID=Msa0000790-mRNA-1:exon:438;Parent=Msa0000790-mRNA-1 |
| chr1_1 | five_prime_UTR | 2090185 | 2090332 | 2090185 | ID=Msa0000790-mRNA-1:five_prime_utr;Parent=Msa0000790-mRNA-1 |
| chr1_1 | CDS | 2090163 | 2090184 | 2090163 | ID=Msa0000790-mRNA-1:cds;Parent=Msa0000790-mRNA-1 |
| chr1_1 | CDS | 2090041 | 2090061 | 2090041 | ID=Msa0000790-mRNA-1:cds;Parent=Msa0000790-mRNA-1 |
| chr1_1 | CDS | 2089791 | 2089949 | 2089791 | ID=Msa0000790-mRNA-1:cds;Parent=Msa0000790-mRNA-1 |
| chr1_1 | CDS | 2089563 | 2089606 | 2089563 | ID=Msa0000790-mRNA-1:cds;Parent=Msa0000790-mRNA-1 |
| chr1_1 | CDS | 2089396 | 2089476 | 2089396 | ID=Msa0000790-mRNA-1:cds;Parent=Msa0000790-mRNA-1 |
| chr1_1 | CDS | 2089075 | 2089145 | 2089075 | ID=Msa0000790-mRNA-1:cds;Parent=Msa0000790-mRNA-1 |
| chr1_1 | CDS | 2088853 | 2088963 | 2088853 | ID=Msa0000790-mRNA-1:cds;Parent=Msa0000790-mRNA-1 |
| chr1_1 | CDS | 2088399 | 2088481 | 2088399 | ID=Msa0000790-mRNA-1:cds;Parent=Msa0000790-mRNA-1 |
| chr1_1 | CDS | 2087874 | 2088090 | 2087874 | ID=Msa0000790-mRNA-1:cds;Parent=Msa0000790-mRNA-1 |
| chr1_1 | CDS | 2087605 | 2087688 | 2087605 | ID=Msa0000790-mRNA-1:cds;Parent=Msa0000790-mRNA-1 |
| chr1_1 | CDS | 2087056 | 2087122 | 2087056 | ID=Msa0000790-mRNA-1:cds;Parent=Msa0000790-mRNA-1 |
| chr1_1 | three_prime_UTR | 2086725 | 2087055 | 2086725 | ID=Msa0000790-mRNA-1:three_prime_utr;Parent=Msa0000790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
