Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0001500 | sp|Q9SDX3|UGPA_MUSAC | 48.673 | 452 | 212 | 5 | 195 | 629 | 19 | 467 | 8.43e-135 | 405 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001500 | Msa0090770 | 0.802049 | 6.746995e-49 | -8.615850e-47 |
| Msa0001500 | Msa0183640 | 0.811691 | 6.168180e-51 | -8.615850e-47 |
| Msa0001500 | Msa0380350 | 0.979487 | 4.465049e-148 | -8.615850e-47 |
| Msa0001500 | Msa1365700 | 0.907829 | 3.317723e-81 | -8.615850e-47 |
| Msa0001500 | Msa1376600 | 0.850403 | 1.736941e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0001500 | MtrunA17_Chr3g0145841 | 96.693 | 635 | 14 | 4 | 1 | 631 | 1 | 632 | 0.0 | 1245 |
| Msa0001500 | MtrunA17_Chr5g0433871 | 50.000 | 430 | 197 | 4 | 217 | 629 | 42 | 470 | 1.41e-121 | 369 |
| Msa0001500 | MtrunA17_Chr3g0109761 | 48.338 | 331 | 157 | 3 | 312 | 629 | 2 | 331 | 7.66e-101 | 310 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0001500 | AT3G03250.1 | 49.767 | 430 | 198 | 4 | 217 | 629 | 41 | 469 | 7.55e-125 | 377 |
| Msa0001500 | AT3G03250.2 | 49.764 | 424 | 195 | 4 | 217 | 623 | 41 | 463 | 1.04e-123 | 375 |
| Msa0001500 | AT3G03250.3 | 50.000 | 422 | 193 | 4 | 217 | 621 | 41 | 461 | 1.80e-123 | 374 |
| Msa0001500 | AT5G17310.2 | 46.903 | 452 | 220 | 5 | 195 | 629 | 22 | 470 | 3.09e-120 | 365 |
| Msa0001500 | AT5G17310.5 | 49.596 | 371 | 170 | 3 | 276 | 629 | 20 | 390 | 3.71e-115 | 350 |
| Msa0001500 | AT5G17310.1 | 49.596 | 371 | 170 | 3 | 276 | 629 | 20 | 390 | 3.71e-115 | 350 |
| Msa0001500 | AT5G17310.3 | 49.730 | 370 | 169 | 3 | 277 | 629 | 16 | 385 | 9.97e-115 | 348 |
| Msa0001500 | AT5G17310.6 | 49.254 | 335 | 153 | 3 | 312 | 629 | 2 | 336 | 2.45e-100 | 309 |
| Msa0001500 | AT5G17310.4 | 49.254 | 335 | 153 | 3 | 312 | 629 | 2 | 336 | 2.45e-100 | 309 |
| Msa0001500 | AT3G03600.1 | 62.000 | 200 | 73 | 1 | 1 | 197 | 1 | 200 | 2.16e-84 | 264 |
Find 181 sgRNAs with CRISPR-Local
Find 630 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTCAACCGTTGGATATTA+TGG | 0.198596 | 1_1:-3190097 | None:intergenic |
| TCATGCCTCCGGAACAAATA+TGG | 0.222520 | 1_1:+3191387 | Msa0001500:CDS |
| TGCAAAACCGGGCTTGAAAT+TGG | 0.242884 | 1_1:+3196855 | Msa0001500:CDS |
| CCAGTATAGTAAGTATTCTT+TGG | 0.255537 | 1_1:-3190367 | None:intergenic |
| TGAACAAACTAAGAATCTTT+TGG | 0.267833 | 1_1:+3191339 | Msa0001500:CDS |
| CACTCATGATAGTACTTTAA+AGG | 0.273991 | 1_1:+3191841 | Msa0001500:CDS |
| CTTTGAGCTTATGTCCAAAA+AGG | 0.277828 | 1_1:+3190750 | Msa0001500:CDS |
| TATAATACCTCCAATTAAAT+AGG | 0.279423 | 1_1:-3199510 | None:intergenic |
| TGGAGTTGTGATTGAGAATA+AGG | 0.300476 | 1_1:+3196888 | Msa0001500:CDS |
| CGTGACTATTGTTGCAAAAC+CGG | 0.304515 | 1_1:+3196843 | Msa0001500:CDS |
| TGAGAGGCGACGTGTGGTTT+GGG | 0.308284 | 1_1:+3195509 | Msa0001500:CDS |
| TTAATTGGAGGTATTATATT+CGG | 0.319117 | 1_1:+3199515 | Msa0001500:three_prime_UTR |
| AAGAAACAAATAACAAGTTT+TGG | 0.320342 | 1_1:+3199291 | Msa0001500:three_prime_UTR |
| TACGATCTGTTATGCTTTGA+AGG | 0.323618 | 1_1:+3190336 | Msa0001500:five_prime_UTR |
| GTTGCGAGATCGAAACTTCT+TGG | 0.325917 | 1_1:-3190842 | None:intergenic |
| TAGACGCTAAATGAACTAAA+TGG | 0.326381 | 1_1:-3190056 | None:intergenic |
| ATTGGTGAACCATTCATTCT+TGG | 0.328350 | 1_1:-3199150 | None:intergenic |
| CAATTATTTCATCACTGTTA+TGG | 0.332739 | 1_1:-3199319 | None:intergenic |
| GGAGAAGGAGAAGAGTAATT+TGG | 0.337508 | 1_1:+3191167 | Msa0001500:CDS |
| AAGCAATGCGGCTGAAAGTA+TGG | 0.339549 | 1_1:-3191002 | None:intergenic |
| AATTGAACAGAGGGGTTAAC+AGG | 0.340725 | 1_1:-3191033 | None:intergenic |
| CTATCCAACCCCACGATACT+TGG | 0.342114 | 1_1:-3195478 | None:intergenic |
| TATTTGTTTCTTCAACCTTT+CGG | 0.343324 | 1_1:-3199280 | None:intergenic |
| ATGTTCCATTCTCAGATTGC+TGG | 0.348622 | 1_1:+3195430 | Msa0001500:intron |
| CATACAAATCAAAGTCTTAT+CGG | 0.349904 | 1_1:-3190641 | None:intergenic |
| AGGAATTGTACCTTTGAGAT+TGG | 0.363802 | 1_1:-3194534 | None:intergenic |
| GGAATTGTACCTTTGAGATT+GGG | 0.368076 | 1_1:-3194533 | None:intergenic |
| TTGAAAACCCATATTTGTTC+CGG | 0.368093 | 1_1:-3191395 | None:intergenic |
| TGGAACCCGGCTTCCGTACT+TGG | 0.371009 | 1_1:-3191795 | None:intergenic |
| CAAGGGAACAAAACGAGATT+CGG | 0.372900 | 1_1:-3195116 | None:intergenic |
| GGTATTTGTTTCTAATGAAT+AGG | 0.379270 | 1_1:+3199180 | Msa0001500:three_prime_UTR |
| AAAGACTTACATCTTTATCT+TGG | 0.380478 | 1_1:-3194181 | None:intergenic |
| TTCTCAATCACAACTCCATC+TGG | 0.381348 | 1_1:-3196883 | None:intergenic |
| AAATGCACCTTAAAATTCAT+TGG | 0.382777 | 1_1:-3193503 | None:intergenic |
| TTGCGAGATCGAAACTTCTT+GGG | 0.402017 | 1_1:-3190841 | None:intergenic |
| CTTCTCGAGAAGCAGTGTTT+TGG | 0.409136 | 1_1:-3191082 | None:intergenic |
| GTGAGAGGCGACGTGTGGTT+TGG | 0.410735 | 1_1:+3195508 | Msa0001500:CDS |
| CCAAAGAATACTTACTATAC+TGG | 0.411067 | 1_1:+3190367 | Msa0001500:five_prime_UTR |
| TCCAATTCTCTCTGGCGTAC+TGG | 0.414072 | 1_1:+3190793 | Msa0001500:CDS |
| CATTTCAAAGATTACACTTA+CGG | 0.415466 | 1_1:+3190589 | Msa0001500:CDS |
| ACCAGTACGCCAGAGAGAAT+TGG | 0.424267 | 1_1:-3190794 | None:intergenic |
| TCTTCCCTTGCTCGTCATAA+TGG | 0.433968 | 1_1:+3190685 | Msa0001500:CDS |
| ATATTCCGTTCACTAATGAT+AGG | 0.443745 | 1_1:+3192895 | Msa0001500:CDS |
| TGGGGCAAATATTACTTTGA+AGG | 0.448244 | 1_1:+3195528 | Msa0001500:CDS |
| ATCGACAATGACGATGCAAT+CGG | 0.448666 | 1_1:-3190896 | None:intergenic |
| GCTTCCGTACTTGGAGTTGA+GGG | 0.453661 | 1_1:-3191786 | None:intergenic |
| TTTAAAGCGTCGGTTCTAGC+TGG | 0.455824 | 1_1:-3195305 | None:intergenic |
| CATGCCTCCGGAACAAATAT+GGG | 0.463448 | 1_1:+3191388 | Msa0001500:CDS |
| GTGGTGTACTACTACCTTGA+GGG | 0.464198 | 1_1:-3191242 | None:intergenic |
| TGAGTTTAAGAACCATTAAG+AGG | 0.464580 | 1_1:+3194475 | Msa0001500:CDS |
| GAATCGACAAGAGCGACAAT+TGG | 0.465763 | 1_1:-3190967 | None:intergenic |
| AGTAATTTGGCAGCTAAGCT+TGG | 0.466826 | 1_1:+3191180 | Msa0001500:CDS |
| GCACGGCAAATCAAAGCATC+TGG | 0.470494 | 1_1:-3199208 | None:intergenic |
| CGCAACAAGAAACTCTGCTT+CGG | 0.474889 | 1_1:+3190859 | Msa0001500:CDS |
| ATCAGATTTACTGCTTCTGC+AGG | 0.475211 | 1_1:+3195147 | Msa0001500:CDS |
| ATAAATGTCTGACCTCAATC+TGG | 0.475272 | 1_1:-3191569 | None:intergenic |
| ACGACGCAAGCTGAAATAAG+AGG | 0.476193 | 1_1:-3190250 | None:intergenic |
| CCTGGATTTATTATTGTCAC+AGG | 0.477736 | 1_1:+3192924 | Msa0001500:CDS |
| CTTCTTGGGACTGTTGCTGT+TGG | 0.480287 | 1_1:-3190827 | None:intergenic |
| AACAGAGGGGTTAACAGGAA+TGG | 0.486093 | 1_1:-3191028 | None:intergenic |
| ATTACTCTTCTCCTTCTCCT+TGG | 0.487507 | 1_1:-3191163 | None:intergenic |
| CCATCTGATAATGTTAGCTC+TGG | 0.488544 | 1_1:-3192105 | None:intergenic |
| TTGAAGCTCAATCATGCCTC+CGG | 0.491024 | 1_1:+3191376 | Msa0001500:CDS |
| GCCCCTCTTCCAATTCTCTC+TGG | 0.493204 | 1_1:+3190785 | Msa0001500:CDS |
| CCTGTGACAATAATAAATCC+AGG | 0.494692 | 1_1:-3192924 | None:intergenic |
| ACAGAGGGGTTAACAGGAAT+GGG | 0.495983 | 1_1:-3191027 | None:intergenic |
| TAATGTAAAATCTCAACCGT+TGG | 0.497640 | 1_1:-3190106 | None:intergenic |
| AGATGCTGGACCGGCAGTAC+AGG | 0.497972 | 1_1:+3194657 | Msa0001500:CDS |
| CAGTTCTTTGATAATGCGAT+TGG | 0.498035 | 1_1:+3195082 | Msa0001500:intron |
| GTGACTATTGTTGCAAAACC+GGG | 0.498486 | 1_1:+3196844 | Msa0001500:CDS |
| AAAAGTGCGCACATCAATGC+TGG | 0.499284 | 1_1:-3191981 | None:intergenic |
| TCAACTCCAAGTACGGAAGC+CGG | 0.499412 | 1_1:+3191789 | Msa0001500:CDS |
| TCGACAATGACGATGCAATC+GGG | 0.500294 | 1_1:-3190895 | None:intergenic |
| TGCAGATATCCAAGAATGAA+TGG | 0.501034 | 1_1:+3199141 | Msa0001500:exon |
| GGCTTCCGTACTTGGAGTTG+AGG | 0.502670 | 1_1:-3191787 | None:intergenic |
| AATGAAAATACCTGTACTGC+CGG | 0.504944 | 1_1:-3194667 | None:intergenic |
| GAAGAGACTATGTAGTATCA+AGG | 0.506119 | 1_1:-3199438 | None:intergenic |
| CGCCAGAGAGAATTGGAAGA+GGG | 0.506319 | 1_1:-3190787 | None:intergenic |
| AGATTGCTGGCTTTCGAAGT+CGG | 0.507646 | 1_1:+3195443 | Msa0001500:intron |
| CTTGATCATTAACCAGATTG+AGG | 0.508702 | 1_1:+3191557 | Msa0001500:CDS |
| AGATAGACAAATTGAACAGA+GGG | 0.508931 | 1_1:-3191042 | None:intergenic |
| TAAATCTGATGTTGCATCCA+AGG | 0.511158 | 1_1:-3195134 | None:intergenic |
| CTTCTACAAGGAACAGATGC+TGG | 0.513459 | 1_1:+3194643 | Msa0001500:CDS |
| CAAGGGTGATATAGCATCGT+AGG | 0.516295 | 1_1:-3191217 | None:intergenic |
| GAATGGTTCACCAATGTTGA+GGG | 0.517544 | 1_1:+3199158 | Msa0001500:exon |
| GCAACAGTTGTCACGCATAG+AGG | 0.518529 | 1_1:-3190157 | None:intergenic |
| CATTCCAAGTATCGTGGGGT+TGG | 0.522731 | 1_1:+3195474 | Msa0001500:CDS |
| CAACTCCAAGTACGGAAGCC+GGG | 0.523495 | 1_1:+3191790 | Msa0001500:CDS |
| AATGATGAGTGGCGACTTGA+CGG | 0.524133 | 1_1:-3190570 | None:intergenic |
| GGAATTTCCAATTTCAAGCC+CGG | 0.527588 | 1_1:-3196862 | None:intergenic |
| TCATAATCTAAGTAGGGTAA+AGG | 0.529652 | 1_1:+3192081 | Msa0001500:intron |
| TTGTTTACTGTACAACGAGT+TGG | 0.529919 | 1_1:+3199463 | Msa0001500:three_prime_UTR |
| AAGGGAACAAAACGAGATTC+GGG | 0.535779 | 1_1:-3195115 | None:intergenic |
| GACTTATTGTTATATACCGA+CGG | 0.537556 | 1_1:+3199542 | Msa0001500:three_prime_UTR |
| ACAAGGAACAGATGCTGGAC+CGG | 0.539255 | 1_1:+3194648 | Msa0001500:CDS |
| GCGGTGTGGACGGAGGTTGA+CGG | 0.541750 | 1_1:-3190200 | None:intergenic |
| AATTCTCTCTGGCGTACTGG+TGG | 0.544639 | 1_1:+3190796 | Msa0001500:CDS |
| TTGGATAGTTTGATTGTGAG+AGG | 0.544817 | 1_1:+3195493 | Msa0001500:CDS |
| ATGCAATCGGGAGGCTGAGT+AGG | 0.546108 | 1_1:-3190883 | None:intergenic |
| CTTGGGACCCGAATATGAAA+AGG | 0.546232 | 1_1:+3195340 | Msa0001500:CDS |
| TTAAATCCTGTGATAGACTT+GGG | 0.546969 | 1_1:+3195323 | Msa0001500:CDS |
| ATTGACAAAGGCGGTGTGGA+CGG | 0.548471 | 1_1:-3190210 | None:intergenic |
| TTTAAATCCTGTGATAGACT+TGG | 0.550417 | 1_1:+3195322 | Msa0001500:CDS |
| AACTTCTTGACGATCATCTG+AGG | 0.551175 | 1_1:+3191127 | Msa0001500:CDS |
| AAATCCATTCCAAGTATCGT+GGG | 0.551935 | 1_1:+3195469 | Msa0001500:CDS |
| GATTTCATCAAAGAGAGGAT+TGG | 0.553663 | 1_1:-3190728 | None:intergenic |
| TAGACCCTCAACTCCAAGTA+CGG | 0.557315 | 1_1:+3191782 | Msa0001500:intron |
| GCTTTCATGTAGATCTGCAA+TGG | 0.567678 | 1_1:+3191506 | Msa0001500:intron |
| CAAGCTGAAATAAGAGGGAG+AGG | 0.571066 | 1_1:-3190244 | None:intergenic |
| AAATCTGATGTTGCATCCAA+GGG | 0.571120 | 1_1:-3195133 | None:intergenic |
| ACAACAAGCTGCCAAGGAGA+AGG | 0.571501 | 1_1:+3191152 | Msa0001500:CDS |
| TTAAGATCACATTAGACGAA+TGG | 0.572268 | 1_1:-3193478 | None:intergenic |
| GGCGGCGTGATCAGAGAAAG+AGG | 0.573818 | 1_1:-3190179 | None:intergenic |
| AAGGGTGATATAGCATCGTA+GGG | 0.575204 | 1_1:-3191216 | None:intergenic |
| CAACCCCACGATACTTGGAA+TGG | 0.575731 | 1_1:-3195473 | None:intergenic |
| GAGAGGCGACGTGTGGTTTG+GGG | 0.576021 | 1_1:+3195510 | Msa0001500:CDS |
| GAATTGTACCTTTGAGATTG+GGG | 0.576929 | 1_1:-3194532 | None:intergenic |
| GAGGGAACAACAAGCTGCCA+AGG | 0.577303 | 1_1:+3191146 | Msa0001500:CDS |
| TGGTGTACTACTACCTTGAG+GGG | 0.580656 | 1_1:-3191241 | None:intergenic |
| GTAAGTATTCTTTGGAACAG+AGG | 0.580948 | 1_1:-3190359 | None:intergenic |
| TCGGGTCCCAAGTCTATCAC+AGG | 0.582833 | 1_1:-3195329 | None:intergenic |
| ATCAGATGGACATAGCAGTA+AGG | 0.585945 | 1_1:+3192119 | Msa0001500:CDS |
| TCAAAGATTTCATCAAAGAG+AGG | 0.587278 | 1_1:-3190733 | None:intergenic |
| AACAAAACGAGATTCGGGTA+TGG | 0.588682 | 1_1:-3195110 | None:intergenic |
| TGATTGCCATTCTGTTGCGA+AGG | 0.589249 | 1_1:-3190612 | None:intergenic |
| CAAATCCATTCCAAGTATCG+TGG | 0.589695 | 1_1:+3195468 | Msa0001500:CDS |
| ACGCCAGAGAGAATTGGAAG+AGG | 0.589838 | 1_1:-3190788 | None:intergenic |
| GATCTATACACTTCTAGAGA+AGG | 0.590819 | 1_1:+3195266 | Msa0001500:CDS |
| TCTCTTTACTGGGAACCGAA+AGG | 0.591193 | 1_1:+3199265 | Msa0001500:three_prime_UTR |
| TAAAGAGAAAAGCTAACTGA+TGG | 0.593367 | 1_1:-3199250 | None:intergenic |
| CTGTACAACGAGTTGGAGCA+CGG | 0.594044 | 1_1:+3199470 | Msa0001500:three_prime_UTR |
| AGCGACCATTATGACGAGCA+AGG | 0.595760 | 1_1:-3190690 | None:intergenic |
| ACTAATGATAGGTGGAACCC+TGG | 0.596499 | 1_1:+3192906 | Msa0001500:CDS |
| TGAATGGTTCACCAATGTTG+AGG | 0.596690 | 1_1:+3199157 | Msa0001500:exon |
| AAAACCCATATTTGTTCCGG+AGG | 0.599710 | 1_1:-3191392 | None:intergenic |
| AGCTGAAATAAGAGGGAGAG+GGG | 0.600257 | 1_1:-3190242 | None:intergenic |
| ATCACATTAGACGAATGGCT+TGG | 0.601415 | 1_1:-3193473 | None:intergenic |
| TTACGGCCTTCGCAACAGAA+TGG | 0.602114 | 1_1:+3190606 | Msa0001500:CDS |
| AGCTTTGTAACTGTATTGCA+CGG | 0.602625 | 1_1:-3199225 | None:intergenic |
| AAGCTGAAATAAGAGGGAGA+GGG | 0.602826 | 1_1:-3190243 | None:intergenic |
| GGGGACGCTGCGATTGACAA+AGG | 0.602848 | 1_1:-3190222 | None:intergenic |
| TTGAAATTGGAAATTCCAGA+TGG | 0.603296 | 1_1:+3196868 | Msa0001500:CDS |
| AAACAAATACCCCTCAACAT+TGG | 0.607929 | 1_1:-3199168 | None:intergenic |
| AAATGCTATTGATTATTGCA+TGG | 0.611246 | 1_1:+3193339 | Msa0001500:CDS |
| TTCCGTTCACTAATGATAGG+TGG | 0.611432 | 1_1:+3192898 | Msa0001500:CDS |
| GCGACCATTATGACGAGCAA+GGG | 0.613460 | 1_1:-3190689 | None:intergenic |
| CGACGCAAGCTGAAATAAGA+GGG | 0.618140 | 1_1:-3190249 | None:intergenic |
| CTGTGACAATAATAAATCCA+GGG | 0.621297 | 1_1:-3192923 | None:intergenic |
| CTTAGCACAAATGCACACAT+TGG | 0.623840 | 1_1:+3190547 | Msa0001500:CDS |
| AATTGTACCTTTGAGATTGG+GGG | 0.632312 | 1_1:-3194531 | None:intergenic |
| CAAGTCTTCTGTTATCGATG+AGG | 0.634448 | 1_1:+3190927 | Msa0001500:CDS |
| GACAAAGGCGGTGTGGACGG+AGG | 0.637372 | 1_1:-3190207 | None:intergenic |
| ACTTCTTGACGATCATCTGA+GGG | 0.639356 | 1_1:+3191128 | Msa0001500:CDS |
| TATGATCAAACTCTTCTACA+AGG | 0.640197 | 1_1:+3194631 | Msa0001500:CDS |
| TATCACAGGATTTAAAGCGT+CGG | 0.642268 | 1_1:-3195315 | None:intergenic |
| TTCCACCTATCATTAGTGAA+CGG | 0.643911 | 1_1:-3192900 | None:intergenic |
| CCAGAGCTAACATTATCAGA+TGG | 0.645741 | 1_1:+3192105 | Msa0001500:CDS |
| AGATGGACATAGCAGTAAGG+AGG | 0.647768 | 1_1:+3192122 | Msa0001500:CDS |
| TCTGCAATGGATATTTGTGA+CGG | 0.651282 | 1_1:+3191519 | Msa0001500:CDS |
| CATGACACCATAATATCCAA+CGG | 0.656755 | 1_1:+3190090 | Msa0001500:five_prime_UTR |
| AAGATAGACAAATTGAACAG+AGG | 0.659788 | 1_1:-3191043 | None:intergenic |
| TGATTGTGAGAGGCGACGTG+TGG | 0.661366 | 1_1:+3195503 | Msa0001500:CDS |
| GATCGTACTAACAACGACGA+TGG | 0.663141 | 1_1:-3190320 | None:intergenic |
| GTGTGGACGGAGGTTGACGG+CGG | 0.665065 | 1_1:-3190197 | None:intergenic |
| TGCTATTGATTATTGCATGG+AGG | 0.668962 | 1_1:+3193342 | Msa0001500:CDS |
| GCCAGAGAGAATTGGAAGAG+GGG | 0.678738 | 1_1:-3190786 | None:intergenic |
| AATCCATTCCAAGTATCGTG+GGG | 0.679086 | 1_1:+3195470 | Msa0001500:CDS |
| TGCGATTGACAAAGGCGGTG+TGG | 0.679672 | 1_1:-3190214 | None:intergenic |
| AATGGTTCACCAATGTTGAG+GGG | 0.680466 | 1_1:+3199159 | Msa0001500:exon |
| TGTGATGAAGTGCGACAATG+TGG | 0.682299 | 1_1:+3193162 | Msa0001500:CDS |
| GCTGAAATAAGAGGGAGAGG+GGG | 0.689005 | 1_1:-3190241 | None:intergenic |
| GTAATCTTTGAAATGATGAG+TGG | 0.693605 | 1_1:-3190581 | None:intergenic |
| ATGCGGCTGAAAGTATGGAG+AGG | 0.695845 | 1_1:-3190997 | None:intergenic |
| ACAATGACGATGCAATCGGG+AGG | 0.701583 | 1_1:-3190892 | None:intergenic |
| GATAGACAAATTGAACAGAG+GGG | 0.719867 | 1_1:-3191041 | None:intergenic |
| GACGCTGCGATTGACAAAGG+CGG | 0.726332 | 1_1:-3190219 | None:intergenic |
| GTGATGAAGTGCGACAATGT+GGG | 0.730135 | 1_1:+3193163 | Msa0001500:CDS |
| TGCAGGCATACATTTGACGA+TGG | 0.733353 | 1_1:+3192868 | Msa0001500:intron |
| GGTGTACTACTACCTTGAGG+GGG | 0.743686 | 1_1:-3191240 | None:intergenic |
| CAGGAATGGGATAAGCAATG+CGG | 0.754863 | 1_1:-3191014 | None:intergenic |
| AGGGTGATATAGCATCGTAG+GGG | 0.760959 | 1_1:-3191215 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATTATTGTAAATAGAAA+TGG | + | chr1_1:3193856-3193875 | Msa0001500:intron | 10.0% |
| !! | AAAAATGTAATACAAATATA+TGG | - | chr1_1:3194223-3194242 | None:intergenic | 10.0% |
| !! | TATATATAATTCATTTGAAA+GGG | - | chr1_1:3195411-3195430 | None:intergenic | 10.0% |
| !! | ATATATATAATTCATTTGAA+AGG | - | chr1_1:3195412-3195431 | None:intergenic | 10.0% |
| !! | TTATTTATTAATAAAACTCT+GGG | + | chr1_1:3198615-3198634 | Msa0001500:intron | 10.0% |
| !! | TAATACAATCAAATCAAATA+TGG | - | chr1_1:3191892-3191911 | None:intergenic | 15.0% |
| !!! | TAATATTTTGCTTTAAGTTA+TGG | - | chr1_1:3192624-3192643 | None:intergenic | 15.0% |
| !! | CTAAAATATTGTTTATTCAA+TGG | + | chr1_1:3193230-3193249 | Msa0001500:intron | 15.0% |
| !! | CTATTTACAATAATTTACAT+AGG | - | chr1_1:3193853-3193872 | None:intergenic | 15.0% |
| !!! | CTTAAATTTGTAATTTTCAT+TGG | + | chr1_1:3193896-3193915 | Msa0001500:intron | 15.0% |
| !!! | CTTAAATTTGTAATTTTCAT+TGG | + | chr1_1:3193896-3193915 | Msa0001500:intron | 15.0% |
| !! | TTATTGAAAATGAATTGAAA+GGG | + | chr1_1:3194586-3194605 | Msa0001500:intron | 15.0% |
| !!! | ATTAACTAGTCTTATATTTA+TGG | - | chr1_1:3194807-3194826 | None:intergenic | 15.0% |
| !!! | AACTATATTTTCGTATAAAT+GGG | + | chr1_1:3196388-3196407 | Msa0001500:intron | 15.0% |
| !!! | TTATATTCTTGTTTGTTTAT+TGG | + | chr1_1:3196975-3196994 | Msa0001500:intron | 15.0% |
| !!! | TATATTCTTGTTTGTTTATT+GGG | + | chr1_1:3196976-3196995 | Msa0001500:intron | 15.0% |
| !! | ATATATATATATCAAATGAG+AGG | + | chr1_1:3198294-3198313 | Msa0001500:intron | 15.0% |
| !! | CTTATTTATTAATAAAACTC+TGG | + | chr1_1:3198614-3198633 | Msa0001500:intron | 15.0% |
| !! | TTAAAACATACAACTAAATT+AGG | + | chr1_1:3198819-3198838 | Msa0001500:intron | 15.0% |
| !!! | TTTTAGCTTTTAGATAAAAA+AGG | + | chr1_1:3199371-3199390 | Msa0001500:three_prime_UTR | 15.0% |
| !!! | ATTTTTTCATCCTATTTAAT+TGG | + | chr1_1:3199500-3199519 | Msa0001500:three_prime_UTR | 15.0% |
| !! | TTATACTTACATATCAGTTA+TGG | + | chr1_1:3191588-3191607 | Msa0001500:intron | 20.0% |
| !!! | TTGTAAAAATATTTTGCAAC+AGG | - | chr1_1:3191641-3191660 | None:intergenic | 20.0% |
| !! | AAAACTAAAAAATCAGTCAA+TGG | - | chr1_1:3191735-3191754 | None:intergenic | 20.0% |
| !!! | TTTGCATTTGTTCTATATTT+TGG | + | chr1_1:3192011-3192030 | Msa0001500:intron | 20.0% |
| !!! | TTGTTCTATATTTTGGATTT+TGG | + | chr1_1:3192018-3192037 | Msa0001500:intron | 20.0% |
| !! | AATACATCATAATCTAAGTA+GGG | + | chr1_1:3192075-3192094 | Msa0001500:intron | 20.0% |
| !! | CTAAATGTTTACTATTACTA+GGG | + | chr1_1:3192240-3192259 | Msa0001500:intron | 20.0% |
| !!! | AGTTTCTCATTTTATTTTCT+AGG | + | chr1_1:3193123-3193142 | Msa0001500:intron | 20.0% |
| !!! | GTTTCTCATTTTATTTTCTA+GGG | + | chr1_1:3193124-3193143 | Msa0001500:intron | 20.0% |
| !! | ATTATGATAAGACTATAAGA+AGG | - | chr1_1:3193210-3193229 | None:intergenic | 20.0% |
| !! | CTATACAAAACTTATGAAAT+AGG | - | chr1_1:3193792-3193811 | None:intergenic | 20.0% |
| !!! | CTATTTCATAAGTTTTGTAT+AGG | + | chr1_1:3193790-3193809 | Msa0001500:intron | 20.0% |
| !! | AATAATTTACATAGGAAACA+GGG | - | chr1_1:3193845-3193864 | None:intergenic | 20.0% |
| !! | CTTATTGAAAATGAATTGAA+AGG | + | chr1_1:3194585-3194604 | Msa0001500:intron | 20.0% |
| !!! | ATTTTTCACCTTTTCATATT+CGG | - | chr1_1:3195351-3195370 | None:intergenic | 20.0% |
| !! | ATATTCAAAAAAGAACATAC+AGG | - | chr1_1:3195697-3195716 | None:intergenic | 20.0% |
| !!! | ATGTTCTTTTTTGAATATCA+TGG | + | chr1_1:3195699-3195718 | Msa0001500:intron | 20.0% |
| !!! | TTTTCATTTCACAAATACAA+AGG | - | chr1_1:3195755-3195774 | None:intergenic | 20.0% |
| !! | ATTTGTGAAATGAAAAGATA+TGG | + | chr1_1:3195759-3195778 | Msa0001500:intron | 20.0% |
| !! | GATAAAAAAAAACATCAAAG+TGG | + | chr1_1:3195954-3195973 | Msa0001500:intron | 20.0% |
| !!! | ACGAAAATATAGTTGAATTT+TGG | - | chr1_1:3196382-3196401 | None:intergenic | 20.0% |
| !!! | CAACTATATTTTCGTATAAA+TGG | + | chr1_1:3196387-3196406 | Msa0001500:intron | 20.0% |
| !!! | ACTATATTTTCGTATAAATG+GGG | + | chr1_1:3196389-3196408 | Msa0001500:intron | 20.0% |
| !! | ATAGTCATAAATACTGTTTA+GGG | - | chr1_1:3196532-3196551 | None:intergenic | 20.0% |
| !! | GAATGCAGTAAATTATAATT+AGG | - | chr1_1:3196667-3196686 | None:intergenic | 20.0% |
| !! | CAAAAATAAATACAATCCAT+AGG | - | chr1_1:3196790-3196809 | None:intergenic | 20.0% |
| !!! | ACTTATATTGATTTTATCAG+AGG | + | chr1_1:3197093-3197112 | Msa0001500:intron | 20.0% |
| !!! | CTTATATTGATTTTATCAGA+GGG | + | chr1_1:3197094-3197113 | Msa0001500:intron | 20.0% |
| !! | TCAAATGTTTAATATGTTCT+TGG | - | chr1_1:3197516-3197535 | None:intergenic | 20.0% |
| !!! | GTATGTTTTAAATAGAGTAA+GGG | - | chr1_1:3198810-3198829 | None:intergenic | 20.0% |
| !!! | TGTATGTTTTAAATAGAGTA+AGG | - | chr1_1:3198811-3198830 | None:intergenic | 20.0% |
| !! | ATAAATGCTGGAAAATTAAA+AGG | - | chr1_1:3199002-3199021 | None:intergenic | 20.0% |
| !!! | TTTTCTCAGTTTTTTTCTTT+TGG | + | chr1_1:3199069-3199088 | Msa0001500:intron | 20.0% |
| !!! | AAGAAACAAATAACAAGTTT+TGG | + | chr1_1:3199291-3199310 | Msa0001500:three_prime_UTR | 20.0% |
| !! | TATAATACCTCCAATTAAAT+AGG | - | chr1_1:3199513-3199532 | None:intergenic | 20.0% |
| !!! | TTAATTGGAGGTATTATATT+CGG | + | chr1_1:3199515-3199534 | Msa0001500:three_prime_UTR | 20.0% |
| !!! | GTTTTTTCAAAGACAAACAA+AGG | - | chr1_1:3190426-3190445 | None:intergenic | 25.0% |
| ! | CAACTGTAAAACAAACAAAA+TGG | - | chr1_1:3190465-3190484 | None:intergenic | 25.0% |
| ! | CATTTCAAAGATTACACTTA+CGG | + | chr1_1:3190589-3190608 | Msa0001500:CDS | 25.0% |
| !! | CATACAAATCAAAGTCTTAT+CGG | - | chr1_1:3190644-3190663 | None:intergenic | 25.0% |
| !!! | TTCTTAGTTTGTTCAATATC+TGG | - | chr1_1:3191334-3191353 | None:intergenic | 25.0% |
| !! | TGAACAAACTAAGAATCTTT+TGG | + | chr1_1:3191339-3191358 | Msa0001500:CDS | 25.0% |
| ! | AGACATAAAATAAGATATCG+AGG | - | chr1_1:3191438-3191457 | None:intergenic | 25.0% |
| ! | TCTTTGTTAAAAATCAGCAA+TGG | - | chr1_1:3191818-3191837 | None:intergenic | 25.0% |
| ! | ATCAAATATGGAAATCGAAA+TGG | - | chr1_1:3191880-3191899 | None:intergenic | 25.0% |
| ! | AAACACTTCAATAATAGACA+AGG | - | chr1_1:3191919-3191938 | None:intergenic | 25.0% |
| !! | AAATACTTTTCCAAAACCTA+TGG | - | chr1_1:3191956-3191975 | None:intergenic | 25.0% |
| !!! | ATAGGTTTTGGAAAAGTATT+TGG | + | chr1_1:3191955-3191974 | Msa0001500:intron | 25.0% |
| !! | TAGATTATGATGTATTGATC+AGG | - | chr1_1:3192071-3192090 | None:intergenic | 25.0% |
| ! | CAATACATCATAATCTAAGT+AGG | + | chr1_1:3192074-3192093 | Msa0001500:intron | 25.0% |
| ! | GCTAAATGTTTACTATTACT+AGG | + | chr1_1:3192239-3192258 | Msa0001500:intron | 25.0% |
| ! | ATATTACTACTACCTTCATA+TGG | + | chr1_1:3192284-3192303 | Msa0001500:intron | 25.0% |
| !!! | CTAGATTAACAATTTTGAAG+CGG | - | chr1_1:3192480-3192499 | None:intergenic | 25.0% |
| ! | AGAAGATAACTATTGTTTAC+TGG | + | chr1_1:3192520-3192539 | Msa0001500:intron | 25.0% |
| ! | AGTTATGGTAAAAAAAACTC+TGG | - | chr1_1:3192609-3192628 | None:intergenic | 25.0% |
| ! | ATGTCAAAGGAATAAGTATT+TGG | + | chr1_1:3192675-3192694 | Msa0001500:intron | 25.0% |
| ! | TGTAAGAAATTTGCAAATCA+TGG | - | chr1_1:3192803-3192822 | None:intergenic | 25.0% |
| ! | TGCACATGTATATAATTTGA+AGG | - | chr1_1:3192852-3192871 | None:intergenic | 25.0% |
| ! | TTCAAATTATATACATGTGC+AGG | + | chr1_1:3192851-3192870 | Msa0001500:intron | 25.0% |
| ! | AGAAAAATGAGAGATATGAA+GGG | - | chr1_1:3192974-3192993 | None:intergenic | 25.0% |
| !!! | TCATTTTATTTTCTAGGGAA+AGG | + | chr1_1:3193129-3193148 | Msa0001500:intron | 25.0% |
| ! | AATATTTAAGTCTCAATCCA+TGG | - | chr1_1:3193264-3193283 | None:intergenic | 25.0% |
| ! | ATATCTACATAATGTAGTCA+AGG | - | chr1_1:3193301-3193320 | None:intergenic | 25.0% |
| !! | AAATGCTATTGATTATTGCA+TGG | + | chr1_1:3193339-3193358 | Msa0001500:CDS | 25.0% |
| ! | AAGAAGAAAGAAAATGAATC+AGG | - | chr1_1:3193436-3193455 | None:intergenic | 25.0% |
| !!! | TCTTTCTTCTTTCTTTTTTC+AGG | + | chr1_1:3193445-3193464 | Msa0001500:intron | 25.0% |
| !! | CTTAACTCCAATGAATTTTA+AGG | + | chr1_1:3193496-3193515 | Msa0001500:CDS | 25.0% |
| ! | AAATGCACCTTAAAATTCAT+TGG | - | chr1_1:3193506-3193525 | None:intergenic | 25.0% |
| !!! | TGCTAAATTAATTAGTCTTG+AGG | + | chr1_1:3193584-3193603 | Msa0001500:intron | 25.0% |
| ! | AGAAATTCAAACATATGAAC+TGG | + | chr1_1:3193663-3193682 | Msa0001500:intron | 25.0% |
| ! | AACAGACATCTTTAAACTTA+CGG | + | chr1_1:3193704-3193723 | Msa0001500:intron | 25.0% |
| ! | ATAATTTACATAGGAAACAG+GGG | - | chr1_1:3193844-3193863 | None:intergenic | 25.0% |
| ! | CAATAATTTACATAGGAAAC+AGG | - | chr1_1:3193846-3193865 | None:intergenic | 25.0% |
| ! | ATTCTTGTCAAATGCTTATT+AGG | + | chr1_1:3194065-3194084 | Msa0001500:intron | 25.0% |
| ! | TCAAATGCTTATTAGGTAAT+GGG | + | chr1_1:3194072-3194091 | Msa0001500:intron | 25.0% |
| ! | AAAGACTTACATCTTTATCT+TGG | - | chr1_1:3194184-3194203 | None:intergenic | 25.0% |
| !! | AATCTAGTAATTTTCTCGTT+TGG | + | chr1_1:3194435-3194454 | Msa0001500:intron | 25.0% |
| !! | GTTTTTCTTTTGCATAAAAC+AGG | + | chr1_1:3194740-3194759 | Msa0001500:intron | 25.0% |
| !! | TTTTTCACCTTTTCATATTC+GGG | - | chr1_1:3195350-3195369 | None:intergenic | 25.0% |
| ! | TTTGAAAGGGAATAAAAACA+AGG | - | chr1_1:3195398-3195417 | None:intergenic | 25.0% |
| ! | TTTGTAGAGAAATTTAAGCA+CGG | + | chr1_1:3195913-3195932 | Msa0001500:intron | 25.0% |
| ! | ACGGTTAAAAATTGAGAAAT+AGG | + | chr1_1:3195932-3195951 | Msa0001500:intron | 25.0% |
| !! | TATCAGAACTGATTCAAATA+TGG | + | chr1_1:3196020-3196039 | Msa0001500:intron | 25.0% |
| !! | ATCAGAACTGATTCAAATAT+GGG | + | chr1_1:3196021-3196040 | Msa0001500:intron | 25.0% |
| ! | GATAGTCATAAATACTGTTT+AGG | - | chr1_1:3196533-3196552 | None:intergenic | 25.0% |
| ! | AAGAAAAGTTGAAGGAAATT+TGG | - | chr1_1:3196567-3196586 | None:intergenic | 25.0% |
| !!! | TGTTTTGTCTTTTGAAAACA+TGG | + | chr1_1:3197068-3197087 | Msa0001500:intron | 25.0% |
| !!! | GTTTTGTCTTTTGAAAACAT+GGG | + | chr1_1:3197069-3197088 | Msa0001500:intron | 25.0% |
| ! | ATCGTAATGAATTCAGAATT+CGG | - | chr1_1:3197258-3197277 | None:intergenic | 25.0% |
| !! | ATTCACAAATCAACAGTTTT+AGG | - | chr1_1:3197321-3197340 | None:intergenic | 25.0% |
| ! | CAGTTTCAAAATAGTTCAAA+AGG | - | chr1_1:3197376-3197395 | None:intergenic | 25.0% |
| !!! | CTTTTGAACTATTTTGAAAC+TGG | + | chr1_1:3197374-3197393 | Msa0001500:intron | 25.0% |
| ! | TGACTTGAATTTAATAAGAC+AGG | - | chr1_1:3197606-3197625 | None:intergenic | 25.0% |
| !! | TCCTTTAAAGAAAAAAGCTT+TGG | + | chr1_1:3197763-3197782 | Msa0001500:intron | 25.0% |
| !!! | TCCAAAGCTTTTTTCTTTAA+AGG | - | chr1_1:3197767-3197786 | None:intergenic | 25.0% |
| !!! | TAAAGAAAAAAGCTTTGGAA+TGG | + | chr1_1:3197768-3197787 | Msa0001500:intron | 25.0% |
| ! | AAACATATTCCATCCAAATT+AGG | + | chr1_1:3197877-3197896 | Msa0001500:intron | 25.0% |
| ! | GAAAAAATTCCTAATTTGGA+TGG | - | chr1_1:3197889-3197908 | None:intergenic | 25.0% |
| ! | GTGAGAAAAAATTCCTAATT+TGG | - | chr1_1:3197893-3197912 | None:intergenic | 25.0% |
| ! | GAAAATACAGATGAAATTGA+AGG | + | chr1_1:3198677-3198696 | Msa0001500:intron | 25.0% |
| ! | ACATACAACTAAATTAGGAT+TGG | + | chr1_1:3198824-3198843 | Msa0001500:intron | 25.0% |
| ! | TTCATTTAATGAATGTTCGT+AGG | - | chr1_1:3198897-3198916 | None:intergenic | 25.0% |
| !! | AAAAAACTGAGAAAAAGTGT+TGG | - | chr1_1:3199064-3199083 | None:intergenic | 25.0% |
| !!! | GGTATTTGTTTCTAATGAAT+AGG | + | chr1_1:3199180-3199199 | Msa0001500:three_prime_UTR | 25.0% |
| !! | TATTTGTTTCTTCAACCTTT+CGG | - | chr1_1:3199283-3199302 | None:intergenic | 25.0% |
| ! | CAATTATTTCATCACTGTTA+TGG | - | chr1_1:3199322-3199341 | None:intergenic | 25.0% |
| !! | TTTTCATCCTATTTAATTGG+AGG | + | chr1_1:3199503-3199522 | Msa0001500:three_prime_UTR | 25.0% |
| TAATGTAAAATCTCAACCGT+TGG | - | chr1_1:3190109-3190128 | None:intergenic | 30.0% | |
| CCAGTATAGTAAGTATTCTT+TGG | - | chr1_1:3190370-3190389 | None:intergenic | 30.0% | |
| CCAAAGAATACTTACTATAC+TGG | + | chr1_1:3190367-3190386 | Msa0001500:five_prime_UTR | 30.0% | |
| !! | AAATGGATTGTTTGAGCTTA+GGG | - | chr1_1:3190448-3190467 | None:intergenic | 30.0% |
| !! | AAAATGGATTGTTTGAGCTT+AGG | - | chr1_1:3190449-3190468 | None:intergenic | 30.0% |
| !! | GTAATCTTTGAAATGATGAG+TGG | - | chr1_1:3190584-3190603 | None:intergenic | 30.0% |
| TCAAAGATTTCATCAAAGAG+AGG | - | chr1_1:3190736-3190755 | None:intergenic | 30.0% | |
| AGATAGACAAATTGAACAGA+GGG | - | chr1_1:3191045-3191064 | None:intergenic | 30.0% | |
| AAGATAGACAAATTGAACAG+AGG | - | chr1_1:3191046-3191065 | None:intergenic | 30.0% | |
| TTGAAAACCCATATTTGTTC+CGG | - | chr1_1:3191398-3191417 | None:intergenic | 30.0% | |
| TCGCATTATCATTTATTCCT+TGG | + | chr1_1:3191614-3191633 | Msa0001500:intron | 30.0% | |
| CGCATTATCATTTATTCCTT+GGG | + | chr1_1:3191615-3191634 | Msa0001500:intron | 30.0% | |
| GGCAACTAAGTATATATTGA+TGG | - | chr1_1:3191714-3191733 | None:intergenic | 30.0% | |
| CACTCATGATAGTACTTTAA+AGG | + | chr1_1:3191841-3191860 | Msa0001500:CDS | 30.0% | |
| ACTTCAATAATAGACAAGGT+GGG | - | chr1_1:3191915-3191934 | None:intergenic | 30.0% | |
| TTAACTTCATCATCTTCCAT+AGG | + | chr1_1:3191937-3191956 | Msa0001500:intron | 30.0% | |
| TCATAATCTAAGTAGGGTAA+AGG | + | chr1_1:3192081-3192100 | Msa0001500:intron | 30.0% | |
| CATGGTTTCGAACTAATTAA+AGG | - | chr1_1:3192442-3192461 | None:intergenic | 30.0% | |
| CTTTGACATCTCAAATTTAC+GGG | - | chr1_1:3192664-3192683 | None:intergenic | 30.0% | |
| CCTTTGACATCTCAAATTTA+CGG | - | chr1_1:3192665-3192684 | None:intergenic | 30.0% | |
| ACAAAATTTACCATGCCTAA+CGG | + | chr1_1:3192708-3192727 | Msa0001500:intron | 30.0% | |
| ATAATGATAGTTTGACCGTT+AGG | - | chr1_1:3192726-3192745 | None:intergenic | 30.0% | |
| ATATTCCGTTCACTAATGAT+AGG | + | chr1_1:3192895-3192914 | Msa0001500:CDS | 30.0% | |
| CTGTGACAATAATAAATCCA+GGG | - | chr1_1:3192926-3192945 | None:intergenic | 30.0% | |
| GAGAAAAATGAGAGATATGA+AGG | - | chr1_1:3192975-3192994 | None:intergenic | 30.0% | |
| AAGACTATAAGAAGGATACT+TGG | - | chr1_1:3193202-3193221 | None:intergenic | 30.0% | |
| !!! | CTGCTACTTCACTTTTTTTA+AGG | + | chr1_1:3193399-3193418 | Msa0001500:intron | 30.0% |
| AGAAAATGAATCAGGAAACA+CGG | - | chr1_1:3193428-3193447 | None:intergenic | 30.0% | |
| TTAAGATCACATTAGACGAA+TGG | - | chr1_1:3193481-3193500 | None:intergenic | 30.0% | |
| ACAGACATCTTTAAACTTAC+GGG | + | chr1_1:3193705-3193724 | Msa0001500:intron | 30.0% | |
| TAGGAAACAAATTGAGAACA+AGG | - | chr1_1:3193773-3193792 | None:intergenic | 30.0% | |
| TAATTTACATAGGAAACAGG+GGG | - | chr1_1:3193843-3193862 | None:intergenic | 30.0% | |
| TTTGATCTGTGCTTAACATT+AGG | - | chr1_1:3193926-3193945 | None:intergenic | 30.0% | |
| ! | AATTTTCATTGGAGATCCTA+AGG | + | chr1_1:3193907-3193926 | Msa0001500:intron | 30.0% |
| AGCATTTGACAAGAATTAGT+AGG | - | chr1_1:3194061-3194080 | None:intergenic | 30.0% | |
| GTCAAATGCTTATTAGGTAA+TGG | + | chr1_1:3194071-3194090 | Msa0001500:intron | 30.0% | |
| CAAATGCTTATTAGGTAATG+GGG | + | chr1_1:3194073-3194092 | Msa0001500:intron | 30.0% | |
| TTTGTAATCTATGCAGCTTA+AGG | + | chr1_1:3194145-3194164 | Msa0001500:intron | 30.0% | |
| TCAACTACAATAAGTCAATC+AGG | - | chr1_1:3194334-3194353 | None:intergenic | 30.0% | |
| ! | GATTGACTTATTGTAGTTGA+AGG | + | chr1_1:3194334-3194353 | Msa0001500:intron | 30.0% |
| ! | TGGTTTTCGTTCATTTTCTT+GGG | + | chr1_1:3194401-3194420 | Msa0001500:intron | 30.0% |
| TGAGTTTAAGAACCATTAAG+AGG | + | chr1_1:3194475-3194494 | Msa0001500:CDS | 30.0% | |
| AGAATGCTGGACTAATAATA+AGG | - | chr1_1:3194557-3194576 | None:intergenic | 30.0% | |
| TATGATCAAACTCTTCTACA+AGG | + | chr1_1:3194631-3194650 | Msa0001500:CDS | 30.0% | |
| ! | TAAGACTAGTTAATCTGCAA+TGG | + | chr1_1:3194813-3194832 | Msa0001500:intron | 30.0% |
| ! | CTGTAAATTTTTATCACCAC+CGG | + | chr1_1:3194873-3194892 | Msa0001500:intron | 30.0% |
| AGTAATGTCACAAATCACAA+TGG | + | chr1_1:3194932-3194951 | Msa0001500:intron | 30.0% | |
| TTTAAATCCTGTGATAGACT+TGG | + | chr1_1:3195322-3195341 | Msa0001500:CDS | 30.0% | |
| TTAAATCCTGTGATAGACTT+GGG | + | chr1_1:3195323-3195342 | Msa0001500:CDS | 30.0% | |
| TATTACCTTCAATTGTCTAG+AGG | + | chr1_1:3195613-3195632 | Msa0001500:intron | 30.0% | |
| ATTACCTTCAATTGTCTAGA+GGG | + | chr1_1:3195614-3195633 | Msa0001500:intron | 30.0% | |
| TTGAAACACTAAGTGAAGTA+TGG | - | chr1_1:3195648-3195667 | None:intergenic | 30.0% | |
| TCAAATTTCTTAGAACCACT+TGG | + | chr1_1:3195664-3195683 | Msa0001500:intron | 30.0% | |
| CAAATTTCTTAGAACCACTT+GGG | + | chr1_1:3195665-3195684 | Msa0001500:intron | 30.0% | |
| AAATTTCTTAGAACCACTTG+GGG | + | chr1_1:3195666-3195685 | Msa0001500:intron | 30.0% | |
| ! | TCAGAACTGATTCAAATATG+GGG | + | chr1_1:3196022-3196041 | Msa0001500:intron | 30.0% |
| AAATTCCAGTTTATCCTACA+AGG | - | chr1_1:3196166-3196185 | None:intergenic | 30.0% | |
| ! | ATTGTTCTATAGCAGTTTTG+AGG | + | chr1_1:3196249-3196268 | Msa0001500:intron | 30.0% |
| !! | TATAGTTGAATTTTGGTGCA+AGG | - | chr1_1:3196375-3196394 | None:intergenic | 30.0% |
| ! | ATAAATACTGTTTAGGGTCT+TGG | - | chr1_1:3196526-3196545 | None:intergenic | 30.0% |
| TGAACAAGAAGAAAAGTTGA+AGG | - | chr1_1:3196575-3196594 | None:intergenic | 30.0% | |
| TGCTACTAAATTTACACAGT+TGG | + | chr1_1:3196725-3196744 | Msa0001500:intron | 30.0% | |
| ATTTACACAGTTGGTTATGT+AGG | + | chr1_1:3196734-3196753 | Msa0001500:intron | 30.0% | |
| TTTACACAGTTGGTTATGTA+GGG | + | chr1_1:3196735-3196754 | Msa0001500:intron | 30.0% | |
| TTGAAATTGGAAATTCCAGA+TGG | + | chr1_1:3196868-3196887 | Msa0001500:CDS | 30.0% | |
| TACAAGTCTTCTTCTTTCAA+TGG | + | chr1_1:3196951-3196970 | Msa0001500:intron | 30.0% | |
| ! | ATTCTTGTTTGTTTATTGGG+CGG | + | chr1_1:3196979-3196998 | Msa0001500:intron | 30.0% |
| !!! | AACGTTTGTTTTGTTTGAAC+TGG | + | chr1_1:3197022-3197041 | Msa0001500:intron | 30.0% |
| GTCTGGATACATAACTAAAA+GGG | - | chr1_1:3197122-3197141 | None:intergenic | 30.0% | |
| AGTCTGGATACATAACTAAA+AGG | - | chr1_1:3197123-3197142 | None:intergenic | 30.0% | |
| AATATCAAGATTATGACTCC+CGG | - | chr1_1:3197182-3197201 | None:intergenic | 30.0% | |
| TTAGGAATAACTGTAGCTTT+GGG | - | chr1_1:3197303-3197322 | None:intergenic | 30.0% | |
| TTTAGGAATAACTGTAGCTT+TGG | - | chr1_1:3197304-3197323 | None:intergenic | 30.0% | |
| TTGAATGATGTGGATCAAAT+GGG | - | chr1_1:3197435-3197454 | None:intergenic | 30.0% | |
| TTTGAATGATGTGGATCAAA+TGG | - | chr1_1:3197436-3197455 | None:intergenic | 30.0% | |
| !! | TCCAATTAAAGGAAGTATCA+GGG | - | chr1_1:3197493-3197512 | None:intergenic | 30.0% |
| TATGTTCTTGGTCCAATTAA+AGG | - | chr1_1:3197504-3197523 | None:intergenic | 30.0% | |
| ! | TTGAACCGACTTTATTTAAC+CGG | + | chr1_1:3197647-3197666 | Msa0001500:intron | 30.0% |
| !! | ATCAAGTATTGAATACCACA+AGG | + | chr1_1:3197826-3197845 | Msa0001500:intron | 30.0% |
| !! | TCAAGTATTGAATACCACAA+GGG | + | chr1_1:3197827-3197846 | Msa0001500:intron | 30.0% |
| ! | TTTTTCTCACTGATCACTTT+CGG | + | chr1_1:3197903-3197922 | Msa0001500:intron | 30.0% |
| TGTTACTGAAACTAAACAGA+GGG | + | chr1_1:3197966-3197985 | Msa0001500:intron | 30.0% | |
| ATTAAGGAATGACAATTGAG+CGG | + | chr1_1:3198026-3198045 | Msa0001500:intron | 30.0% | |
| ! | ATGGCTTGGAATAAACAAAT+GGG | - | chr1_1:3198127-3198146 | None:intergenic | 30.0% |
| TACCCTCAGATTAAAATGAA+CGG | + | chr1_1:3198350-3198369 | Msa0001500:intron | 30.0% | |
| !! | AACCGTTCATTTTAATCTGA+GGG | - | chr1_1:3198355-3198374 | None:intergenic | 30.0% |
| GATGAACATGAACGATTAAT+CGG | - | chr1_1:3198474-3198493 | None:intergenic | 30.0% | |
| !! | AATAATCCTTCCTTTTGAGT+TGG | + | chr1_1:3198638-3198657 | Msa0001500:intron | 30.0% |
| AATACAGATGAAATTGAAGG+AGG | + | chr1_1:3198680-3198699 | Msa0001500:intron | 30.0% | |
| ! | ATTTTGTACTAGTAACTGGT+TGG | - | chr1_1:3198767-3198786 | None:intergenic | 30.0% |
| !! | GGTTATTTTGTACTAGTAAC+TGG | - | chr1_1:3198771-3198790 | None:intergenic | 30.0% |
| CTATTAGGAATGTGTATGTT+AGG | - | chr1_1:3198870-3198889 | None:intergenic | 30.0% | |
| !! | CTATTAGTTAAAGCTTGTTG+GGG | - | chr1_1:3198967-3198986 | None:intergenic | 30.0% |
| ! | GCTATTAGTTAAAGCTTGTT+GGG | - | chr1_1:3198968-3198987 | None:intergenic | 30.0% |
| TGCTATTAGTTAAAGCTTGT+TGG | - | chr1_1:3198969-3198988 | None:intergenic | 30.0% | |
| !! | AAAAGTGTTGGTTAATCAAG+AGG | - | chr1_1:3199052-3199071 | None:intergenic | 30.0% |
| ATTACTTTGTGCCAATTTAC+AGG | + | chr1_1:3199105-3199124 | Msa0001500:intron | 30.0% | |
| TAAAGAGAAAAGCTAACTGA+TGG | - | chr1_1:3199253-3199272 | None:intergenic | 30.0% | |
| !!! | AGTTAGCTTTTCTCTTTACT+GGG | + | chr1_1:3199255-3199274 | Msa0001500:three_prime_UTR | 30.0% |
| CTAAAAGCTAAAAAGCTACA+AGG | - | chr1_1:3199364-3199383 | None:intergenic | 30.0% | |
| GACTTATTGTTATATACCGA+CGG | + | chr1_1:3199542-3199561 | Msa0001500:three_prime_UTR | 30.0% | |
| CATGACACCATAATATCCAA+CGG | + | chr1_1:3190090-3190109 | Msa0001500:five_prime_UTR | 35.0% | |
| ATCTCAACCGTTGGATATTA+TGG | - | chr1_1:3190100-3190119 | None:intergenic | 35.0% | |
| !!! | CGATGGATAAGTTTTGATTG+CGG | - | chr1_1:3190306-3190325 | None:intergenic | 35.0% |
| TACGATCTGTTATGCTTTGA+AGG | + | chr1_1:3190336-3190355 | Msa0001500:five_prime_UTR | 35.0% | |
| !! | GTAAGTATTCTTTGGAACAG+AGG | - | chr1_1:3190362-3190381 | None:intergenic | 35.0% |
| GATTTCATCAAAGAGAGGAT+TGG | - | chr1_1:3190731-3190750 | None:intergenic | 35.0% | |
| CTTTGAGCTTATGTCCAAAA+AGG | + | chr1_1:3190750-3190769 | Msa0001500:CDS | 35.0% | |
| GATAGACAAATTGAACAGAG+GGG | - | chr1_1:3191044-3191063 | None:intergenic | 35.0% | |
| GAGAGAAAGTAGAAAAGTTG+TGG | - | chr1_1:3191264-3191283 | None:intergenic | 35.0% | |
| TCTGCAATGGATATTTGTGA+CGG | + | chr1_1:3191519-3191538 | Msa0001500:CDS | 35.0% | |
| CTTGATCATTAACCAGATTG+AGG | + | chr1_1:3191557-3191576 | Msa0001500:CDS | 35.0% | |
| ATAAATGTCTGACCTCAATC+TGG | - | chr1_1:3191572-3191591 | None:intergenic | 35.0% | |
| TATGAGGTATATGCACAAAC+TGG | - | chr1_1:3191669-3191688 | None:intergenic | 35.0% | |
| TGAGTTGCATATGTTGTATG+AGG | - | chr1_1:3191685-3191704 | None:intergenic | 35.0% | |
| TAAAAATCAGCAATGGAACC+CGG | - | chr1_1:3191811-3191830 | None:intergenic | 35.0% | |
| CACTTCAATAATAGACAAGG+TGG | - | chr1_1:3191916-3191935 | None:intergenic | 35.0% | |
| ! | TCATCATCTTCCATAGGTTT+TGG | + | chr1_1:3191943-3191962 | Msa0001500:intron | 35.0% |
| CGGTGAATGTGAATATATCA+TGG | - | chr1_1:3192460-3192479 | None:intergenic | 35.0% | |
| ! | CCGTAAATTTGAGATGTCAA+AGG | + | chr1_1:3192662-3192681 | Msa0001500:intron | 35.0% |
| TTCCACCTATCATTAGTGAA+CGG | - | chr1_1:3192903-3192922 | None:intergenic | 35.0% | |
| CCTGTGACAATAATAAATCC+AGG | - | chr1_1:3192927-3192946 | None:intergenic | 35.0% | |
| CCTGGATTTATTATTGTCAC+AGG | + | chr1_1:3192924-3192943 | Msa0001500:CDS | 35.0% | |
| TGCTCGTATATGTGCATATT+TGG | + | chr1_1:3193068-3193087 | Msa0001500:intron | 35.0% | |
| GCTCGTATATGTGCATATTT+GGG | + | chr1_1:3193069-3193088 | Msa0001500:intron | 35.0% | |
| ! | TGCTATTGATTATTGCATGG+AGG | + | chr1_1:3193342-3193361 | Msa0001500:CDS | 35.0% |
| AATGTTCAAGACACTGAATG+AGG | - | chr1_1:3193539-3193558 | None:intergenic | 35.0% | |
| GTGTCTTGAACATTTGTTCT+AGG | + | chr1_1:3193545-3193564 | Msa0001500:intron | 35.0% | |
| TACTTGTATATACTGCCACA+GGG | - | chr1_1:3193621-3193640 | None:intergenic | 35.0% | |
| !! | TGAACTGGAAAAGTATCATG+AGG | + | chr1_1:3193678-3193697 | Msa0001500:intron | 35.0% |
| GAAATGGAAACAGATCAAAG+AGG | + | chr1_1:3193872-3193891 | Msa0001500:intron | 35.0% | |
| ATGTTAAGCACAGATCAAAG+AGG | + | chr1_1:3193927-3193946 | Msa0001500:intron | 35.0% | |
| CTCAAAATGTGCTTAACCTT+AGG | - | chr1_1:3193981-3194000 | None:intergenic | 35.0% | |
| !! | TATTAGGTAATGGGGTGATT+TGG | + | chr1_1:3194081-3194100 | Msa0001500:intron | 35.0% |
| ! | AATAAGCTCACAAGTCTTGT+TGG | - | chr1_1:3194273-3194292 | None:intergenic | 35.0% |
| !! | CTGGTTTTCGTTCATTTTCT+TGG | + | chr1_1:3194400-3194419 | Msa0001500:intron | 35.0% |
| AGTGTCAAAAAGCCTCTTAA+TGG | - | chr1_1:3194490-3194509 | None:intergenic | 35.0% | |
| !! | AATTGTACCTTTGAGATTGG+GGG | - | chr1_1:3194534-3194553 | None:intergenic | 35.0% |
| !! | GAATTGTACCTTTGAGATTG+GGG | - | chr1_1:3194535-3194554 | None:intergenic | 35.0% |
| !! | GGAATTGTACCTTTGAGATT+GGG | - | chr1_1:3194536-3194555 | None:intergenic | 35.0% |
| !! | AGGAATTGTACCTTTGAGAT+TGG | - | chr1_1:3194537-3194556 | None:intergenic | 35.0% |
| AATGAAAATACCTGTACTGC+CGG | - | chr1_1:3194670-3194689 | None:intergenic | 35.0% | |
| ACTACAGTCTCAAATTCGAA+CGG | - | chr1_1:3194770-3194789 | None:intergenic | 35.0% | |
| CGGTGGTGATAAAAATTTAC+AGG | - | chr1_1:3194875-3194894 | None:intergenic | 35.0% | |
| CACTGAAGCTTATTTCAGTT+AGG | + | chr1_1:3194905-3194924 | Msa0001500:intron | 35.0% | |
| TAGTATATTTCCTCTGCACT+AGG | - | chr1_1:3194967-3194986 | None:intergenic | 35.0% | |
| CAATCGCATTATCAAAGAAC+TGG | - | chr1_1:3195084-3195103 | None:intergenic | 35.0% | |
| !! | CAGTTCTTTGATAATGCGAT+TGG | + | chr1_1:3195082-3195101 | Msa0001500:intron | 35.0% |
| AAATCTGATGTTGCATCCAA+GGG | - | chr1_1:3195136-3195155 | None:intergenic | 35.0% | |
| TAAATCTGATGTTGCATCCA+AGG | - | chr1_1:3195137-3195156 | None:intergenic | 35.0% | |
| ! | GATCTATACACTTCTAGAGA+AGG | + | chr1_1:3195266-3195285 | Msa0001500:CDS | 35.0% |
| ! | TATCACAGGATTTAAAGCGT+CGG | - | chr1_1:3195318-3195337 | None:intergenic | 35.0% |
| AGGGAATAAAAACAAGGCAT+GGG | - | chr1_1:3195392-3195411 | None:intergenic | 35.0% | |
| AAGGGAATAAAAACAAGGCA+TGG | - | chr1_1:3195393-3195412 | None:intergenic | 35.0% | |
| ! | AAATCCATTCCAAGTATCGT+GGG | + | chr1_1:3195469-3195488 | Msa0001500:CDS | 35.0% |
| TTGGATAGTTTGATTGTGAG+AGG | + | chr1_1:3195493-3195512 | Msa0001500:CDS | 35.0% | |
| TGGGGCAAATATTACTTTGA+AGG | + | chr1_1:3195528-3195547 | Msa0001500:CDS | 35.0% | |
| ACTAAGTGAAGTATGGAGTA+TGG | - | chr1_1:3195641-3195660 | None:intergenic | 35.0% | |
| !! | CACTCTAAGGTGAAAAAAAC+GGG | - | chr1_1:3195817-3195836 | None:intergenic | 35.0% |
| !! | CCACTCTAAGGTGAAAAAAA+CGG | - | chr1_1:3195818-3195837 | None:intergenic | 35.0% |
| !!! | CGTTTTTTTCACCTTAGAGT+GGG | + | chr1_1:3195816-3195835 | Msa0001500:intron | 35.0% |
| TATGGTGTATCAGAGAAAGT+CGG | + | chr1_1:3195842-3195861 | Msa0001500:intron | 35.0% | |
| TATCAGAGAAAGTCGGAATT+AGG | + | chr1_1:3195849-3195868 | Msa0001500:intron | 35.0% | |
| TCTGATATTGCACTGCAATT+TGG | - | chr1_1:3196007-3196026 | None:intergenic | 35.0% | |
| !! | AATATGGGGATTTGTTGATG+TGG | + | chr1_1:3196036-3196055 | Msa0001500:intron | 35.0% |
| AGCGCATGAATAGTATTGTT+AGG | + | chr1_1:3196109-3196128 | Msa0001500:intron | 35.0% | |
| GCGCATGAATAGTATTGTTA+GGG | + | chr1_1:3196110-3196129 | Msa0001500:intron | 35.0% | |
| !! | TTCATCATGCAAGAGTACTT+TGG | + | chr1_1:3196307-3196326 | Msa0001500:intron | 35.0% |
| !! | TCATCATGCAAGAGTACTTT+GGG | + | chr1_1:3196308-3196327 | Msa0001500:intron | 35.0% |
| GATTATCCAGGAAAGAGATA+AGG | - | chr1_1:3196441-3196460 | None:intergenic | 35.0% | |
| AAACTGATGTATCTCTTTCC+TGG | - | chr1_1:3196463-3196482 | None:intergenic | 35.0% | |
| ! | TAAGTTTTCTGCTTTCCATG+TGG | + | chr1_1:3196603-3196622 | Msa0001500:intron | 35.0% |
| TGTCAATCTTCTATTCCACA+TGG | - | chr1_1:3196621-3196640 | None:intergenic | 35.0% | |
| ATACAATCCATAGGTCTTTC+AGG | - | chr1_1:3196781-3196800 | None:intergenic | 35.0% | |
| TGGAGTTGTGATTGAGAATA+AGG | + | chr1_1:3196888-3196907 | Msa0001500:CDS | 35.0% | |
| ACTGGTATAACAGACATCAT+TGG | + | chr1_1:3197040-3197059 | Msa0001500:intron | 35.0% | |
| !! | TATGACTGGTTTGAATGATG+TGG | - | chr1_1:3197445-3197464 | None:intergenic | 35.0% |
| !!! | GGCTTTGGAATTTTTATGAC+TGG | - | chr1_1:3197459-3197478 | None:intergenic | 35.0% |
| !! | GTCCAATTAAAGGAAGTATC+AGG | - | chr1_1:3197494-3197513 | None:intergenic | 35.0% |
| ! | TGAACCGACTTTATTTAACC+GGG | + | chr1_1:3197648-3197667 | Msa0001500:intron | 35.0% |
| TGTTCCCGGTTAAATAAAGT+CGG | - | chr1_1:3197655-3197674 | None:intergenic | 35.0% | |
| CAATTGAAAGGGAACATTGA+GGG | - | chr1_1:3197684-3197703 | None:intergenic | 35.0% | |
| AATGTTCCCTTTCAATTGCT+AGG | + | chr1_1:3197686-3197705 | Msa0001500:intron | 35.0% | |
| CTGTTACTGAAACTAAACAG+AGG | + | chr1_1:3197965-3197984 | Msa0001500:intron | 35.0% | |
| TGAACAGGACAAGGAAATTA+AGG | + | chr1_1:3198010-3198029 | Msa0001500:intron | 35.0% | |
| GAGTAAGGTTTCCAAAGTTT+GGG | - | chr1_1:3198073-3198092 | None:intergenic | 35.0% | |
| ! | CAAACTTTGGAAACCTTACT+CGG | + | chr1_1:3198072-3198091 | Msa0001500:intron | 35.0% |
| AATAAACAAATGGGGAGGAA+AGG | - | chr1_1:3198118-3198137 | None:intergenic | 35.0% | |
| ! | TGGCTTGGAATAAACAAATG+GGG | - | chr1_1:3198126-3198145 | None:intergenic | 35.0% |
| ! | GATGGCTTGGAATAAACAAA+TGG | - | chr1_1:3198128-3198147 | None:intergenic | 35.0% |
| ACAAAGGAATGGAATGTGTT+GGG | - | chr1_1:3198191-3198210 | None:intergenic | 35.0% | |
| !! | GAACCGTTCATTTTAATCTG+AGG | - | chr1_1:3198356-3198375 | None:intergenic | 35.0% |
| TAACCAACACAGAGAAGAAA+AGG | + | chr1_1:3198437-3198456 | Msa0001500:intron | 35.0% | |
| ! | TTTCCTTTTCTTCTCTGTGT+TGG | - | chr1_1:3198443-3198462 | None:intergenic | 35.0% |
| !! | TTGATGTCTTCTTTTGAGTG+TGG | - | chr1_1:3198520-3198539 | None:intergenic | 35.0% |
| CAATGCATAACCAACTCAAA+AGG | - | chr1_1:3198651-3198670 | None:intergenic | 35.0% | |
| AGATGAAATTGAAGGAGGAA+AGG | + | chr1_1:3198685-3198704 | Msa0001500:intron | 35.0% | |
| GATGAAATTGAAGGAGGAAA+GGG | + | chr1_1:3198686-3198705 | Msa0001500:intron | 35.0% | |
| ATGTTCGTAGGCATACTATT+AGG | - | chr1_1:3198885-3198904 | None:intergenic | 35.0% | |
| GCTGAAATTGTCATAAATGC+TGG | - | chr1_1:3199014-3199033 | None:intergenic | 35.0% | |
| TGCAGATATCCAAGAATGAA+TGG | + | chr1_1:3199141-3199160 | Msa0001500:exon | 35.0% | |
| ATTGGTGAACCATTCATTCT+TGG | - | chr1_1:3199153-3199172 | None:intergenic | 35.0% | |
| AAACAAATACCCCTCAACAT+TGG | - | chr1_1:3199171-3199190 | None:intergenic | 35.0% | |
| ! | AGCTTTGTAACTGTATTGCA+CGG | - | chr1_1:3199228-3199247 | None:intergenic | 35.0% |
| !!! | CAGTTAGCTTTTCTCTTTAC+TGG | + | chr1_1:3199254-3199273 | Msa0001500:three_prime_UTR | 35.0% |
| GAAGAGACTATGTAGTATCA+AGG | - | chr1_1:3199441-3199460 | None:intergenic | 35.0% | |
| TTGTTTACTGTACAACGAGT+TGG | + | chr1_1:3199463-3199482 | Msa0001500:three_prime_UTR | 35.0% | |
| !! | GTAAGATTTTGTTGTACCGT+CGG | - | chr1_1:3199561-3199580 | None:intergenic | 35.0% |
| AAGCTGAAATAAGAGGGAGA+GGG | - | chr1_1:3190246-3190265 | None:intergenic | 40.0% | |
| !!! | TGGATAAGTTTTGATTGCGG+TGG | - | chr1_1:3190303-3190322 | None:intergenic | 40.0% |
| CTTAGCACAAATGCACACAT+TGG | + | chr1_1:3190547-3190566 | Msa0001500:CDS | 40.0% | |
| GAGCTTATGTCCAAAAAGGT+TGG | + | chr1_1:3190754-3190773 | Msa0001500:CDS | 40.0% | |
| TTGCGAGATCGAAACTTCTT+GGG | - | chr1_1:3190844-3190863 | None:intergenic | 40.0% | |
| ATCGACAATGACGATGCAAT+CGG | - | chr1_1:3190899-3190918 | None:intergenic | 40.0% | |
| CAAGTCTTCTGTTATCGATG+AGG | + | chr1_1:3190927-3190946 | Msa0001500:CDS | 40.0% | |
| AATTGAACAGAGGGGTTAAC+AGG | - | chr1_1:3191036-3191055 | None:intergenic | 40.0% | |
| AACTTCTTGACGATCATCTG+AGG | + | chr1_1:3191127-3191146 | Msa0001500:CDS | 40.0% | |
| ACTTCTTGACGATCATCTGA+GGG | + | chr1_1:3191128-3191147 | Msa0001500:CDS | 40.0% | |
| ATTACTCTTCTCCTTCTCCT+TGG | - | chr1_1:3191166-3191185 | None:intergenic | 40.0% | |
| GGAGAAGGAGAAGAGTAATT+TGG | + | chr1_1:3191167-3191186 | Msa0001500:CDS | 40.0% | |
| AGTAATTTGGCAGCTAAGCT+TGG | + | chr1_1:3191180-3191199 | Msa0001500:CDS | 40.0% | |
| AAGGGTGATATAGCATCGTA+GGG | - | chr1_1:3191219-3191238 | None:intergenic | 40.0% | |
| AAAACCCATATTTGTTCCGG+AGG | - | chr1_1:3191395-3191414 | None:intergenic | 40.0% | |
| TATCGAGGAATGCTTACTTG+AGG | - | chr1_1:3191423-3191442 | None:intergenic | 40.0% | |
| TTGCAGATCTACATGAAAGC+AGG | - | chr1_1:3191506-3191525 | None:intergenic | 40.0% | |
| GCTTTCATGTAGATCTGCAA+TGG | + | chr1_1:3191506-3191525 | Msa0001500:intron | 40.0% | |
| ! | AATATTTTGCAACAGGCCCA+AGG | - | chr1_1:3191634-3191653 | None:intergenic | 40.0% |
| ! | CCATCTGATAATGTTAGCTC+TGG | - | chr1_1:3192108-3192127 | None:intergenic | 40.0% |
| CCAGAGCTAACATTATCAGA+TGG | + | chr1_1:3192105-3192124 | Msa0001500:CDS | 40.0% | |
| ATCAGATGGACATAGCAGTA+AGG | + | chr1_1:3192119-3192138 | Msa0001500:CDS | 40.0% | |
| TTCCGTTCACTAATGATAGG+TGG | + | chr1_1:3192898-3192917 | Msa0001500:CDS | 40.0% | |
| TTAAGTCTCAATCCATGGTC+AGG | - | chr1_1:3193259-3193278 | None:intergenic | 40.0% | |
| ATCACATTAGACGAATGGCT+TGG | - | chr1_1:3193476-3193495 | None:intergenic | 40.0% | |
| TTCAAGACACTGAATGAGGA+GGG | - | chr1_1:3193535-3193554 | None:intergenic | 40.0% | |
| CTACTTGTATATACTGCCAC+AGG | - | chr1_1:3193622-3193641 | None:intergenic | 40.0% | |
| ATCCATTGCACTTATCTGCA+TGG | + | chr1_1:3194016-3194035 | Msa0001500:intron | 40.0% | |
| CAAACATGTGAGTGAAATGC+TGG | + | chr1_1:3194381-3194400 | Msa0001500:intron | 40.0% | |
| ATAAGAGAGCAGTAGAATGC+TGG | - | chr1_1:3194570-3194589 | None:intergenic | 40.0% | |
| TTGATCATAGTCATCCTCCT+GGG | - | chr1_1:3194620-3194639 | None:intergenic | 40.0% | |
| TTTGATCATAGTCATCCTCC+TGG | - | chr1_1:3194621-3194640 | None:intergenic | 40.0% | |
| TAGTTAATCTGCAATGGTGC+AGG | + | chr1_1:3194819-3194838 | Msa0001500:intron | 40.0% | |
| AGCTTCAGTGTTTATAGCAC+CGG | - | chr1_1:3194895-3194914 | None:intergenic | 40.0% | |
| TCCTCTGCACTAGGTTATAA+AGG | - | chr1_1:3194958-3194977 | None:intergenic | 40.0% | |
| AACAAAACGAGATTCGGGTA+TGG | - | chr1_1:3195113-3195132 | None:intergenic | 40.0% | |
| AAGGGAACAAAACGAGATTC+GGG | - | chr1_1:3195118-3195137 | None:intergenic | 40.0% | |
| CAAGGGAACAAAACGAGATT+CGG | - | chr1_1:3195119-3195138 | None:intergenic | 40.0% | |
| ATCAGATTTACTGCTTCTGC+AGG | + | chr1_1:3195147-3195166 | Msa0001500:CDS | 40.0% | |
| ATGTTCCATTCTCAGATTGC+TGG | + | chr1_1:3195430-3195449 | Msa0001500:intron | 40.0% | |
| ! | CAAATCCATTCCAAGTATCG+TGG | + | chr1_1:3195468-3195487 | Msa0001500:CDS | 40.0% |
| ! | AATCCATTCCAAGTATCGTG+GGG | + | chr1_1:3195470-3195489 | Msa0001500:CDS | 40.0% |
| !!! | CCGTTTTTTTCACCTTAGAG+TGG | + | chr1_1:3195815-3195834 | Msa0001500:intron | 40.0% |
| !! | TAGGTTAGCCTGCATTATGA+GGG | + | chr1_1:3196068-3196087 | Msa0001500:intron | 40.0% |
| AGTTTATCCTACAAGGACCA+AGG | - | chr1_1:3196159-3196178 | None:intergenic | 40.0% | |
| TTGGTCCTTGTAGGATAAAC+TGG | + | chr1_1:3196158-3196177 | Msa0001500:intron | 40.0% | |
| GGGTTTGAAGAAGCAAAACA+TGG | + | chr1_1:3196328-3196347 | Msa0001500:intron | 40.0% | |
| ACCTTACCTTATCTCTTTCC+TGG | + | chr1_1:3196432-3196451 | Msa0001500:intron | 40.0% | |
| TCCAGGAAAGAGATAAGGTA+AGG | - | chr1_1:3196436-3196455 | None:intergenic | 40.0% | |
| ATCTCTTTCCTGGATAATCC+AGG | + | chr1_1:3196442-3196461 | Msa0001500:intron | 40.0% | |
| ATCTCTTTCCTGGATTATCC+AGG | - | chr1_1:3196453-3196472 | None:intergenic | 40.0% | |
| CGTGACTATTGTTGCAAAAC+CGG | + | chr1_1:3196843-3196862 | Msa0001500:CDS | 40.0% | |
| GTGACTATTGTTGCAAAACC+GGG | + | chr1_1:3196844-3196863 | Msa0001500:CDS | 40.0% | |
| GGAATTTCCAATTTCAAGCC+CGG | - | chr1_1:3196865-3196884 | None:intergenic | 40.0% | |
| TTCTCAATCACAACTCCATC+TGG | - | chr1_1:3196886-3196905 | None:intergenic | 40.0% | |
| TGCATGAGATATTTGCAGTC+TGG | - | chr1_1:3197139-3197158 | None:intergenic | 40.0% | |
| TATCTCATGCACGATTCCAA+TGG | + | chr1_1:3197148-3197167 | Msa0001500:intron | 40.0% | |
| AATTTCAGAGTCCAGCAGAA+AGG | - | chr1_1:3197228-3197247 | None:intergenic | 40.0% | |
| AAAAGGACCAAGTTTGAGCA+TGG | - | chr1_1:3197359-3197378 | None:intergenic | 40.0% | |
| !!! | TTTTGAAACTGGCCCTCTAA+CGG | + | chr1_1:3197385-3197404 | Msa0001500:intron | 40.0% |
| GCCCTGATACTTCCTTTAAT+TGG | + | chr1_1:3197489-3197508 | Msa0001500:intron | 40.0% | |
| !!! | AATGCTGCAAGTTGCTTTTC+AGG | + | chr1_1:3197565-3197584 | Msa0001500:intron | 40.0% |
| GGTTCAAGAATCACATGCTA+AGG | - | chr1_1:3197634-3197653 | None:intergenic | 40.0% | |
| GCAATTGAAAGGGAACATTG+AGG | - | chr1_1:3197685-3197704 | None:intergenic | 40.0% | |
| ATGCTGCCTAGCAATTGAAA+GGG | - | chr1_1:3197695-3197714 | None:intergenic | 40.0% | |
| ACTTGAAGTACATGCTGCAT+TGG | + | chr1_1:3197721-3197740 | Msa0001500:intron | 40.0% | |
| CTACATAGATCTCTGTGAAC+AGG | + | chr1_1:3197995-3198014 | Msa0001500:intron | 40.0% | |
| ATTGAGCGGTAGGCTATTTA+AGG | + | chr1_1:3198040-3198059 | Msa0001500:intron | 40.0% | |
| ! | AGGTTTCCAAAGTTTGGGAT+AGG | - | chr1_1:3198068-3198087 | None:intergenic | 40.0% |
| CGAGTAAGGTTTCCAAAGTT+TGG | - | chr1_1:3198074-3198093 | None:intergenic | 40.0% | |
| CTTGGAATAAACAAATGGGG+AGG | - | chr1_1:3198123-3198142 | None:intergenic | 40.0% | |
| GACAAAGGAATGGAATGTGT+TGG | - | chr1_1:3198192-3198211 | None:intergenic | 40.0% | |
| !! | TGAGAGGAGTATTTAGTGAG+AGG | + | chr1_1:3198310-3198329 | Msa0001500:intron | 40.0% |
| AGTATTTAGTGAGAGGTGAC+AGG | + | chr1_1:3198317-3198336 | Msa0001500:intron | 40.0% | |
| !! | TTTTGAGTGTGGATGCTTTG+GGG | - | chr1_1:3198509-3198528 | None:intergenic | 40.0% |
| !! | CTTTTGAGTGTGGATGCTTT+GGG | - | chr1_1:3198510-3198529 | None:intergenic | 40.0% |
| !! | TCTTTTGAGTGTGGATGCTT+TGG | - | chr1_1:3198511-3198530 | None:intergenic | 40.0% |
| ! | GTATCAGAAGTACACAATCC+TGG | - | chr1_1:3198550-3198569 | None:intergenic | 40.0% |
| !! | ACCAGTTGATAGAACCTTGT+AGG | + | chr1_1:3198568-3198587 | Msa0001500:intron | 40.0% |
| TCCTACAAGGTTCTATCAAC+TGG | - | chr1_1:3198572-3198591 | None:intergenic | 40.0% | |
| GTATTCGTACGAATCCTACA+AGG | - | chr1_1:3198585-3198604 | None:intergenic | 40.0% | |
| GATTCGTACGAATACTGAAC+AGG | + | chr1_1:3198590-3198609 | Msa0001500:intron | 40.0% | |
| GCATAACCAACTCAAAAGGA+AGG | - | chr1_1:3198647-3198666 | None:intergenic | 40.0% | |
| TGTACTAGTAACTGGTTGGT+TGG | - | chr1_1:3198763-3198782 | None:intergenic | 40.0% | |
| TAAATAGAGTAAGGGAGAGC+AGG | - | chr1_1:3198802-3198821 | None:intergenic | 40.0% | |
| GTCGTTGATCTCCTGTAAAT+TGG | - | chr1_1:3199119-3199138 | None:intergenic | 40.0% | |
| TGAATGGTTCACCAATGTTG+AGG | + | chr1_1:3199157-3199176 | Msa0001500:exon | 40.0% | |
| GAATGGTTCACCAATGTTGA+GGG | + | chr1_1:3199158-3199177 | Msa0001500:exon | 40.0% | |
| AATGGTTCACCAATGTTGAG+GGG | + | chr1_1:3199159-3199178 | Msa0001500:exon | 40.0% | |
| AGCTGAAATAAGAGGGAGAG+GGG | - | chr1_1:3190245-3190264 | None:intergenic | 45.0% | |
| CAAGCTGAAATAAGAGGGAG+AGG | - | chr1_1:3190247-3190266 | None:intergenic | 45.0% | |
| CGACGCAAGCTGAAATAAGA+GGG | - | chr1_1:3190252-3190271 | None:intergenic | 45.0% | |
| ACGACGCAAGCTGAAATAAG+AGG | - | chr1_1:3190253-3190272 | None:intergenic | 45.0% | |
| GATCGTACTAACAACGACGA+TGG | - | chr1_1:3190323-3190342 | None:intergenic | 45.0% | |
| AATGATGAGTGGCGACTTGA+CGG | - | chr1_1:3190573-3190592 | None:intergenic | 45.0% | |
| TGATTGCCATTCTGTTGCGA+AGG | - | chr1_1:3190615-3190634 | None:intergenic | 45.0% | |
| TCTTCCCTTGCTCGTCATAA+TGG | + | chr1_1:3190685-3190704 | Msa0001500:CDS | 45.0% | |
| ! | GCTGTAGCATCCAACCTTTT+TGG | - | chr1_1:3190767-3190786 | None:intergenic | 45.0% |
| GTTGCGAGATCGAAACTTCT+TGG | - | chr1_1:3190845-3190864 | None:intergenic | 45.0% | |
| CGCAACAAGAAACTCTGCTT+CGG | + | chr1_1:3190859-3190878 | Msa0001500:CDS | 45.0% | |
| TCGACAATGACGATGCAATC+GGG | - | chr1_1:3190898-3190917 | None:intergenic | 45.0% | |
| GAATCGACAAGAGCGACAAT+TGG | - | chr1_1:3190970-3190989 | None:intergenic | 45.0% | |
| AAGCAATGCGGCTGAAAGTA+TGG | - | chr1_1:3191005-3191024 | None:intergenic | 45.0% | |
| CAGGAATGGGATAAGCAATG+CGG | - | chr1_1:3191017-3191036 | None:intergenic | 45.0% | |
| ACAGAGGGGTTAACAGGAAT+GGG | - | chr1_1:3191030-3191049 | None:intergenic | 45.0% | |
| AACAGAGGGGTTAACAGGAA+TGG | - | chr1_1:3191031-3191050 | None:intergenic | 45.0% | |
| ! | CTTCTCGAGAAGCAGTGTTT+TGG | - | chr1_1:3191085-3191104 | None:intergenic | 45.0% |
| AGGGTGATATAGCATCGTAG+GGG | - | chr1_1:3191218-3191237 | None:intergenic | 45.0% | |
| CAAGGGTGATATAGCATCGT+AGG | - | chr1_1:3191220-3191239 | None:intergenic | 45.0% | |
| TGGTGTACTACTACCTTGAG+GGG | - | chr1_1:3191244-3191263 | None:intergenic | 45.0% | |
| GTGGTGTACTACTACCTTGA+GGG | - | chr1_1:3191245-3191264 | None:intergenic | 45.0% | |
| TGTGGTGTACTACTACCTTG+AGG | - | chr1_1:3191246-3191265 | None:intergenic | 45.0% | |
| TTGAAGCTCAATCATGCCTC+CGG | + | chr1_1:3191376-3191395 | Msa0001500:CDS | 45.0% | |
| TCATGCCTCCGGAACAAATA+TGG | + | chr1_1:3191387-3191406 | Msa0001500:CDS | 45.0% | |
| CATGCCTCCGGAACAAATAT+GGG | + | chr1_1:3191388-3191407 | Msa0001500:CDS | 45.0% | |
| TAGACCCTCAACTCCAAGTA+CGG | + | chr1_1:3191782-3191801 | Msa0001500:intron | 45.0% | |
| ! | AAAAGTGCGCACATCAATGC+TGG | - | chr1_1:3191984-3192003 | None:intergenic | 45.0% |
| ! | TGATGTGCGCACTTTTAAGC+AGG | + | chr1_1:3191988-3192007 | Msa0001500:CDS | 45.0% |
| AGATGGACATAGCAGTAAGG+AGG | + | chr1_1:3192122-3192141 | Msa0001500:CDS | 45.0% | |
| GTATGCATCTAAGCTACTGC+TGG | - | chr1_1:3192321-3192340 | None:intergenic | 45.0% | |
| GATAGTTTGACCGTTAGGCA+TGG | - | chr1_1:3192721-3192740 | None:intergenic | 45.0% | |
| TGCAGGCATACATTTGACGA+TGG | + | chr1_1:3192868-3192887 | Msa0001500:intron | 45.0% | |
| ACTAATGATAGGTGGAACCC+TGG | + | chr1_1:3192906-3192925 | Msa0001500:CDS | 45.0% | |
| TGTGATGAAGTGCGACAATG+TGG | + | chr1_1:3193162-3193181 | Msa0001500:CDS | 45.0% | |
| GTGATGAAGTGCGACAATGT+GGG | + | chr1_1:3193163-3193182 | Msa0001500:CDS | 45.0% | |
| ATTCAATGGCTTCCTGACCA+TGG | + | chr1_1:3193244-3193263 | Msa0001500:intron | 45.0% | |
| GTGAAGTAGCAGTGTTACAC+AGG | - | chr1_1:3193391-3193410 | None:intergenic | 45.0% | |
| GTTCAAGACACTGAATGAGG+AGG | - | chr1_1:3193536-3193555 | None:intergenic | 45.0% | |
| ATACTGCCACAGGGTAAAAC+TGG | - | chr1_1:3193612-3193631 | None:intergenic | 45.0% | |
| GACCATGCAGATAAGTGCAA+TGG | - | chr1_1:3194021-3194040 | None:intergenic | 45.0% | |
| TGCACTTATCTGCATGGTCA+AGG | + | chr1_1:3194022-3194041 | Msa0001500:intron | 45.0% | |
| GAATTAGTAGGTCCTGACTC+AGG | - | chr1_1:3194049-3194068 | None:intergenic | 45.0% | |
| TCTCGTTTGGTCCTCTGTAT+AGG | + | chr1_1:3194448-3194467 | Msa0001500:intron | 45.0% | |
| GTTTGGTCCTCTGTATAGGT+GGG | + | chr1_1:3194452-3194471 | Msa0001500:intron | 45.0% | |
| AAACTCACCCACCTATACAG+AGG | - | chr1_1:3194462-3194481 | None:intergenic | 45.0% | |
| CTTCTACAAGGAACAGATGC+TGG | + | chr1_1:3194643-3194662 | Msa0001500:CDS | 45.0% | |
| ! | TTCAGTGTTTATAGCACCGG+TGG | - | chr1_1:3194892-3194911 | None:intergenic | 45.0% |
| GCCTTTATAACCTAGTGCAG+AGG | + | chr1_1:3194954-3194973 | Msa0001500:intron | 45.0% | |
| !! | CGAATCTCGTTTTGTTCCCT+TGG | + | chr1_1:3195117-3195136 | Msa0001500:CDS | 45.0% |
| !! | TTTAAAGCGTCGGTTCTAGC+TGG | - | chr1_1:3195308-3195327 | None:intergenic | 45.0% |
| CTTGGGACCCGAATATGAAA+AGG | + | chr1_1:3195340-3195359 | Msa0001500:CDS | 45.0% | |
| GAAAGCCAGCAATCTGAGAA+TGG | - | chr1_1:3195438-3195457 | None:intergenic | 45.0% | |
| !! | AGATTGCTGGCTTTCGAAGT+CGG | + | chr1_1:3195443-3195462 | Msa0001500:intron | 45.0% |
| TGGACCCTCTAGACAATTGA+AGG | - | chr1_1:3195621-3195640 | None:intergenic | 45.0% | |
| GGTGAAAAAAACGGGAGAGT+GGG | - | chr1_1:3195809-3195828 | None:intergenic | 45.0% | |
| AGGTGAAAAAAACGGGAGAG+TGG | - | chr1_1:3195810-3195829 | None:intergenic | 45.0% | |
| TCACCTTAGAGTGGGATGTA+TGG | + | chr1_1:3195824-3195843 | Msa0001500:intron | 45.0% | |
| ACACCATACATCCCACTCTA+AGG | - | chr1_1:3195830-3195849 | None:intergenic | 45.0% | |
| GTTGATGTGGCCAAGTTAGT+AGG | + | chr1_1:3196049-3196068 | Msa0001500:intron | 45.0% | |
| TGCAGGCTAACCTACTAACT+TGG | - | chr1_1:3196062-3196081 | None:intergenic | 45.0% | |
| !! | GTAGGTTAGCCTGCATTATG+AGG | + | chr1_1:3196067-3196086 | Msa0001500:intron | 45.0% |
| AGGAAAATTGAGCCTGTGCA+TGG | - | chr1_1:3196355-3196374 | None:intergenic | 45.0% | |
| ! | TGACCTTTTACCCGCTATCA+GGG | + | chr1_1:3196817-3196836 | Msa0001500:intron | 45.0% |
| TGCAAAACCGGGCTTGAAAT+TGG | + | chr1_1:3196855-3196874 | Msa0001500:CDS | 45.0% | |
| GATTCCAATGGTTCTCCAAC+CGG | + | chr1_1:3197160-3197179 | Msa0001500:intron | 45.0% | |
| ATTCCAATGGTTCTCCAACC+GGG | + | chr1_1:3197161-3197180 | Msa0001500:intron | 45.0% | |
| TCAAGATTATGACTCCCGGT+TGG | - | chr1_1:3197178-3197197 | None:intergenic | 45.0% | |
| TCTCATGCCATGCTCAAACT+TGG | + | chr1_1:3197349-3197368 | Msa0001500:intron | 45.0% | |
| AATTCCAAAGCCATCTCCCT+CGG | + | chr1_1:3197467-3197486 | Msa0001500:intron | 45.0% | |
| CATTGAAGCAGACAAGTTGC+TGG | - | chr1_1:3197549-3197568 | None:intergenic | 45.0% | |
| CATGCTGCCTAGCAATTGAA+AGG | - | chr1_1:3197696-3197715 | None:intergenic | 45.0% | |
| AGATCTCTGTGAACAGGACA+AGG | + | chr1_1:3198001-3198020 | Msa0001500:intron | 45.0% | |
| AGGAATGACAATTGAGCGGT+AGG | + | chr1_1:3198030-3198049 | Msa0001500:intron | 45.0% | |
| ! | AAGGTGCCTATCCCAAACTT+TGG | + | chr1_1:3198059-3198078 | Msa0001500:intron | 45.0% |
| AGATATCCAGGAACCGAGTA+AGG | - | chr1_1:3198088-3198107 | None:intergenic | 45.0% | |
| !! | AAAGGTGCTGAGAGATATCC+AGG | - | chr1_1:3198100-3198119 | None:intergenic | 45.0% |
| AACAACAGGATGGTAAGGGA+AGG | - | chr1_1:3198157-3198176 | None:intergenic | 45.0% | |
| CTGCAACAACAGGATGGTAA+GGG | - | chr1_1:3198161-3198180 | None:intergenic | 45.0% | |
| TTTCAGCTGCAACAACAGGA+TGG | - | chr1_1:3198167-3198186 | None:intergenic | 45.0% | |
| AGATGAGGGTGACAAAGGAA+TGG | - | chr1_1:3198202-3198221 | None:intergenic | 45.0% | |
| AGAGAGAGAGAGAGAGATGA+GGG | - | chr1_1:3198216-3198235 | None:intergenic | 45.0% | |
| !! | TGTGTTGGTTAGTACACGTG+CGG | - | chr1_1:3198428-3198447 | None:intergenic | 45.0% |
| GTGAACTTCCACAAACTGCT+AGG | + | chr1_1:3198716-3198735 | Msa0001500:intron | 45.0% | |
| ! | CTGGTTGGTTGGAAAAGACT+AGG | - | chr1_1:3198752-3198771 | None:intergenic | 45.0% |
| GGAATGTGTATGTTAGGTGC+AGG | - | chr1_1:3198864-3198883 | None:intergenic | 45.0% | |
| TCATAATCCCCATGCTCTTC+AGG | - | chr1_1:3198938-3198957 | None:intergenic | 45.0% | |
| TCTCTTTACTGGGAACCGAA+AGG | + | chr1_1:3199265-3199284 | Msa0001500:three_prime_UTR | 45.0% | |
| GCAACAGTTGTCACGCATAG+AGG | - | chr1_1:3190160-3190179 | None:intergenic | 50.0% | |
| ATTGACAAAGGCGGTGTGGA+CGG | - | chr1_1:3190213-3190232 | None:intergenic | 50.0% | |
| GCTGAAATAAGAGGGAGAGG+GGG | - | chr1_1:3190244-3190263 | None:intergenic | 50.0% | |
| !! | TTTTGATTGCGGTGGCGAGA+CGG | - | chr1_1:3190295-3190314 | None:intergenic | 50.0% |
| TTACGGCCTTCGCAACAGAA+TGG | + | chr1_1:3190606-3190625 | Msa0001500:CDS | 50.0% | |
| GCGACCATTATGACGAGCAA+GGG | - | chr1_1:3190692-3190711 | None:intergenic | 50.0% | |
| AGCGACCATTATGACGAGCA+AGG | - | chr1_1:3190693-3190712 | None:intergenic | 50.0% | |
| GCCAGAGAGAATTGGAAGAG+GGG | - | chr1_1:3190789-3190808 | None:intergenic | 50.0% | |
| CGCCAGAGAGAATTGGAAGA+GGG | - | chr1_1:3190790-3190809 | None:intergenic | 50.0% | |
| ACGCCAGAGAGAATTGGAAG+AGG | - | chr1_1:3190791-3190810 | None:intergenic | 50.0% | |
| TCCAATTCTCTCTGGCGTAC+TGG | + | chr1_1:3190793-3190812 | Msa0001500:CDS | 50.0% | |
| ACCAGTACGCCAGAGAGAAT+TGG | - | chr1_1:3190797-3190816 | None:intergenic | 50.0% | |
| AATTCTCTCTGGCGTACTGG+TGG | + | chr1_1:3190796-3190815 | Msa0001500:CDS | 50.0% | |
| CTTCTTGGGACTGTTGCTGT+TGG | - | chr1_1:3190830-3190849 | None:intergenic | 50.0% | |
| ACAATGACGATGCAATCGGG+AGG | - | chr1_1:3190895-3190914 | None:intergenic | 50.0% | |
| ! | ATGCGGCTGAAAGTATGGAG+AGG | - | chr1_1:3191000-3191019 | None:intergenic | 50.0% |
| ACAACAAGCTGCCAAGGAGA+AGG | + | chr1_1:3191152-3191171 | Msa0001500:CDS | 50.0% | |
| GGTGTACTACTACCTTGAGG+GGG | - | chr1_1:3191243-3191262 | None:intergenic | 50.0% | |
| GCTTCCGTACTTGGAGTTGA+GGG | - | chr1_1:3191789-3191808 | None:intergenic | 50.0% | |
| TCAACTCCAAGTACGGAAGC+CGG | + | chr1_1:3191789-3191808 | Msa0001500:CDS | 50.0% | |
| GCAACAGCTAGGCCATATGA+AGG | - | chr1_1:3192299-3192318 | None:intergenic | 50.0% | |
| CGTTTGGTCCTCTGTATAGG+TGG | + | chr1_1:3194451-3194470 | Msa0001500:intron | 50.0% | |
| TTGAAAGGGTTACTGCTCCC+AGG | + | chr1_1:3194600-3194619 | Msa0001500:intron | 50.0% | |
| ACAAGGAACAGATGCTGGAC+CGG | + | chr1_1:3194648-3194667 | Msa0001500:CDS | 50.0% | |
| CAACCCCACGATACTTGGAA+TGG | - | chr1_1:3195476-3195495 | None:intergenic | 50.0% | |
| ! | CATTCCAAGTATCGTGGGGT+TGG | + | chr1_1:3195474-3195493 | Msa0001500:CDS | 50.0% |
| CTATCCAACCCCACGATACT+TGG | - | chr1_1:3195481-3195500 | None:intergenic | 50.0% | |
| TCTGTTAGTCGTGACTCGTG+AGG | + | chr1_1:3195570-3195589 | Msa0001500:intron | 50.0% | |
| CATACAGGCAATACCCCAAG+TGG | - | chr1_1:3195682-3195701 | None:intergenic | 50.0% | |
| GGTATGACTGCATGTCTGTG+AGG | + | chr1_1:3196131-3196150 | Msa0001500:intron | 50.0% | |
| TGCATGTCTGTGAGGAACCT+TGG | + | chr1_1:3196139-3196158 | Msa0001500:intron | 50.0% | |
| TGAGGAACCTTGGTCCTTGT+AGG | + | chr1_1:3196149-3196168 | Msa0001500:intron | 50.0% | |
| GCAAAACATGGACCATGCAC+AGG | + | chr1_1:3196340-3196359 | Msa0001500:intron | 50.0% | |
| ACCACTGCCTGAAAGACCTA+TGG | + | chr1_1:3196771-3196790 | Msa0001500:intron | 50.0% | |
| TCCATAGGTCTTTCAGGCAG+TGG | - | chr1_1:3196775-3196794 | None:intergenic | 50.0% | |
| !! | CTGATAGCGGGTAAAAGGTC+AGG | - | chr1_1:3196818-3196837 | None:intergenic | 50.0% |
| ! | CTGACCTTTTACCCGCTATC+AGG | + | chr1_1:3196816-3196835 | Msa0001500:intron | 50.0% |
| ! | GACCTTTTACCCGCTATCAG+GGG | + | chr1_1:3196818-3196837 | Msa0001500:intron | 50.0% |
| CTTTGTACCCTCCTTTCTGC+TGG | + | chr1_1:3197214-3197233 | Msa0001500:intron | 50.0% | |
| TCAGAGTCCAGCAGAAAGGA+GGG | - | chr1_1:3197224-3197243 | None:intergenic | 50.0% | |
| TTCAGAGTCCAGCAGAAAGG+AGG | - | chr1_1:3197225-3197244 | None:intergenic | 50.0% | |
| TTACGATCGAACCCTGTGTG+AGG | + | chr1_1:3197271-3197290 | Msa0001500:intron | 50.0% | |
| TACGATCGAACCCTGTGTGA+GGG | + | chr1_1:3197272-3197291 | Msa0001500:intron | 50.0% | |
| TTGGGTCTAACCCTCACACA+GGG | - | chr1_1:3197285-3197304 | None:intergenic | 50.0% | |
| TTTGGGTCTAACCCTCACAC+AGG | - | chr1_1:3197286-3197305 | None:intergenic | 50.0% | |
| CAGAGTGATGCACCGTTAGA+GGG | - | chr1_1:3197400-3197419 | None:intergenic | 50.0% | |
| ACAGAGTGATGCACCGTTAG+AGG | - | chr1_1:3197401-3197420 | None:intergenic | 50.0% | |
| TAACGGTGCATCACTCTGTC+AGG | + | chr1_1:3197402-3197421 | Msa0001500:intron | 50.0% | |
| AACGGTGCATCACTCTGTCA+GGG | + | chr1_1:3197403-3197422 | Msa0001500:intron | 50.0% | |
| !! | AAAGGAAGTATCAGGGCCGA+GGG | - | chr1_1:3197486-3197505 | None:intergenic | 50.0% |
| !! | TAAAGGAAGTATCAGGGCCG+AGG | - | chr1_1:3197487-3197506 | None:intergenic | 50.0% |
| TGAAGCAGACAAGTTGCTGG+AGG | - | chr1_1:3197546-3197565 | None:intergenic | 50.0% | |
| ! | ATTGAGGGTGCGTTTGTTCC+CGG | - | chr1_1:3197669-3197688 | None:intergenic | 50.0% |
| ! | GCTGCATTGGTAGCTTAAGC+TGG | + | chr1_1:3197734-3197753 | Msa0001500:intron | 50.0% |
| ACTGTTGCATAGTGCCCTTG+TGG | - | chr1_1:3197844-3197863 | None:intergenic | 50.0% | |
| TGGAAACCTTACTCGGTTCC+TGG | + | chr1_1:3198079-3198098 | Msa0001500:intron | 50.0% | |
| GGTAAGGGAAGGATCACTGA+TGG | - | chr1_1:3198146-3198165 | None:intergenic | 50.0% | |
| GCTGCAACAACAGGATGGTA+AGG | - | chr1_1:3198162-3198181 | None:intergenic | 50.0% | |
| ! | GGGTTTTCAGCTGCAACAAC+AGG | - | chr1_1:3198171-3198190 | None:intergenic | 50.0% |
| GAGAGAGATGAGGGTGACAA+AGG | - | chr1_1:3198207-3198226 | None:intergenic | 50.0% | |
| GAGAGAGAGAGAGAGAGATG+AGG | - | chr1_1:3198217-3198236 | None:intergenic | 50.0% | |
| CCTTGTCTCCTAGCAGTTTG+TGG | - | chr1_1:3198727-3198746 | None:intergenic | 50.0% | |
| CCACAAACTGCTAGGAGACA+AGG | + | chr1_1:3198724-3198743 | Msa0001500:intron | 50.0% | |
| ATAGAGTAAGGGAGAGCAGG+TGG | - | chr1_1:3198799-3198818 | None:intergenic | 50.0% | |
| AGGTGCAGGCTCGATAGAAA+TGG | - | chr1_1:3198850-3198869 | None:intergenic | 50.0% | |
| CTTCAGGTCAGCATGCTGAA+AGG | - | chr1_1:3198922-3198941 | None:intergenic | 50.0% | |
| ! | CATGCTGACCTGAAGAGCAT+GGG | + | chr1_1:3198927-3198946 | Msa0001500:intron | 50.0% |
| ! | ATGCTGACCTGAAGAGCATG+GGG | + | chr1_1:3198928-3198947 | Msa0001500:intron | 50.0% |
| ! | GCACGGCAAATCAAAGCATC+TGG | - | chr1_1:3199211-3199230 | None:intergenic | 50.0% |
| ! | CTGTACAACGAGTTGGAGCA+CGG | + | chr1_1:3199470-3199489 | Msa0001500:three_prime_UTR | 50.0% |
| TGCGATTGACAAAGGCGGTG+TGG | - | chr1_1:3190217-3190236 | None:intergenic | 55.0% | |
| GACGCTGCGATTGACAAAGG+CGG | - | chr1_1:3190222-3190241 | None:intergenic | 55.0% | |
| GCCCCTCTTCCAATTCTCTC+TGG | + | chr1_1:3190785-3190804 | Msa0001500:CDS | 55.0% | |
| ATGCAATCGGGAGGCTGAGT+AGG | - | chr1_1:3190886-3190905 | None:intergenic | 55.0% | |
| GAGGGAACAACAAGCTGCCA+AGG | + | chr1_1:3191146-3191165 | Msa0001500:CDS | 55.0% | |
| ATATCACCCTTGCCCCCTCA+AGG | + | chr1_1:3191228-3191247 | Msa0001500:CDS | 55.0% | |
| CTACTACCTTGAGGGGGCAA+GGG | - | chr1_1:3191237-3191256 | None:intergenic | 55.0% | |
| ACTACTACCTTGAGGGGGCA+AGG | - | chr1_1:3191238-3191257 | None:intergenic | 55.0% | |
| GGCTTCCGTACTTGGAGTTG+AGG | - | chr1_1:3191790-3191809 | None:intergenic | 55.0% | |
| CAACTCCAAGTACGGAAGCC+GGG | + | chr1_1:3191790-3191809 | Msa0001500:CDS | 55.0% | |
| AGCTACTGCTGGCAACAGCT+AGG | - | chr1_1:3192310-3192329 | None:intergenic | 55.0% | |
| !! | GAGGTGCCAGTTTTACCCTG+TGG | + | chr1_1:3193603-3193622 | Msa0001500:intron | 55.0% |
| CATGGTCAAGGTCCTGAGTC+AGG | + | chr1_1:3194034-3194053 | Msa0001500:intron | 55.0% | |
| !! | CCTTTGAGATTGGGGGCATC+TGG | - | chr1_1:3194527-3194546 | None:intergenic | 55.0% |
| CCAGATGCCCCCAATCTCAA+AGG | + | chr1_1:3194524-3194543 | Msa0001500:CDS | 55.0% | |
| AAAGGGTTACTGCTCCCAGG+AGG | + | chr1_1:3194603-3194622 | Msa0001500:intron | 55.0% | |
| TCGGGTCCCAAGTCTATCAC+AGG | - | chr1_1:3195332-3195351 | None:intergenic | 55.0% | |
| TGATTGTGAGAGGCGACGTG+TGG | + | chr1_1:3195503-3195522 | Msa0001500:CDS | 55.0% | |
| TGAGAGGCGACGTGTGGTTT+GGG | + | chr1_1:3195509-3195528 | Msa0001500:CDS | 55.0% | |
| AACGGGAGAGTGGGCATATG+AGG | - | chr1_1:3195800-3195819 | None:intergenic | 55.0% | |
| ! | GCCTGCATTATGAGGGTGTG+AGG | + | chr1_1:3196075-3196094 | Msa0001500:intron | 55.0% |
| GCCTCACACCCTCATAATGC+AGG | - | chr1_1:3196079-3196098 | None:intergenic | 55.0% | |
| !! | TGCCCCTGATAGCGGGTAAA+AGG | - | chr1_1:3196823-3196842 | None:intergenic | 55.0% |
| TAGTCACGTGCCCCTGATAG+CGG | - | chr1_1:3196831-3196850 | None:intergenic | 55.0% | |
| ACTCCCGGTTGGAGAACCAT+TGG | - | chr1_1:3197167-3197186 | None:intergenic | 55.0% | |
| ! | GAGCATGGCATGAGAGCATG+AGG | - | chr1_1:3197344-3197363 | None:intergenic | 55.0% |
| ACGGTGCATCACTCTGTCAG+GGG | + | chr1_1:3197404-3197423 | Msa0001500:intron | 55.0% | |
| TGCATCACTCTGTCAGGGGT+AGG | + | chr1_1:3197408-3197427 | Msa0001500:intron | 55.0% | |
| GGGAAGGATCACTGATGGCT+TGG | - | chr1_1:3198141-3198160 | None:intergenic | 55.0% | |
| GTTGGTTAGTACACGTGCGG+TGG | - | chr1_1:3198425-3198444 | None:intergenic | 55.0% | |
| !! | GGATGCTTTGGGGAAGACGA+CGG | - | chr1_1:3198499-3198518 | None:intergenic | 55.0% |
| GAAGACATCAAGCTGCTGCC+AGG | + | chr1_1:3198529-3198548 | Msa0001500:intron | 55.0% | |
| AAGGGAGAGCAGGTGGCATT+CGG | - | chr1_1:3198792-3198811 | None:intergenic | 55.0% | |
| GCATGCTGACCTGAAGAGCA+TGG | + | chr1_1:3198926-3198945 | Msa0001500:intron | 55.0% | |
| GGCGGCGTGATCAGAGAAAG+AGG | - | chr1_1:3190182-3190201 | None:intergenic | 60.0% | |
| GGGGACGCTGCGATTGACAA+AGG | - | chr1_1:3190225-3190244 | None:intergenic | 60.0% | |
| TGGAACCCGGCTTCCGTACT+TGG | - | chr1_1:3191798-3191817 | None:intergenic | 60.0% | |
| AGATGCTGGACCGGCAGTAC+AGG | + | chr1_1:3194657-3194676 | Msa0001500:CDS | 60.0% | |
| GTGAGAGGCGACGTGTGGTT+TGG | + | chr1_1:3195508-3195527 | Msa0001500:CDS | 60.0% | |
| GAGAGGCGACGTGTGGTTTG+GGG | + | chr1_1:3195510-3195529 | Msa0001500:CDS | 60.0% | |
| AGTCACGTGCCCCTGATAGC+GGG | - | chr1_1:3196830-3196849 | None:intergenic | 60.0% | |
| AGTATCAGGGCCGAGGGAGA+TGG | - | chr1_1:3197480-3197499 | None:intergenic | 60.0% | |
| !! | TGCTTTGGGGAAGACGACGG+TGG | - | chr1_1:3198496-3198515 | None:intergenic | 60.0% |
| GTGTGGACGGAGGTTGACGG+CGG | - | chr1_1:3190200-3190219 | None:intergenic | 65.0% | |
| GCGGTGTGGACGGAGGTTGA+CGG | - | chr1_1:3190203-3190222 | None:intergenic | 65.0% | |
| GACAAAGGCGGTGTGGACGG+AGG | - | chr1_1:3190210-3190229 | None:intergenic | 65.0% | |
| AGGGCCGAGGGAGATGGCTT+TGG | - | chr1_1:3197474-3197493 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 3190058 | 3199650 | 3190058 | ID=Msa0001500;Name=Msa0001500 |
| chr1_1 | mRNA | 3190058 | 3199650 | 3190058 | ID=Msa0001500-mRNA-1;Parent=Msa0001500;Name=Msa0001500-mRNA-1;_AED=0.07;_eAED=0.07;_QI=363|1|1|1|0.94|0.9|20|491|631 |
| chr1_1 | exon | 3190058 | 3190388 | 3190058 | ID=Msa0001500-mRNA-1:exon:821;Parent=Msa0001500-mRNA-1 |
| chr1_1 | exon | 3190482 | 3191249 | 3190482 | ID=Msa0001500-mRNA-1:exon:822;Parent=Msa0001500-mRNA-1 |
| chr1_1 | exon | 3191335 | 3191425 | 3191335 | ID=Msa0001500-mRNA-1:exon:823;Parent=Msa0001500-mRNA-1 |
| chr1_1 | exon | 3191518 | 3191578 | 3191518 | ID=Msa0001500-mRNA-1:exon:824;Parent=Msa0001500-mRNA-1 |
| chr1_1 | exon | 3191785 | 3191862 | 3191785 | ID=Msa0001500-mRNA-1:exon:825;Parent=Msa0001500-mRNA-1 |
| chr1_1 | exon | 3191959 | 3192009 | 3191959 | ID=Msa0001500-mRNA-1:exon:826;Parent=Msa0001500-mRNA-1 |
| chr1_1 | exon | 3192096 | 3192148 | 3192096 | ID=Msa0001500-mRNA-1:exon:827;Parent=Msa0001500-mRNA-1 |
| chr1_1 | exon | 3192873 | 3192945 | 3192873 | ID=Msa0001500-mRNA-1:exon:828;Parent=Msa0001500-mRNA-1 |
| chr1_1 | exon | 3193145 | 3193202 | 3193145 | ID=Msa0001500-mRNA-1:exon:829;Parent=Msa0001500-mRNA-1 |
| chr1_1 | exon | 3193317 | 3193363 | 3193317 | ID=Msa0001500-mRNA-1:exon:830;Parent=Msa0001500-mRNA-1 |
| chr1_1 | exon | 3193467 | 3193517 | 3193467 | ID=Msa0001500-mRNA-1:exon:831;Parent=Msa0001500-mRNA-1 |
| chr1_1 | exon | 3194161 | 3194193 | 3194161 | ID=Msa0001500-mRNA-1:exon:832;Parent=Msa0001500-mRNA-1 |
| chr1_1 | exon | 3194350 | 3194387 | 3194350 | ID=Msa0001500-mRNA-1:exon:833;Parent=Msa0001500-mRNA-1 |
| chr1_1 | exon | 3194470 | 3194545 | 3194470 | ID=Msa0001500-mRNA-1:exon:834;Parent=Msa0001500-mRNA-1 |
| chr1_1 | exon | 3194622 | 3194678 | 3194622 | ID=Msa0001500-mRNA-1:exon:835;Parent=Msa0001500-mRNA-1 |
| chr1_1 | exon | 3195085 | 3195168 | 3195085 | ID=Msa0001500-mRNA-1:exon:836;Parent=Msa0001500-mRNA-1 |
| chr1_1 | exon | 3195263 | 3195361 | 3195263 | ID=Msa0001500-mRNA-1:exon:837;Parent=Msa0001500-mRNA-1 |
| chr1_1 | exon | 3195445 | 3195549 | 3195445 | ID=Msa0001500-mRNA-1:exon:838;Parent=Msa0001500-mRNA-1 |
| chr1_1 | exon | 3196838 | 3196909 | 3196838 | ID=Msa0001500-mRNA-1:exon:839;Parent=Msa0001500-mRNA-1 |
| chr1_1 | exon | 3199127 | 3199650 | 3199127 | ID=Msa0001500-mRNA-1:exon:840;Parent=Msa0001500-mRNA-1 |
| chr1_1 | five_prime_UTR | 3190058 | 3190388 | 3190058 | ID=Msa0001500-mRNA-1:five_prime_utr;Parent=Msa0001500-mRNA-1 |
| chr1_1 | five_prime_UTR | 3190482 | 3190513 | 3190482 | ID=Msa0001500-mRNA-1:five_prime_utr;Parent=Msa0001500-mRNA-1 |
| chr1_1 | CDS | 3190514 | 3191249 | 3190514 | ID=Msa0001500-mRNA-1:cds;Parent=Msa0001500-mRNA-1 |
| chr1_1 | CDS | 3191335 | 3191425 | 3191335 | ID=Msa0001500-mRNA-1:cds;Parent=Msa0001500-mRNA-1 |
| chr1_1 | CDS | 3191518 | 3191578 | 3191518 | ID=Msa0001500-mRNA-1:cds;Parent=Msa0001500-mRNA-1 |
| chr1_1 | CDS | 3191785 | 3191862 | 3191785 | ID=Msa0001500-mRNA-1:cds;Parent=Msa0001500-mRNA-1 |
| chr1_1 | CDS | 3191959 | 3192009 | 3191959 | ID=Msa0001500-mRNA-1:cds;Parent=Msa0001500-mRNA-1 |
| chr1_1 | CDS | 3192096 | 3192148 | 3192096 | ID=Msa0001500-mRNA-1:cds;Parent=Msa0001500-mRNA-1 |
| chr1_1 | CDS | 3192873 | 3192945 | 3192873 | ID=Msa0001500-mRNA-1:cds;Parent=Msa0001500-mRNA-1 |
| chr1_1 | CDS | 3193145 | 3193202 | 3193145 | ID=Msa0001500-mRNA-1:cds;Parent=Msa0001500-mRNA-1 |
| chr1_1 | CDS | 3193317 | 3193363 | 3193317 | ID=Msa0001500-mRNA-1:cds;Parent=Msa0001500-mRNA-1 |
| chr1_1 | CDS | 3193467 | 3193517 | 3193467 | ID=Msa0001500-mRNA-1:cds;Parent=Msa0001500-mRNA-1 |
| chr1_1 | CDS | 3194161 | 3194193 | 3194161 | ID=Msa0001500-mRNA-1:cds;Parent=Msa0001500-mRNA-1 |
| chr1_1 | CDS | 3194350 | 3194387 | 3194350 | ID=Msa0001500-mRNA-1:cds;Parent=Msa0001500-mRNA-1 |
| chr1_1 | CDS | 3194470 | 3194545 | 3194470 | ID=Msa0001500-mRNA-1:cds;Parent=Msa0001500-mRNA-1 |
| chr1_1 | CDS | 3194622 | 3194678 | 3194622 | ID=Msa0001500-mRNA-1:cds;Parent=Msa0001500-mRNA-1 |
| chr1_1 | CDS | 3195085 | 3195168 | 3195085 | ID=Msa0001500-mRNA-1:cds;Parent=Msa0001500-mRNA-1 |
| chr1_1 | CDS | 3195263 | 3195361 | 3195263 | ID=Msa0001500-mRNA-1:cds;Parent=Msa0001500-mRNA-1 |
| chr1_1 | CDS | 3195445 | 3195549 | 3195445 | ID=Msa0001500-mRNA-1:cds;Parent=Msa0001500-mRNA-1 |
| chr1_1 | CDS | 3196838 | 3196909 | 3196838 | ID=Msa0001500-mRNA-1:cds;Parent=Msa0001500-mRNA-1 |
| chr1_1 | CDS | 3199127 | 3199159 | 3199127 | ID=Msa0001500-mRNA-1:cds;Parent=Msa0001500-mRNA-1 |
| chr1_1 | three_prime_UTR | 3199160 | 3199650 | 3199160 | ID=Msa0001500-mRNA-1:three_prime_utr;Parent=Msa0001500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
