Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1118970 | XP_013450227.1 | 98.433 | 319 | 5 | 0 | 1 | 319 | 1 | 319 | 0.0 | 658 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1118970 | sp|Q640V9|TATD1_XENLA | 50.662 | 302 | 142 | 5 | 1 | 302 | 1 | 295 | 7.99e-109 | 321 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1118970 | A0A072UEM8 | 98.433 | 319 | 5 | 0 | 1 | 319 | 1 | 319 | 0.0 | 658 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000790 | Msa1118970 | 0.937303 | 4.313421e-98 | -8.615850e-47 |
| Msa1080830 | Msa1118970 | 0.890380 | 1.038534e-73 | -8.615850e-47 |
| Msa1118970 | Msa1420530 | 0.903489 | 3.290427e-79 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1118970 | MtrunA17_Chr7g0267561 | 98.433 | 319 | 5 | 0 | 1 | 319 | 1 | 319 | 0.0 | 658 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1118970 | AT3G52390.1 | 80.878 | 319 | 61 | 0 | 1 | 319 | 1 | 319 | 0.0 | 556 |
| Msa1118970 | AT3G52390.2 | 80.124 | 322 | 61 | 1 | 1 | 319 | 1 | 322 | 0.0 | 550 |
Find 82 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTGCAGATGGAATGTTTA+AGG | 0.179710 | 7_3:+67807706 | Msa1118970:intron |
| CCATTCATTTACCGGTAGTA+TGG | 0.274416 | 7_3:+67809199 | Msa1118970:CDS |
| GGTACACTGACAGGCATAAA+TGG | 0.296686 | 7_3:+67809559 | Msa1118970:intron |
| TACTTCTCTTTCTTCTTAGA+AGG | 0.309073 | 7_3:-67809718 | None:intergenic |
| CAAGTTCTTGAGGTGGTTGC+TGG | 0.314482 | 7_3:+67809975 | Msa1118970:CDS |
| GTGTAATCTCTCTCAAGAAT+TGG | 0.339719 | 7_3:-67810679 | None:intergenic |
| TGTAATCTCTCTCAAGAATT+GGG | 0.341746 | 7_3:-67810678 | None:intergenic |
| AAACAAAACTATTATGATAA+AGG | 0.353733 | 7_3:+67810862 | Msa1118970:three_prime_UTR |
| AGATTTAACAAAACCTATTC+CGG | 0.363419 | 7_3:-67809689 | None:intergenic |
| CGTAACTGGTGGATCCCTTC+AGG | 0.367497 | 7_3:+67807814 | Msa1118970:CDS |
| AAGAATACTCATGCCGGAAT+AGG | 0.370394 | 7_3:+67809676 | Msa1118970:CDS |
| TGTTTACGATATAAAATTGT+TGG | 0.376504 | 7_3:+67807319 | None:intergenic |
| TTGAACAGAGCTTGGGCTGC+TGG | 0.381184 | 7_3:+67807776 | Msa1118970:CDS |
| TCAATCATCATTCTCTCAAC+AGG | 0.397537 | 7_3:-67809628 | None:intergenic |
| GGTGTCACCCATTCATTTAC+CGG | 0.403791 | 7_3:+67809191 | Msa1118970:CDS |
| ATTGCAGATGGAATGTTTAA+GGG | 0.415859 | 7_3:+67807707 | Msa1118970:intron |
| CCATACTACCGGTAAATGAA+TGG | 0.419461 | 7_3:-67809199 | None:intergenic |
| ATTTAGGAATTTGAGGAGAG+TGG | 0.434545 | 7_3:+67808180 | Msa1118970:intron |
| GTTCACCGAATCATCGTAAC+TGG | 0.440208 | 7_3:+67807800 | Msa1118970:CDS |
| GTTTACGATATAAAATTGTT+GGG | 0.441361 | 7_3:+67807320 | None:intergenic |
| GATATTGCTGTTAACTTCAC+AGG | 0.448944 | 7_3:+67807601 | Msa1118970:intron |
| CATTGTACCACAATACTTGC+AGG | 0.449225 | 7_3:+67810036 | Msa1118970:CDS |
| AAGCAGACATGGCAGCTATT+CGG | 0.450967 | 7_3:+67807471 | Msa1118970:exon |
| ATATAAAATTGTTGGGGTGT+TGG | 0.451544 | 7_3:+67807327 | None:intergenic |
| AGCTGCAGATTTCTGTGAAA+TGG | 0.453615 | 7_3:+67808768 | Msa1118970:CDS |
| ATGGCAGCTATTCGGATGAT+AGG | 0.456359 | 7_3:+67807479 | Msa1118970:CDS |
| AGTATTCTTGATTTCGCAGT+AGG | 0.457640 | 7_3:-67809662 | None:intergenic |
| CACTTCATCTTCTTCTTCTG+TGG | 0.463893 | 7_3:+67807392 | Msa1118970:five_prime_UTR |
| GTGGATCCCTTCAGGAATCA+AGG | 0.468309 | 7_3:+67807822 | Msa1118970:CDS |
| GAGGTGGTTGCTGGCTGTAA+AGG | 0.472385 | 7_3:+67809984 | Msa1118970:CDS |
| GCAATGAGCCTTGTTCAGTT+AGG | 0.474293 | 7_3:+67809767 | Msa1118970:CDS |
| TCGTTGCTTCACCTCACTAC+AGG | 0.480936 | 7_3:-67807449 | None:intergenic |
| CTTGCCATTGCTGAAACTGA+TGG | 0.480998 | 7_3:+67807851 | Msa1118970:CDS |
| AAGATGAAGTGCTGAACATT+CGG | 0.482462 | 7_3:-67807380 | None:intergenic |
| ATCCACCAGTTACGATGATT+CGG | 0.484521 | 7_3:-67807805 | None:intergenic |
| TCACCTCACTACAGGAGAAA+AGG | 0.489765 | 7_3:-67807441 | None:intergenic |
| TATTATGATAAAGGTTCCAA+TGG | 0.499165 | 7_3:+67810871 | Msa1118970:three_prime_UTR |
| ATATGCAAGGTGGTTGCAGT+TGG | 0.510781 | 7_3:+67808508 | Msa1118970:intron |
| GGTGTTGGTATTAAATAGTG+AGG | 0.512050 | 7_3:+67807342 | Msa1118970:five_prime_UTR |
| ATCAATGACGTGGGTAGCCT+CGG | 0.515221 | 7_3:+67810008 | Msa1118970:CDS |
| CATACTACCGGTAAATGAAT+GGG | 0.528644 | 7_3:-67809198 | None:intergenic |
| GAGCTTCCCTTGATTCCTGA+AGG | 0.541070 | 7_3:-67807829 | None:intergenic |
| AAATCAACCTTGCAACGTGT+TGG | 0.542834 | 7_3:-67808085 | None:intergenic |
| CCCGCATGACTTGGATTCTG+CGG | 0.544613 | 7_3:+67810549 | Msa1118970:CDS |
| ATGTTCCAGGCAAGTTCTTG+AGG | 0.547709 | 7_3:+67809965 | Msa1118970:intron |
| ATTATGATAAAGGTTCCAAT+GGG | 0.559221 | 7_3:+67810872 | Msa1118970:three_prime_UTR |
| GTGGTTGCAGTTGGAGAGTG+TGG | 0.563440 | 7_3:+67808517 | Msa1118970:CDS |
| GCCCCGCCGAGATTCAAAAG+AGG | 0.565535 | 7_3:+67808566 | Msa1118970:CDS |
| TGAGAACCTTGATGTTGTCA+AGG | 0.568216 | 7_3:+67809600 | Msa1118970:CDS |
| GTGAAGCAACGAAGCAGACA+TGG | 0.571755 | 7_3:+67807460 | Msa1118970:exon |
| CAAGCTCTGTTCAAAACAGT+TGG | 0.572850 | 7_3:-67807767 | None:intergenic |
| CTGTAAAGGCATCAATGACG+TGG | 0.573785 | 7_3:+67809998 | Msa1118970:CDS |
| TCATTTGATAAAATGTACAT+TGG | 0.575483 | 7_3:+67809242 | Msa1118970:CDS |
| GCTAAAGAGGGAATTCAGAA+AGG | 0.576535 | 7_3:+67808240 | Msa1118970:CDS |
| AATGCAATCATCCATACTAC+CGG | 0.579184 | 7_3:-67809210 | None:intergenic |
| GATCAAGATTGTATTGTCAA+AGG | 0.580228 | 7_3:+67809742 | Msa1118970:CDS |
| AGCTTCCCTTGATTCCTGAA+GGG | 0.580403 | 7_3:-67807828 | None:intergenic |
| AGTGTGGATTAGACTATGAC+CGG | 0.580933 | 7_3:+67808533 | Msa1118970:CDS |
| TTTACGATATAAAATTGTTG+GGG | 0.581314 | 7_3:+67807321 | None:intergenic |
| TTCCAGGCAAGTTCTTGAGG+TGG | 0.584211 | 7_3:+67809968 | Msa1118970:intron |
| CTACAGGAGAAAAGGATCGA+TGG | 0.585562 | 7_3:-67807433 | None:intergenic |
| AAACTATTAGAACTGCCCAT+TGG | 0.586072 | 7_3:-67810887 | None:intergenic |
| CCGCAGAATCCAAGTCATGC+GGG | 0.587287 | 7_3:-67810549 | None:intergenic |
| GAAATCAAGAATACTCATGC+CGG | 0.587360 | 7_3:+67809670 | Msa1118970:CDS |
| TGGTTGAGAAACATAAAGAC+AGG | 0.587924 | 7_3:+67808788 | Msa1118970:CDS |
| CACCGAATCATCGTAACTGG+TGG | 0.594177 | 7_3:+67807803 | Msa1118970:CDS |
| GTATTCTTGATTTCGCAGTA+GGG | 0.599813 | 7_3:-67809661 | None:intergenic |
| AGAGGGAATTCAGAAAGGAA+AGG | 0.606009 | 7_3:+67808245 | Msa1118970:CDS |
| TCTCTCTCAAGAATTGGGGA+TGG | 0.610326 | 7_3:-67810673 | None:intergenic |
| TGGATCCCTTCAGGAATCAA+GGG | 0.611907 | 7_3:+67807823 | Msa1118970:CDS |
| GCCATTTACCTAACTGAACA+AGG | 0.612592 | 7_3:-67809775 | None:intergenic |
| TGTGCATCCAACACGTTGCA+AGG | 0.614854 | 7_3:+67808078 | Msa1118970:CDS |
| GCCGCAGAATCCAAGTCATG+CGG | 0.616525 | 7_3:-67810550 | None:intergenic |
| GAGAACCTTGATGTTGTCAA+GGG | 0.622857 | 7_3:+67809601 | Msa1118970:CDS |
| GTAATCTCTCTCAAGAATTG+GGG | 0.629460 | 7_3:-67810677 | None:intergenic |
| ATGTTTAAGGGAATCTACAA+TGG | 0.631092 | 7_3:+67807719 | Msa1118970:CDS |
| GAATACCCTTGACAACATCA+AGG | 0.648280 | 7_3:-67809606 | None:intergenic |
| TATGTTACCTGCAAGTATTG+TGG | 0.653280 | 7_3:-67810043 | None:intergenic |
| CAAACCATCAGTTTCAGCAA+TGG | 0.654081 | 7_3:-67807855 | None:intergenic |
| GTGTTGGTATTAAATAGTGA+GGG | 0.656889 | 7_3:+67807343 | Msa1118970:five_prime_UTR |
| TGTAAAGGCATCAATGACGT+GGG | 0.682265 | 7_3:+67809999 | Msa1118970:CDS |
| TGTGGTACAATGTTCTACCG+AGG | 0.707211 | 7_3:-67810025 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAATTATCATCAAAATT+AGG | - | chr7_3:67808016-67808035 | None:intergenic | 10.0% |
| !!! | AGTTTAATATTTTTTAAACA+GGG | - | chr7_3:67808635-67808654 | None:intergenic | 10.0% |
| !!! | TAGTTTAATATTTTTTAAAC+AGG | - | chr7_3:67808636-67808655 | None:intergenic | 10.0% |
| !!! | GTTTAATATTTTTTAAACAG+GGG | - | chr7_3:67808634-67808653 | None:intergenic | 15.0% |
| !!! | GAATATTTAAGATTTCAAAA+TGG | - | chr7_3:67808832-67808851 | None:intergenic | 15.0% |
| !! | AATCTTAAATATTCAAACAA+TGG | + | chr7_3:67808838-67808857 | Msa1118970:intron | 15.0% |
| !! | CTGATTATAAAAAGATAAAT+AGG | + | chr7_3:67810161-67810180 | Msa1118970:intron | 15.0% |
| !!! | TATCATAATAGTTTTGTTTT+TGG | - | chr7_3:67810861-67810880 | None:intergenic | 15.0% |
| !! | AAACAAAACTATTATGATAA+AGG | + | chr7_3:67810862-67810881 | Msa1118970:three_prime_UTR | 15.0% |
| !! | TGCATTTAATAAGTTGTTTA+TGG | + | chr7_3:67807982-67808001 | Msa1118970:intron | 20.0% |
| !! | ATAAGTTGTTTATGGAAATA+TGG | + | chr7_3:67807990-67808009 | Msa1118970:intron | 20.0% |
| !!! | TATTTCTAAAAATGCTTACT+TGG | - | chr7_3:67808464-67808483 | None:intergenic | 20.0% |
| !!! | TTTTTTCTTTTTCATATGCA+AGG | + | chr7_3:67808495-67808514 | Msa1118970:intron | 20.0% |
| !! | CTCAAAATGAATAAAATGAT+AGG | - | chr7_3:67808888-67808907 | None:intergenic | 20.0% |
| !! | TCATTTGATAAAATGTACAT+TGG | + | chr7_3:67809242-67809261 | Msa1118970:CDS | 20.0% |
| !!! | ATCTAAAATTAGACATACTA+GGG | - | chr7_3:67809318-67809337 | None:intergenic | 20.0% |
| !!! | AATCTAAAATTAGACATACT+AGG | - | chr7_3:67809319-67809338 | None:intergenic | 20.0% |
| !!! | TTTACTTGTGGTTATATTTT+TGG | - | chr7_3:67809350-67809369 | None:intergenic | 20.0% |
| !! | TTAAAAGATGAACTTACTTT+AGG | + | chr7_3:67809403-67809422 | Msa1118970:intron | 20.0% |
| !! | TATCATTTATGGAATTTAAC+TGG | - | chr7_3:67809530-67809549 | None:intergenic | 20.0% |
| !! | AAGATTAACAATCATATACA+GGG | - | chr7_3:67809894-67809913 | None:intergenic | 20.0% |
| !! | AAAGATTAACAATCATATAC+AGG | - | chr7_3:67809895-67809914 | None:intergenic | 20.0% |
| !!! | GATAGTCATTTAAAATATGA+AGG | - | chr7_3:67809920-67809939 | None:intergenic | 20.0% |
| !! | TTAATATGCTAATGTTTGAT+TGG | + | chr7_3:67810413-67810432 | Msa1118970:intron | 20.0% |
| !! | TTTATCAAACACTTTGTTTG+CGG | + | chr7_3:67807636-67807655 | Msa1118970:intron | 25.0% |
| ! | TATTTCAAAATCATTGCAGA+TGG | + | chr7_3:67807695-67807714 | Msa1118970:intron | 25.0% |
| ! | TTGATTGATTGTTTGATCAT+AGG | + | chr7_3:67808034-67808053 | Msa1118970:intron | 25.0% |
| !!! | GTTGATTTTCTTTACTCTTT+CGG | + | chr7_3:67808100-67808119 | Msa1118970:intron | 25.0% |
| !!! | TGTTTTGATTTAGGAATTTG+AGG | + | chr7_3:67808173-67808192 | Msa1118970:intron | 25.0% |
| ! | CTGAATCTTGATTTCTTAAT+TGG | + | chr7_3:67808356-67808375 | Msa1118970:intron | 25.0% |
| ! | TACATGAATAACAACATACA+TGG | - | chr7_3:67808405-67808424 | None:intergenic | 25.0% |
| !!! | TTTTGAGAAGCAATTTGAAT+TGG | + | chr7_3:67808702-67808721 | Msa1118970:CDS | 25.0% |
| ! | AATGAATAAAATGATAGGCT+AGG | - | chr7_3:67808883-67808902 | None:intergenic | 25.0% |
| !!! | TTGTTTACTCTTTCAAGTTT+GGG | + | chr7_3:67808960-67808979 | Msa1118970:intron | 25.0% |
| ! | ATTTGTTTGCTTGTAATTGA+TGG | + | chr7_3:67809106-67809125 | Msa1118970:intron | 25.0% |
| !!! | ATTGTTTCTACTTTTATGAC+AGG | + | chr7_3:67809159-67809178 | Msa1118970:intron | 25.0% |
| !! | TTAAAATAGGTTGGCAAATA+TGG | - | chr7_3:67809291-67809310 | None:intergenic | 25.0% |
| !! | ATATTTGCCAACCTATTTTA+AGG | + | chr7_3:67809290-67809309 | Msa1118970:intron | 25.0% |
| !!! | TTGTGGTTATATTTTTGGAA+AGG | - | chr7_3:67809345-67809364 | None:intergenic | 25.0% |
| !! | AAGTTCATCTTTTAATCTCT+AGG | - | chr7_3:67809398-67809417 | None:intergenic | 25.0% |
| ! | AGATTTAACAAAACCTATTC+CGG | - | chr7_3:67809692-67809711 | None:intergenic | 25.0% |
| !!! | TAGGTTTTGTTAAATCTACA+TGG | + | chr7_3:67809695-67809714 | Msa1118970:CDS | 25.0% |
| ! | TGAAAAACTGATAAAACATC+AGG | - | chr7_3:67810270-67810289 | None:intergenic | 25.0% |
| !!! | AGTTTTTCAACGAACTTAAA+TGG | + | chr7_3:67810281-67810300 | Msa1118970:intron | 25.0% |
| ! | TATTATGATAAAGGTTCCAA+TGG | + | chr7_3:67810871-67810890 | Msa1118970:three_prime_UTR | 25.0% |
| ! | ATTATGATAAAGGTTCCAAT+GGG | + | chr7_3:67810872-67810891 | Msa1118970:three_prime_UTR | 25.0% |
| !! | TCTAATAGTTTTTGCTTACA+AGG | + | chr7_3:67810899-67810918 | Msa1118970:three_prime_UTR | 25.0% |
| ! | GTGTTGGTATTAAATAGTGA+GGG | + | chr7_3:67807343-67807362 | Msa1118970:five_prime_UTR | 30.0% |
| ATCAGTTAGTTACAGTTACA+GGG | - | chr7_3:67807543-67807562 | None:intergenic | 30.0% | |
| AATCAGTTAGTTACAGTTAC+AGG | - | chr7_3:67807544-67807563 | None:intergenic | 30.0% | |
| ATTGCAGATGGAATGTTTAA+GGG | + | chr7_3:67807707-67807726 | Msa1118970:intron | 30.0% | |
| ATGTTTAAGGGAATCTACAA+TGG | + | chr7_3:67807719-67807738 | Msa1118970:CDS | 30.0% | |
| AAGTGTTTGTAAATGTGACT+TGG | + | chr7_3:67808150-67808169 | Msa1118970:intron | 30.0% | |
| !! | TTTTCAGGATCTTTTGTCAT+TGG | + | chr7_3:67808218-67808237 | Msa1118970:CDS | 30.0% |
| AATCAAGATTCAGAACTATG+TGG | - | chr7_3:67808349-67808368 | None:intergenic | 30.0% | |
| !! | TTTCTTTTTCATATGCAAGG+TGG | + | chr7_3:67808498-67808517 | Msa1118970:intron | 30.0% |
| ! | TATGTACCTCTTTTGAATCT+CGG | - | chr7_3:67808575-67808594 | None:intergenic | 30.0% |
| AAAGTAACATGTATAGCAAC+AGG | - | chr7_3:67808605-67808624 | None:intergenic | 30.0% | |
| AGAAATGAACTTGATCGTAA+GGG | + | chr7_3:67808906-67808925 | Msa1118970:intron | 30.0% | |
| TAAACAACATAGCTAAGGTT+TGG | - | chr7_3:67808947-67808966 | None:intergenic | 30.0% | |
| AAGAGTAAACAACATAGCTA+AGG | - | chr7_3:67808952-67808971 | None:intergenic | 30.0% | |
| !! | GTTGTTTACTCTTTCAAGTT+TGG | + | chr7_3:67808959-67808978 | Msa1118970:intron | 30.0% |
| ATTTATGAAGCGTGTATATC+AGG | - | chr7_3:67809070-67809089 | None:intergenic | 30.0% | |
| ! | AATTGATGGCATAATCACTT+TGG | + | chr7_3:67809120-67809139 | Msa1118970:intron | 30.0% |
| ! | ATTGATGGCATAATCACTTT+GGG | + | chr7_3:67809121-67809140 | Msa1118970:intron | 30.0% |
| ! | TATGGTAATGCTTGAAAAGA+TGG | - | chr7_3:67809273-67809292 | None:intergenic | 30.0% |
| GCAAGATAAAAGTTTACTTG+TGG | - | chr7_3:67809362-67809381 | None:intergenic | 30.0% | |
| CCAGAAATGTGTATCATTTA+TGG | - | chr7_3:67809541-67809560 | None:intergenic | 30.0% | |
| CCATAAATGATACACATTTC+TGG | + | chr7_3:67809538-67809557 | Msa1118970:intron | 30.0% | |
| TACTTCTCTTTCTTCTTAGA+AGG | - | chr7_3:67809721-67809740 | None:intergenic | 30.0% | |
| GATCAAGATTGTATTGTCAA+AGG | + | chr7_3:67809742-67809761 | Msa1118970:CDS | 30.0% | |
| AGTCAATCAGACATATTTCT+AGG | - | chr7_3:67809942-67809961 | None:intergenic | 30.0% | |
| ATTGATCCTATGTGTTTGTT+GGG | + | chr7_3:67810117-67810136 | Msa1118970:intron | 30.0% | |
| CAAATTTGAATCTGACTAGT+GGG | + | chr7_3:67810240-67810259 | Msa1118970:intron | 30.0% | |
| !! | TTATATATTCTGAAGCTCCA+AGG | + | chr7_3:67810500-67810519 | Msa1118970:intron | 30.0% |
| TGTAATCTCTCTCAAGAATT+GGG | - | chr7_3:67810681-67810700 | None:intergenic | 30.0% | |
| ! | ACATTTTCAGATTCACTTCA+AGG | - | chr7_3:67810710-67810729 | None:intergenic | 30.0% |
| !!! | ATGTTTTTACTGCTACTTTG+CGG | + | chr7_3:67810726-67810745 | Msa1118970:three_prime_UTR | 30.0% |
| !! | GGTGTTGGTATTAAATAGTG+AGG | + | chr7_3:67807342-67807361 | Msa1118970:five_prime_UTR | 35.0% |
| !! | AAGATGAAGTGCTGAACATT+CGG | - | chr7_3:67807383-67807402 | None:intergenic | 35.0% |
| ! | GATATTGCTGTTAACTTCAC+AGG | + | chr7_3:67807601-67807620 | Msa1118970:intron | 35.0% |
| CATTGCAGATGGAATGTTTA+AGG | + | chr7_3:67807706-67807725 | Msa1118970:intron | 35.0% | |
| !! | AACTGTTTTGAACAGAGCTT+GGG | + | chr7_3:67807769-67807788 | Msa1118970:CDS | 35.0% |
| !!! | GGAAGACTTTTTTGTACTGT+TGG | + | chr7_3:67808055-67808074 | Msa1118970:intron | 35.0% |
| !! | TATTTTTACCTGCAGTGGTT+TGG | + | chr7_3:67808123-67808142 | Msa1118970:intron | 35.0% |
| !!! | GTGACTTGGTGTTTTGATTT+AGG | + | chr7_3:67808164-67808183 | Msa1118970:intron | 35.0% |
| ATTTAGGAATTTGAGGAGAG+TGG | + | chr7_3:67808180-67808199 | Msa1118970:intron | 35.0% | |
| !!! | AGATCCAGAAAAGCATTTTC+AGG | + | chr7_3:67808203-67808222 | Msa1118970:CDS | 35.0% |
| ! | AGATCCTGAAAATGCTTTTC+TGG | - | chr7_3:67808210-67808229 | None:intergenic | 35.0% |
| !! | TCTTTTGTCATTGGCTAAAG+AGG | + | chr7_3:67808227-67808246 | Msa1118970:CDS | 35.0% |
| !! | CTTTTGTCATTGGCTAAAGA+GGG | + | chr7_3:67808228-67808247 | Msa1118970:CDS | 35.0% |
| !! | TGTTGTTGTTTGTGAATGCT+AGG | + | chr7_3:67808677-67808696 | Msa1118970:intron | 35.0% |
| TGGTTGAGAAACATAAAGAC+AGG | + | chr7_3:67808788-67808807 | Msa1118970:CDS | 35.0% | |
| GAGAAATGAACTTGATCGTA+AGG | + | chr7_3:67808905-67808924 | Msa1118970:intron | 35.0% | |
| !! | CTACTCGTTTTGATGGATAT+CGG | - | chr7_3:67809013-67809032 | None:intergenic | 35.0% |
| !! | AATCACTTTGGGATGTGAAA+TGG | + | chr7_3:67809132-67809151 | Msa1118970:intron | 35.0% |
| ! | TACTTTTATGACAGGTTCTC+TGG | + | chr7_3:67809167-67809186 | Msa1118970:intron | 35.0% |
| CATACTACCGGTAAATGAAT+GGG | - | chr7_3:67809201-67809220 | None:intergenic | 35.0% | |
| AATGCAATCATCCATACTAC+CGG | - | chr7_3:67809213-67809232 | None:intergenic | 35.0% | |
| ! | ATACTAGGGTGCCTTAAAAT+AGG | - | chr7_3:67809304-67809323 | None:intergenic | 35.0% |
| GACAAAGATAGACATGTGAA+TGG | + | chr7_3:67809473-67809492 | Msa1118970:intron | 35.0% | |
| TCAATCATCATTCTCTCAAC+AGG | - | chr7_3:67809631-67809650 | None:intergenic | 35.0% | |
| GTATTCTTGATTTCGCAGTA+GGG | - | chr7_3:67809664-67809683 | None:intergenic | 35.0% | |
| AGTATTCTTGATTTCGCAGT+AGG | - | chr7_3:67809665-67809684 | None:intergenic | 35.0% | |
| GAAATCAAGAATACTCATGC+CGG | + | chr7_3:67809670-67809689 | Msa1118970:CDS | 35.0% | |
| !! | CATGGTTTTGCTTATCAATG+TGG | + | chr7_3:67809797-67809816 | Msa1118970:intron | 35.0% |
| ATCAATGTGGCAATACTTCA+AGG | + | chr7_3:67809810-67809829 | Msa1118970:intron | 35.0% | |
| ! | TATGTTACCTGCAAGTATTG+TGG | - | chr7_3:67810046-67810065 | None:intergenic | 35.0% |
| CATTGATCCTATGTGTTTGT+TGG | + | chr7_3:67810116-67810135 | Msa1118970:intron | 35.0% | |
| ! | TCTTTTCCCAACAAACACAT+AGG | - | chr7_3:67810126-67810145 | None:intergenic | 35.0% |
| TAAATAGGAACACCTACTGA+CGG | + | chr7_3:67810176-67810195 | Msa1118970:intron | 35.0% | |
| AATTTGGTCCAGCCTAAATT+TGG | - | chr7_3:67810226-67810245 | None:intergenic | 35.0% | |
| CCACTAGTCAGATTCAAATT+TGG | - | chr7_3:67810242-67810261 | None:intergenic | 35.0% | |
| CCAAATTTGAATCTGACTAG+TGG | + | chr7_3:67810239-67810258 | Msa1118970:intron | 35.0% | |
| ACTCTTGGCATCTAATAACT+AGG | - | chr7_3:67810316-67810335 | None:intergenic | 35.0% | |
| !! | GGCATAACAATTGACTCTTT+TGG | + | chr7_3:67810434-67810453 | Msa1118970:intron | 35.0% |
| ! | CTGCAAAGCAATATTTTCCT+TGG | - | chr7_3:67810520-67810539 | None:intergenic | 35.0% |
| CAAGGAAAATATTGCTTTGC+AGG | + | chr7_3:67810518-67810537 | Msa1118970:intron | 35.0% | |
| GTAATCTCTCTCAAGAATTG+GGG | - | chr7_3:67810680-67810699 | None:intergenic | 35.0% | |
| GTGTAATCTCTCTCAAGAAT+TGG | - | chr7_3:67810682-67810701 | None:intergenic | 35.0% | |
| !!! | TGTTTTTACTGCTACTTTGC+GGG | + | chr7_3:67810727-67810746 | Msa1118970:three_prime_UTR | 35.0% |
| AAACTATTAGAACTGCCCAT+TGG | - | chr7_3:67810890-67810909 | None:intergenic | 35.0% | |
| ! | TTTTGCTTACAAGGATGCAT+TGG | + | chr7_3:67810908-67810927 | Msa1118970:three_prime_UTR | 35.0% |
| CACTTCATCTTCTTCTTCTG+TGG | + | chr7_3:67807392-67807411 | Msa1118970:five_prime_UTR | 40.0% | |
| CAAGCTCTGTTCAAAACAGT+TGG | - | chr7_3:67807770-67807789 | None:intergenic | 40.0% | |
| !! | CAACTGTTTTGAACAGAGCT+TGG | + | chr7_3:67807768-67807787 | Msa1118970:CDS | 40.0% |
| ATCCACCAGTTACGATGATT+CGG | - | chr7_3:67807808-67807827 | None:intergenic | 40.0% | |
| CAAACCATCAGTTTCAGCAA+TGG | - | chr7_3:67807858-67807877 | None:intergenic | 40.0% | |
| AAATCAACCTTGCAACGTGT+TGG | - | chr7_3:67808088-67808107 | None:intergenic | 40.0% | |
| !! | TTCGGTATTTTTACCTGCAG+TGG | + | chr7_3:67808118-67808137 | Msa1118970:intron | 40.0% |
| GCTAAAGAGGGAATTCAGAA+AGG | + | chr7_3:67808240-67808259 | Msa1118970:CDS | 40.0% | |
| AGAGGGAATTCAGAAAGGAA+AGG | + | chr7_3:67808245-67808264 | Msa1118970:CDS | 40.0% | |
| GATTCAGAACTATGTGGATC+TGG | - | chr7_3:67808343-67808362 | None:intergenic | 40.0% | |
| !! | AGTGTGGATTAGACTATGAC+CGG | + | chr7_3:67808533-67808552 | Msa1118970:CDS | 40.0% |
| AGCTGCAGATTTCTGTGAAA+TGG | + | chr7_3:67808768-67808787 | Msa1118970:CDS | 40.0% | |
| AAAATGATAGGCTAGGCAAG+AGG | - | chr7_3:67808876-67808895 | None:intergenic | 40.0% | |
| !! | TCTTTCAAGTTTGGGAGTTG+AGG | + | chr7_3:67808968-67808987 | Msa1118970:intron | 40.0% |
| !! | CTTTCAAGTTTGGGAGTTGA+GGG | + | chr7_3:67808969-67808988 | Msa1118970:intron | 40.0% |
| ! | CTCAATGCTACTCGTTTTGA+TGG | - | chr7_3:67809020-67809039 | None:intergenic | 40.0% |
| CATCAAAACGAGTAGCATTG+AGG | + | chr7_3:67809018-67809037 | Msa1118970:intron | 40.0% | |
| AAGCGTGTATATCAGGTATG+AGG | - | chr7_3:67809063-67809082 | None:intergenic | 40.0% | |
| ! | TTTTATGACAGGTTCTCTGG+TGG | + | chr7_3:67809170-67809189 | Msa1118970:intron | 40.0% |
| CCATACTACCGGTAAATGAA+TGG | - | chr7_3:67809202-67809221 | None:intergenic | 40.0% | |
| CCATTCATTTACCGGTAGTA+TGG | + | chr7_3:67809199-67809218 | Msa1118970:CDS | 40.0% | |
| ! | TAGGGTGCCTTAAAATAGGT+TGG | - | chr7_3:67809300-67809319 | None:intergenic | 40.0% |
| TGAGAACCTTGATGTTGTCA+AGG | + | chr7_3:67809600-67809619 | Msa1118970:CDS | 40.0% | |
| GAGAACCTTGATGTTGTCAA+GGG | + | chr7_3:67809601-67809620 | Msa1118970:CDS | 40.0% | |
| GAATACCCTTGACAACATCA+AGG | - | chr7_3:67809609-67809628 | None:intergenic | 40.0% | |
| AAGAATACTCATGCCGGAAT+AGG | + | chr7_3:67809676-67809695 | Msa1118970:CDS | 40.0% | |
| ! | GCCTTGTTCAGTTAGGTAAA+TGG | + | chr7_3:67809774-67809793 | Msa1118970:intron | 40.0% |
| GCCATTTACCTAACTGAACA+AGG | - | chr7_3:67809778-67809797 | None:intergenic | 40.0% | |
| GTTCAGTTAGGTAAATGGCA+TGG | + | chr7_3:67809779-67809798 | Msa1118970:intron | 40.0% | |
| CTGATTGACTGTAATGTTCC+AGG | + | chr7_3:67809952-67809971 | Msa1118970:intron | 40.0% | |
| !! | TGTAAAGGCATCAATGACGT+GGG | + | chr7_3:67809999-67810018 | Msa1118970:CDS | 40.0% |
| CATTGTACCACAATACTTGC+AGG | + | chr7_3:67810036-67810055 | Msa1118970:CDS | 40.0% | |
| ! | GTGATCACTTGCATTGGTAA+CGG | - | chr7_3:67810087-67810106 | None:intergenic | 40.0% |
| CTACAAGTGATCACTTGCAT+TGG | - | chr7_3:67810093-67810112 | None:intergenic | 40.0% | |
| AAATAGGAACACCTACTGAC+GGG | + | chr7_3:67810177-67810196 | Msa1118970:intron | 40.0% | |
| AATTTGGCACAGGTCAAGAT+GGG | - | chr7_3:67810210-67810229 | None:intergenic | 40.0% | |
| AAATTTGGCACAGGTCAAGA+TGG | - | chr7_3:67810211-67810230 | None:intergenic | 40.0% | |
| TCTTGACCTGTGCCAAATTT+AGG | + | chr7_3:67810211-67810230 | Msa1118970:intron | 40.0% | |
| ! | TTTGAATCTGACTAGTGGGT+TGG | + | chr7_3:67810244-67810263 | Msa1118970:intron | 40.0% |
| TAGATGCCAAGAGTCTTGAT+TGG | + | chr7_3:67810322-67810341 | Msa1118970:intron | 40.0% | |
| CTACAGGAGAAAAGGATCGA+TGG | - | chr7_3:67807436-67807455 | None:intergenic | 45.0% | |
| ! | GATCCTTTTCTCCTGTAGTG+AGG | + | chr7_3:67807438-67807457 | Msa1118970:five_prime_UTR | 45.0% |
| TCACCTCACTACAGGAGAAA+AGG | - | chr7_3:67807444-67807463 | None:intergenic | 45.0% | |
| AAGCAGACATGGCAGCTATT+CGG | + | chr7_3:67807471-67807490 | Msa1118970:exon | 45.0% | |
| ATGGCAGCTATTCGGATGAT+AGG | + | chr7_3:67807479-67807498 | Msa1118970:CDS | 45.0% | |
| GTTCACCGAATCATCGTAAC+TGG | + | chr7_3:67807800-67807819 | Msa1118970:CDS | 45.0% | |
| TGGATCCCTTCAGGAATCAA+GGG | + | chr7_3:67807823-67807842 | Msa1118970:CDS | 45.0% | |
| AGCTTCCCTTGATTCCTGAA+GGG | - | chr7_3:67807831-67807850 | None:intergenic | 45.0% | |
| CTTGCCATTGCTGAAACTGA+TGG | + | chr7_3:67807851-67807870 | Msa1118970:CDS | 45.0% | |
| ! | TTTACCTGCAGTGGTTTGGA+TGG | + | chr7_3:67808127-67808146 | Msa1118970:intron | 45.0% |
| GTAACTAGATGTGCTTGAGC+AGG | + | chr7_3:67808317-67808336 | Msa1118970:intron | 45.0% | |
| ATATGCAAGGTGGTTGCAGT+TGG | + | chr7_3:67808508-67808527 | Msa1118970:intron | 45.0% | |
| ! | TACCTCTTTTGAATCTCGGC+GGG | - | chr7_3:67808571-67808590 | None:intergenic | 45.0% |
| ! | GTACCTCTTTTGAATCTCGG+CGG | - | chr7_3:67808572-67808591 | None:intergenic | 45.0% |
| GCTCGCATGTGCAAAAACAT+AGG | - | chr7_3:67808745-67808764 | None:intergenic | 45.0% | |
| ! | GGTGTCACCCATTCATTTAC+CGG | + | chr7_3:67809191-67809210 | Msa1118970:CDS | 45.0% |
| !! | CACATTTCTGGTACACTGAC+AGG | + | chr7_3:67809550-67809569 | Msa1118970:intron | 45.0% |
| GGTACACTGACAGGCATAAA+TGG | + | chr7_3:67809559-67809578 | Msa1118970:intron | 45.0% | |
| !! | GCAATGAGCCTTGTTCAGTT+AGG | + | chr7_3:67809767-67809786 | Msa1118970:CDS | 45.0% |
| ATGTTCCAGGCAAGTTCTTG+AGG | + | chr7_3:67809965-67809984 | Msa1118970:intron | 45.0% | |
| !! | CTGTAAAGGCATCAATGACG+TGG | + | chr7_3:67809998-67810017 | Msa1118970:CDS | 45.0% |
| TGTGGTACAATGTTCTACCG+AGG | - | chr7_3:67810028-67810047 | None:intergenic | 45.0% | |
| ! | CAGGTAACATAGCTTGTCTC+TGG | + | chr7_3:67810055-67810074 | Msa1118970:intron | 45.0% |
| ATGCCAAGAGTCTTGATTGG+TGG | + | chr7_3:67810325-67810344 | Msa1118970:intron | 45.0% | |
| AGTCCACCAATCAAGACTCT+TGG | - | chr7_3:67810331-67810350 | None:intergenic | 45.0% | |
| !! | TTGATTGGTGGACTGCATCT+TGG | + | chr7_3:67810337-67810356 | Msa1118970:intron | 45.0% |
| ! | GATGTTTTTCCCGCATGACT+TGG | + | chr7_3:67810540-67810559 | Msa1118970:CDS | 45.0% |
| TCTCTCTCAAGAATTGGGGA+TGG | - | chr7_3:67810676-67810695 | None:intergenic | 45.0% | |
| TCGTTGCTTCACCTCACTAC+AGG | - | chr7_3:67807452-67807471 | None:intergenic | 50.0% | |
| GTGAAGCAACGAAGCAGACA+TGG | + | chr7_3:67807460-67807479 | Msa1118970:exon | 50.0% | |
| CACCGAATCATCGTAACTGG+TGG | + | chr7_3:67807803-67807822 | Msa1118970:CDS | 50.0% | |
| GTGGATCCCTTCAGGAATCA+AGG | + | chr7_3:67807822-67807841 | Msa1118970:CDS | 50.0% | |
| GAGCTTCCCTTGATTCCTGA+AGG | - | chr7_3:67807832-67807851 | None:intergenic | 50.0% | |
| TGTGCATCCAACACGTTGCA+AGG | + | chr7_3:67808078-67808097 | Msa1118970:CDS | 50.0% | |
| ACTTCCATCCAAACCACTGC+AGG | - | chr7_3:67808134-67808153 | None:intergenic | 50.0% | |
| ! | ACCTCTTTTGAATCTCGGCG+GGG | - | chr7_3:67808570-67808589 | None:intergenic | 50.0% |
| TTCCAGGCAAGTTCTTGAGG+TGG | + | chr7_3:67809968-67809987 | Msa1118970:intron | 50.0% | |
| AACCACCTCAAGAACTTGCC+TGG | - | chr7_3:67809973-67809992 | None:intergenic | 50.0% | |
| CAAGTTCTTGAGGTGGTTGC+TGG | + | chr7_3:67809975-67809994 | Msa1118970:CDS | 50.0% | |
| ATCAATGACGTGGGTAGCCT+CGG | + | chr7_3:67810008-67810027 | Msa1118970:CDS | 50.0% | |
| GACCTGTGCCAAATTTAGGC+TGG | + | chr7_3:67810215-67810234 | Msa1118970:intron | 50.0% | |
| GTCCAGCCTAAATTTGGCAC+AGG | - | chr7_3:67810220-67810239 | None:intergenic | 50.0% | |
| TTGAACAGAGCTTGGGCTGC+TGG | + | chr7_3:67807776-67807795 | Msa1118970:CDS | 55.0% | |
| ! | CGTAACTGGTGGATCCCTTC+AGG | + | chr7_3:67807814-67807833 | Msa1118970:CDS | 55.0% |
| GTGGTTGCAGTTGGAGAGTG+TGG | + | chr7_3:67808517-67808536 | Msa1118970:CDS | 55.0% | |
| ! | GAGGTGGTTGCTGGCTGTAA+AGG | + | chr7_3:67809984-67810003 | Msa1118970:CDS | 55.0% |
| CCGCAGAATCCAAGTCATGC+GGG | - | chr7_3:67810552-67810571 | None:intergenic | 55.0% | |
| ! | CCCGCATGACTTGGATTCTG+CGG | + | chr7_3:67810549-67810568 | Msa1118970:CDS | 55.0% |
| GCCGCAGAATCCAAGTCATG+CGG | - | chr7_3:67810553-67810572 | None:intergenic | 55.0% | |
| ! | GCGGCTGATGCTCTTTTAGC+TGG | + | chr7_3:67810568-67810587 | Msa1118970:CDS | 55.0% |
| CGGCGGGGCAAAAATGAAGC+CGG | - | chr7_3:67808555-67808574 | None:intergenic | 60.0% | |
| GCCCCGCCGAGATTCAAAAG+AGG | + | chr7_3:67808566-67808585 | Msa1118970:CDS | 60.0% | |
| TGGGATTCACGCCCGTCAGT+AGG | - | chr7_3:67810191-67810210 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 67807331 | 67810937 | 67807331 | ID=Msa1118970;Name=Msa1118970 |
| chr7_3 | mRNA | 67807331 | 67810937 | 67807331 | ID=Msa1118970-mRNA-1;Parent=Msa1118970;Name=Msa1118970-mRNA-1;_AED=0.13;_eAED=0.13;_QI=148|1|1|1|1|1|11|331|319 |
| chr7_3 | exon | 67807331 | 67807500 | 67807331 | ID=Msa1118970-mRNA-1:exon:16788;Parent=Msa1118970-mRNA-1 |
| chr7_3 | exon | 67807602 | 67807622 | 67807602 | ID=Msa1118970-mRNA-1:exon:16789;Parent=Msa1118970-mRNA-1 |
| chr7_3 | exon | 67807714 | 67807872 | 67807714 | ID=Msa1118970-mRNA-1:exon:16790;Parent=Msa1118970-mRNA-1 |
| chr7_3 | exon | 67808056 | 67808099 | 67808056 | ID=Msa1118970-mRNA-1:exon:16791;Parent=Msa1118970-mRNA-1 |
| chr7_3 | exon | 67808186 | 67808266 | 67808186 | ID=Msa1118970-mRNA-1:exon:16792;Parent=Msa1118970-mRNA-1 |
| chr7_3 | exon | 67808517 | 67808587 | 67808517 | ID=Msa1118970-mRNA-1:exon:16793;Parent=Msa1118970-mRNA-1 |
| chr7_3 | exon | 67808699 | 67808809 | 67808699 | ID=Msa1118970-mRNA-1:exon:16794;Parent=Msa1118970-mRNA-1 |
| chr7_3 | exon | 67809181 | 67809263 | 67809181 | ID=Msa1118970-mRNA-1:exon:16795;Parent=Msa1118970-mRNA-1 |
| chr7_3 | exon | 67809572 | 67809788 | 67809572 | ID=Msa1118970-mRNA-1:exon:16796;Parent=Msa1118970-mRNA-1 |
| chr7_3 | exon | 67809974 | 67810057 | 67809974 | ID=Msa1118970-mRNA-1:exon:16797;Parent=Msa1118970-mRNA-1 |
| chr7_3 | exon | 67810540 | 67810937 | 67810540 | ID=Msa1118970-mRNA-1:exon:16798;Parent=Msa1118970-mRNA-1 |
| chr7_3 | five_prime_UTR | 67807331 | 67807478 | 67807331 | ID=Msa1118970-mRNA-1:five_prime_utr;Parent=Msa1118970-mRNA-1 |
| chr7_3 | CDS | 67807479 | 67807500 | 67807479 | ID=Msa1118970-mRNA-1:cds;Parent=Msa1118970-mRNA-1 |
| chr7_3 | CDS | 67807602 | 67807622 | 67807602 | ID=Msa1118970-mRNA-1:cds;Parent=Msa1118970-mRNA-1 |
| chr7_3 | CDS | 67807714 | 67807872 | 67807714 | ID=Msa1118970-mRNA-1:cds;Parent=Msa1118970-mRNA-1 |
| chr7_3 | CDS | 67808056 | 67808099 | 67808056 | ID=Msa1118970-mRNA-1:cds;Parent=Msa1118970-mRNA-1 |
| chr7_3 | CDS | 67808186 | 67808266 | 67808186 | ID=Msa1118970-mRNA-1:cds;Parent=Msa1118970-mRNA-1 |
| chr7_3 | CDS | 67808517 | 67808587 | 67808517 | ID=Msa1118970-mRNA-1:cds;Parent=Msa1118970-mRNA-1 |
| chr7_3 | CDS | 67808699 | 67808809 | 67808699 | ID=Msa1118970-mRNA-1:cds;Parent=Msa1118970-mRNA-1 |
| chr7_3 | CDS | 67809181 | 67809263 | 67809181 | ID=Msa1118970-mRNA-1:cds;Parent=Msa1118970-mRNA-1 |
| chr7_3 | CDS | 67809572 | 67809788 | 67809572 | ID=Msa1118970-mRNA-1:cds;Parent=Msa1118970-mRNA-1 |
| chr7_3 | CDS | 67809974 | 67810057 | 67809974 | ID=Msa1118970-mRNA-1:cds;Parent=Msa1118970-mRNA-1 |
| chr7_3 | CDS | 67810540 | 67810606 | 67810540 | ID=Msa1118970-mRNA-1:cds;Parent=Msa1118970-mRNA-1 |
| chr7_3 | three_prime_UTR | 67810607 | 67810937 | 67810607 | ID=Msa1118970-mRNA-1:three_prime_utr;Parent=Msa1118970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
