AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0000950

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0000950 MtrunA17_Chr5g0405791 100.000 197 0 0 1 197 1 197 2.40e-147 407
Msa0000950 MtrunA17_Chr8g0371501 97.462 197 5 0 1 197 1 197 1.10e-143 397
Msa0000950 MtrunA17_Chr4g0037021 89.340 197 21 0 1 197 1 197 1.93e-133 372
Msa0000950 MtrunA17_Chr3g0117931 77.835 194 42 1 2 194 4 197 1.41e-116 330
Msa0000950 MtrunA17_Chr2g0325101 84.270 178 28 0 1 178 1 178 8.01e-116 327
Msa0000950 MtrunA17_Chr6g0486041 74.874 199 47 1 1 196 1 199 1.40e-111 317
Msa0000950 MtrunA17_Chr4g0046211 88.112 143 17 0 1 143 1 143 5.57e-94 270
Msa0000950 MtrunA17_Chr7g0265001 30.851 188 116 5 8 192 18 194 1.09e-25 98.6
Msa0000950 MtrunA17_Chr1g0182321 31.383 188 116 6 6 191 15 191 7.56e-25 96.7
Msa0000950 MtrunA17_Chr1g0182301 31.383 188 116 6 6 191 15 191 1.31e-24 95.9
Msa0000950 MtrunA17_Chr1g0212521 32.386 176 106 6 6 179 15 179 1.60e-24 95.9
Msa0000950 MtrunA17_Chr4g0030911 32.386 176 106 6 6 179 15 179 2.78e-24 95.1
Msa0000950 MtrunA17_Chr7g0263071 30.851 188 117 6 6 191 15 191 3.86e-24 94.7
Msa0000950 MtrunA17_Chr8g0384311 30.726 179 109 5 6 181 13 179 2.64e-23 92.4
Msa0000950 MtrunA17_Chr3g0130271 29.630 189 119 5 7 192 13 190 3.95e-23 92.0
Msa0000950 MtrunA17_Chr1g0199331 31.461 178 105 7 7 180 32 196 8.76e-23 90.9
Msa0000950 MtrunA17_Chr1g0180291 30.899 178 108 5 7 181 15 180 1.44e-22 90.5
Msa0000950 MtrunA17_Chr8g0349711 30.814 172 105 5 1 170 1 160 2.85e-22 89.7
Msa0000950 MtrunA17_Chr8g0335471 33.516 182 102 8 6 180 8 177 4.21e-22 89.0
Msa0000950 MtrunA17_Chr1g0159481 30.726 179 109 5 6 181 17 183 4.99e-22 89.4
Msa0000950 MtrunA17_Chr7g0275991 33.939 165 95 5 8 170 22 174 5.37e-22 89.4
Msa0000950 MtrunA17_Chr4g0055651 29.947 187 112 6 6 185 8 182 6.03e-22 88.6
Msa0000950 MtrunA17_Chr8g0390561 31.111 180 109 6 8 184 11 178 1.42e-21 87.4
Msa0000950 MtrunA17_Chr7g0250531 31.016 187 110 7 6 185 8 182 1.53e-21 87.4
Msa0000950 MtrunA17_Chr4g0055081 32.727 165 97 5 8 170 11 163 2.05e-21 87.4
Msa0000950 MtrunA17_Chr2g0276931 30.857 175 104 6 1 170 1 163 2.79e-21 87.0
Msa0000950 MtrunA17_Chr3g0109721 32.961 179 105 5 8 183 12 178 8.98e-21 85.5
Msa0000950 MtrunA17_Chr2g0319951 29.282 181 114 5 6 184 13 181 1.01e-20 85.9
Msa0000950 MtrunA17_Chr5g0400131 32.727 165 97 5 8 170 11 163 1.97e-20 84.7
Msa0000950 MtrunA17_Chr2g0327911 29.891 184 114 6 6 185 15 187 2.55e-20 84.7
Msa0000950 MtrunA17_Chr8g0346421 38.655 119 70 3 8 124 28 145 2.68e-20 85.1
Msa0000950 MtrunA17_Chr6g0458081 27.624 181 117 5 1 179 1 169 2.72e-20 84.3
Msa0000950 MtrunA17_Chr2g0290891 27.907 172 110 5 1 170 1 160 3.85e-20 84.0
Msa0000950 MtrunA17_Chr8g0349681 30.233 172 106 5 1 170 8 167 8.83e-20 86.3
Msa0000950 MtrunA17_Chr8g0349681 29.651 172 107 5 1 170 379 538 5.21e-19 84.3
Msa0000950 MtrunA17_Chr8g0349681 28.488 172 109 5 1 170 170 329 1.22e-18 83.2
Msa0000950 MtrunA17_Chr5g0433561 31.515 165 99 4 8 170 12 164 2.27e-19 81.6
Msa0000950 MtrunA17_Chr4g0040781 35.606 132 82 3 6 135 13 143 3.82e-19 81.6
Msa0000950 MtrunA17_Chr1g0201121 30.729 192 116 7 1 184 1 183 4.18e-19 81.3
Msa0000950 MtrunA17_Chr3g0123971 30.909 165 100 4 8 170 11 163 4.46e-19 81.3
Msa0000950 MtrunA17_Chr4g0046261 29.834 181 113 5 6 184 13 181 4.61e-19 81.3
Msa0000950 MtrunA17_Chr2g0276941 30.994 171 104 5 6 174 15 173 4.87e-19 81.3
Msa0000950 MtrunA17_Chr3g0112681 29.834 181 113 5 6 184 12 180 5.46e-19 81.3
Msa0000950 MtrunA17_Chr2g0315551 35.833 120 74 3 6 123 13 131 5.74e-19 81.3
Msa0000950 MtrunA17_Chr1g0174281 32.530 166 98 5 7 170 16 169 6.21e-19 81.3
Msa0000950 MtrunA17_Chr8g0382221 31.515 165 99 5 8 170 11 163 6.56e-19 80.9
Msa0000950 MtrunA17_Chr2g0283131 35.833 120 74 3 6 123 13 131 1.05e-18 80.5
Msa0000950 MtrunA17_Chr1g0197331 28.804 184 116 5 7 186 16 188 1.31e-18 80.1
Msa0000950 MtrunA17_Chr7g0234201 28.947 190 121 5 6 193 13 190 1.69e-18 79.7
Msa0000950 MtrunA17_Chr7g0231131 31.928 166 99 6 7 170 16 169 2.65e-18 79.3
Msa0000950 MtrunA17_Chr8g0381841 31.515 165 99 5 8 170 19 171 6.75e-18 78.6
Msa0000950 MtrunA17_Chr8g0392931 35.294 119 74 3 6 122 14 131 1.19e-17 77.8
Msa0000950 MtrunA17_Chr2g0331691 29.032 186 117 6 6 185 10 186 1.38e-17 77.4
Msa0000950 MtrunA17_Chr7g0214241 28.947 190 121 5 6 193 15 192 1.53e-17 77.4
Msa0000950 MtrunA17_Chr4g0034871 27.957 186 119 5 6 185 8 184 2.64e-17 76.6
Msa0000950 MtrunA17_Chr3g0123821 31.325 166 98 6 8 170 18 170 3.04e-17 76.6
Msa0000950 MtrunA17_Chr6g0466301 30.994 171 103 6 6 170 8 169 4.79e-17 75.9
Msa0000950 MtrunA17_Chr6g0465491 30.994 171 103 6 6 170 8 169 4.79e-17 75.9
Msa0000950 MtrunA17_Chr4g0032201 29.341 167 104 5 6 170 12 166 5.92e-17 75.9
Msa0000950 MtrunA17_Chr1g0189361 30.114 176 105 6 6 177 14 175 6.15e-17 75.9
Msa0000950 MtrunA17_Chr8g0351861 31.138 167 101 6 6 170 16 170 6.27e-17 75.9
Msa0000950 MtrunA17_Chr2g0325091 36.667 120 73 3 6 123 11 129 1.74e-16 74.3
Msa0000950 MtrunA17_Chr4g0004661 28.497 193 121 7 1 185 57 240 2.52e-16 74.7
Msa0000950 MtrunA17_Chr8g0383261 28.235 170 109 3 6 170 12 173 2.58e-16 73.9
Msa0000950 MtrunA17_Chr6g0482721 33.065 124 80 3 6 127 12 134 9.61e-16 72.4
Msa0000950 MtrunA17_Chr7g0259771 28.877 187 99 4 7 180 9 174 4.67e-15 72.8
Msa0000950 MtrunA17_Chr3g0138121 28.485 165 103 4 7 170 14 164 6.94e-14 67.4
Msa0000950 MtrunA17_Chr3g0138101 28.485 165 103 4 7 170 14 164 7.16e-14 67.4
Msa0000950 MtrunA17_Chr3g0138111 28.485 165 103 4 7 170 14 164 8.00e-14 67.4
Msa0000950 MtrunA17_Chr1g0185591 27.604 192 95 6 7 180 13 178 8.38e-14 69.3
Msa0000950 MtrunA17_Chr1g0191811 28.571 175 115 4 7 180 17 182 8.40e-13 66.2
Msa0000950 MtrunA17_Chr4g0046221 70.270 37 11 0 142 178 10 46 2.23e-12 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0000950 AT2G17800.2 95.431 197 9 0 1 197 1 197 8.11e-128 358
Msa0000950 AT2G17800.1 95.431 197 9 0 1 197 1 197 8.11e-128 358
Msa0000950 AT3G51300.1 95.431 197 9 0 1 197 1 197 1.40e-127 357
Msa0000950 AT4G35950.1 95.939 197 8 0 1 197 1 197 1.42e-127 357
Msa0000950 AT4G35020.1 87.374 198 24 1 1 197 1 198 2.34e-124 349
Msa0000950 AT4G35020.2 87.374 198 24 1 1 197 1 198 2.34e-124 349
Msa0000950 AT4G35020.3 87.374 198 24 1 1 197 1 198 2.34e-124 349
Msa0000950 AT1G75840.1 91.573 178 15 0 1 178 1 178 5.36e-122 343
Msa0000950 AT1G20090.1 90.341 176 17 0 3 178 2 177 3.09e-119 336
Msa0000950 AT5G45970.1 86.034 179 25 0 1 179 1 179 1.71e-117 332
Msa0000950 AT4G28950.1 75.500 200 43 2 1 196 1 198 2.63e-111 317
Msa0000950 AT5G62880.1 80.447 179 35 0 2 180 4 182 8.69e-111 315
Msa0000950 AT3G48040.1 80.447 179 35 0 2 180 4 182 8.96e-110 313
Msa0000950 AT2G44690.1 75.000 192 48 0 6 197 18 209 2.40e-106 304
Msa0000950 AT5G62880.2 79.070 172 32 1 2 173 4 171 5.27e-103 295
Msa0000950 AT3G48040.2 80.368 163 32 0 2 164 4 166 4.32e-100 287
Msa0000950 AT3G51290.2 95.122 164 8 0 34 197 635 798 1.77e-96 297
Msa0000950 AT4G35020.4 92.500 120 9 0 1 120 1 120 9.82e-82 239
Msa0000950 AT4G35020.5 92.500 120 9 0 1 120 1 120 9.82e-82 239
Msa0000950 AT3G46060.2 32.386 176 106 6 6 179 15 179 7.98e-24 94.4
Msa0000950 AT3G46060.3 32.386 176 106 6 6 179 15 179 7.98e-24 94.4
Msa0000950 AT3G46060.1 32.386 176 106 6 6 179 15 179 7.98e-24 94.4
Msa0000950 AT3G54840.2 33.333 168 97 6 7 171 34 189 8.90e-24 93.6
Msa0000950 AT3G54840.1 32.143 168 99 5 7 171 34 189 9.53e-24 93.6
Msa0000950 AT3G54840.3 31.928 166 98 5 9 171 2 155 3.62e-23 91.3
Msa0000950 AT1G02130.1 32.544 169 100 6 6 172 8 164 8.47e-23 91.3
Msa0000950 AT3G53610.2 31.737 167 101 6 6 170 15 170 1.04e-22 91.3
Msa0000950 AT3G53610.3 31.737 167 101 6 6 170 15 170 1.04e-22 91.3
Msa0000950 AT3G53610.1 31.737 167 101 6 6 170 15 170 1.04e-22 91.3
Msa0000950 AT5G45130.1 33.333 165 96 4 8 170 12 164 1.10e-22 90.9
Msa0000950 AT5G59840.1 31.737 167 101 5 6 170 15 170 1.43e-22 90.9
Msa0000950 AT4G19640.1 33.333 165 96 4 8 170 12 164 2.49e-22 90.1
Msa0000950 AT1G43890.3 30.168 179 110 5 6 181 13 179 2.50e-22 90.1
Msa0000950 AT1G43890.1 30.168 179 110 5 6 181 13 179 2.50e-22 90.1
Msa0000950 AT1G43890.2 30.168 179 110 5 6 181 13 179 2.50e-22 90.1
Msa0000950 AT1G16920.1 32.418 182 109 6 6 185 13 182 2.99e-22 90.1
Msa0000950 AT5G45130.2 33.129 163 95 4 10 170 22 172 5.58e-22 89.4
Msa0000950 AT1G73640.1 32.984 191 110 6 6 190 13 191 1.97e-21 88.6
Msa0000950 AT2G44610.1 33.333 165 96 5 8 170 11 163 2.27e-21 87.8
Msa0000950 AT5G03530.2 28.191 188 120 5 8 192 15 190 2.39e-21 87.8
Msa0000950 AT5G03530.1 28.191 188 120 5 8 192 15 190 2.39e-21 87.8
Msa0000950 AT4G18430.1 32.597 181 108 5 6 184 13 181 4.12e-21 87.0
Msa0000950 AT4G35860.1 27.624 181 117 5 1 179 1 169 1.11e-20 85.9
Msa0000950 AT4G17530.1 31.016 187 110 7 6 185 8 182 1.79e-20 85.1
Msa0000950 AT4G39890.1 34.731 167 92 6 8 170 11 164 1.82e-20 85.5
Msa0000950 AT5G47200.1 31.319 182 106 7 6 180 8 177 3.03e-20 84.7
Msa0000950 AT3G11730.1 29.940 167 103 5 6 170 8 162 3.37e-20 84.3
Msa0000950 AT2G22290.1 33.333 165 96 5 8 170 11 163 3.58e-20 84.3
Msa0000950 AT1G06400.1 32.335 167 99 5 6 170 13 167 6.72e-20 84.0
Msa0000950 AT4G19640.2 36.885 122 74 3 8 127 12 132 8.89e-20 82.0
Msa0000950 AT4G18800.1 36.667 120 73 3 6 123 13 131 9.53e-20 83.6
Msa0000950 AT1G09630.1 31.492 181 110 5 6 184 12 180 9.58e-20 83.6
Msa0000950 AT3G15060.1 31.285 179 109 5 8 184 15 181 1.65e-19 82.8
Msa0000950 AT4G17170.1 27.326 172 111 5 1 170 1 160 2.17e-19 82.4
Msa0000950 AT4G19640.3 34.074 135 86 3 8 140 12 145 2.68e-19 82.0
Msa0000950 AT2G31680.1 29.670 182 114 4 6 185 12 181 2.75e-19 82.4
Msa0000950 AT3G09900.1 32.934 167 99 6 6 170 15 170 3.29e-19 82.0
Msa0000950 AT3G07410.1 30.526 190 118 5 6 193 12 189 3.29e-19 82.0
Msa0000950 AT4G17160.1 26.744 172 112 5 1 170 1 160 3.69e-19 81.6
Msa0000950 AT1G18200.1 30.387 181 112 6 6 184 13 181 5.73e-19 81.6
Msa0000950 AT5G60860.1 30.387 181 112 5 6 184 13 181 5.85e-19 81.6
Msa0000950 AT2G43130.1 29.121 182 115 5 6 185 12 181 5.89e-19 81.3
Msa0000950 AT3G12160.1 32.530 166 98 5 7 170 16 169 5.91e-19 81.6
Msa0000950 AT5G45750.1 35.833 120 74 3 6 123 13 131 6.31e-19 81.3
Msa0000950 AT3G18820.1 29.570 186 116 6 6 185 8 184 7.28e-19 80.9
Msa0000950 AT5G03520.1 33.533 167 98 6 6 170 15 170 8.63e-19 80.9
Msa0000950 AT1G01200.1 34.132 167 95 6 7 170 29 183 1.66e-18 80.9
Msa0000950 AT1G28550.1 37.500 120 72 3 6 123 13 131 1.71e-18 80.1
Msa0000950 AT5G10260.1 32.121 165 98 5 8 170 11 163 2.11e-18 79.7
Msa0000950 AT1G05810.2 30.994 171 104 5 6 174 58 216 2.97e-18 80.5
Msa0000950 AT1G05810.1 29.670 182 114 5 6 185 12 181 3.26e-18 79.7
Msa0000950 AT2G33870.1 37.815 119 71 3 6 122 13 130 5.00e-18 79.0
Msa0000950 AT5G64990.1 33.333 165 96 5 8 170 9 161 7.57e-18 78.2
Msa0000950 AT5G47520.1 28.652 178 113 5 2 177 10 175 1.85e-17 77.4
Msa0000950 AT1G22740.1 29.167 192 119 6 1 184 1 183 2.47e-17 77.0
Msa0000950 AT1G52280.1 30.726 179 107 7 1 171 1 170 5.25e-17 76.3
Msa0000950 AT2G21880.1 27.174 184 121 4 6 184 9 184 9.54e-17 75.5
Msa0000950 AT4G39990.1 32.787 122 79 3 7 126 18 138 1.10e-16 75.5
Msa0000950 AT1G07410.1 34.454 119 75 3 6 122 12 129 1.27e-16 75.1
Msa0000950 AT5G59150.1 29.240 171 107 6 6 174 12 170 1.57e-16 75.1
Msa0000950 AT3G16100.1 29.947 187 114 7 1 179 1 178 1.87e-16 74.7
Msa0000950 AT5G47960.1 33.051 118 76 3 7 122 16 132 2.16e-16 74.7
Msa0000950 AT5G65270.1 28.729 181 113 6 7 184 18 185 2.31e-16 74.7
Msa0000950 AT4G09720.1 30.409 171 104 6 6 170 8 169 5.43e-16 73.2
Msa0000950 AT3G09910.3 28.652 178 112 5 7 181 14 179 1.09e-15 72.4
Msa0000950 AT3G09910.1 28.652 178 112 5 7 181 14 179 1.09e-15 72.4
Msa0000950 AT3G09910.2 28.652 178 112 5 7 181 14 179 1.09e-15 72.4
Msa0000950 AT5G27540.1 25.862 174 121 2 7 180 18 183 1.12e-15 75.1
Msa0000950 AT5G27540.2 25.862 174 121 2 7 180 18 183 1.12e-15 75.1
Msa0000950 AT3G46830.1 32.773 119 77 3 6 122 12 129 1.39e-15 72.4
Msa0000950 AT3G46830.2 32.773 119 77 3 6 122 12 129 1.39e-15 72.4
Msa0000950 AT1G49300.2 29.825 171 105 6 6 170 8 169 1.51e-15 72.0
Msa0000950 AT1G49300.1 29.825 171 105 6 6 170 8 169 1.51e-15 72.0
Msa0000950 AT5G64990.2 31.977 172 96 6 8 170 9 168 3.92e-15 71.2
Msa0000950 AT5G55080.1 30.769 117 79 2 7 122 14 129 6.81e-15 70.9
Msa0000950 AT3G09910.5 29.282 181 110 6 7 181 14 182 9.10e-15 69.7
Msa0000950 AT3G09910.4 29.282 181 110 6 7 181 14 182 9.10e-15 69.7
Msa0000950 AT4G09720.4 28.409 176 106 5 6 170 8 174 1.45e-14 69.7
Msa0000950 AT3G63150.1 30.286 175 112 5 7 180 15 180 2.34e-14 71.2
Msa0000950 AT5G20020.1 28.485 165 103 4 7 170 14 164 8.48e-14 67.8
Msa0000950 AT5G20010.1 28.485 165 103 4 7 170 14 164 9.29e-14 67.8
Msa0000950 AT5G55190.1 31.092 119 80 2 7 124 14 131 9.68e-14 67.4
Msa0000950 AT4G09720.3 27.473 182 106 5 6 170 8 180 1.17e-13 67.4
Msa0000950 AT5G03520.2 30.137 146 90 5 47 191 47 181 1.91e-12 63.9
Msa0000950 AT4G35860.2 25.373 134 87 4 47 179 2 123 1.00e-11 61.2

Find 79 sgRNAs with CRISPR-Local

Find 252 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGAAGATCTGAGGCTATTT+TGG 0.133154 1_1:+2332338 Msa0000950:five_prime_UTR
CTTTGTTCCAACCAGAATTA+TGG 0.197915 1_1:-2333801 None:intergenic
AGAAAGAGAAAGAACCTATT+TGG 0.261379 1_1:-2332057 None:intergenic
AGTGCGAATGTGGTTGTTAA+TGG 0.319066 1_1:+2333347 Msa0000950:CDS
TAATGGAAGTATTGTGAATC+TGG 0.328007 1_1:+2333364 Msa0000950:CDS
TCTTCTGCTTTGGTGGTTGA+AGG 0.339738 1_1:-2334714 None:intergenic
AAACGACATTTCTTGTCATT+TGG 0.355939 1_1:+2335054 Msa0000950:three_prime_UTR
TTTGTTCCAACCAGAATTAT+GGG 0.374664 1_1:-2333800 None:intergenic
TGGTTGAAGGACAACTCTTA+TGG 0.386728 1_1:-2334701 None:intergenic
TTATGAAAATGTCTCCAAAA+AGG 0.394383 1_1:+2333582 Msa0000950:CDS
AAAGAAGGGGAGGGGAATAC+AGG 0.394999 1_1:-2334815 None:intergenic
CACACTCTCAGCTTCCAAAT+AGG 0.400756 1_1:+2332043 Msa0000950:five_prime_UTR
TTCTTTGTTATTGAAGAAGT+TGG 0.406930 1_1:+2334846 Msa0000950:three_prime_UTR
TTGTATCGAGATAGACCTTC+GGG 0.409474 1_1:+2334354 Msa0000950:intron
TTAAGCCACCTTATGCTTCA+AGG 0.411941 1_1:-2334911 None:intergenic
ATCACCTGAGCTGTGGTAAT+GGG 0.421707 1_1:-2334415 None:intergenic
GAAGAATAAGAAGAAAGTAC+TGG 0.425254 1_1:+2332295 Msa0000950:five_prime_UTR
AACCGTGGGGAAAGTATTGC+TGG 0.429322 1_1:-2332457 None:intergenic
CAAAGAAAATGATGAAAAGA+AGG 0.438811 1_1:-2334830 None:intergenic
TAAGAAGAAAGTACTGGAGG+AGG 0.446434 1_1:+2332301 Msa0000950:five_prime_UTR
AAAGAAGAATAAAGCACAAA+AGG 0.449553 1_1:+2334738 Msa0000950:CDS
AATCACCTGAGCTGTGGTAA+TGG 0.454383 1_1:-2334416 None:intergenic
TAATTGCCTTCTTCTCTCAC+AGG 0.456105 1_1:+2332088 Msa0000950:five_prime_UTR
ACCTGGTGTCCCCATAATTC+TGG 0.467734 1_1:+2333790 Msa0000950:CDS
CTAGATCTCCTTGAAGCATA+AGG 0.474002 1_1:+2334903 Msa0000950:three_prime_UTR
AAGAGGATATACGAAATAGT+TGG 0.475651 1_1:+2331978 Msa0000950:five_prime_UTR
AAAGAAAATGATGAAAAGAA+GGG 0.477205 1_1:-2334829 None:intergenic
GGTGCATAATGCTTCAACTC+TGG 0.481713 1_1:-2333770 None:intergenic
GGAGGAGGGGAACTGTCCTC+AGG 0.484285 1_1:+2332316 Msa0000950:five_prime_UTR
AAGAAGAAAGTACTGGAGGA+GGG 0.485036 1_1:+2332302 Msa0000950:five_prime_UTR
AGTGAATTACAATATTGAAC+AGG 0.490190 1_1:-2334761 None:intergenic
CCTAACCCTGTGAGAGAAGA+AGG 0.494457 1_1:-2332094 None:intergenic
ATTCTGGTTGGAACAAAGCT+TGG 0.495346 1_1:+2333806 Msa0000950:CDS
TTTGTATCGAGATAGACCTT+CGG 0.498207 1_1:+2334353 Msa0000950:intron
GTGGTAATGGGAACGGCACC+AGG 0.503169 1_1:-2334403 None:intergenic
TATTGTGAATCTGGGTTTGT+GGG 0.507703 1_1:+2333373 Msa0000950:CDS
AATGGAAGTATTGTGAATCT+GGG 0.518446 1_1:+2333365 Msa0000950:CDS
AATGATGAAAAGAAGGGGAG+GGG 0.524862 1_1:-2334823 None:intergenic
CTGGGTTTGTGGGATACTGC+TGG 0.538632 1_1:+2333383 Msa0000950:CDS
GTATTGTGAATCTGGGTTTG+TGG 0.538694 1_1:+2333372 Msa0000950:CDS
CGTTCCCATTACCACAGCTC+AGG 0.544810 1_1:+2334411 Msa0000950:CDS
TGAATGCAGTTCAAAATCAC+AGG 0.553565 1_1:+2334562 Msa0000950:CDS
AAATGTGTTACTGTTGGTGA+TGG 0.556572 1_1:+2332399 Msa0000950:CDS
TTTATTAAATGTGTTACTGT+TGG 0.563795 1_1:+2332393 Msa0000950:CDS
CACCAGCAATACTTTCCCCA+CGG 0.567542 1_1:+2332455 Msa0000950:CDS
GAACTGCATTCAATGTAAGC+TGG 0.572826 1_1:-2334551 None:intergenic
AAATGATGAAAAGAAGGGGA+GGG 0.575158 1_1:-2334824 None:intergenic
CAGTTCTGCATAGACCATCC+TGG 0.577967 1_1:+2334385 Msa0000950:CDS
AAGAAAATGATGAAAAGAAG+GGG 0.582810 1_1:-2334828 None:intergenic
GTTCAATATTGTAATTCACT+AGG 0.584735 1_1:+2334764 Msa0000950:exon
GAATAAGAAGAAAGTACTGG+AGG 0.584899 1_1:+2332298 Msa0000950:five_prime_UTR
AATTGCCTTCTTCTCTCACA+GGG 0.587915 1_1:+2332089 Msa0000950:five_prime_UTR
AAAATGATGAAAAGAAGGGG+AGG 0.591003 1_1:-2334825 None:intergenic
TATTTGTGGAACAGGGCAAG+AGG 0.600984 1_1:+2333480 Msa0000950:intron
ACCAGAATTATGGGGACACC+AGG 0.601533 1_1:-2333791 None:intergenic
ACTGTTGGTGATGGAGCTGT+TGG 0.601926 1_1:+2332408 Msa0000950:CDS
GTATTTATTGCAGAACGTGA+AGG 0.606998 1_1:+2334663 Msa0000950:intron
AGAAGAAAGTACTGGAGGAG+GGG 0.608480 1_1:+2332303 Msa0000950:five_prime_UTR
GGTGTCCCCATAATTCTGGT+TGG 0.615899 1_1:+2333794 Msa0000950:CDS
GAGTTGAAGCATTATGCACC+TGG 0.616427 1_1:+2333773 Msa0000950:CDS
TCGGCACCACGGTAACTCAA+AGG 0.619029 1_1:-2333520 None:intergenic
TATTAAAGGGAGAAGAGCTG+AGG 0.626553 1_1:+2334513 Msa0000950:intron
TTGTTCCAACCAGAATTATG+GGG 0.627746 1_1:-2333799 None:intergenic
CTGAGCTGTGGTAATGGGAA+CGG 0.629176 1_1:-2334410 None:intergenic
TGTCCTCAGGTGAAGATCTG+AGG 0.631328 1_1:+2332329 Msa0000950:five_prime_UTR
GAAAGCCAATATGAAAACAT+CGG 0.632883 1_1:-2333539 None:intergenic
TTAAGACCTTTGAGTTACCG+TGG 0.650534 1_1:+2333514 Msa0000950:CDS
AGAAGTTGGAGAGTCTGTGT+GGG 0.653335 1_1:+2334860 Msa0000950:three_prime_UTR
TGTGTTAACAACGAAACGAA+CGG 0.653824 1_1:+2332006 Msa0000950:five_prime_UTR
TGACAATTTCAGTGCGAATG+TGG 0.655180 1_1:+2333337 Msa0000950:CDS
AGAACTGCTTATCATCCCGA+AGG 0.656406 1_1:-2334369 None:intergenic
AAGAAGTTGGAGAGTCTGTG+TGG 0.657940 1_1:+2334859 Msa0000950:three_prime_UTR
TAATGGGAACGGCACCAGGA+TGG 0.658560 1_1:-2334399 None:intergenic
TTTATTGCAGAACGTGAAGG+CGG 0.659717 1_1:+2334666 Msa0000950:intron
GATCTCCTTGAAGCATAAGG+TGG 0.664504 1_1:+2334906 Msa0000950:three_prime_UTR
GGGGAATACAGGTAGAACAA+AGG 0.683373 1_1:-2334804 None:intergenic
ATGCAGTTCAAAATCACAGG+AGG 0.690232 1_1:+2334565 Msa0000950:CDS
TAGCCTCAGATCTTCACCTG+AGG 0.705958 1_1:-2332332 None:intergenic
ATATGAAAACATCGGCACCA+CGG 0.709782 1_1:-2333531 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTGAAGAAAAAAAAAAAA+AGG - chr1_1:2332495-2332514 None:intergenic 10.0%
!!! CAATTTCAAATTTTTATTTT+TGG + chr1_1:2332517-2332536 Msa0000950:intron 10.0%
!!! AATTGAAAATTTTGATTTTT+CGG + chr1_1:2332581-2332600 Msa0000950:intron 10.0%
!! TAATGTCTTTAAATTAAAAA+AGG + chr1_1:2332885-2332904 Msa0000950:intron 10.0%
!!! TTATTTTATTTATATTTTGG+TGG + chr1_1:2333416-2333435 Msa0000950:intron 10.0%
!! TTAATACCATATATAAATAT+GGG - chr1_1:2333879-2333898 None:intergenic 10.0%
!! ATTAATACCATATATAAATA+TGG - chr1_1:2333880-2333899 None:intergenic 10.0%
!!! TTTGGAATTTATATGTAATT+GGG + chr1_1:2332995-2333014 Msa0000950:intron 15.0%
!!! AGTTTGTTGAATTTAAAATT+TGG + chr1_1:2333021-2333040 Msa0000950:intron 15.0%
!!! GTTTGTTGAATTTAAAATTT+GGG + chr1_1:2333022-2333041 Msa0000950:intron 15.0%
!! AAATACATAAAAAAACACAA+GGG - chr1_1:2333638-2333657 None:intergenic 15.0%
!! AAAATACATAAAAAAACACA+AGG - chr1_1:2333639-2333658 None:intergenic 15.0%
!!! TTGTGTTTTTTTATGTATTT+TGG + chr1_1:2333638-2333657 Msa0000950:intron 15.0%
!! ATTTATATATGGTATTAATC+AGG + chr1_1:2333881-2333900 Msa0000950:intron 15.0%
!! TTTATATATGGTATTAATCA+GGG + chr1_1:2333882-2333901 Msa0000950:intron 15.0%
!! GAAAATATTTAATACAAATC+TGG - chr1_1:2334216-2334235 None:intergenic 15.0%
!!! TTTATTAAATGTGTTACTGT+TGG + chr1_1:2332393-2332412 Msa0000950:CDS 20.0%
!!! AATTTTTATTTTTGGGTATC+TGG + chr1_1:2332525-2332544 Msa0000950:intron 20.0%
!!! ATTTTTATTTTTGGGTATCT+GGG + chr1_1:2332526-2332545 Msa0000950:intron 20.0%
!!! ATTCTTGTAAATTTGAAATC+TGG + chr1_1:2332622-2332641 Msa0000950:intron 20.0%
!! CAAATCATAATTTACATACT+CGG - chr1_1:2332672-2332691 None:intergenic 20.0%
!!! TAAATTATGATTTGGAATGA+TGG + chr1_1:2332678-2332697 Msa0000950:intron 20.0%
!!! AAATTATGATTTGGAATGAT+GGG + chr1_1:2332679-2332698 Msa0000950:intron 20.0%
!!! GTTTGGAATTTATATGTAAT+TGG + chr1_1:2332994-2333013 Msa0000950:intron 20.0%
!! AGTCATGTAAATTTCAAATT+TGG + chr1_1:2333063-2333082 Msa0000950:intron 20.0%
!! TGTAAATTTCAAATTTGGTA+TGG + chr1_1:2333068-2333087 Msa0000950:intron 20.0%
!! TAATTGTTGGAATTAAAAGT+TGG + chr1_1:2333206-2333225 Msa0000950:intron 20.0%
!! AATTGTTGGAATTAAAAGTT+GGG + chr1_1:2333207-2333226 Msa0000950:intron 20.0%
!!! ATATTGATTTGTGAATTTAC+TGG + chr1_1:2333250-2333269 Msa0000950:intron 20.0%
!! GGATTTATTATGTTTATTTG+TGG + chr1_1:2333466-2333485 Msa0000950:intron 20.0%
!! AATATTAAGTCGAAAAAAAC+TGG - chr1_1:2334313-2334332 None:intergenic 20.0%
!! GATACAAATGACAAAATAAT+AGG - chr1_1:2334341-2334360 None:intergenic 20.0%
!! ATTAAATTAAATCTGACATG+TGG + chr1_1:2334486-2334505 Msa0000950:intron 20.0%
!! TTAAATTAAATCTGACATGT+GGG + chr1_1:2334487-2334506 Msa0000950:intron 20.0%
!! AAAGAAAATGATGAAAAGAA+GGG - chr1_1:2334832-2334851 None:intergenic 20.0%
! AATTGAGAAAATGCAGAATT+GGG - chr1_1:2332152-2332171 None:intergenic 25.0%
! TAATTGAGAAAATGCAGAAT+TGG - chr1_1:2332153-2332172 None:intergenic 25.0%
!! AATTCTGCATTTTCTCAATT+AGG + chr1_1:2332152-2332171 Msa0000950:intron 25.0%
!! ATTCTGCATTTTCTCAATTA+GGG + chr1_1:2332153-2332172 Msa0000950:intron 25.0%
! CGAGTATGTAAATTATGATT+TGG + chr1_1:2332670-2332689 Msa0000950:intron 25.0%
! ACATTTAGTGTTTGATGTAA+AGG + chr1_1:2333140-2333159 Msa0000950:intron 25.0%
!! ATGGATATAATGTGAGATTT+TGG + chr1_1:2333168-2333187 Msa0000950:intron 25.0%
! TTGAGTTTATGTGTAATTGT+TGG + chr1_1:2333193-2333212 Msa0000950:intron 25.0%
!!! TTTGGTGGATTTTTGTTATT+TGG + chr1_1:2333431-2333450 Msa0000950:intron 25.0%
!!! TTGGTGGATTTTTGTTATTT+GGG + chr1_1:2333432-2333451 Msa0000950:intron 25.0%
! ATTATGTTTATTTGTGGAAC+AGG + chr1_1:2333472-2333491 Msa0000950:intron 25.0%
! TTATGTTTATTTGTGGAACA+GGG + chr1_1:2333473-2333492 Msa0000950:intron 25.0%
! TTATGAAAATGTCTCCAAAA+AGG + chr1_1:2333582-2333601 Msa0000950:CDS 25.0%
!!! TATGTATTTTGGTTTATCTG+TGG + chr1_1:2333649-2333668 Msa0000950:intron 25.0%
! CATATATAAATATGGGAAGA+TGG - chr1_1:2333872-2333891 None:intergenic 25.0%
! CATCTTCCCATATTTATATA+TGG + chr1_1:2333870-2333889 Msa0000950:intron 25.0%
! TAGTTGATTATGAAATGCAT+GGG - chr1_1:2333934-2333953 None:intergenic 25.0%
! ATAGTTGATTATGAAATGCA+TGG - chr1_1:2333935-2333954 None:intergenic 25.0%
! AAAACTAAAACAAACCAGAA+AGG - chr1_1:2334155-2334174 None:intergenic 25.0%
!!! ATTTTTTATTCTGCTACTCT+AGG + chr1_1:2334436-2334455 Msa0000950:intron 25.0%
! TTGATTCTTCTAATTCACAA+TGG + chr1_1:2334608-2334627 Msa0000950:intron 25.0%
!! AATGTGAAGTTTAAGTTTGT+TGG + chr1_1:2334638-2334657 Msa0000950:intron 25.0%
! AAAGAAGAATAAAGCACAAA+AGG + chr1_1:2334738-2334757 Msa0000950:CDS 25.0%
! AGTGAATTACAATATTGAAC+AGG - chr1_1:2334764-2334783 None:intergenic 25.0%
! GTTCAATATTGTAATTCACT+AGG + chr1_1:2334764-2334783 Msa0000950:exon 25.0%
! AAGAAAATGATGAAAAGAAG+GGG - chr1_1:2334831-2334850 None:intergenic 25.0%
! CAAAGAAAATGATGAAAAGA+AGG - chr1_1:2334833-2334852 None:intergenic 25.0%
!!! TTCTTTGTTATTGAAGAAGT+TGG + chr1_1:2334846-2334865 Msa0000950:three_prime_UTR 25.0%
ATCACAACTTCGTTCAAAAA+AGG + chr1_1:2331935-2331954 Msa0000950:five_prime_UTR 30.0%
AAGAGGATATACGAAATAGT+TGG + chr1_1:2331978-2331997 Msa0000950:five_prime_UTR 30.0%
AGAAAGAGAAAGAACCTATT+TGG - chr1_1:2332060-2332079 None:intergenic 30.0%
AATGCAGAATTGGGAAATTT+GGG - chr1_1:2332143-2332162 None:intergenic 30.0%
AAATGCAGAATTGGGAAATT+TGG - chr1_1:2332144-2332163 None:intergenic 30.0%
! GAAGAATAAGAAGAAAGTAC+TGG + chr1_1:2332295-2332314 Msa0000950:five_prime_UTR 30.0%
AATTCAAAGTTGAAAAAGCC+AGG - chr1_1:2332565-2332584 None:intergenic 30.0%
!!! AATTTTGATTTTTCGGCGTT+TGG + chr1_1:2332588-2332607 Msa0000950:intron 30.0%
! TGTAAATTTGAAATCTGGCA+TGG + chr1_1:2332627-2332646 Msa0000950:intron 30.0%
!! ATGGGTTGGATGTTAATTTA+AGG + chr1_1:2332697-2332716 Msa0000950:intron 30.0%
! TGGGTTGGATGTTAATTTAA+GGG + chr1_1:2332698-2332717 Msa0000950:intron 30.0%
! TGTTAATTTAAGGGTGTGTT+TGG + chr1_1:2332707-2332726 Msa0000950:intron 30.0%
! GTTAATTTAAGGGTGTGTTT+GGG + chr1_1:2332708-2332727 Msa0000950:intron 30.0%
TGTATCCATTTCAACCTTTA+GGG - chr1_1:2332961-2332980 None:intergenic 30.0%
TTGTATCCATTTCAACCTTT+AGG - chr1_1:2332962-2332981 None:intergenic 30.0%
GTTTGATGTAAAGGTTGAAA+TGG + chr1_1:2333149-2333168 Msa0000950:intron 30.0%
!! ATTTTGTCGAACTTGCTTTT+TGG + chr1_1:2333284-2333303 Msa0000950:intron 30.0%
CTGAAATTGTCAAAAACTGT+CGG - chr1_1:2333329-2333348 None:intergenic 30.0%
!! TAATGGAAGTATTGTGAATC+TGG + chr1_1:2333364-2333383 Msa0000950:CDS 30.0%
!! AATGGAAGTATTGTGAATCT+GGG + chr1_1:2333365-2333384 Msa0000950:CDS 30.0%
GAAAGCCAATATGAAAACAT+CGG - chr1_1:2333542-2333561 None:intergenic 30.0%
! TTTGGAGACATTTTCATAAC+TGG - chr1_1:2333581-2333600 None:intergenic 30.0%
TCTGTGGTGAACAATATATA+CGG + chr1_1:2333665-2333684 Msa0000950:intron 30.0%
TTTGTTCCAACCAGAATTAT+GGG - chr1_1:2333803-2333822 None:intergenic 30.0%
AGTTGATTATGAAATGCATG+GGG - chr1_1:2333933-2333952 None:intergenic 30.0%
AGATACCAGTAGAAAAACAA+TGG - chr1_1:2334096-2334115 None:intergenic 30.0%
CATACATTGTATCTGCAATT+GGG + chr1_1:2334178-2334197 Msa0000950:intron 30.0%
ATACATTGTATCTGCAATTG+GGG + chr1_1:2334179-2334198 Msa0000950:intron 30.0%
TTAATACAAATCTGGAGACA+AGG - chr1_1:2334208-2334227 None:intergenic 30.0%
! TTCTTCTTTTTCTTCTGCTT+TGG - chr1_1:2334727-2334746 None:intergenic 30.0%
TGTGTTAACAACGAAACGAA+CGG + chr1_1:2332006-2332025 Msa0000950:five_prime_UTR 35.0%
TGGGGAAAAAAAAGGAAATG+AGG - chr1_1:2332124-2332143 None:intergenic 35.0%
GGGAAATTTGGGGAAAAAAA+AGG - chr1_1:2332132-2332151 None:intergenic 35.0%
ATGCAGAATTGGGAAATTTG+GGG - chr1_1:2332142-2332161 None:intergenic 35.0%
!! GAATAAGAAGAAAGTACTGG+AGG + chr1_1:2332298-2332317 Msa0000950:five_prime_UTR 35.0%
!! TGAAGATCTGAGGCTATTTT+GGG + chr1_1:2332339-2332358 Msa0000950:five_prime_UTR 35.0%
!! TTTTCAAGATGAGTGCTTCT+AGG + chr1_1:2332370-2332389 Msa0000950:exon 35.0%
! AAATGTGTTACTGTTGGTGA+TGG + chr1_1:2332399-2332418 Msa0000950:CDS 35.0%
!! TATGATTTGGAATGATGGGT+TGG + chr1_1:2332683-2332702 Msa0000950:intron 35.0%
AGGTTGAAATGGATACAATG+TGG + chr1_1:2332964-2332983 Msa0000950:intron 35.0%
GGTTGAAATGGATACAATGT+GGG + chr1_1:2332965-2332984 Msa0000950:intron 35.0%
! ATGGATACAATGTGGGATTT+TGG + chr1_1:2332972-2332991 Msa0000950:intron 35.0%
!!! TACAATGTGGGATTTTGGTT+TGG + chr1_1:2332977-2332996 Msa0000950:intron 35.0%
!! GGTATGGAAAGTACTTTGTA+AGG + chr1_1:2333084-2333103 Msa0000950:intron 35.0%
! AAAGTACTTTGTAAGGCAAC+TGG + chr1_1:2333091-2333110 Msa0000950:intron 35.0%
AAGTACTTTGTAAGGCAACT+GGG + chr1_1:2333092-2333111 Msa0000950:intron 35.0%
TATTGTGAATCTGGGTTTGT+GGG + chr1_1:2333373-2333392 Msa0000950:CDS 35.0%
!!! GTGGATTTTTGTTATTTGGG+AGG + chr1_1:2333435-2333454 Msa0000950:intron 35.0%
! TTCTTGTTCCCATTTTGCTT+TGG + chr1_1:2333609-2333628 Msa0000950:intron 35.0%
CTGTGGTGAACAATATATAC+GGG + chr1_1:2333666-2333685 Msa0000950:intron 35.0%
TTGTTCCAACCAGAATTATG+GGG - chr1_1:2333802-2333821 None:intergenic 35.0%
CTTTGTTCCAACCAGAATTA+TGG - chr1_1:2333804-2333823 None:intergenic 35.0%
!! CATCACCATTGTTTTTCTAC+TGG + chr1_1:2334088-2334107 Msa0000950:intron 35.0%
! GGTATCTGATACATCAGTTT+TGG + chr1_1:2334109-2334128 Msa0000950:intron 35.0%
!! TTTTGATGTTTCTGCCTTTC+TGG + chr1_1:2334138-2334157 Msa0000950:intron 35.0%
CCAATTGCAGATACAATGTA+TGG - chr1_1:2334180-2334199 None:intergenic 35.0%
CCATACATTGTATCTGCAAT+TGG + chr1_1:2334177-2334196 Msa0000950:intron 35.0%
AGCTAACAAAACTACTCGAT+GGG - chr1_1:2334248-2334267 None:intergenic 35.0%
AAGCTAACAAAACTACTCGA+TGG - chr1_1:2334249-2334268 None:intergenic 35.0%
TTAGCTTCCAGTTAGACAAA+TGG + chr1_1:2334262-2334281 Msa0000950:intron 35.0%
AAAAAACTGGTACACTGATC+AGG - chr1_1:2334300-2334319 None:intergenic 35.0%
TTTGTATCGAGATAGACCTT+CGG + chr1_1:2334353-2334372 Msa0000950:intron 35.0%
ATAAAAAATCACCTGAGCTG+TGG - chr1_1:2334425-2334444 None:intergenic 35.0%
TGAATGCAGTTCAAAATCAC+AGG + chr1_1:2334562-2334581 Msa0000950:CDS 35.0%
! TCAAAATCACAGGAGGTATA+TGG + chr1_1:2334572-2334591 Msa0000950:intron 35.0%
GTATTTATTGCAGAACGTGA+AGG + chr1_1:2334663-2334682 Msa0000950:intron 35.0%
! TTCTTTTTCTTCTGCTTTGG+TGG - chr1_1:2334724-2334743 None:intergenic 35.0%
AAATGATGAAAAGAAGGGGA+GGG - chr1_1:2334827-2334846 None:intergenic 35.0%
AAAATGATGAAAAGAAGGGG+AGG - chr1_1:2334828-2334847 None:intergenic 35.0%
TAATTGCCTTCTTCTCTCAC+AGG + chr1_1:2332088-2332107 Msa0000950:five_prime_UTR 40.0%
AATTGCCTTCTTCTCTCACA+GGG + chr1_1:2332089-2332108 Msa0000950:five_prime_UTR 40.0%
!! TAAGAAGAAAGTACTGGAGG+AGG + chr1_1:2332301-2332320 Msa0000950:five_prime_UTR 40.0%
!! AAGAAGAAAGTACTGGAGGA+GGG + chr1_1:2332302-2332321 Msa0000950:five_prime_UTR 40.0%
!! GTGAAGATCTGAGGCTATTT+TGG + chr1_1:2332338-2332357 Msa0000950:five_prime_UTR 40.0%
CTGGGTTGTGTTTAAATTCC+TGG + chr1_1:2332544-2332563 Msa0000950:intron 40.0%
GGCATGGAAAATGCTTTGTA+AGG + chr1_1:2332643-2332662 Msa0000950:intron 40.0%
!! TCAACCTTTAGGGTGTGTTT+GGG - chr1_1:2332951-2332970 None:intergenic 40.0%
!! TTCAACCTTTAGGGTGTGTT+TGG - chr1_1:2332952-2332971 None:intergenic 40.0%
ACACACCCTAAAGGTTGAAA+TGG + chr1_1:2332953-2332972 Msa0000950:intron 40.0%
!!! TGTCGAACTTGCTTTTTGGT+TGG + chr1_1:2333288-2333307 Msa0000950:intron 40.0%
!!! CTTGCTTTTTGGTTGGAAAC+AGG + chr1_1:2333295-2333314 Msa0000950:intron 40.0%
TGACAATTTCAGTGCGAATG+TGG + chr1_1:2333337-2333356 Msa0000950:CDS 40.0%
AGTGCGAATGTGGTTGTTAA+TGG + chr1_1:2333347-2333366 Msa0000950:CDS 40.0%
GTATTGTGAATCTGGGTTTG+TGG + chr1_1:2333372-2333391 Msa0000950:CDS 40.0%
GTTATTTGGGAGGTTCTTTC+TGG + chr1_1:2333445-2333464 Msa0000950:intron 40.0%
! TTAAGACCTTTGAGTTACCG+TGG + chr1_1:2333514-2333533 Msa0000950:CDS 40.0%
ATATGAAAACATCGGCACCA+CGG - chr1_1:2333534-2333553 None:intergenic 40.0%
!!! TGGTGCCGATGTTTTCATAT+TGG + chr1_1:2333534-2333553 Msa0000950:CDS 40.0%
!!! GGAACAAGAAAGCACCTTTT+TGG - chr1_1:2333599-2333618 None:intergenic 40.0%
AAGGGACACCAAAGCAAAAT+GGG - chr1_1:2333620-2333639 None:intergenic 40.0%
! CGTGCTTGTTTCATTTTCAG+TGG + chr1_1:2333744-2333763 Msa0000950:intron 40.0%
! ATTCTGGTTGGAACAAAGCT+TGG + chr1_1:2333806-2333825 Msa0000950:CDS 40.0%
GAAGTTTCCATTTGTCGAAC+TGG + chr1_1:2333977-2333996 Msa0000950:intron 40.0%
!! ACCGGTTCTTTTTGTTTGCT+AGG + chr1_1:2334011-2334030 Msa0000950:intron 40.0%
CCCTAGCAAACAAAAAGAAC+CGG - chr1_1:2334015-2334034 None:intergenic 40.0%
!! CCGGTTCTTTTTGTTTGCTA+GGG + chr1_1:2334012-2334031 Msa0000950:intron 40.0%
!! CGGTTCTTTTTGTTTGCTAG+GGG + chr1_1:2334013-2334032 Msa0000950:intron 40.0%
!! GGTTCTTTTTGTTTGCTAGG+GGG + chr1_1:2334014-2334033 Msa0000950:intron 40.0%
!! TTTTTGTTTGCTAGGGGGAA+GGG + chr1_1:2334019-2334038 Msa0000950:intron 40.0%
AGCACAACCATTTGTCTAAC+TGG - chr1_1:2334272-2334291 None:intergenic 40.0%
TTGTATCGAGATAGACCTTC+GGG + chr1_1:2334354-2334373 Msa0000950:intron 40.0%
TGACATGTGGGTCCTATTAA+AGG + chr1_1:2334499-2334518 Msa0000950:intron 40.0%
GACATGTGGGTCCTATTAAA+GGG + chr1_1:2334500-2334519 Msa0000950:intron 40.0%
TCAGCTCTTCTCCCTTTAAT+AGG - chr1_1:2334514-2334533 None:intergenic 40.0%
TATTAAAGGGAGAAGAGCTG+AGG + chr1_1:2334513-2334532 Msa0000950:intron 40.0%
GAACTGCATTCAATGTAAGC+TGG - chr1_1:2334554-2334573 None:intergenic 40.0%
ATGCAGTTCAAAATCACAGG+AGG + chr1_1:2334565-2334584 Msa0000950:CDS 40.0%
TTTATTGCAGAACGTGAAGG+CGG + chr1_1:2334666-2334685 Msa0000950:intron 40.0%
TGGTTGAAGGACAACTCTTA+TGG - chr1_1:2334704-2334723 None:intergenic 40.0%
AATGATGAAAAGAAGGGGAG+GGG - chr1_1:2334826-2334845 None:intergenic 40.0%
CTAGATCTCCTTGAAGCATA+AGG + chr1_1:2334903-2334922 Msa0000950:three_prime_UTR 40.0%
TTAAGCCACCTTATGCTTCA+AGG - chr1_1:2334914-2334933 None:intergenic 40.0%
CACACTCTCAGCTTCCAAAT+AGG + chr1_1:2332043-2332062 Msa0000950:five_prime_UTR 45.0%
CTTCTTCTCTCACAGGGTTA+GGG + chr1_1:2332095-2332114 Msa0000950:intron 45.0%
!! AGAAGAAAGTACTGGAGGAG+GGG + chr1_1:2332303-2332322 Msa0000950:five_prime_UTR 45.0%
GAGAAGAATGACAAACCGTG+GGG - chr1_1:2332473-2332492 None:intergenic 45.0%
GGAGAAGAATGACAAACCGT+GGG - chr1_1:2332474-2332493 None:intergenic 45.0%
AGGAGAAGAATGACAAACCG+TGG - chr1_1:2332475-2332494 None:intergenic 45.0%
! TTAAGGGTGTGTTTGGGAAG+AGG + chr1_1:2332714-2332733 Msa0000950:intron 45.0%
! TAAGGGTGTGTTTGGGAAGA+GGG + chr1_1:2332715-2332734 Msa0000950:intron 45.0%
TGTGTTTGGGAAGAGGGTTT+AGG + chr1_1:2332721-2332740 Msa0000950:intron 45.0%
TTTGGGAAGAGGGTTTAGGA+GGG + chr1_1:2332725-2332744 Msa0000950:intron 45.0%
TGTGTTTGGGAAGAGGGTTT+GGG - chr1_1:2332721-2332740 None:intergenic 45.0%
TTAGGGTGTGTTTGGGAAGA+GGG - chr1_1:2332944-2332963 None:intergenic 45.0%
! TTTAGGGTGTGTTTGGGAAG+AGG - chr1_1:2332945-2332964 None:intergenic 45.0%
TCTTCCCAAACACACCCTAA+AGG + chr1_1:2332944-2332963 Msa0000950:intron 45.0%
TTGTGGGATACTGCTGGTAA+TGG + chr1_1:2333389-2333408 Msa0000950:intron 45.0%
TATTTGTGGAACAGGGCAAG+AGG + chr1_1:2333480-2333499 Msa0000950:intron 45.0%
CAAGGGACACCAAAGCAAAA+TGG - chr1_1:2333621-2333640 None:intergenic 45.0%
GGTGCATAATGCTTCAACTC+TGG - chr1_1:2333773-2333792 None:intergenic 45.0%
! GAGTTGAAGCATTATGCACC+TGG + chr1_1:2333773-2333792 Msa0000950:CDS 45.0%
CAGTTAGCCAGTTCGACAAA+TGG - chr1_1:2333987-2334006 None:intergenic 45.0%
!! CTTTTTGTTTGCTAGGGGGA+AGG + chr1_1:2334018-2334037 Msa0000950:intron 45.0%
!! TTTTGTTTGCTAGGGGGAAG+GGG + chr1_1:2334020-2334039 Msa0000950:intron 45.0%
AGAACTGCTTATCATCCCGA+AGG - chr1_1:2334372-2334391 None:intergenic 45.0%
ATCACCTGAGCTGTGGTAAT+GGG - chr1_1:2334418-2334437 None:intergenic 45.0%
AATCACCTGAGCTGTGGTAA+TGG - chr1_1:2334419-2334438 None:intergenic 45.0%
! TCTTCTGCTTTGGTGGTTGA+AGG - chr1_1:2334717-2334736 None:intergenic 45.0%
GGGGAATACAGGTAGAACAA+AGG - chr1_1:2334807-2334826 None:intergenic 45.0%
AAGAAGTTGGAGAGTCTGTG+TGG + chr1_1:2334859-2334878 Msa0000950:three_prime_UTR 45.0%
AGAAGTTGGAGAGTCTGTGT+GGG + chr1_1:2334860-2334879 Msa0000950:three_prime_UTR 45.0%
GATCTCCTTGAAGCATAAGG+TGG + chr1_1:2334906-2334925 Msa0000950:three_prime_UTR 45.0%
!! TAAAATAATAAAAAAATAAG+AGG + chr1_1:2331961-2331980 Msa0000950:five_prime_UTR 5.0%
!!! AATTTCAAATTTTTATTTTT+GGG + chr1_1:2332518-2332537 Msa0000950:intron 5.0%
!!! TTGTTATTTTATTTATATTT+TGG + chr1_1:2333413-2333432 Msa0000950:intron 5.0%
!! ATAAAAACTTAAAAAAATAT+GGG - chr1_1:2334998-2335017 None:intergenic 5.0%
!! AATAAAAACTTAAAAAAATA+TGG - chr1_1:2334999-2335018 None:intergenic 5.0%
CCTAACCCTGTGAGAGAAGA+AGG - chr1_1:2332097-2332116 None:intergenic 50.0%
CCTTCTTCTCTCACAGGGTT+AGG + chr1_1:2332094-2332113 Msa0000950:intron 50.0%
TGTCCTCAGGTGAAGATCTG+AGG + chr1_1:2332329-2332348 Msa0000950:five_prime_UTR 50.0%
TAGCCTCAGATCTTCACCTG+AGG - chr1_1:2332335-2332354 None:intergenic 50.0%
!! ACTGTTGGTGATGGAGCTGT+TGG + chr1_1:2332408-2332427 Msa0000950:CDS 50.0%
CACCAGCAATACTTTCCCCA+CGG + chr1_1:2332455-2332474 Msa0000950:CDS 50.0%
!! AACCGTGGGGAAAGTATTGC+TGG - chr1_1:2332460-2332479 None:intergenic 50.0%
GTTTGGGAAGAGGGTTTAGG+AGG + chr1_1:2332724-2332743 Msa0000950:intron 50.0%
TTGGGAAGAGGGTTTAGGAG+GGG + chr1_1:2332726-2332745 Msa0000950:intron 50.0%
AAGAGGGTTTAGGAGGGGAA+GGG + chr1_1:2332731-2332750 Msa0000950:intron 50.0%
AAGAGGGTTTGGGAAGGGAA+GGG - chr1_1:2332928-2332947 None:intergenic 50.0%
TTGGGAAGAGGGTTTGGGAA+GGG - chr1_1:2332933-2332952 None:intergenic 50.0%
TTTGGGAAGAGGGTTTGGGA+AGG - chr1_1:2332934-2332953 None:intergenic 50.0%
GTGTGTTTGGGAAGAGGGTT+TGG - chr1_1:2332720-2332739 None:intergenic 50.0%
ACCTGGTGTCCCCATAATTC+TGG + chr1_1:2333790-2333809 Msa0000950:CDS 50.0%
ACCAGAATTATGGGGACACC+AGG - chr1_1:2333794-2333813 None:intergenic 50.0%
GGTGTCCCCATAATTCTGGT+TGG + chr1_1:2333794-2333813 Msa0000950:CDS 50.0%
GAACTGGCTAACTGCTGAAC+CGG + chr1_1:2333993-2334012 Msa0000950:intron 50.0%
! TTTGTTTGCTAGGGGGAAGG+GGG + chr1_1:2334021-2334040 Msa0000950:intron 50.0%
CAGTTCTGCATAGACCATCC+TGG + chr1_1:2334385-2334404 Msa0000950:CDS 50.0%
!! CTGAGCTGTGGTAATGGGAA+CGG - chr1_1:2334413-2334432 None:intergenic 50.0%
AAAGAAGGGGAGGGGAATAC+AGG - chr1_1:2334818-2334837 None:intergenic 50.0%
GAAGAGGGTTTAGGAGGGGA+AGG + chr1_1:2332730-2332749 Msa0000950:intron 55.0%
GAAGAGGGTTTGGGAAGGGA+AGG - chr1_1:2332929-2332948 None:intergenic 55.0%
CTGGGTTTGTGGGATACTGC+TGG + chr1_1:2333383-2333402 Msa0000950:CDS 55.0%
TCGGCACCACGGTAACTCAA+AGG - chr1_1:2333523-2333542 None:intergenic 55.0%
! TTGTTTGCTAGGGGGAAGGG+GGG + chr1_1:2334022-2334041 Msa0000950:intron 55.0%
TAATGGGAACGGCACCAGGA+TGG - chr1_1:2334402-2334421 None:intergenic 55.0%
CGTTCCCATTACCACAGCTC+AGG + chr1_1:2334411-2334430 Msa0000950:CDS 55.0%
AGGGTTTAGGAGGGGAAGGG+AGG + chr1_1:2332734-2332753 Msa0000950:intron 60.0%
GGGTTTAGGAGGGGAAGGGA+GGG + chr1_1:2332735-2332754 Msa0000950:intron 60.0%
GGTTTAGGAGGGGAAGGGAG+GGG + chr1_1:2332736-2332755 Msa0000950:intron 60.0%
GGTTTGGGAAGGGAAGGGAG+GGG - chr1_1:2332923-2332942 None:intergenic 60.0%
GGGTTTGGGAAGGGAAGGGA+GGG - chr1_1:2332924-2332943 None:intergenic 60.0%
AGGGTTTGGGAAGGGAAGGG+AGG - chr1_1:2332925-2332944 None:intergenic 60.0%
TAGGGGGAAGGGGGGATTTC+TGG + chr1_1:2334030-2334049 Msa0000950:intron 60.0%
!! GTGGTAATGGGAACGGCACC+AGG - chr1_1:2334406-2334425 None:intergenic 60.0%
GGAGGAGGGGAACTGTCCTC+AGG + chr1_1:2332316-2332335 Msa0000950:five_prime_UTR 65.0%
TTAGGAGGGGAAGGGAGGGG+AGG + chr1_1:2332739-2332758 Msa0000950:intron 65.0%
TAGGAGGGGAAGGGAGGGGA+GGG + chr1_1:2332740-2332759 Msa0000950:intron 65.0%
TGGGAAGGGAAGGGAGGGGA+GGG - chr1_1:2332919-2332938 None:intergenic 65.0%
TTGGGAAGGGAAGGGAGGGG+AGG - chr1_1:2332920-2332939 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 2331903 2335075 2331903 ID=Msa0000950;Name=Msa0000950
chr1_1 mRNA 2331903 2335075 2331903 ID=Msa0000950-mRNA-1;Parent=Msa0000950;Name=Msa0000950-mRNA-1;_AED=0.05;_eAED=0.05;_QI=316|1|1|1|0.85|0.75|8|298|197
chr1_1 exon 2331903 2332110 2331903 ID=Msa0000950-mRNA-1:exon:473;Parent=Msa0000950-mRNA-1
chr1_1 exon 2332270 2332476 2332270 ID=Msa0000950-mRNA-1:exon:474;Parent=Msa0000950-mRNA-1
chr1_1 exon 2333317 2333404 2333317 ID=Msa0000950-mRNA-1:exon:475;Parent=Msa0000950-mRNA-1
chr1_1 exon 2333494 2333603 2333494 ID=Msa0000950-mRNA-1:exon:476;Parent=Msa0000950-mRNA-1
chr1_1 exon 2333764 2333827 2333764 ID=Msa0000950-mRNA-1:exon:477;Parent=Msa0000950-mRNA-1
chr1_1 exon 2334368 2334432 2334368 ID=Msa0000950-mRNA-1:exon:478;Parent=Msa0000950-mRNA-1
chr1_1 exon 2334521 2334586 2334521 ID=Msa0000950-mRNA-1:exon:479;Parent=Msa0000950-mRNA-1
chr1_1 exon 2334676 2335075 2334676 ID=Msa0000950-mRNA-1:exon:480;Parent=Msa0000950-mRNA-1
chr1_1 five_prime_UTR 2331903 2332110 2331903 ID=Msa0000950-mRNA-1:five_prime_utr;Parent=Msa0000950-mRNA-1
chr1_1 five_prime_UTR 2332270 2332377 2332270 ID=Msa0000950-mRNA-1:five_prime_utr;Parent=Msa0000950-mRNA-1
chr1_1 CDS 2332378 2332476 2332378 ID=Msa0000950-mRNA-1:cds;Parent=Msa0000950-mRNA-1
chr1_1 CDS 2333317 2333404 2333317 ID=Msa0000950-mRNA-1:cds;Parent=Msa0000950-mRNA-1
chr1_1 CDS 2333494 2333603 2333494 ID=Msa0000950-mRNA-1:cds;Parent=Msa0000950-mRNA-1
chr1_1 CDS 2333764 2333827 2333764 ID=Msa0000950-mRNA-1:cds;Parent=Msa0000950-mRNA-1
chr1_1 CDS 2334368 2334432 2334368 ID=Msa0000950-mRNA-1:cds;Parent=Msa0000950-mRNA-1
chr1_1 CDS 2334521 2334586 2334521 ID=Msa0000950-mRNA-1:cds;Parent=Msa0000950-mRNA-1
chr1_1 CDS 2334676 2334777 2334676 ID=Msa0000950-mRNA-1:cds;Parent=Msa0000950-mRNA-1
chr1_1 three_prime_UTR 2334778 2335075 2334778 ID=Msa0000950-mRNA-1:three_prime_utr;Parent=Msa0000950-mRNA-1
Gene Sequence

>Msa0000950

ATGAGTGCTTCTAGGTTTATTAAATGTGTTACTGTTGGTGATGGAGCTGTTGGAAAAACTTGTTTGTTGATTTCTTACACCAGCAATACTTTCCCCACGGATTATGTGCCGACAGTTTTTGACAATTTCAGTGCGAATGTGGTTGTTAATGGAAGTATTGTGAATCTGGGTTTGTGGGATACTGCTGGGCAAGAGGATTATAACAGATTAAGACCTTTGAGTTACCGTGGTGCCGATGTTTTCATATTGGCTTTCTCTCTCATAAGCAAAGCCAGTTATGAAAATGTCTCCAAAAAGTGGATTCCAGAGTTGAAGCATTATGCACCTGGTGTCCCCATAATTCTGGTTGGAACAAAGCTTGACCTTCGGGATGATAAGCAGTTCTGCATAGACCATCCTGGTGCCGTTCCCATTACCACAGCTCAGGGAGAAGAGCTGAGGAAGCTGATTAATGCACCAGCTTACATTGAATGCAGTTCAAAATCACAGGAGAACGTGAAGGCGGTGTTTGACGCAGCCATAAGAGTTGTCCTTCAACCACCAAAGCAGAAGAAAAAGAAGAATAAAGCACAAAAGGCCTGTTCAATATTGTAA
Protein sequence

>Msa0000950

MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSIVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFCIDHPGAVPITTAQGEELRKLINAPAYIECSSKSQENVKAVFDAAIRVVLQPPKQKKKKNKAQKACSIL*