Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1420530 | sp|Q640V9|TATD1_XENLA | 50.662 | 302 | 142 | 5 | 1 | 302 | 1 | 295 | 7.99e-109 | 321 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1420530 | A0A072UEM8 | 98.433 | 319 | 5 | 0 | 1 | 319 | 1 | 319 | 0.0 | 658 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000790 | Msa1420530 | 0.918280 | 1.892880e-86 | -8.615850e-47 |
| Msa1080830 | Msa1420530 | 0.929309 | 8.354969e-93 | -8.615850e-47 |
| Msa1118970 | Msa1420530 | 0.903489 | 3.290427e-79 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1420530 | MtrunA17_Chr7g0267561 | 98.433 | 319 | 5 | 0 | 1 | 319 | 1 | 319 | 0.0 | 658 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1420530 | AT3G52390.1 | 80.878 | 319 | 61 | 0 | 1 | 319 | 1 | 319 | 0.0 | 556 |
| Msa1420530 | AT3G52390.2 | 80.124 | 322 | 61 | 1 | 1 | 319 | 1 | 322 | 0.0 | 550 |
Find 82 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTGCAGATGGAATGTTTA+AGG | 0.179710 | tig0024822:-50912 | Msa1420530:intron |
| CCATTCATTTACCGGTAGTA+TGG | 0.274416 | tig0024822:-49418 | Msa1420530:CDS |
| GGTACACTGACAGGCATAAA+TGG | 0.296686 | tig0024822:-49058 | Msa1420530:intron |
| TACTTCTCTTTCTTCTTAGA+AGG | 0.309073 | tig0024822:+48899 | None:intergenic |
| CAAGTTCTTGAGGTGGTTGC+TGG | 0.314482 | tig0024822:-48642 | Msa1420530:CDS |
| GTGTAATCTCTCTCAAGAAT+TGG | 0.339719 | tig0024822:+47938 | None:intergenic |
| TGTAATCTCTCTCAAGAATT+GGG | 0.341746 | tig0024822:+47939 | None:intergenic |
| AAACAAAACTATTATGATAA+AGG | 0.353733 | tig0024822:-47755 | Msa1420530:three_prime_UTR |
| AGATTTAACAAAACCTATTC+CGG | 0.363419 | tig0024822:+48928 | None:intergenic |
| CGTAACTGGTGGATCCCTTC+AGG | 0.367497 | tig0024822:-50804 | Msa1420530:CDS |
| AAGAATACTCATGCCGGAAT+AGG | 0.370394 | tig0024822:-48941 | Msa1420530:CDS |
| TGTTTACGATATAAAATTGT+TGG | 0.376504 | tig0024822:-51299 | None:intergenic |
| TTGAACAGAGCTTGGGCTGC+TGG | 0.381184 | tig0024822:-50842 | Msa1420530:CDS |
| TCAATCATCATTCTCTCAAC+AGG | 0.397537 | tig0024822:+48989 | None:intergenic |
| GGTGTCACCCATTCATTTAC+CGG | 0.403791 | tig0024822:-49426 | Msa1420530:CDS |
| CATTGTACCACAACACTTGC+AGG | 0.406974 | tig0024822:-48581 | Msa1420530:intron |
| ATTGCAGATGGAATGTTTAA+GGG | 0.415859 | tig0024822:-50911 | Msa1420530:intron |
| CCATACTACCGGTAAATGAA+TGG | 0.419461 | tig0024822:+49418 | None:intergenic |
| ATTTAGGAATTTGAGGAGAG+TGG | 0.434545 | tig0024822:-50437 | Msa1420530:intron |
| GTTCACCGAATCATCGTAAC+TGG | 0.440208 | tig0024822:-50818 | Msa1420530:CDS |
| GTTTACGATATAAAATTGTT+GGG | 0.441361 | tig0024822:-51298 | None:intergenic |
| GATATTGCTGTTAACTTCAC+AGG | 0.448944 | tig0024822:-51017 | Msa1420530:intron |
| AAGCAGACATGGCAGCTATT+CGG | 0.450967 | tig0024822:-51147 | Msa1420530:exon |
| ATATAAAATTGTTGGGGTGT+TGG | 0.451544 | tig0024822:-51291 | None:intergenic |
| AGCTGCAGATTTCTGTGAAA+TGG | 0.453615 | tig0024822:-49849 | Msa1420530:CDS |
| ATGGCAGCTATTCGGATGAT+AGG | 0.456359 | tig0024822:-51139 | Msa1420530:intron |
| AGTATTCTTGATTTCGCAGT+AGG | 0.457640 | tig0024822:+48955 | None:intergenic |
| CACTTCATCTTCTTCTTCTG+TGG | 0.463893 | tig0024822:-51226 | Msa1420530:five_prime_UTR |
| GTGGATCCCTTCAGGAATCA+AGG | 0.468309 | tig0024822:-50796 | Msa1420530:CDS |
| GAGGTGGTTGCTGGCTGTAA+AGG | 0.472385 | tig0024822:-48633 | Msa1420530:CDS |
| GCAATGAGCCTTGTTCAGTT+AGG | 0.474293 | tig0024822:-48850 | Msa1420530:intron |
| TCGTTGCTTCACCTCACTAC+AGG | 0.480936 | tig0024822:+51169 | None:intergenic |
| CTTGCCATTGCTGAAACTGA+TGG | 0.480998 | tig0024822:-50767 | Msa1420530:intron |
| AAGATGAAGTGCTGAACATT+CGG | 0.482462 | tig0024822:+51238 | None:intergenic |
| ATCCACCAGTTACGATGATT+CGG | 0.484521 | tig0024822:+50813 | None:intergenic |
| TCACCTCACTACAGGAGAAA+AGG | 0.489765 | tig0024822:+51177 | None:intergenic |
| TATTATGATAAAGGTTCCAA+TGG | 0.499165 | tig0024822:-47746 | Msa1420530:three_prime_UTR |
| ATATGCAAGGTGGTTGCAGT+TGG | 0.510781 | tig0024822:-50109 | Msa1420530:intron |
| GGTGTTGGTATTAAATAGTG+AGG | 0.512050 | tig0024822:-51276 | Msa1420530:five_prime_UTR |
| ATCAATGACGTGGGTAGCCT+CGG | 0.515221 | tig0024822:-48609 | Msa1420530:CDS |
| CATACTACCGGTAAATGAAT+GGG | 0.528644 | tig0024822:+49419 | None:intergenic |
| GAGCTTCCCTTGATTCCTGA+AGG | 0.541070 | tig0024822:+50789 | None:intergenic |
| AAATCAACCTTGCAACGTGT+TGG | 0.542834 | tig0024822:+50532 | None:intergenic |
| CCCGCATGACTTGGATTCTG+CGG | 0.544613 | tig0024822:-48068 | Msa1420530:CDS |
| ATGTTCCAGGCAAGTTCTTG+AGG | 0.547709 | tig0024822:-48652 | Msa1420530:intron |
| ATTATGATAAAGGTTCCAAT+GGG | 0.559221 | tig0024822:-47745 | Msa1420530:three_prime_UTR |
| GTGGTTGCAGTTGGAGAGTG+TGG | 0.563440 | tig0024822:-50100 | Msa1420530:CDS |
| GCCCCGCCGAGATTCAAAAG+AGG | 0.565535 | tig0024822:-50051 | Msa1420530:intron |
| TGAGAACCTTGATGTTGTCA+AGG | 0.568216 | tig0024822:-49017 | Msa1420530:CDS |
| GTGAAGCAACGAAGCAGACA+TGG | 0.571755 | tig0024822:-51158 | Msa1420530:exon |
| CAAGCTCTGTTCAAAACAGT+TGG | 0.572850 | tig0024822:+50851 | None:intergenic |
| CTGTAAAGGCATCAATGACG+TGG | 0.573785 | tig0024822:-48619 | Msa1420530:CDS |
| TCATTTGATAAAATGTACAT+TGG | 0.575483 | tig0024822:-49375 | Msa1420530:intron |
| GCTAAAGAGGGAATTCAGAA+AGG | 0.576535 | tig0024822:-50377 | Msa1420530:CDS |
| AATGCAATCATCCATACTAC+CGG | 0.579184 | tig0024822:+49407 | None:intergenic |
| GATCAAGATTGTATTGTCAA+AGG | 0.580228 | tig0024822:-48875 | Msa1420530:CDS |
| AGCTTCCCTTGATTCCTGAA+GGG | 0.580403 | tig0024822:+50790 | None:intergenic |
| AGTGTGGATTAGACTATGAC+CGG | 0.580933 | tig0024822:-50084 | Msa1420530:CDS |
| TTTACGATATAAAATTGTTG+GGG | 0.581314 | tig0024822:-51297 | None:intergenic |
| TTCCAGGCAAGTTCTTGAGG+TGG | 0.584211 | tig0024822:-48649 | Msa1420530:intron |
| CTACAGGAGAAAAGGATCGA+TGG | 0.585562 | tig0024822:+51185 | None:intergenic |
| AAACTATTAGAACTGCCCAT+TGG | 0.586072 | tig0024822:+47730 | None:intergenic |
| CCGCAGAATCCAAGTCATGC+GGG | 0.587287 | tig0024822:+48068 | None:intergenic |
| GAAATCAAGAATACTCATGC+CGG | 0.587360 | tig0024822:-48947 | Msa1420530:CDS |
| TGGTTGAGAAACATAAAGAC+AGG | 0.587924 | tig0024822:-49829 | Msa1420530:intron |
| CACCGAATCATCGTAACTGG+TGG | 0.594177 | tig0024822:-50815 | Msa1420530:CDS |
| GTATTCTTGATTTCGCAGTA+GGG | 0.599813 | tig0024822:+48956 | None:intergenic |
| AGAGGGAATTCAGAAAGGAA+AGG | 0.606009 | tig0024822:-50372 | Msa1420530:intron |
| TCTCTCTCAAGAATTGGGGA+TGG | 0.610326 | tig0024822:+47944 | None:intergenic |
| TGGATCCCTTCAGGAATCAA+GGG | 0.611907 | tig0024822:-50795 | Msa1420530:CDS |
| GCCATTTACCTAACTGAACA+AGG | 0.612592 | tig0024822:+48842 | None:intergenic |
| TGTGCATCCAACACGTTGCA+AGG | 0.614854 | tig0024822:-50539 | Msa1420530:intron |
| GCCGCAGAATCCAAGTCATG+CGG | 0.616525 | tig0024822:+48067 | None:intergenic |
| GAGAACCTTGATGTTGTCAA+GGG | 0.622857 | tig0024822:-49016 | Msa1420530:CDS |
| GTAATCTCTCTCAAGAATTG+GGG | 0.629460 | tig0024822:+47940 | None:intergenic |
| ATGTTTAAGGGAATCTACAA+TGG | 0.631092 | tig0024822:-50899 | Msa1420530:CDS |
| GAATACCCTTGACAACATCA+AGG | 0.648280 | tig0024822:+49011 | None:intergenic |
| CAAACCATCAGTTTCAGCAA+TGG | 0.654081 | tig0024822:+50763 | None:intergenic |
| GTGTTGGTATTAAATAGTGA+GGG | 0.656889 | tig0024822:-51275 | Msa1420530:five_prime_UTR |
| TGTAAAGGCATCAATGACGT+GGG | 0.682265 | tig0024822:-48618 | Msa1420530:CDS |
| TATGTTACCTGCAAGTGTTG+TGG | 0.717422 | tig0024822:+48574 | None:intergenic |
| TGTGGTACAATGTTCTACCG+AGG | 0.734684 | tig0024822:+48592 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAATTATCATCAAAATT+AGG | + | tig0024822:48388-48407 | None:intergenic | 10.0% |
| !!! | AGTTTAATATTTTTTAAACA+GGG | + | tig0024822:49007-49026 | None:intergenic | 10.0% |
| !!! | TAGTTTAATATTTTTTAAAC+AGG | + | tig0024822:49008-49027 | None:intergenic | 10.0% |
| !!! | GTTTAATATTTTTTAAACAG+GGG | + | tig0024822:49006-49025 | None:intergenic | 15.0% |
| !!! | GAATATTTAAGATTTCAAAA+TGG | + | tig0024822:49204-49223 | None:intergenic | 15.0% |
| !! | AATCTTAAATATTCAAACAA+TGG | - | tig0024822:49210-49229 | Msa1420530:intron | 15.0% |
| !! | CTGATTATAAAAAGATAAAT+AGG | - | tig0024822:50533-50552 | Msa1420530:intron | 15.0% |
| !!! | TATCATAATAGTTTTGTTTT+TGG | + | tig0024822:51233-51252 | None:intergenic | 15.0% |
| !! | AAACAAAACTATTATGATAA+AGG | - | tig0024822:51234-51253 | Msa1420530:five_prime_UTR | 15.0% |
| !!! | GCATTTAATTAAGTTGTTTA+TGG | - | tig0024822:48354-48373 | Msa1420530:intron | 20.0% |
| !!! | TTAAGTTGTTTATGGAAATA+TGG | - | tig0024822:48362-48381 | Msa1420530:intron | 20.0% |
| !!! | TATTTCTAAAAATGCTTACT+TGG | + | tig0024822:48836-48855 | None:intergenic | 20.0% |
| !!! | TTTTTTCTTTTTCATATGCA+AGG | - | tig0024822:48867-48886 | Msa1420530:CDS | 20.0% |
| !! | CTCAAAATGAATAAAATGAT+AGG | + | tig0024822:49260-49279 | None:intergenic | 20.0% |
| !! | TCATTTGATAAAATGTACAT+TGG | - | tig0024822:49614-49633 | Msa1420530:intron | 20.0% |
| !!! | ATCTAAAATTAGACATACTA+GGG | + | tig0024822:49690-49709 | None:intergenic | 20.0% |
| !!! | AATCTAAAATTAGACATACT+AGG | + | tig0024822:49691-49710 | None:intergenic | 20.0% |
| !!! | TTTACTTGTGGTTATATTTT+TGG | + | tig0024822:49722-49741 | None:intergenic | 20.0% |
| !! | TTAAAAGATGAACTTACTTT+AGG | - | tig0024822:49775-49794 | Msa1420530:intron | 20.0% |
| !! | TATCATTTATGGAATTTAAC+TGG | + | tig0024822:49902-49921 | None:intergenic | 20.0% |
| !! | AAGATTAACAATCATATACA+GGG | + | tig0024822:50266-50285 | None:intergenic | 20.0% |
| !! | AAAGATTAACAATCATATAC+AGG | + | tig0024822:50267-50286 | None:intergenic | 20.0% |
| !!! | GATAGTCATTTAAAATATGA+AGG | + | tig0024822:50292-50311 | None:intergenic | 20.0% |
| !! | TTAATATGCTAATGTTTGAT+TGG | - | tig0024822:50785-50804 | Msa1420530:CDS | 20.0% |
| !! | TTTATCAAACACTTTGTTTG+CGG | - | tig0024822:48007-48026 | Msa1420530:three_prime_UTR | 25.0% |
| ! | TATTTCAAAATCATTGCAGA+TGG | - | tig0024822:48066-48085 | Msa1420530:CDS | 25.0% |
| ! | TTGATTGTTTGTTTGATCAT+AGG | - | tig0024822:48406-48425 | Msa1420530:intron | 25.0% |
| !!! | GTTGATTTTCTTTACTCTTT+CGG | - | tig0024822:48472-48491 | Msa1420530:intron | 25.0% |
| !!! | TGTTTTGATTTAGGAATTTG+AGG | - | tig0024822:48545-48564 | Msa1420530:intron | 25.0% |
| ! | CTGAATCTTGATTTCTTAAT+TGG | - | tig0024822:48728-48747 | Msa1420530:intron | 25.0% |
| ! | TACATGAATAACAACATACA+TGG | + | tig0024822:48777-48796 | None:intergenic | 25.0% |
| !!! | TTTTGAGAAGCAATTTGAAT+TGG | - | tig0024822:49074-49093 | Msa1420530:intron | 25.0% |
| ! | AATGAATAAAATGATAGGCT+AGG | + | tig0024822:49255-49274 | None:intergenic | 25.0% |
| !!! | TTGTTTACTCTTTCAAGTTT+GGG | - | tig0024822:49332-49351 | Msa1420530:intron | 25.0% |
| ! | ATTTGTTTGCTTGTAATTGA+TGG | - | tig0024822:49478-49497 | Msa1420530:intron | 25.0% |
| !!! | ATTGTTTCTACTTTTATGAC+AGG | - | tig0024822:49531-49550 | Msa1420530:intron | 25.0% |
| !! | TTAAAATAGGTTGGCAAATA+TGG | + | tig0024822:49663-49682 | None:intergenic | 25.0% |
| !! | ATATTTGCCAACCTATTTTA+AGG | - | tig0024822:49662-49681 | Msa1420530:intron | 25.0% |
| !!! | TTGTGGTTATATTTTTGGAA+AGG | + | tig0024822:49717-49736 | None:intergenic | 25.0% |
| !! | AAGTTCATCTTTTAATCTCT+AGG | + | tig0024822:49770-49789 | None:intergenic | 25.0% |
| ! | AGATTTAACAAAACCTATTC+CGG | + | tig0024822:50064-50083 | None:intergenic | 25.0% |
| !!! | TAGGTTTTGTTAAATCTACA+TGG | - | tig0024822:50067-50086 | Msa1420530:CDS | 25.0% |
| ! | TGAAAAACTGATAAAACATC+AGG | + | tig0024822:50642-50661 | None:intergenic | 25.0% |
| !!! | AGTTTTTCAACGAACTTAAA+TGG | - | tig0024822:50653-50672 | Msa1420530:intron | 25.0% |
| ! | TATTATGATAAAGGTTCCAA+TGG | - | tig0024822:51243-51262 | Msa1420530:five_prime_UTR | 25.0% |
| ! | ATTATGATAAAGGTTCCAAT+GGG | - | tig0024822:51244-51263 | Msa1420530:five_prime_UTR | 25.0% |
| !! | TCTAATAGTTTTTGCTTACA+AGG | - | tig0024822:51271-51290 | Msa1420530:five_prime_UTR | 25.0% |
| ! | GTGTTGGTATTAAATAGTGA+GGG | - | tig0024822:47714-47733 | Msa1420530:three_prime_UTR | 30.0% |
| ATCAGTTAGTTACAGTTACA+GGG | + | tig0024822:47914-47933 | None:intergenic | 30.0% | |
| AATCAGTTAGTTACAGTTAC+AGG | + | tig0024822:47915-47934 | None:intergenic | 30.0% | |
| ATTGCAGATGGAATGTTTAA+GGG | - | tig0024822:48078-48097 | Msa1420530:CDS | 30.0% | |
| ATGTTTAAGGGAATCTACAA+TGG | - | tig0024822:48090-48109 | Msa1420530:intron | 30.0% | |
| AAGTGTTTGTAAATGTGACT+TGG | - | tig0024822:48522-48541 | Msa1420530:intron | 30.0% | |
| !! | TTTTCAGGATCTTTTGTCAT+TGG | - | tig0024822:48590-48609 | Msa1420530:CDS | 30.0% |
| AATCAAGATTCAGAACTATG+TGG | + | tig0024822:48721-48740 | None:intergenic | 30.0% | |
| !! | TTTCTTTTTCATATGCAAGG+TGG | - | tig0024822:48870-48889 | Msa1420530:CDS | 30.0% |
| ! | TATGTACCTCTTTTGAATCT+CGG | + | tig0024822:48947-48966 | None:intergenic | 30.0% |
| AAAGTAACATGTATAGCAAC+AGG | + | tig0024822:48977-48996 | None:intergenic | 30.0% | |
| AGAAATGAACTTGATCGTAA+GGG | - | tig0024822:49278-49297 | Msa1420530:intron | 30.0% | |
| TAAACAACATAGCTAAGGTT+TGG | + | tig0024822:49319-49338 | None:intergenic | 30.0% | |
| AAGAGTAAACAACATAGCTA+AGG | + | tig0024822:49324-49343 | None:intergenic | 30.0% | |
| !! | GTTGTTTACTCTTTCAAGTT+TGG | - | tig0024822:49331-49350 | Msa1420530:intron | 30.0% |
| ATTTATGAAGCGTGTATATC+AGG | + | tig0024822:49442-49461 | None:intergenic | 30.0% | |
| ! | AATTGATGGCATAATCACTT+TGG | - | tig0024822:49492-49511 | Msa1420530:intron | 30.0% |
| ! | ATTGATGGCATAATCACTTT+GGG | - | tig0024822:49493-49512 | Msa1420530:intron | 30.0% |
| ! | TATGGTAATGCTTGAAAAGA+TGG | + | tig0024822:49645-49664 | None:intergenic | 30.0% |
| GCAAGATAAAAGTTTACTTG+TGG | + | tig0024822:49734-49753 | None:intergenic | 30.0% | |
| CCAGAAATGTGTATCATTTA+TGG | + | tig0024822:49913-49932 | None:intergenic | 30.0% | |
| CCATAAATGATACACATTTC+TGG | - | tig0024822:49910-49929 | Msa1420530:CDS | 30.0% | |
| TACTTCTCTTTCTTCTTAGA+AGG | + | tig0024822:50093-50112 | None:intergenic | 30.0% | |
| GATCAAGATTGTATTGTCAA+AGG | - | tig0024822:50114-50133 | Msa1420530:intron | 30.0% | |
| AGTCAATCAGACATATTTCT+AGG | + | tig0024822:50314-50333 | None:intergenic | 30.0% | |
| ATTGATCCTATGTGTTTGTT+GGG | - | tig0024822:50489-50508 | Msa1420530:intron | 30.0% | |
| CAAATTTGAATCTGACTAGT+GGG | - | tig0024822:50612-50631 | Msa1420530:intron | 30.0% | |
| !! | TTATATATTCTGAAGCTCCA+AGG | - | tig0024822:50872-50891 | Msa1420530:CDS | 30.0% |
| TGTAATCTCTCTCAAGAATT+GGG | + | tig0024822:51053-51072 | None:intergenic | 30.0% | |
| ! | ACATTTTCAGATTCACTTCA+AGG | + | tig0024822:51082-51101 | None:intergenic | 30.0% |
| !!! | ATGTTTTTACTGCTACTTTG+CGG | - | tig0024822:51098-51117 | Msa1420530:intron | 30.0% |
| !! | GGTGTTGGTATTAAATAGTG+AGG | - | tig0024822:47713-47732 | Msa1420530:three_prime_UTR | 35.0% |
| !! | AAGATGAAGTGCTGAACATT+CGG | + | tig0024822:47754-47773 | None:intergenic | 35.0% |
| ! | GATATTGCTGTTAACTTCAC+AGG | - | tig0024822:47972-47991 | Msa1420530:three_prime_UTR | 35.0% |
| CATTGCAGATGGAATGTTTA+AGG | - | tig0024822:48077-48096 | Msa1420530:CDS | 35.0% | |
| !! | AACTGTTTTGAACAGAGCTT+GGG | - | tig0024822:48140-48159 | Msa1420530:intron | 35.0% |
| !!! | GGAAGACTTTTTTGTACTGT+TGG | - | tig0024822:48427-48446 | Msa1420530:intron | 35.0% |
| !! | TATTTTTACCTGCAGTGGTT+TGG | - | tig0024822:48495-48514 | Msa1420530:intron | 35.0% |
| !!! | GTGACTTGGTGTTTTGATTT+AGG | - | tig0024822:48536-48555 | Msa1420530:intron | 35.0% |
| ATTTAGGAATTTGAGGAGAG+TGG | - | tig0024822:48552-48571 | Msa1420530:intron | 35.0% | |
| !!! | AGATCCAGAAAAGCATTTTC+AGG | - | tig0024822:48575-48594 | Msa1420530:intron | 35.0% |
| ! | AGATCCTGAAAATGCTTTTC+TGG | + | tig0024822:48582-48601 | None:intergenic | 35.0% |
| !! | TCTTTTGTCATTGGCTAAAG+AGG | - | tig0024822:48599-48618 | Msa1420530:CDS | 35.0% |
| !! | CTTTTGTCATTGGCTAAAGA+GGG | - | tig0024822:48600-48619 | Msa1420530:CDS | 35.0% |
| !! | TGTTGTTGTTTGTGAATGCT+AGG | - | tig0024822:49049-49068 | Msa1420530:intron | 35.0% |
| TGGTTGAGAAACATAAAGAC+AGG | - | tig0024822:49160-49179 | Msa1420530:intron | 35.0% | |
| GAGAAATGAACTTGATCGTA+AGG | - | tig0024822:49277-49296 | Msa1420530:intron | 35.0% | |
| !! | CTACTCGTTTTGATGGATAT+CGG | + | tig0024822:49385-49404 | None:intergenic | 35.0% |
| !! | AATCACTTTGGGATGTGAAA+TGG | - | tig0024822:49504-49523 | Msa1420530:intron | 35.0% |
| ! | TACTTTTATGACAGGTTCTC+TGG | - | tig0024822:49539-49558 | Msa1420530:intron | 35.0% |
| CATACTACCGGTAAATGAAT+GGG | + | tig0024822:49573-49592 | None:intergenic | 35.0% | |
| AATGCAATCATCCATACTAC+CGG | + | tig0024822:49585-49604 | None:intergenic | 35.0% | |
| ! | ATACTAGGGTGCCTTAAAAT+AGG | + | tig0024822:49676-49695 | None:intergenic | 35.0% |
| GACAAAGATAGACATGTGAA+TGG | - | tig0024822:49845-49864 | Msa1420530:CDS | 35.0% | |
| TCAATCATCATTCTCTCAAC+AGG | + | tig0024822:50003-50022 | None:intergenic | 35.0% | |
| GTATTCTTGATTTCGCAGTA+GGG | + | tig0024822:50036-50055 | None:intergenic | 35.0% | |
| AGTATTCTTGATTTCGCAGT+AGG | + | tig0024822:50037-50056 | None:intergenic | 35.0% | |
| GAAATCAAGAATACTCATGC+CGG | - | tig0024822:50042-50061 | Msa1420530:intron | 35.0% | |
| !! | CATGGTTTTGCTTATCAATG+TGG | - | tig0024822:50169-50188 | Msa1420530:intron | 35.0% |
| ATCAATGTGGCAATACTTCA+AGG | - | tig0024822:50182-50201 | Msa1420530:intron | 35.0% | |
| CATTGATCCTATGTGTTTGT+TGG | - | tig0024822:50488-50507 | Msa1420530:intron | 35.0% | |
| ! | TCTTTTCCCAACAAACACAT+AGG | + | tig0024822:50498-50517 | None:intergenic | 35.0% |
| TAAATAGGAACACCTACTGA+CGG | - | tig0024822:50548-50567 | Msa1420530:CDS | 35.0% | |
| AATTTGGTCCAGCCTAAATT+TGG | + | tig0024822:50598-50617 | None:intergenic | 35.0% | |
| CCACTAGTCAGATTCAAATT+TGG | + | tig0024822:50614-50633 | None:intergenic | 35.0% | |
| CCAAATTTGAATCTGACTAG+TGG | - | tig0024822:50611-50630 | Msa1420530:intron | 35.0% | |
| ACTCTTGGCATCTAATAACT+AGG | + | tig0024822:50688-50707 | None:intergenic | 35.0% | |
| !! | GGCATAACAATTGACTCTTT+TGG | - | tig0024822:50806-50825 | Msa1420530:CDS | 35.0% |
| ! | CTGCAAAGCAATATTTTCCT+TGG | + | tig0024822:50892-50911 | None:intergenic | 35.0% |
| CAAGGAAAATATTGCTTTGC+AGG | - | tig0024822:50890-50909 | Msa1420530:CDS | 35.0% | |
| GTAATCTCTCTCAAGAATTG+GGG | + | tig0024822:51052-51071 | None:intergenic | 35.0% | |
| GTGTAATCTCTCTCAAGAAT+TGG | + | tig0024822:51054-51073 | None:intergenic | 35.0% | |
| !!! | TGTTTTTACTGCTACTTTGC+GGG | - | tig0024822:51099-51118 | Msa1420530:intron | 35.0% |
| AAACTATTAGAACTGCCCAT+TGG | + | tig0024822:51262-51281 | None:intergenic | 35.0% | |
| ! | TTTTGCTTACAAGGATGCAT+TGG | - | tig0024822:51280-51299 | Msa1420530:five_prime_UTR | 35.0% |
| CACTTCATCTTCTTCTTCTG+TGG | - | tig0024822:47763-47782 | Msa1420530:three_prime_UTR | 40.0% | |
| CAAGCTCTGTTCAAAACAGT+TGG | + | tig0024822:48141-48160 | None:intergenic | 40.0% | |
| !! | CAACTGTTTTGAACAGAGCT+TGG | - | tig0024822:48139-48158 | Msa1420530:intron | 40.0% |
| ATCCACCAGTTACGATGATT+CGG | + | tig0024822:48179-48198 | None:intergenic | 40.0% | |
| CAAACCATCAGTTTCAGCAA+TGG | + | tig0024822:48229-48248 | None:intergenic | 40.0% | |
| AAATCAACCTTGCAACGTGT+TGG | + | tig0024822:48460-48479 | None:intergenic | 40.0% | |
| !! | TTCGGTATTTTTACCTGCAG+TGG | - | tig0024822:48490-48509 | Msa1420530:intron | 40.0% |
| GCTAAAGAGGGAATTCAGAA+AGG | - | tig0024822:48612-48631 | Msa1420530:CDS | 40.0% | |
| AGAGGGAATTCAGAAAGGAA+AGG | - | tig0024822:48617-48636 | Msa1420530:CDS | 40.0% | |
| GATTCAGAACTATGTGGATC+TGG | + | tig0024822:48715-48734 | None:intergenic | 40.0% | |
| !! | AGTGTGGATTAGACTATGAC+CGG | - | tig0024822:48905-48924 | Msa1420530:CDS | 40.0% |
| AGCTGCAGATTTCTGTGAAA+TGG | - | tig0024822:49140-49159 | Msa1420530:intron | 40.0% | |
| AAAATGATAGGCTAGGCAAG+AGG | + | tig0024822:49248-49267 | None:intergenic | 40.0% | |
| !! | TCTTTCAAGTTTGGGAGTTG+AGG | - | tig0024822:49340-49359 | Msa1420530:intron | 40.0% |
| !! | CTTTCAAGTTTGGGAGTTGA+GGG | - | tig0024822:49341-49360 | Msa1420530:intron | 40.0% |
| ! | CTCAATGCTACTCGTTTTGA+TGG | + | tig0024822:49392-49411 | None:intergenic | 40.0% |
| CATCAAAACGAGTAGCATTG+AGG | - | tig0024822:49390-49409 | Msa1420530:CDS | 40.0% | |
| AAGCGTGTATATCAGGTATG+AGG | + | tig0024822:49435-49454 | None:intergenic | 40.0% | |
| ! | TTTTATGACAGGTTCTCTGG+TGG | - | tig0024822:49542-49561 | Msa1420530:intron | 40.0% |
| CCATACTACCGGTAAATGAA+TGG | + | tig0024822:49574-49593 | None:intergenic | 40.0% | |
| CCATTCATTTACCGGTAGTA+TGG | - | tig0024822:49571-49590 | Msa1420530:intron | 40.0% | |
| ! | TAGGGTGCCTTAAAATAGGT+TGG | + | tig0024822:49672-49691 | None:intergenic | 40.0% |
| TGAGAACCTTGATGTTGTCA+AGG | - | tig0024822:49972-49991 | Msa1420530:intron | 40.0% | |
| GAGAACCTTGATGTTGTCAA+GGG | - | tig0024822:49973-49992 | Msa1420530:intron | 40.0% | |
| GAATACCCTTGACAACATCA+AGG | + | tig0024822:49981-50000 | None:intergenic | 40.0% | |
| AAGAATACTCATGCCGGAAT+AGG | - | tig0024822:50048-50067 | Msa1420530:intron | 40.0% | |
| ! | GCCTTGTTCAGTTAGGTAAA+TGG | - | tig0024822:50146-50165 | Msa1420530:intron | 40.0% |
| GCCATTTACCTAACTGAACA+AGG | + | tig0024822:50150-50169 | None:intergenic | 40.0% | |
| GTTCAGTTAGGTAAATGGCA+TGG | - | tig0024822:50151-50170 | Msa1420530:intron | 40.0% | |
| CTGATTGACTGTAATGTTCC+AGG | - | tig0024822:50324-50343 | Msa1420530:intron | 40.0% | |
| !! | TGTAAAGGCATCAATGACGT+GGG | - | tig0024822:50371-50390 | Msa1420530:intron | 40.0% |
| ! | TATGTTACCTGCAAGTGTTG+TGG | + | tig0024822:50418-50437 | None:intergenic | 40.0% |
| ! | GTGATCACTTGCATTGGTAA+CGG | + | tig0024822:50459-50478 | None:intergenic | 40.0% |
| CTACAAGTGATCACTTGCAT+TGG | + | tig0024822:50465-50484 | None:intergenic | 40.0% | |
| AAATAGGAACACCTACTGAC+GGG | - | tig0024822:50549-50568 | Msa1420530:CDS | 40.0% | |
| AATTTGGCACAGGTCAAGAT+GGG | + | tig0024822:50582-50601 | None:intergenic | 40.0% | |
| AAATTTGGCACAGGTCAAGA+TGG | + | tig0024822:50583-50602 | None:intergenic | 40.0% | |
| TCTTGACCTGTGCCAAATTT+AGG | - | tig0024822:50583-50602 | Msa1420530:intron | 40.0% | |
| ! | TTTGAATCTGACTAGTGGGT+TGG | - | tig0024822:50616-50635 | Msa1420530:intron | 40.0% |
| TAGATGCCAAGAGTCTTGAT+TGG | - | tig0024822:50694-50713 | Msa1420530:intron | 40.0% | |
| CTACAGGAGAAAAGGATCGA+TGG | + | tig0024822:47807-47826 | None:intergenic | 45.0% | |
| ! | GATCCTTTTCTCCTGTAGTG+AGG | - | tig0024822:47809-47828 | Msa1420530:three_prime_UTR | 45.0% |
| TCACCTCACTACAGGAGAAA+AGG | + | tig0024822:47815-47834 | None:intergenic | 45.0% | |
| AAGCAGACATGGCAGCTATT+CGG | - | tig0024822:47842-47861 | Msa1420530:three_prime_UTR | 45.0% | |
| ATGGCAGCTATTCGGATGAT+AGG | - | tig0024822:47850-47869 | Msa1420530:three_prime_UTR | 45.0% | |
| GTTCACCGAATCATCGTAAC+TGG | - | tig0024822:48171-48190 | Msa1420530:intron | 45.0% | |
| TGGATCCCTTCAGGAATCAA+GGG | - | tig0024822:48194-48213 | Msa1420530:intron | 45.0% | |
| AGCTTCCCTTGATTCCTGAA+GGG | + | tig0024822:48202-48221 | None:intergenic | 45.0% | |
| CTTGCCATTGCTGAAACTGA+TGG | - | tig0024822:48222-48241 | Msa1420530:intron | 45.0% | |
| ! | TTTACCTGCAGTGGTTTGGA+TGG | - | tig0024822:48499-48518 | Msa1420530:intron | 45.0% |
| GTAACTAGATGTGCTTGAGC+AGG | - | tig0024822:48689-48708 | Msa1420530:intron | 45.0% | |
| ATATGCAAGGTGGTTGCAGT+TGG | - | tig0024822:48880-48899 | Msa1420530:CDS | 45.0% | |
| ! | TACCTCTTTTGAATCTCGGC+GGG | + | tig0024822:48943-48962 | None:intergenic | 45.0% |
| ! | GTACCTCTTTTGAATCTCGG+CGG | + | tig0024822:48944-48963 | None:intergenic | 45.0% |
| GCTCGCATGTGCAAAAACAT+AGG | + | tig0024822:49117-49136 | None:intergenic | 45.0% | |
| ! | GGTGTCACCCATTCATTTAC+CGG | - | tig0024822:49563-49582 | Msa1420530:intron | 45.0% |
| !! | CACATTTCTGGTACACTGAC+AGG | - | tig0024822:49922-49941 | Msa1420530:intron | 45.0% |
| GGTACACTGACAGGCATAAA+TGG | - | tig0024822:49931-49950 | Msa1420530:intron | 45.0% | |
| !! | GCAATGAGCCTTGTTCAGTT+AGG | - | tig0024822:50139-50158 | Msa1420530:intron | 45.0% |
| ATGTTCCAGGCAAGTTCTTG+AGG | - | tig0024822:50337-50356 | Msa1420530:intron | 45.0% | |
| !! | CTGTAAAGGCATCAATGACG+TGG | - | tig0024822:50370-50389 | Msa1420530:intron | 45.0% |
| TGTGGTACAATGTTCTACCG+AGG | + | tig0024822:50400-50419 | None:intergenic | 45.0% | |
| CATTGTACCACAACACTTGC+AGG | - | tig0024822:50408-50427 | Msa1420530:CDS | 45.0% | |
| ! | CAGGTAACATAGCTTGTCTC+TGG | - | tig0024822:50427-50446 | Msa1420530:CDS | 45.0% |
| ATGCCAAGAGTCTTGATTGG+TGG | - | tig0024822:50697-50716 | Msa1420530:intron | 45.0% | |
| AGTCCACCAATCAAGACTCT+TGG | + | tig0024822:50703-50722 | None:intergenic | 45.0% | |
| !! | TTGATTGGTGGACTGCATCT+TGG | - | tig0024822:50709-50728 | Msa1420530:intron | 45.0% |
| ! | GATGTTTTTCCCGCATGACT+TGG | - | tig0024822:50912-50931 | Msa1420530:intron | 45.0% |
| TCTCTCTCAAGAATTGGGGA+TGG | + | tig0024822:51048-51067 | None:intergenic | 45.0% | |
| TCGTTGCTTCACCTCACTAC+AGG | + | tig0024822:47823-47842 | None:intergenic | 50.0% | |
| GTGAAGCAACGAAGCAGACA+TGG | - | tig0024822:47831-47850 | Msa1420530:three_prime_UTR | 50.0% | |
| CACCGAATCATCGTAACTGG+TGG | - | tig0024822:48174-48193 | Msa1420530:intron | 50.0% | |
| GTGGATCCCTTCAGGAATCA+AGG | - | tig0024822:48193-48212 | Msa1420530:intron | 50.0% | |
| GAGCTTCCCTTGATTCCTGA+AGG | + | tig0024822:48203-48222 | None:intergenic | 50.0% | |
| TGTGCATCCAACACGTTGCA+AGG | - | tig0024822:48450-48469 | Msa1420530:intron | 50.0% | |
| ACTTCCATCCAAACCACTGC+AGG | + | tig0024822:48506-48525 | None:intergenic | 50.0% | |
| ! | ACCTCTTTTGAATCTCGGCG+GGG | + | tig0024822:48942-48961 | None:intergenic | 50.0% |
| TTCCAGGCAAGTTCTTGAGG+TGG | - | tig0024822:50340-50359 | Msa1420530:intron | 50.0% | |
| AACCACCTCAAGAACTTGCC+TGG | + | tig0024822:50345-50364 | None:intergenic | 50.0% | |
| CAAGTTCTTGAGGTGGTTGC+TGG | - | tig0024822:50347-50366 | Msa1420530:intron | 50.0% | |
| ATCAATGACGTGGGTAGCCT+CGG | - | tig0024822:50380-50399 | Msa1420530:CDS | 50.0% | |
| GACCTGTGCCAAATTTAGGC+TGG | - | tig0024822:50587-50606 | Msa1420530:intron | 50.0% | |
| GTCCAGCCTAAATTTGGCAC+AGG | + | tig0024822:50592-50611 | None:intergenic | 50.0% | |
| TTGAACAGAGCTTGGGCTGC+TGG | - | tig0024822:48147-48166 | Msa1420530:intron | 55.0% | |
| ! | CGTAACTGGTGGATCCCTTC+AGG | - | tig0024822:48185-48204 | Msa1420530:intron | 55.0% |
| GTGGTTGCAGTTGGAGAGTG+TGG | - | tig0024822:48889-48908 | Msa1420530:CDS | 55.0% | |
| ! | GAGGTGGTTGCTGGCTGTAA+AGG | - | tig0024822:50356-50375 | Msa1420530:intron | 55.0% |
| CCGCAGAATCCAAGTCATGC+GGG | + | tig0024822:50924-50943 | None:intergenic | 55.0% | |
| ! | CCCGCATGACTTGGATTCTG+CGG | - | tig0024822:50921-50940 | Msa1420530:intron | 55.0% |
| GCCGCAGAATCCAAGTCATG+CGG | + | tig0024822:50925-50944 | None:intergenic | 55.0% | |
| ! | GCGGCTGATGCTCTTTTAGC+TGG | - | tig0024822:50940-50959 | Msa1420530:intron | 55.0% |
| CGGCGGGGCAAAAATGAAGC+CGG | + | tig0024822:48927-48946 | None:intergenic | 60.0% | |
| GCCCCGCCGAGATTCAAAAG+AGG | - | tig0024822:48938-48957 | Msa1420530:CDS | 60.0% | |
| TGGGATTCACGCCCGTCAGT+AGG | + | tig0024822:50563-50582 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0024822 | gene | 47702 | 51309 | 47702 | ID=Msa1420530;Name=Msa1420530 |
| tig0024822 | mRNA | 47702 | 51309 | 47702 | ID=Msa1420530-mRNA-1;Parent=Msa1420530;Name=Msa1420530-mRNA-1;_AED=0.13;_eAED=0.13;_QI=148|1|1|1|1|1|11|331|319 |
| tig0024822 | exon | 47702 | 48099 | 47702 | ID=Msa1420530-mRNA-1:exon:1582;Parent=Msa1420530-mRNA-1 |
| tig0024822 | exon | 48582 | 48665 | 48582 | ID=Msa1420530-mRNA-1:exon:1581;Parent=Msa1420530-mRNA-1 |
| tig0024822 | exon | 48851 | 49067 | 48851 | ID=Msa1420530-mRNA-1:exon:1580;Parent=Msa1420530-mRNA-1 |
| tig0024822 | exon | 49376 | 49458 | 49376 | ID=Msa1420530-mRNA-1:exon:1579;Parent=Msa1420530-mRNA-1 |
| tig0024822 | exon | 49830 | 49940 | 49830 | ID=Msa1420530-mRNA-1:exon:1578;Parent=Msa1420530-mRNA-1 |
| tig0024822 | exon | 50052 | 50122 | 50052 | ID=Msa1420530-mRNA-1:exon:1577;Parent=Msa1420530-mRNA-1 |
| tig0024822 | exon | 50373 | 50453 | 50373 | ID=Msa1420530-mRNA-1:exon:1576;Parent=Msa1420530-mRNA-1 |
| tig0024822 | exon | 50540 | 50583 | 50540 | ID=Msa1420530-mRNA-1:exon:1575;Parent=Msa1420530-mRNA-1 |
| tig0024822 | exon | 50768 | 50926 | 50768 | ID=Msa1420530-mRNA-1:exon:1574;Parent=Msa1420530-mRNA-1 |
| tig0024822 | exon | 51018 | 51038 | 51018 | ID=Msa1420530-mRNA-1:exon:1573;Parent=Msa1420530-mRNA-1 |
| tig0024822 | exon | 51140 | 51309 | 51140 | ID=Msa1420530-mRNA-1:exon:1572;Parent=Msa1420530-mRNA-1 |
| tig0024822 | five_prime_UTR | 51162 | 51309 | 51162 | ID=Msa1420530-mRNA-1:five_prime_utr;Parent=Msa1420530-mRNA-1 |
| tig0024822 | CDS | 51140 | 51161 | 51140 | ID=Msa1420530-mRNA-1:cds;Parent=Msa1420530-mRNA-1 |
| tig0024822 | CDS | 51018 | 51038 | 51018 | ID=Msa1420530-mRNA-1:cds;Parent=Msa1420530-mRNA-1 |
| tig0024822 | CDS | 50768 | 50926 | 50768 | ID=Msa1420530-mRNA-1:cds;Parent=Msa1420530-mRNA-1 |
| tig0024822 | CDS | 50540 | 50583 | 50540 | ID=Msa1420530-mRNA-1:cds;Parent=Msa1420530-mRNA-1 |
| tig0024822 | CDS | 50373 | 50453 | 50373 | ID=Msa1420530-mRNA-1:cds;Parent=Msa1420530-mRNA-1 |
| tig0024822 | CDS | 50052 | 50122 | 50052 | ID=Msa1420530-mRNA-1:cds;Parent=Msa1420530-mRNA-1 |
| tig0024822 | CDS | 49830 | 49940 | 49830 | ID=Msa1420530-mRNA-1:cds;Parent=Msa1420530-mRNA-1 |
| tig0024822 | CDS | 49376 | 49458 | 49376 | ID=Msa1420530-mRNA-1:cds;Parent=Msa1420530-mRNA-1 |
| tig0024822 | CDS | 48851 | 49067 | 48851 | ID=Msa1420530-mRNA-1:cds;Parent=Msa1420530-mRNA-1 |
| tig0024822 | CDS | 48582 | 48665 | 48582 | ID=Msa1420530-mRNA-1:cds;Parent=Msa1420530-mRNA-1 |
| tig0024822 | CDS | 48033 | 48099 | 48033 | ID=Msa1420530-mRNA-1:cds;Parent=Msa1420530-mRNA-1 |
| tig0024822 | three_prime_UTR | 47702 | 48032 | 47702 | ID=Msa1420530-mRNA-1:three_prime_utr;Parent=Msa1420530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
