Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1080830 | XP_013450227.1 | 98.433 | 319 | 5 | 0 | 1 | 319 | 1 | 319 | 0.0 | 658 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1080830 | sp|Q640V9|TATD1_XENLA | 50.662 | 302 | 142 | 5 | 1 | 302 | 1 | 295 | 7.99e-109 | 321 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1080830 | A0A072UEM8 | 98.433 | 319 | 5 | 0 | 1 | 319 | 1 | 319 | 0.0 | 658 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000790 | Msa1080830 | 0.845728 | 3.388379e-59 | -8.615850e-47 |
| Msa1080830 | Msa1118970 | 0.890380 | 1.038534e-73 | -8.615850e-47 |
| Msa1080830 | Msa1420530 | 0.929309 | 8.354969e-93 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1080830 | MtrunA17_Chr7g0267561 | 98.433 | 319 | 5 | 0 | 1 | 319 | 1 | 319 | 0.0 | 658 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1080830 | AT3G52390.1 | 80.878 | 319 | 61 | 0 | 1 | 319 | 1 | 319 | 0.0 | 556 |
| Msa1080830 | AT3G52390.2 | 80.124 | 322 | 61 | 1 | 1 | 319 | 1 | 322 | 0.0 | 550 |
Find 82 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTGCAGATGGAATGTTTA+AGG | 0.179710 | 7_2:+80539671 | Msa1080830:intron |
| CCATTCATTTACCGGTAGTA+TGG | 0.274416 | 7_2:+80541165 | Msa1080830:CDS |
| GGTACACTGACAGGCATAAA+TGG | 0.296686 | 7_2:+80541525 | Msa1080830:intron |
| TACTTCTCTTTCTTCTTAGA+AGG | 0.309073 | 7_2:-80541684 | None:intergenic |
| CAAGTTCTTGAGGTGGTTGC+TGG | 0.314482 | 7_2:+80541941 | Msa1080830:CDS |
| GTGTAATCTCTCTCAAGAAT+TGG | 0.339719 | 7_2:-80542645 | None:intergenic |
| TGTAATCTCTCTCAAGAATT+GGG | 0.341746 | 7_2:-80542644 | None:intergenic |
| AAACAAAACTATTATGATAA+AGG | 0.353733 | 7_2:+80542828 | Msa1080830:three_prime_UTR |
| AGATTTAACAAAACCTATTC+CGG | 0.363419 | 7_2:-80541655 | None:intergenic |
| CGTAACTGGTGGATCCCTTC+AGG | 0.367497 | 7_2:+80539779 | Msa1080830:CDS |
| AAGAATACTCATGCCGGAAT+AGG | 0.370394 | 7_2:+80541642 | Msa1080830:CDS |
| TGTTTACGATATAAAATTGT+TGG | 0.376504 | 7_2:+80539284 | None:intergenic |
| TTGAACAGAGCTTGGGCTGC+TGG | 0.381184 | 7_2:+80539741 | Msa1080830:CDS |
| TCAATCATCATTCTCTCAAC+AGG | 0.397537 | 7_2:-80541594 | None:intergenic |
| GGTGTCACCCATTCATTTAC+CGG | 0.403791 | 7_2:+80541157 | Msa1080830:CDS |
| CATTGTACCACAACACTTGC+AGG | 0.406974 | 7_2:+80542002 | Msa1080830:CDS |
| ATTGCAGATGGAATGTTTAA+GGG | 0.415859 | 7_2:+80539672 | Msa1080830:intron |
| CCATACTACCGGTAAATGAA+TGG | 0.419461 | 7_2:-80541165 | None:intergenic |
| ATTTAGGAATTTGAGGAGAG+TGG | 0.434545 | 7_2:+80540146 | Msa1080830:intron |
| GTTCACCGAATCATCGTAAC+TGG | 0.440208 | 7_2:+80539765 | Msa1080830:CDS |
| GTTTACGATATAAAATTGTT+GGG | 0.441361 | 7_2:+80539285 | None:intergenic |
| GATATTGCTGTTAACTTCAC+AGG | 0.448944 | 7_2:+80539566 | Msa1080830:intron |
| AAGCAGACATGGCAGCTATT+CGG | 0.450967 | 7_2:+80539436 | Msa1080830:exon |
| ATATAAAATTGTTGGGGTGT+TGG | 0.451544 | 7_2:+80539292 | None:intergenic |
| AGCTGCAGATTTCTGTGAAA+TGG | 0.453615 | 7_2:+80540734 | Msa1080830:CDS |
| ATGGCAGCTATTCGGATGAT+AGG | 0.456359 | 7_2:+80539444 | Msa1080830:CDS |
| AGTATTCTTGATTTCGCAGT+AGG | 0.457640 | 7_2:-80541628 | None:intergenic |
| CACTTCATCTTCTTCTTCTG+TGG | 0.463893 | 7_2:+80539357 | Msa1080830:five_prime_UTR |
| GTGGATCCCTTCAGGAATCA+AGG | 0.468309 | 7_2:+80539787 | Msa1080830:CDS |
| GAGGTGGTTGCTGGCTGTAA+AGG | 0.472385 | 7_2:+80541950 | Msa1080830:CDS |
| GCAATGAGCCTTGTTCAGTT+AGG | 0.474293 | 7_2:+80541733 | Msa1080830:CDS |
| TCGTTGCTTCACCTCACTAC+AGG | 0.480936 | 7_2:-80539414 | None:intergenic |
| CTTGCCATTGCTGAAACTGA+TGG | 0.480998 | 7_2:+80539816 | Msa1080830:CDS |
| AAGATGAAGTGCTGAACATT+CGG | 0.482462 | 7_2:-80539345 | None:intergenic |
| ATCCACCAGTTACGATGATT+CGG | 0.484521 | 7_2:-80539770 | None:intergenic |
| TCACCTCACTACAGGAGAAA+AGG | 0.489765 | 7_2:-80539406 | None:intergenic |
| TATTATGATAAAGGTTCCAA+TGG | 0.499165 | 7_2:+80542837 | Msa1080830:three_prime_UTR |
| ATATGCAAGGTGGTTGCAGT+TGG | 0.510781 | 7_2:+80540474 | Msa1080830:intron |
| GGTGTTGGTATTAAATAGTG+AGG | 0.512050 | 7_2:+80539307 | Msa1080830:five_prime_UTR |
| ATCAATGACGTGGGTAGCCT+CGG | 0.515221 | 7_2:+80541974 | Msa1080830:CDS |
| CATACTACCGGTAAATGAAT+GGG | 0.528644 | 7_2:-80541164 | None:intergenic |
| GAGCTTCCCTTGATTCCTGA+AGG | 0.541070 | 7_2:-80539794 | None:intergenic |
| AAATCAACCTTGCAACGTGT+TGG | 0.542834 | 7_2:-80540051 | None:intergenic |
| CCCGCATGACTTGGATTCTG+CGG | 0.544613 | 7_2:+80542515 | Msa1080830:CDS |
| ATGTTCCAGGCAAGTTCTTG+AGG | 0.547709 | 7_2:+80541931 | Msa1080830:intron |
| ATTATGATAAAGGTTCCAAT+GGG | 0.559221 | 7_2:+80542838 | Msa1080830:three_prime_UTR |
| GTGGTTGCAGTTGGAGAGTG+TGG | 0.563440 | 7_2:+80540483 | Msa1080830:CDS |
| GCCCCGCCGAGATTCAAAAG+AGG | 0.565535 | 7_2:+80540532 | Msa1080830:CDS |
| TGAGAACCTTGATGTTGTCA+AGG | 0.568216 | 7_2:+80541566 | Msa1080830:CDS |
| GTGAAGCAACGAAGCAGACA+TGG | 0.571755 | 7_2:+80539425 | Msa1080830:exon |
| CAAGCTCTGTTCAAAACAGT+TGG | 0.572850 | 7_2:-80539732 | None:intergenic |
| CTGTAAAGGCATCAATGACG+TGG | 0.573785 | 7_2:+80541964 | Msa1080830:CDS |
| TCATTTGATAAAATGTACAT+TGG | 0.575483 | 7_2:+80541208 | Msa1080830:CDS |
| GCTAAAGAGGGAATTCAGAA+AGG | 0.576535 | 7_2:+80540206 | Msa1080830:CDS |
| AATGCAATCATCCATACTAC+CGG | 0.579184 | 7_2:-80541176 | None:intergenic |
| GATCAAGATTGTATTGTCAA+AGG | 0.580228 | 7_2:+80541708 | Msa1080830:CDS |
| AGCTTCCCTTGATTCCTGAA+GGG | 0.580403 | 7_2:-80539793 | None:intergenic |
| AGTGTGGATTAGACTATGAC+CGG | 0.580933 | 7_2:+80540499 | Msa1080830:CDS |
| TTTACGATATAAAATTGTTG+GGG | 0.581314 | 7_2:+80539286 | None:intergenic |
| TTCCAGGCAAGTTCTTGAGG+TGG | 0.584211 | 7_2:+80541934 | Msa1080830:intron |
| CTACAGGAGAAAAGGATCGA+TGG | 0.585562 | 7_2:-80539398 | None:intergenic |
| AAACTATTAGAACTGCCCAT+TGG | 0.586072 | 7_2:-80542853 | None:intergenic |
| CCGCAGAATCCAAGTCATGC+GGG | 0.587287 | 7_2:-80542515 | None:intergenic |
| GAAATCAAGAATACTCATGC+CGG | 0.587360 | 7_2:+80541636 | Msa1080830:CDS |
| TGGTTGAGAAACATAAAGAC+AGG | 0.587924 | 7_2:+80540754 | Msa1080830:CDS |
| CACCGAATCATCGTAACTGG+TGG | 0.594177 | 7_2:+80539768 | Msa1080830:CDS |
| GTATTCTTGATTTCGCAGTA+GGG | 0.599813 | 7_2:-80541627 | None:intergenic |
| AGAGGGAATTCAGAAAGGAA+AGG | 0.606009 | 7_2:+80540211 | Msa1080830:CDS |
| TCTCTCTCAAGAATTGGGGA+TGG | 0.610326 | 7_2:-80542639 | None:intergenic |
| TGGATCCCTTCAGGAATCAA+GGG | 0.611907 | 7_2:+80539788 | Msa1080830:CDS |
| GCCATTTACCTAACTGAACA+AGG | 0.612592 | 7_2:-80541741 | None:intergenic |
| TGTGCATCCAACACGTTGCA+AGG | 0.614854 | 7_2:+80540044 | Msa1080830:CDS |
| GCCGCAGAATCCAAGTCATG+CGG | 0.616525 | 7_2:-80542516 | None:intergenic |
| GAGAACCTTGATGTTGTCAA+GGG | 0.622857 | 7_2:+80541567 | Msa1080830:CDS |
| GTAATCTCTCTCAAGAATTG+GGG | 0.629460 | 7_2:-80542643 | None:intergenic |
| ATGTTTAAGGGAATCTACAA+TGG | 0.631092 | 7_2:+80539684 | Msa1080830:CDS |
| GAATACCCTTGACAACATCA+AGG | 0.648280 | 7_2:-80541572 | None:intergenic |
| CAAACCATCAGTTTCAGCAA+TGG | 0.654081 | 7_2:-80539820 | None:intergenic |
| GTGTTGGTATTAAATAGTGA+GGG | 0.656889 | 7_2:+80539308 | Msa1080830:five_prime_UTR |
| TGTAAAGGCATCAATGACGT+GGG | 0.682265 | 7_2:+80541965 | Msa1080830:CDS |
| TATGTTACCTGCAAGTGTTG+TGG | 0.717422 | 7_2:-80542009 | None:intergenic |
| TGTGGTACAATGTTCTACCG+AGG | 0.734684 | 7_2:-80541991 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAATTATCATCAAAATT+AGG | - | chr7_2:80539982-80540001 | None:intergenic | 10.0% |
| !!! | AGTTTAATATTTTTTAAACA+GGG | - | chr7_2:80540601-80540620 | None:intergenic | 10.0% |
| !!! | TAGTTTAATATTTTTTAAAC+AGG | - | chr7_2:80540602-80540621 | None:intergenic | 10.0% |
| !!! | GTTTAATATTTTTTAAACAG+GGG | - | chr7_2:80540600-80540619 | None:intergenic | 15.0% |
| !!! | GAATATTTAAGATTTCAAAA+TGG | - | chr7_2:80540798-80540817 | None:intergenic | 15.0% |
| !! | AATCTTAAATATTCAAACAA+TGG | + | chr7_2:80540804-80540823 | Msa1080830:intron | 15.0% |
| !! | CTGATTATAAAAAGATAAAT+AGG | + | chr7_2:80542127-80542146 | Msa1080830:intron | 15.0% |
| !!! | TATCATAATAGTTTTGTTTT+TGG | - | chr7_2:80542827-80542846 | None:intergenic | 15.0% |
| !! | AAACAAAACTATTATGATAA+AGG | + | chr7_2:80542828-80542847 | Msa1080830:three_prime_UTR | 15.0% |
| !!! | GCATTTAATTAAGTTGTTTA+TGG | + | chr7_2:80539948-80539967 | Msa1080830:intron | 20.0% |
| !!! | TTAAGTTGTTTATGGAAATA+TGG | + | chr7_2:80539956-80539975 | Msa1080830:intron | 20.0% |
| !!! | TATTTCTAAAAATGCTTACT+TGG | - | chr7_2:80540430-80540449 | None:intergenic | 20.0% |
| !!! | TTTTTTCTTTTTCATATGCA+AGG | + | chr7_2:80540461-80540480 | Msa1080830:intron | 20.0% |
| !! | CTCAAAATGAATAAAATGAT+AGG | - | chr7_2:80540854-80540873 | None:intergenic | 20.0% |
| !! | TCATTTGATAAAATGTACAT+TGG | + | chr7_2:80541208-80541227 | Msa1080830:CDS | 20.0% |
| !!! | ATCTAAAATTAGACATACTA+GGG | - | chr7_2:80541284-80541303 | None:intergenic | 20.0% |
| !!! | AATCTAAAATTAGACATACT+AGG | - | chr7_2:80541285-80541304 | None:intergenic | 20.0% |
| !!! | TTTACTTGTGGTTATATTTT+TGG | - | chr7_2:80541316-80541335 | None:intergenic | 20.0% |
| !! | TTAAAAGATGAACTTACTTT+AGG | + | chr7_2:80541369-80541388 | Msa1080830:intron | 20.0% |
| !! | TATCATTTATGGAATTTAAC+TGG | - | chr7_2:80541496-80541515 | None:intergenic | 20.0% |
| !! | AAGATTAACAATCATATACA+GGG | - | chr7_2:80541860-80541879 | None:intergenic | 20.0% |
| !! | AAAGATTAACAATCATATAC+AGG | - | chr7_2:80541861-80541880 | None:intergenic | 20.0% |
| !!! | GATAGTCATTTAAAATATGA+AGG | - | chr7_2:80541886-80541905 | None:intergenic | 20.0% |
| !! | TTAATATGCTAATGTTTGAT+TGG | + | chr7_2:80542379-80542398 | Msa1080830:intron | 20.0% |
| !! | TTTATCAAACACTTTGTTTG+CGG | + | chr7_2:80539601-80539620 | Msa1080830:intron | 25.0% |
| ! | TATTTCAAAATCATTGCAGA+TGG | + | chr7_2:80539660-80539679 | Msa1080830:intron | 25.0% |
| ! | TTGATTGTTTGTTTGATCAT+AGG | + | chr7_2:80540000-80540019 | Msa1080830:intron | 25.0% |
| !!! | GTTGATTTTCTTTACTCTTT+CGG | + | chr7_2:80540066-80540085 | Msa1080830:intron | 25.0% |
| !!! | TGTTTTGATTTAGGAATTTG+AGG | + | chr7_2:80540139-80540158 | Msa1080830:intron | 25.0% |
| ! | CTGAATCTTGATTTCTTAAT+TGG | + | chr7_2:80540322-80540341 | Msa1080830:intron | 25.0% |
| ! | TACATGAATAACAACATACA+TGG | - | chr7_2:80540371-80540390 | None:intergenic | 25.0% |
| !!! | TTTTGAGAAGCAATTTGAAT+TGG | + | chr7_2:80540668-80540687 | Msa1080830:CDS | 25.0% |
| ! | AATGAATAAAATGATAGGCT+AGG | - | chr7_2:80540849-80540868 | None:intergenic | 25.0% |
| !!! | TTGTTTACTCTTTCAAGTTT+GGG | + | chr7_2:80540926-80540945 | Msa1080830:intron | 25.0% |
| ! | ATTTGTTTGCTTGTAATTGA+TGG | + | chr7_2:80541072-80541091 | Msa1080830:intron | 25.0% |
| !!! | ATTGTTTCTACTTTTATGAC+AGG | + | chr7_2:80541125-80541144 | Msa1080830:intron | 25.0% |
| !! | TTAAAATAGGTTGGCAAATA+TGG | - | chr7_2:80541257-80541276 | None:intergenic | 25.0% |
| !! | ATATTTGCCAACCTATTTTA+AGG | + | chr7_2:80541256-80541275 | Msa1080830:intron | 25.0% |
| !!! | TTGTGGTTATATTTTTGGAA+AGG | - | chr7_2:80541311-80541330 | None:intergenic | 25.0% |
| !! | AAGTTCATCTTTTAATCTCT+AGG | - | chr7_2:80541364-80541383 | None:intergenic | 25.0% |
| ! | AGATTTAACAAAACCTATTC+CGG | - | chr7_2:80541658-80541677 | None:intergenic | 25.0% |
| !!! | TAGGTTTTGTTAAATCTACA+TGG | + | chr7_2:80541661-80541680 | Msa1080830:CDS | 25.0% |
| ! | TGAAAAACTGATAAAACATC+AGG | - | chr7_2:80542236-80542255 | None:intergenic | 25.0% |
| !!! | AGTTTTTCAACGAACTTAAA+TGG | + | chr7_2:80542247-80542266 | Msa1080830:intron | 25.0% |
| ! | TATTATGATAAAGGTTCCAA+TGG | + | chr7_2:80542837-80542856 | Msa1080830:three_prime_UTR | 25.0% |
| ! | ATTATGATAAAGGTTCCAAT+GGG | + | chr7_2:80542838-80542857 | Msa1080830:three_prime_UTR | 25.0% |
| !! | TCTAATAGTTTTTGCTTACA+AGG | + | chr7_2:80542865-80542884 | Msa1080830:three_prime_UTR | 25.0% |
| ! | GTGTTGGTATTAAATAGTGA+GGG | + | chr7_2:80539308-80539327 | Msa1080830:five_prime_UTR | 30.0% |
| ATCAGTTAGTTACAGTTACA+GGG | - | chr7_2:80539508-80539527 | None:intergenic | 30.0% | |
| AATCAGTTAGTTACAGTTAC+AGG | - | chr7_2:80539509-80539528 | None:intergenic | 30.0% | |
| ATTGCAGATGGAATGTTTAA+GGG | + | chr7_2:80539672-80539691 | Msa1080830:intron | 30.0% | |
| ATGTTTAAGGGAATCTACAA+TGG | + | chr7_2:80539684-80539703 | Msa1080830:CDS | 30.0% | |
| AAGTGTTTGTAAATGTGACT+TGG | + | chr7_2:80540116-80540135 | Msa1080830:intron | 30.0% | |
| !! | TTTTCAGGATCTTTTGTCAT+TGG | + | chr7_2:80540184-80540203 | Msa1080830:CDS | 30.0% |
| AATCAAGATTCAGAACTATG+TGG | - | chr7_2:80540315-80540334 | None:intergenic | 30.0% | |
| !! | TTTCTTTTTCATATGCAAGG+TGG | + | chr7_2:80540464-80540483 | Msa1080830:intron | 30.0% |
| ! | TATGTACCTCTTTTGAATCT+CGG | - | chr7_2:80540541-80540560 | None:intergenic | 30.0% |
| AAAGTAACATGTATAGCAAC+AGG | - | chr7_2:80540571-80540590 | None:intergenic | 30.0% | |
| AGAAATGAACTTGATCGTAA+GGG | + | chr7_2:80540872-80540891 | Msa1080830:intron | 30.0% | |
| TAAACAACATAGCTAAGGTT+TGG | - | chr7_2:80540913-80540932 | None:intergenic | 30.0% | |
| AAGAGTAAACAACATAGCTA+AGG | - | chr7_2:80540918-80540937 | None:intergenic | 30.0% | |
| !! | GTTGTTTACTCTTTCAAGTT+TGG | + | chr7_2:80540925-80540944 | Msa1080830:intron | 30.0% |
| ATTTATGAAGCGTGTATATC+AGG | - | chr7_2:80541036-80541055 | None:intergenic | 30.0% | |
| ! | AATTGATGGCATAATCACTT+TGG | + | chr7_2:80541086-80541105 | Msa1080830:intron | 30.0% |
| ! | ATTGATGGCATAATCACTTT+GGG | + | chr7_2:80541087-80541106 | Msa1080830:intron | 30.0% |
| ! | TATGGTAATGCTTGAAAAGA+TGG | - | chr7_2:80541239-80541258 | None:intergenic | 30.0% |
| GCAAGATAAAAGTTTACTTG+TGG | - | chr7_2:80541328-80541347 | None:intergenic | 30.0% | |
| CCAGAAATGTGTATCATTTA+TGG | - | chr7_2:80541507-80541526 | None:intergenic | 30.0% | |
| CCATAAATGATACACATTTC+TGG | + | chr7_2:80541504-80541523 | Msa1080830:intron | 30.0% | |
| TACTTCTCTTTCTTCTTAGA+AGG | - | chr7_2:80541687-80541706 | None:intergenic | 30.0% | |
| GATCAAGATTGTATTGTCAA+AGG | + | chr7_2:80541708-80541727 | Msa1080830:CDS | 30.0% | |
| AGTCAATCAGACATATTTCT+AGG | - | chr7_2:80541908-80541927 | None:intergenic | 30.0% | |
| ATTGATCCTATGTGTTTGTT+GGG | + | chr7_2:80542083-80542102 | Msa1080830:intron | 30.0% | |
| CAAATTTGAATCTGACTAGT+GGG | + | chr7_2:80542206-80542225 | Msa1080830:intron | 30.0% | |
| !! | TTATATATTCTGAAGCTCCA+AGG | + | chr7_2:80542466-80542485 | Msa1080830:intron | 30.0% |
| TGTAATCTCTCTCAAGAATT+GGG | - | chr7_2:80542647-80542666 | None:intergenic | 30.0% | |
| ! | ACATTTTCAGATTCACTTCA+AGG | - | chr7_2:80542676-80542695 | None:intergenic | 30.0% |
| !!! | ATGTTTTTACTGCTACTTTG+CGG | + | chr7_2:80542692-80542711 | Msa1080830:three_prime_UTR | 30.0% |
| !! | GGTGTTGGTATTAAATAGTG+AGG | + | chr7_2:80539307-80539326 | Msa1080830:five_prime_UTR | 35.0% |
| !! | AAGATGAAGTGCTGAACATT+CGG | - | chr7_2:80539348-80539367 | None:intergenic | 35.0% |
| ! | GATATTGCTGTTAACTTCAC+AGG | + | chr7_2:80539566-80539585 | Msa1080830:intron | 35.0% |
| CATTGCAGATGGAATGTTTA+AGG | + | chr7_2:80539671-80539690 | Msa1080830:intron | 35.0% | |
| !! | AACTGTTTTGAACAGAGCTT+GGG | + | chr7_2:80539734-80539753 | Msa1080830:CDS | 35.0% |
| !!! | GGAAGACTTTTTTGTACTGT+TGG | + | chr7_2:80540021-80540040 | Msa1080830:intron | 35.0% |
| !! | TATTTTTACCTGCAGTGGTT+TGG | + | chr7_2:80540089-80540108 | Msa1080830:intron | 35.0% |
| !!! | GTGACTTGGTGTTTTGATTT+AGG | + | chr7_2:80540130-80540149 | Msa1080830:intron | 35.0% |
| ATTTAGGAATTTGAGGAGAG+TGG | + | chr7_2:80540146-80540165 | Msa1080830:intron | 35.0% | |
| !!! | AGATCCAGAAAAGCATTTTC+AGG | + | chr7_2:80540169-80540188 | Msa1080830:CDS | 35.0% |
| ! | AGATCCTGAAAATGCTTTTC+TGG | - | chr7_2:80540176-80540195 | None:intergenic | 35.0% |
| !! | TCTTTTGTCATTGGCTAAAG+AGG | + | chr7_2:80540193-80540212 | Msa1080830:CDS | 35.0% |
| !! | CTTTTGTCATTGGCTAAAGA+GGG | + | chr7_2:80540194-80540213 | Msa1080830:CDS | 35.0% |
| !! | TGTTGTTGTTTGTGAATGCT+AGG | + | chr7_2:80540643-80540662 | Msa1080830:intron | 35.0% |
| TGGTTGAGAAACATAAAGAC+AGG | + | chr7_2:80540754-80540773 | Msa1080830:CDS | 35.0% | |
| GAGAAATGAACTTGATCGTA+AGG | + | chr7_2:80540871-80540890 | Msa1080830:intron | 35.0% | |
| !! | CTACTCGTTTTGATGGATAT+CGG | - | chr7_2:80540979-80540998 | None:intergenic | 35.0% |
| !! | AATCACTTTGGGATGTGAAA+TGG | + | chr7_2:80541098-80541117 | Msa1080830:intron | 35.0% |
| ! | TACTTTTATGACAGGTTCTC+TGG | + | chr7_2:80541133-80541152 | Msa1080830:intron | 35.0% |
| CATACTACCGGTAAATGAAT+GGG | - | chr7_2:80541167-80541186 | None:intergenic | 35.0% | |
| AATGCAATCATCCATACTAC+CGG | - | chr7_2:80541179-80541198 | None:intergenic | 35.0% | |
| ! | ATACTAGGGTGCCTTAAAAT+AGG | - | chr7_2:80541270-80541289 | None:intergenic | 35.0% |
| GACAAAGATAGACATGTGAA+TGG | + | chr7_2:80541439-80541458 | Msa1080830:intron | 35.0% | |
| TCAATCATCATTCTCTCAAC+AGG | - | chr7_2:80541597-80541616 | None:intergenic | 35.0% | |
| GTATTCTTGATTTCGCAGTA+GGG | - | chr7_2:80541630-80541649 | None:intergenic | 35.0% | |
| AGTATTCTTGATTTCGCAGT+AGG | - | chr7_2:80541631-80541650 | None:intergenic | 35.0% | |
| GAAATCAAGAATACTCATGC+CGG | + | chr7_2:80541636-80541655 | Msa1080830:CDS | 35.0% | |
| !! | CATGGTTTTGCTTATCAATG+TGG | + | chr7_2:80541763-80541782 | Msa1080830:intron | 35.0% |
| ATCAATGTGGCAATACTTCA+AGG | + | chr7_2:80541776-80541795 | Msa1080830:intron | 35.0% | |
| CATTGATCCTATGTGTTTGT+TGG | + | chr7_2:80542082-80542101 | Msa1080830:intron | 35.0% | |
| ! | TCTTTTCCCAACAAACACAT+AGG | - | chr7_2:80542092-80542111 | None:intergenic | 35.0% |
| TAAATAGGAACACCTACTGA+CGG | + | chr7_2:80542142-80542161 | Msa1080830:intron | 35.0% | |
| AATTTGGTCCAGCCTAAATT+TGG | - | chr7_2:80542192-80542211 | None:intergenic | 35.0% | |
| CCACTAGTCAGATTCAAATT+TGG | - | chr7_2:80542208-80542227 | None:intergenic | 35.0% | |
| CCAAATTTGAATCTGACTAG+TGG | + | chr7_2:80542205-80542224 | Msa1080830:intron | 35.0% | |
| ACTCTTGGCATCTAATAACT+AGG | - | chr7_2:80542282-80542301 | None:intergenic | 35.0% | |
| !! | GGCATAACAATTGACTCTTT+TGG | + | chr7_2:80542400-80542419 | Msa1080830:intron | 35.0% |
| ! | CTGCAAAGCAATATTTTCCT+TGG | - | chr7_2:80542486-80542505 | None:intergenic | 35.0% |
| CAAGGAAAATATTGCTTTGC+AGG | + | chr7_2:80542484-80542503 | Msa1080830:intron | 35.0% | |
| GTAATCTCTCTCAAGAATTG+GGG | - | chr7_2:80542646-80542665 | None:intergenic | 35.0% | |
| GTGTAATCTCTCTCAAGAAT+TGG | - | chr7_2:80542648-80542667 | None:intergenic | 35.0% | |
| !!! | TGTTTTTACTGCTACTTTGC+GGG | + | chr7_2:80542693-80542712 | Msa1080830:three_prime_UTR | 35.0% |
| AAACTATTAGAACTGCCCAT+TGG | - | chr7_2:80542856-80542875 | None:intergenic | 35.0% | |
| ! | TTTTGCTTACAAGGATGCAT+TGG | + | chr7_2:80542874-80542893 | Msa1080830:three_prime_UTR | 35.0% |
| CACTTCATCTTCTTCTTCTG+TGG | + | chr7_2:80539357-80539376 | Msa1080830:five_prime_UTR | 40.0% | |
| CAAGCTCTGTTCAAAACAGT+TGG | - | chr7_2:80539735-80539754 | None:intergenic | 40.0% | |
| !! | CAACTGTTTTGAACAGAGCT+TGG | + | chr7_2:80539733-80539752 | Msa1080830:CDS | 40.0% |
| ATCCACCAGTTACGATGATT+CGG | - | chr7_2:80539773-80539792 | None:intergenic | 40.0% | |
| CAAACCATCAGTTTCAGCAA+TGG | - | chr7_2:80539823-80539842 | None:intergenic | 40.0% | |
| AAATCAACCTTGCAACGTGT+TGG | - | chr7_2:80540054-80540073 | None:intergenic | 40.0% | |
| !! | TTCGGTATTTTTACCTGCAG+TGG | + | chr7_2:80540084-80540103 | Msa1080830:intron | 40.0% |
| GCTAAAGAGGGAATTCAGAA+AGG | + | chr7_2:80540206-80540225 | Msa1080830:CDS | 40.0% | |
| AGAGGGAATTCAGAAAGGAA+AGG | + | chr7_2:80540211-80540230 | Msa1080830:CDS | 40.0% | |
| GATTCAGAACTATGTGGATC+TGG | - | chr7_2:80540309-80540328 | None:intergenic | 40.0% | |
| !! | AGTGTGGATTAGACTATGAC+CGG | + | chr7_2:80540499-80540518 | Msa1080830:CDS | 40.0% |
| AGCTGCAGATTTCTGTGAAA+TGG | + | chr7_2:80540734-80540753 | Msa1080830:CDS | 40.0% | |
| AAAATGATAGGCTAGGCAAG+AGG | - | chr7_2:80540842-80540861 | None:intergenic | 40.0% | |
| !! | TCTTTCAAGTTTGGGAGTTG+AGG | + | chr7_2:80540934-80540953 | Msa1080830:intron | 40.0% |
| !! | CTTTCAAGTTTGGGAGTTGA+GGG | + | chr7_2:80540935-80540954 | Msa1080830:intron | 40.0% |
| ! | CTCAATGCTACTCGTTTTGA+TGG | - | chr7_2:80540986-80541005 | None:intergenic | 40.0% |
| CATCAAAACGAGTAGCATTG+AGG | + | chr7_2:80540984-80541003 | Msa1080830:intron | 40.0% | |
| AAGCGTGTATATCAGGTATG+AGG | - | chr7_2:80541029-80541048 | None:intergenic | 40.0% | |
| ! | TTTTATGACAGGTTCTCTGG+TGG | + | chr7_2:80541136-80541155 | Msa1080830:intron | 40.0% |
| CCATACTACCGGTAAATGAA+TGG | - | chr7_2:80541168-80541187 | None:intergenic | 40.0% | |
| CCATTCATTTACCGGTAGTA+TGG | + | chr7_2:80541165-80541184 | Msa1080830:CDS | 40.0% | |
| ! | TAGGGTGCCTTAAAATAGGT+TGG | - | chr7_2:80541266-80541285 | None:intergenic | 40.0% |
| TGAGAACCTTGATGTTGTCA+AGG | + | chr7_2:80541566-80541585 | Msa1080830:CDS | 40.0% | |
| GAGAACCTTGATGTTGTCAA+GGG | + | chr7_2:80541567-80541586 | Msa1080830:CDS | 40.0% | |
| GAATACCCTTGACAACATCA+AGG | - | chr7_2:80541575-80541594 | None:intergenic | 40.0% | |
| AAGAATACTCATGCCGGAAT+AGG | + | chr7_2:80541642-80541661 | Msa1080830:CDS | 40.0% | |
| ! | GCCTTGTTCAGTTAGGTAAA+TGG | + | chr7_2:80541740-80541759 | Msa1080830:intron | 40.0% |
| GCCATTTACCTAACTGAACA+AGG | - | chr7_2:80541744-80541763 | None:intergenic | 40.0% | |
| GTTCAGTTAGGTAAATGGCA+TGG | + | chr7_2:80541745-80541764 | Msa1080830:intron | 40.0% | |
| CTGATTGACTGTAATGTTCC+AGG | + | chr7_2:80541918-80541937 | Msa1080830:intron | 40.0% | |
| !! | TGTAAAGGCATCAATGACGT+GGG | + | chr7_2:80541965-80541984 | Msa1080830:CDS | 40.0% |
| ! | TATGTTACCTGCAAGTGTTG+TGG | - | chr7_2:80542012-80542031 | None:intergenic | 40.0% |
| ! | GTGATCACTTGCATTGGTAA+CGG | - | chr7_2:80542053-80542072 | None:intergenic | 40.0% |
| CTACAAGTGATCACTTGCAT+TGG | - | chr7_2:80542059-80542078 | None:intergenic | 40.0% | |
| AAATAGGAACACCTACTGAC+GGG | + | chr7_2:80542143-80542162 | Msa1080830:intron | 40.0% | |
| AATTTGGCACAGGTCAAGAT+GGG | - | chr7_2:80542176-80542195 | None:intergenic | 40.0% | |
| AAATTTGGCACAGGTCAAGA+TGG | - | chr7_2:80542177-80542196 | None:intergenic | 40.0% | |
| TCTTGACCTGTGCCAAATTT+AGG | + | chr7_2:80542177-80542196 | Msa1080830:intron | 40.0% | |
| ! | TTTGAATCTGACTAGTGGGT+TGG | + | chr7_2:80542210-80542229 | Msa1080830:intron | 40.0% |
| TAGATGCCAAGAGTCTTGAT+TGG | + | chr7_2:80542288-80542307 | Msa1080830:intron | 40.0% | |
| CTACAGGAGAAAAGGATCGA+TGG | - | chr7_2:80539401-80539420 | None:intergenic | 45.0% | |
| ! | GATCCTTTTCTCCTGTAGTG+AGG | + | chr7_2:80539403-80539422 | Msa1080830:five_prime_UTR | 45.0% |
| TCACCTCACTACAGGAGAAA+AGG | - | chr7_2:80539409-80539428 | None:intergenic | 45.0% | |
| AAGCAGACATGGCAGCTATT+CGG | + | chr7_2:80539436-80539455 | Msa1080830:exon | 45.0% | |
| ATGGCAGCTATTCGGATGAT+AGG | + | chr7_2:80539444-80539463 | Msa1080830:CDS | 45.0% | |
| GTTCACCGAATCATCGTAAC+TGG | + | chr7_2:80539765-80539784 | Msa1080830:CDS | 45.0% | |
| TGGATCCCTTCAGGAATCAA+GGG | + | chr7_2:80539788-80539807 | Msa1080830:CDS | 45.0% | |
| AGCTTCCCTTGATTCCTGAA+GGG | - | chr7_2:80539796-80539815 | None:intergenic | 45.0% | |
| CTTGCCATTGCTGAAACTGA+TGG | + | chr7_2:80539816-80539835 | Msa1080830:CDS | 45.0% | |
| ! | TTTACCTGCAGTGGTTTGGA+TGG | + | chr7_2:80540093-80540112 | Msa1080830:intron | 45.0% |
| GTAACTAGATGTGCTTGAGC+AGG | + | chr7_2:80540283-80540302 | Msa1080830:intron | 45.0% | |
| ATATGCAAGGTGGTTGCAGT+TGG | + | chr7_2:80540474-80540493 | Msa1080830:intron | 45.0% | |
| ! | TACCTCTTTTGAATCTCGGC+GGG | - | chr7_2:80540537-80540556 | None:intergenic | 45.0% |
| ! | GTACCTCTTTTGAATCTCGG+CGG | - | chr7_2:80540538-80540557 | None:intergenic | 45.0% |
| GCTCGCATGTGCAAAAACAT+AGG | - | chr7_2:80540711-80540730 | None:intergenic | 45.0% | |
| ! | GGTGTCACCCATTCATTTAC+CGG | + | chr7_2:80541157-80541176 | Msa1080830:CDS | 45.0% |
| !! | CACATTTCTGGTACACTGAC+AGG | + | chr7_2:80541516-80541535 | Msa1080830:intron | 45.0% |
| GGTACACTGACAGGCATAAA+TGG | + | chr7_2:80541525-80541544 | Msa1080830:intron | 45.0% | |
| !! | GCAATGAGCCTTGTTCAGTT+AGG | + | chr7_2:80541733-80541752 | Msa1080830:CDS | 45.0% |
| ATGTTCCAGGCAAGTTCTTG+AGG | + | chr7_2:80541931-80541950 | Msa1080830:intron | 45.0% | |
| !! | CTGTAAAGGCATCAATGACG+TGG | + | chr7_2:80541964-80541983 | Msa1080830:CDS | 45.0% |
| TGTGGTACAATGTTCTACCG+AGG | - | chr7_2:80541994-80542013 | None:intergenic | 45.0% | |
| CATTGTACCACAACACTTGC+AGG | + | chr7_2:80542002-80542021 | Msa1080830:CDS | 45.0% | |
| ! | CAGGTAACATAGCTTGTCTC+TGG | + | chr7_2:80542021-80542040 | Msa1080830:intron | 45.0% |
| ATGCCAAGAGTCTTGATTGG+TGG | + | chr7_2:80542291-80542310 | Msa1080830:intron | 45.0% | |
| AGTCCACCAATCAAGACTCT+TGG | - | chr7_2:80542297-80542316 | None:intergenic | 45.0% | |
| !! | TTGATTGGTGGACTGCATCT+TGG | + | chr7_2:80542303-80542322 | Msa1080830:intron | 45.0% |
| ! | GATGTTTTTCCCGCATGACT+TGG | + | chr7_2:80542506-80542525 | Msa1080830:CDS | 45.0% |
| TCTCTCTCAAGAATTGGGGA+TGG | - | chr7_2:80542642-80542661 | None:intergenic | 45.0% | |
| TCGTTGCTTCACCTCACTAC+AGG | - | chr7_2:80539417-80539436 | None:intergenic | 50.0% | |
| GTGAAGCAACGAAGCAGACA+TGG | + | chr7_2:80539425-80539444 | Msa1080830:exon | 50.0% | |
| CACCGAATCATCGTAACTGG+TGG | + | chr7_2:80539768-80539787 | Msa1080830:CDS | 50.0% | |
| GTGGATCCCTTCAGGAATCA+AGG | + | chr7_2:80539787-80539806 | Msa1080830:CDS | 50.0% | |
| GAGCTTCCCTTGATTCCTGA+AGG | - | chr7_2:80539797-80539816 | None:intergenic | 50.0% | |
| TGTGCATCCAACACGTTGCA+AGG | + | chr7_2:80540044-80540063 | Msa1080830:CDS | 50.0% | |
| ACTTCCATCCAAACCACTGC+AGG | - | chr7_2:80540100-80540119 | None:intergenic | 50.0% | |
| ! | ACCTCTTTTGAATCTCGGCG+GGG | - | chr7_2:80540536-80540555 | None:intergenic | 50.0% |
| TTCCAGGCAAGTTCTTGAGG+TGG | + | chr7_2:80541934-80541953 | Msa1080830:intron | 50.0% | |
| AACCACCTCAAGAACTTGCC+TGG | - | chr7_2:80541939-80541958 | None:intergenic | 50.0% | |
| CAAGTTCTTGAGGTGGTTGC+TGG | + | chr7_2:80541941-80541960 | Msa1080830:CDS | 50.0% | |
| ATCAATGACGTGGGTAGCCT+CGG | + | chr7_2:80541974-80541993 | Msa1080830:CDS | 50.0% | |
| GACCTGTGCCAAATTTAGGC+TGG | + | chr7_2:80542181-80542200 | Msa1080830:intron | 50.0% | |
| GTCCAGCCTAAATTTGGCAC+AGG | - | chr7_2:80542186-80542205 | None:intergenic | 50.0% | |
| TTGAACAGAGCTTGGGCTGC+TGG | + | chr7_2:80539741-80539760 | Msa1080830:CDS | 55.0% | |
| ! | CGTAACTGGTGGATCCCTTC+AGG | + | chr7_2:80539779-80539798 | Msa1080830:CDS | 55.0% |
| GTGGTTGCAGTTGGAGAGTG+TGG | + | chr7_2:80540483-80540502 | Msa1080830:CDS | 55.0% | |
| ! | GAGGTGGTTGCTGGCTGTAA+AGG | + | chr7_2:80541950-80541969 | Msa1080830:CDS | 55.0% |
| CCGCAGAATCCAAGTCATGC+GGG | - | chr7_2:80542518-80542537 | None:intergenic | 55.0% | |
| ! | CCCGCATGACTTGGATTCTG+CGG | + | chr7_2:80542515-80542534 | Msa1080830:CDS | 55.0% |
| GCCGCAGAATCCAAGTCATG+CGG | - | chr7_2:80542519-80542538 | None:intergenic | 55.0% | |
| ! | GCGGCTGATGCTCTTTTAGC+TGG | + | chr7_2:80542534-80542553 | Msa1080830:CDS | 55.0% |
| CGGCGGGGCAAAAATGAAGC+CGG | - | chr7_2:80540521-80540540 | None:intergenic | 60.0% | |
| GCCCCGCCGAGATTCAAAAG+AGG | + | chr7_2:80540532-80540551 | Msa1080830:CDS | 60.0% | |
| TGGGATTCACGCCCGTCAGT+AGG | - | chr7_2:80542157-80542176 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 80539296 | 80542903 | 80539296 | ID=Msa1080830;Name=Msa1080830 |
| chr7_2 | mRNA | 80539296 | 80542903 | 80539296 | ID=Msa1080830-mRNA-1;Parent=Msa1080830;Name=Msa1080830-mRNA-1;_AED=0.13;_eAED=0.13;_QI=148|1|1|1|1|1|11|331|319 |
| chr7_2 | exon | 80539296 | 80539465 | 80539296 | ID=Msa1080830-mRNA-1:exon:20402;Parent=Msa1080830-mRNA-1 |
| chr7_2 | exon | 80539567 | 80539587 | 80539567 | ID=Msa1080830-mRNA-1:exon:20403;Parent=Msa1080830-mRNA-1 |
| chr7_2 | exon | 80539679 | 80539837 | 80539679 | ID=Msa1080830-mRNA-1:exon:20404;Parent=Msa1080830-mRNA-1 |
| chr7_2 | exon | 80540022 | 80540065 | 80540022 | ID=Msa1080830-mRNA-1:exon:20405;Parent=Msa1080830-mRNA-1 |
| chr7_2 | exon | 80540152 | 80540232 | 80540152 | ID=Msa1080830-mRNA-1:exon:20406;Parent=Msa1080830-mRNA-1 |
| chr7_2 | exon | 80540483 | 80540553 | 80540483 | ID=Msa1080830-mRNA-1:exon:20407;Parent=Msa1080830-mRNA-1 |
| chr7_2 | exon | 80540665 | 80540775 | 80540665 | ID=Msa1080830-mRNA-1:exon:20408;Parent=Msa1080830-mRNA-1 |
| chr7_2 | exon | 80541147 | 80541229 | 80541147 | ID=Msa1080830-mRNA-1:exon:20409;Parent=Msa1080830-mRNA-1 |
| chr7_2 | exon | 80541538 | 80541754 | 80541538 | ID=Msa1080830-mRNA-1:exon:20410;Parent=Msa1080830-mRNA-1 |
| chr7_2 | exon | 80541940 | 80542023 | 80541940 | ID=Msa1080830-mRNA-1:exon:20411;Parent=Msa1080830-mRNA-1 |
| chr7_2 | exon | 80542506 | 80542903 | 80542506 | ID=Msa1080830-mRNA-1:exon:20412;Parent=Msa1080830-mRNA-1 |
| chr7_2 | five_prime_UTR | 80539296 | 80539443 | 80539296 | ID=Msa1080830-mRNA-1:five_prime_utr;Parent=Msa1080830-mRNA-1 |
| chr7_2 | CDS | 80539444 | 80539465 | 80539444 | ID=Msa1080830-mRNA-1:cds;Parent=Msa1080830-mRNA-1 |
| chr7_2 | CDS | 80539567 | 80539587 | 80539567 | ID=Msa1080830-mRNA-1:cds;Parent=Msa1080830-mRNA-1 |
| chr7_2 | CDS | 80539679 | 80539837 | 80539679 | ID=Msa1080830-mRNA-1:cds;Parent=Msa1080830-mRNA-1 |
| chr7_2 | CDS | 80540022 | 80540065 | 80540022 | ID=Msa1080830-mRNA-1:cds;Parent=Msa1080830-mRNA-1 |
| chr7_2 | CDS | 80540152 | 80540232 | 80540152 | ID=Msa1080830-mRNA-1:cds;Parent=Msa1080830-mRNA-1 |
| chr7_2 | CDS | 80540483 | 80540553 | 80540483 | ID=Msa1080830-mRNA-1:cds;Parent=Msa1080830-mRNA-1 |
| chr7_2 | CDS | 80540665 | 80540775 | 80540665 | ID=Msa1080830-mRNA-1:cds;Parent=Msa1080830-mRNA-1 |
| chr7_2 | CDS | 80541147 | 80541229 | 80541147 | ID=Msa1080830-mRNA-1:cds;Parent=Msa1080830-mRNA-1 |
| chr7_2 | CDS | 80541538 | 80541754 | 80541538 | ID=Msa1080830-mRNA-1:cds;Parent=Msa1080830-mRNA-1 |
| chr7_2 | CDS | 80541940 | 80542023 | 80541940 | ID=Msa1080830-mRNA-1:cds;Parent=Msa1080830-mRNA-1 |
| chr7_2 | CDS | 80542506 | 80542572 | 80542506 | ID=Msa1080830-mRNA-1:cds;Parent=Msa1080830-mRNA-1 |
| chr7_2 | three_prime_UTR | 80542573 | 80542903 | 80542573 | ID=Msa1080830-mRNA-1:three_prime_utr;Parent=Msa1080830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
