Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1365700 | XP_039688156.1 | 96.252 | 507 | 12 | 4 | 1 | 503 | 1 | 504 | 0.0 | 991 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1365700 | sp|Q9GCB9|RT02_ARATH | 62.000 | 200 | 73 | 1 | 1 | 197 | 1 | 200 | 1.85e-84 | 263 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1365700 | G7J8L5 | 96.252 | 507 | 12 | 4 | 1 | 503 | 1 | 504 | 0.0 | 990 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001500 | Msa1365700 | 0.907829 | 3.317723e-81 | -8.615850e-47 |
| Msa0013050 | Msa1365700 | 0.853002 | 3.185149e-61 | -8.615850e-47 |
| Msa0044240 | Msa1365700 | 0.860887 | 1.509946e-63 | -8.615850e-47 |
| Msa0054730 | Msa1365700 | 0.828043 | 1.119668e-54 | -8.615850e-47 |
| Msa0054750 | Msa1365700 | -0.805568 | 1.253922e-49 | -8.615850e-47 |
| Msa0058210 | Msa1365700 | 0.834463 | 2.953738e-56 | -8.615850e-47 |
| Msa0084940 | Msa1365700 | -0.804023 | 2.635221e-49 | -8.615850e-47 |
| Msa0090770 | Msa1365700 | 0.893043 | 9.071617e-75 | -8.615850e-47 |
| Msa1358610 | Msa1365700 | 0.850902 | 1.257590e-60 | -8.615850e-47 |
| Msa1363710 | Msa1365700 | 0.806476 | 8.076904e-50 | -8.615850e-47 |
| Msa1365700 | Msa1384820 | 0.815032 | 1.137678e-51 | -8.615850e-47 |
| Msa1365700 | Msa1385770 | -0.804926 | 1.708132e-49 | -8.615850e-47 |
| Msa1365700 | Msa1388790 | 0.832888 | 7.311001e-56 | -8.615850e-47 |
| Msa1365700 | Msa1403930 | 0.807047 | 6.115608e-50 | -8.615850e-47 |
| Msa1365700 | Msa1409240 | -0.806382 | 8.450793e-50 | -8.615850e-47 |
| Msa1365700 | Msa1410430 | 0.811341 | 7.349141e-51 | -8.615850e-47 |
| Msa1365700 | Msa1426030 | -0.801760 | 7.733171e-49 | -8.615850e-47 |
| Msa1365700 | Msa1426340 | 0.840625 | 7.770775e-58 | -8.615850e-47 |
| Msa1365700 | Msa1432400 | -0.808905 | 2.460771e-50 | -8.615850e-47 |
| Msa1365700 | Msa1442160 | 0.832905 | 7.237603e-56 | -8.615850e-47 |
| Msa1365700 | Msa1444740 | -0.817098 | 3.932928e-52 | -8.615850e-47 |
| Msa1365700 | Msa1445950 | 0.805030 | 1.625276e-49 | -8.615850e-47 |
| Msa1365700 | Msa1449250 | 0.869520 | 2.911168e-66 | -8.615850e-47 |
| Msa1365700 | Msa1453780 | 0.920317 | 1.491890e-87 | -8.615850e-47 |
| Msa1365700 | Msa1454910 | 0.819951 | 8.865936e-53 | -8.615850e-47 |
| Msa1365700 | Msa1465960 | -0.801904 | 7.223685e-49 | -8.615850e-47 |
| Msa0605170 | Msa1365700 | -0.812382 | 4.359585e-51 | -8.615850e-47 |
| Msa0607340 | Msa1365700 | 0.897308 | 1.595285e-76 | -8.615850e-47 |
| Msa0608710 | Msa1365700 | -0.816765 | 4.670547e-52 | -8.615850e-47 |
| Msa0637190 | Msa1365700 | 0.813961 | 1.963902e-51 | -8.615850e-47 |
| Msa0647450 | Msa1365700 | 0.848746 | 5.037440e-60 | -8.615850e-47 |
| Msa0654760 | Msa1365700 | 0.819879 | 9.211804e-53 | -8.615850e-47 |
| Msa0655660 | Msa1365700 | 0.800280 | 1.551765e-48 | -8.615850e-47 |
| Msa0661190 | Msa1365700 | 0.857778 | 1.294097e-62 | -8.615850e-47 |
| Msa0757330 | Msa1365700 | 0.812524 | 4.060899e-51 | -8.615850e-47 |
| Msa0831870 | Msa1365700 | -0.812681 | 3.751377e-51 | -8.615850e-47 |
| Msa0136800 | Msa1365700 | 0.830039 | 3.675811e-55 | -8.615850e-47 |
| Msa0140650 | Msa1365700 | -0.801358 | 9.349596e-49 | -8.615850e-47 |
| Msa0148120 | Msa1365700 | -0.803356 | 3.624706e-49 | -8.615850e-47 |
| Msa0162770 | Msa1365700 | 0.850870 | 1.283536e-60 | -8.615850e-47 |
| Msa0183640 | Msa1365700 | 0.918347 | 1.743473e-86 | -8.615850e-47 |
| Msa0184780 | Msa1365700 | -0.808799 | 2.593673e-50 | -8.615850e-47 |
| Msa0189520 | Msa1365700 | -0.801170 | 1.021781e-48 | -8.615850e-47 |
| Msa0191050 | Msa1365700 | -0.803584 | 3.251425e-49 | -8.615850e-47 |
| Msa0197940 | Msa1365700 | 0.832605 | 8.592353e-56 | -8.615850e-47 |
| Msa0229490 | Msa1365700 | 0.844515 | 7.207886e-59 | -8.615850e-47 |
| Msa0233350 | Msa1365700 | -0.800496 | 1.402703e-48 | -8.615850e-47 |
| Msa1225150 | Msa1365700 | 0.814547 | 1.457056e-51 | -8.615850e-47 |
| Msa1236640 | Msa1365700 | 0.808194 | 3.492011e-50 | -8.615850e-47 |
| Msa1249640 | Msa1365700 | 0.835069 | 2.079362e-56 | -8.615850e-47 |
| Msa1253930 | Msa1365700 | 0.805654 | 1.202355e-49 | -8.615850e-47 |
| Msa1254370 | Msa1365700 | 0.847379 | 1.200368e-59 | -8.615850e-47 |
| Msa1260130 | Msa1365700 | -0.826627 | 2.445487e-54 | -8.615850e-47 |
| Msa1269300 | Msa1365700 | -0.816553 | 5.212866e-52 | -8.615850e-47 |
| Msa1270960 | Msa1365700 | 0.820759 | 5.787801e-53 | -8.615850e-47 |
| Msa1294610 | Msa1365700 | 0.834661 | 2.634403e-56 | -8.615850e-47 |
| Msa1302190 | Msa1365700 | 0.818095 | 2.343396e-52 | -8.615850e-47 |
| Msa1307660 | Msa1365700 | 0.837560 | 4.835948e-57 | -8.615850e-47 |
| Msa1308080 | Msa1365700 | 0.835802 | 1.357216e-56 | -8.615850e-47 |
| Msa1320390 | Msa1365700 | -0.825607 | 4.275211e-54 | -8.615850e-47 |
| Msa1332040 | Msa1365700 | 0.830789 | 2.408924e-55 | -8.615850e-47 |
| Msa0376450 | Msa1365700 | 0.839643 | 1.401234e-57 | -8.615850e-47 |
| Msa0380350 | Msa1365700 | 0.894327 | 2.738378e-75 | -8.615850e-47 |
| Msa0384390 | Msa1365700 | 0.833679 | 4.644119e-56 | -8.615850e-47 |
| Msa0425120 | Msa1365700 | 0.800453 | 1.431168e-48 | -8.615850e-47 |
| Msa0440130 | Msa1365700 | 0.811602 | 6.450636e-51 | -8.615850e-47 |
| Msa0442200 | Msa1365700 | -0.805104 | 1.568130e-49 | -8.615850e-47 |
| Msa0460400 | Msa1365700 | 0.851796 | 7.027491e-61 | -8.615850e-47 |
| Msa0471720 | Msa1365700 | 0.835729 | 1.416297e-56 | -8.615850e-47 |
| Msa0478610 | Msa1365700 | 0.815385 | 9.498837e-52 | -8.615850e-47 |
| Msa0997450 | Msa1365700 | 0.811885 | 5.596851e-51 | -8.615850e-47 |
| Msa1012830 | Msa1365700 | -0.800888 | 1.166412e-48 | -8.615850e-47 |
| Msa1040110 | Msa1365700 | 0.826308 | 2.912783e-54 | -8.615850e-47 |
| Msa1072460 | Msa1365700 | 0.831733 | 1.412196e-55 | -8.615850e-47 |
| Msa1076570 | Msa1365700 | 0.814604 | 1.415574e-51 | -8.615850e-47 |
| Msa1089840 | Msa1365700 | -0.813933 | 1.991723e-51 | -8.615850e-47 |
| Msa0260950 | Msa1365700 | 0.868446 | 6.490940e-66 | -8.615850e-47 |
| Msa0288420 | Msa1365700 | 0.805193 | 1.502259e-49 | -8.615850e-47 |
| Msa0315440 | Msa1365700 | 0.804678 | 1.924629e-49 | -8.615850e-47 |
| Msa0315930 | Msa1365700 | 0.804539 | 2.058333e-49 | -8.615850e-47 |
| Msa1117520 | Msa1365700 | 0.827996 | 1.148965e-54 | -8.615850e-47 |
| Msa1143930 | Msa1365700 | 0.817857 | 2.652364e-52 | -8.615850e-47 |
| Msa1177260 | Msa1365700 | 0.805121 | 1.555617e-49 | -8.615850e-47 |
| Msa1191470 | Msa1365700 | 0.827613 | 1.420189e-54 | -8.615850e-47 |
| Msa1201430 | Msa1365700 | 0.843832 | 1.099104e-58 | -8.615850e-47 |
| Msa1217430 | Msa1365700 | 0.801706 | 7.933627e-49 | -8.615850e-47 |
| Msa0516510 | Msa1365700 | 0.818075 | 2.368111e-52 | -8.615850e-47 |
| Msa0528020 | Msa1365700 | 0.835040 | 2.114625e-56 | -8.615850e-47 |
| Msa0553220 | Msa1365700 | 0.881301 | 2.688958e-70 | -8.615850e-47 |
| Msa0555200 | Msa1365700 | -0.806594 | 7.625451e-50 | -8.615850e-47 |
| Msa0562300 | Msa1365700 | 0.811422 | 7.058882e-51 | -8.615850e-47 |
| Msa0563260 | Msa1365700 | 0.806219 | 9.149478e-50 | -8.615850e-47 |
| Msa0577990 | Msa1365700 | 0.816513 | 5.318891e-52 | -8.615850e-47 |
| Msa0586520 | Msa1365700 | 0.841703 | 4.046703e-58 | -8.615850e-47 |
| Msa0867050 | Msa1365700 | 0.812005 | 5.270825e-51 | -8.615850e-47 |
| Msa0899240 | Msa1365700 | 0.833766 | 4.417608e-56 | -8.615850e-47 |
| Msa0967650 | Msa1365700 | 0.837762 | 4.293130e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1365700 | MtrunA17_Chr3g0145841 | 96.252 | 507 | 12 | 4 | 1 | 503 | 1 | 504 | 0.0 | 990 |
| Msa1365700 | MtrunA17_Chr5g0433871 | 43.750 | 304 | 153 | 4 | 217 | 503 | 42 | 344 | 1.16e-60 | 207 |
| Msa1365700 | MtrunA17_Chr3g0109761 | 38.537 | 205 | 112 | 3 | 312 | 503 | 2 | 205 | 6.58e-38 | 142 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1365700 | AT3G03600.1 | 62.000 | 200 | 73 | 1 | 1 | 197 | 1 | 200 | 1.88e-85 | 263 |
| Msa1365700 | AT3G03250.3 | 43.092 | 304 | 155 | 4 | 217 | 503 | 41 | 343 | 1.59e-61 | 209 |
| Msa1365700 | AT3G03250.2 | 43.092 | 304 | 155 | 4 | 217 | 503 | 41 | 343 | 2.10e-61 | 209 |
| Msa1365700 | AT3G03250.1 | 43.092 | 304 | 155 | 4 | 217 | 503 | 41 | 343 | 2.31e-61 | 209 |
| Msa1365700 | AT5G17310.2 | 39.877 | 326 | 176 | 5 | 195 | 503 | 22 | 344 | 7.09e-57 | 197 |
| Msa1365700 | AT5G17310.5 | 41.633 | 245 | 126 | 3 | 276 | 503 | 20 | 264 | 4.00e-52 | 182 |
| Msa1365700 | AT5G17310.1 | 41.633 | 245 | 126 | 3 | 276 | 503 | 20 | 264 | 4.00e-52 | 182 |
| Msa1365700 | AT5G17310.3 | 41.803 | 244 | 125 | 3 | 277 | 503 | 16 | 259 | 7.87e-52 | 181 |
| Msa1365700 | AT5G17310.6 | 39.713 | 209 | 109 | 3 | 312 | 503 | 2 | 210 | 8.12e-38 | 142 |
| Msa1365700 | AT5G17310.4 | 39.713 | 209 | 109 | 3 | 312 | 503 | 2 | 210 | 8.12e-38 | 142 |
Find 114 sgRNAs with CRISPR-Local
Find 260 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGCCTCCGGAACAAATA+TGG | 0.222520 | tig0018384:+28522 | Msa1365700:CDS |
| TGAACAAACTAAGAATCTTT+TGG | 0.267833 | tig0018384:+28474 | Msa1365700:CDS |
| CACTCATGATAGTACTTTAA+AGG | 0.273991 | tig0018384:+28976 | Msa1365700:CDS |
| CTTTGAGCTTATGTCCAAAA+AGG | 0.277828 | tig0018384:+27885 | Msa1365700:CDS |
| AAATGGATTGTTTGAGCTTA+GGG | 0.306714 | tig0018384:-27580 | Msa1365700:intergenic |
| CAACTGTAAAACAAACAAAA+TGG | 0.318575 | tig0018384:-27597 | Msa1365700:intergenic |
| GTTGCGAGATCGAAACTTCT+TGG | 0.325917 | tig0018384:-27977 | Msa1365700:intergenic |
| GGAGAAGGAGAAGAGTAATT+TGG | 0.337508 | tig0018384:+28302 | Msa1365700:CDS |
| AAGCAATGCGGCTGAAAGTA+TGG | 0.339549 | tig0018384:-28137 | Msa1365700:intergenic |
| AATTGAACAGAGGGGTTAAC+AGG | 0.340725 | tig0018384:-28168 | Msa1365700:intergenic |
| AAAATGGATTGTTTGAGCTT+AGG | 0.344864 | tig0018384:-27581 | Msa1365700:intergenic |
| CATACAAATCAAAGTCTTAT+CGG | 0.349904 | tig0018384:-27776 | Msa1365700:intergenic |
| AGGAATTGTACCTTTGAGAT+TGG | 0.363802 | tig0018384:-31687 | Msa1365700:intergenic |
| GGAATTGTACCTTTGAGATT+GGG | 0.368076 | tig0018384:-31686 | Msa1365700:intergenic |
| TTGAAAACCCATATTTGTTC+CGG | 0.368093 | tig0018384:-28530 | Msa1365700:intergenic |
| TGGAACCCGGCTTCCGTACT+TGG | 0.371009 | tig0018384:-28930 | Msa1365700:intergenic |
| AAAGACTTACATCTTTATCT+TGG | 0.380478 | tig0018384:-31334 | Msa1365700:intergenic |
| AAATGCACCTTAAAATTCAT+TGG | 0.382777 | tig0018384:-30656 | Msa1365700:intergenic |
| TTGCGAGATCGAAACTTCTT+GGG | 0.402017 | tig0018384:-27976 | Msa1365700:intergenic |
| CTTCTCGAGAAGCAGTGTTT+TGG | 0.409136 | tig0018384:-28217 | Msa1365700:intergenic |
| TCCAATTCTCTCTGGCGTAC+TGG | 0.414072 | tig0018384:+27928 | Msa1365700:CDS |
| CATTTCAAAGATTACACTTA+CGG | 0.415466 | tig0018384:+27724 | Msa1365700:CDS |
| ACCAGTACGCCAGAGAGAAT+TGG | 0.424267 | tig0018384:-27929 | Msa1365700:intergenic |
| TCTTCCCTTGCTCGTCATAA+TGG | 0.433968 | tig0018384:+27820 | Msa1365700:CDS |
| ATATTCCGTTCACTAATGAT+AGG | 0.443745 | tig0018384:+30048 | Msa1365700:CDS |
| ATCGACAATGACGATGCAAT+CGG | 0.448666 | tig0018384:-28031 | Msa1365700:intergenic |
| GCTTCCGTACTTGGAGTTGA+GGG | 0.453661 | tig0018384:-28921 | Msa1365700:intergenic |
| CATGCCTCCGGAACAAATAT+GGG | 0.463448 | tig0018384:+28523 | Msa1365700:CDS |
| GTGGTGTACTACTACCTTGA+GGG | 0.464198 | tig0018384:-28377 | Msa1365700:intergenic |
| TGAGTTTAAGAACCATTAAG+AGG | 0.464580 | tig0018384:+31628 | Msa1365700:CDS |
| GAATCGACAAGAGCGACAAT+TGG | 0.465763 | tig0018384:-28102 | Msa1365700:intergenic |
| AGTAATTTGGCAGCTAAGCT+TGG | 0.466826 | tig0018384:+28315 | Msa1365700:CDS |
| CGCAACAAGAAACTCTGCTT+CGG | 0.474889 | tig0018384:+27994 | Msa1365700:CDS |
| ATAAATGTCTGACCTCAATC+TGG | 0.475272 | tig0018384:-28704 | Msa1365700:intergenic |
| CCTGGATTTATTATTGTCAC+AGG | 0.477736 | tig0018384:+30077 | Msa1365700:CDS |
| CTTCTTGGGACTGTTGCTGT+TGG | 0.480287 | tig0018384:-27962 | Msa1365700:intergenic |
| AACAGAGGGGTTAACAGGAA+TGG | 0.486093 | tig0018384:-28163 | Msa1365700:intergenic |
| ATTACTCTTCTCCTTCTCCT+TGG | 0.487507 | tig0018384:-28298 | Msa1365700:intergenic |
| CCATCTGATAATGTTAGCTC+TGG | 0.488544 | tig0018384:-29240 | Msa1365700:intergenic |
| TTGAAGCTCAATCATGCCTC+CGG | 0.491024 | tig0018384:+28511 | Msa1365700:CDS |
| GCCCCTCTTCCAATTCTCTC+TGG | 0.493204 | tig0018384:+27920 | Msa1365700:CDS |
| CCTGTGACAATAATAAATCC+AGG | 0.494692 | tig0018384:-30077 | Msa1365700:intergenic |
| ACAGAGGGGTTAACAGGAAT+GGG | 0.495983 | tig0018384:-28162 | Msa1365700:intergenic |
| AGATGCTGGACCGGCAGTAC+AGG | 0.497972 | tig0018384:+31810 | Msa1365700:CDS |
| AAAAGTGCGCACATCAATGC+TGG | 0.499284 | tig0018384:-29116 | Msa1365700:intergenic |
| TCAACTCCAAGTACGGAAGC+CGG | 0.499412 | tig0018384:+28924 | Msa1365700:CDS |
| TCGACAATGACGATGCAATC+GGG | 0.500294 | tig0018384:-28030 | Msa1365700:intergenic |
| GGCTTCCGTACTTGGAGTTG+AGG | 0.502670 | tig0018384:-28922 | Msa1365700:intergenic |
| AATGAAAATACCTGTACTGC+CGG | 0.504944 | tig0018384:-31820 | Msa1365700:intergenic |
| CGCCAGAGAGAATTGGAAGA+GGG | 0.506319 | tig0018384:-27922 | Msa1365700:intergenic |
| CTTGATCATTAACCAGATTG+AGG | 0.508702 | tig0018384:+28692 | Msa1365700:CDS |
| AGATAGACAAATTGAACAGA+GGG | 0.508931 | tig0018384:-28177 | Msa1365700:intergenic |
| CTTCTACAAGGAACAGATGC+TGG | 0.513459 | tig0018384:+31796 | Msa1365700:CDS |
| CAAGGGTGATATAGCATCGT+AGG | 0.516295 | tig0018384:-28352 | Msa1365700:intergenic |
| GCAACAGTTGTCACGCATAG+AGG | 0.518529 | tig0018384:-27463 | Msa1365700:intergenic |
| CAACTCCAAGTACGGAAGCC+GGG | 0.523495 | tig0018384:+28925 | Msa1365700:CDS |
| AATGATGAGTGGCGACTTGA+CGG | 0.524133 | tig0018384:-27705 | Msa1365700:intergenic |
| TCATAATCTAAGTAGGGTAA+AGG | 0.529652 | tig0018384:+29216 | Msa1365700:intron |
| ACAAGGAACAGATGCTGGAC+CGG | 0.539255 | tig0018384:+31801 | Msa1365700:CDS |
| AATTCTCTCTGGCGTACTGG+TGG | 0.544639 | tig0018384:+27931 | Msa1365700:CDS |
| ATGCAATCGGGAGGCTGAGT+AGG | 0.546108 | tig0018384:-28018 | Msa1365700:intergenic |
| AACTTCTTGACGATCATCTG+AGG | 0.551175 | tig0018384:+28262 | Msa1365700:CDS |
| GATTTCATCAAAGAGAGGAT+TGG | 0.553663 | tig0018384:-27863 | Msa1365700:intergenic |
| ACGGTGTGGACGGAGGTTGA+CGG | 0.556384 | tig0018384:-27506 | Msa1365700:intergenic |
| TAGACCCTCAACTCCAAGTA+CGG | 0.557315 | tig0018384:+28917 | Msa1365700:intron |
| GCTTTCATGTAGATCTGCAA+TGG | 0.567678 | tig0018384:+28641 | Msa1365700:intron |
| ACAACAAGCTGCCAAGGAGA+AGG | 0.571501 | tig0018384:+28287 | Msa1365700:CDS |
| TTAAGATCACATTAGACGAA+TGG | 0.572268 | tig0018384:-30631 | Msa1365700:intergenic |
| GGCGGCGTGATCAGAGAAAG+AGG | 0.573818 | tig0018384:-27485 | Msa1365700:intergenic |
| AAGGGTGATATAGCATCGTA+GGG | 0.575204 | tig0018384:-28351 | Msa1365700:intergenic |
| GAATTGTACCTTTGAGATTG+GGG | 0.576929 | tig0018384:-31685 | Msa1365700:intergenic |
| GAGGGAACAACAAGCTGCCA+AGG | 0.577303 | tig0018384:+28281 | Msa1365700:CDS |
| AAGACTTGTCACGGTGTGGA+CGG | 0.578991 | tig0018384:-27516 | Msa1365700:intergenic |
| TGGTGTACTACTACCTTGAG+GGG | 0.580656 | tig0018384:-28376 | Msa1365700:intergenic |
| ATCAGATGGACATAGCAGTA+AGG | 0.585945 | tig0018384:+29254 | Msa1365700:CDS |
| TCAAAGATTTCATCAAAGAG+AGG | 0.587278 | tig0018384:-27868 | Msa1365700:intergenic |
| TGATTGCCATTCTGTTGCGA+AGG | 0.589249 | tig0018384:-27747 | Msa1365700:intergenic |
| ACGCCAGAGAGAATTGGAAG+AGG | 0.589838 | tig0018384:-27923 | Msa1365700:intergenic |
| AGCGACCATTATGACGAGCA+AGG | 0.595760 | tig0018384:-27825 | Msa1365700:intergenic |
| ACTAATGATAGGTGGAACCC+TGG | 0.596499 | tig0018384:+30059 | Msa1365700:CDS |
| AAAACCCATATTTGTTCCGG+AGG | 0.599710 | tig0018384:-28527 | Msa1365700:intergenic |
| ATCACATTAGACGAATGGCT+TGG | 0.601415 | tig0018384:-30626 | Msa1365700:intergenic |
| TTACGGCCTTCGCAACAGAA+TGG | 0.602114 | tig0018384:+27741 | Msa1365700:CDS |
| AAATGCTATTGATTATTGCA+TGG | 0.611246 | tig0018384:+30492 | Msa1365700:CDS |
| TTCCGTTCACTAATGATAGG+TGG | 0.611432 | tig0018384:+30051 | Msa1365700:CDS |
| GCGACCATTATGACGAGCAA+GGG | 0.613460 | tig0018384:-27824 | Msa1365700:intergenic |
| CTGTGACAATAATAAATCCA+GGG | 0.621297 | tig0018384:-30076 | Msa1365700:intergenic |
| CTTAGCACAAATGCACACAT+TGG | 0.623840 | tig0018384:+27682 | Msa1365700:CDS |
| AATTGTACCTTTGAGATTGG+GGG | 0.632312 | tig0018384:-31684 | Msa1365700:intergenic |
| AGAGAACACAAGACTTGTCA+CGG | 0.633267 | tig0018384:-27525 | Msa1365700:intergenic |
| CAAGTCTTCTGTTATCGATG+AGG | 0.634448 | tig0018384:+28062 | Msa1365700:CDS |
| ACACAAGACTTGTCACGGTG+TGG | 0.635965 | tig0018384:-27520 | Msa1365700:intergenic |
| ACTTCTTGACGATCATCTGA+GGG | 0.639356 | tig0018384:+28263 | Msa1365700:CDS |
| TATGATCAAACTCTTCTACA+AGG | 0.640197 | tig0018384:+31784 | Msa1365700:CDS |
| TTCCACCTATCATTAGTGAA+CGG | 0.643911 | tig0018384:-30053 | Msa1365700:intergenic |
| CCAGAGCTAACATTATCAGA+TGG | 0.645741 | tig0018384:+29240 | Msa1365700:CDS |
| AGATGGACATAGCAGTAAGG+AGG | 0.647768 | tig0018384:+29257 | Msa1365700:CDS |
| TCTGCAATGGATATTTGTGA+CGG | 0.651282 | tig0018384:+28654 | Msa1365700:CDS |
| ACTACAGTCTCAAATTCGAA+CGG | 0.656094 | tig0018384:-31920 | Msa1365700:intergenic |
| AAGATAGACAAATTGAACAG+AGG | 0.659788 | tig0018384:-28178 | Msa1365700:intergenic |
| TGCTATTGATTATTGCATGG+AGG | 0.668962 | tig0018384:+30495 | Msa1365700:CDS |
| ACTTGTCACGGTGTGGACGG+AGG | 0.670585 | tig0018384:-27513 | Msa1365700:intergenic |
| GCCAGAGAGAATTGGAAGAG+GGG | 0.678738 | tig0018384:-27921 | Msa1365700:intergenic |
| TGTGATGAAGTGCGACAATG+TGG | 0.682299 | tig0018384:+30315 | Msa1365700:CDS |
| GTAATCTTTGAAATGATGAG+TGG | 0.693605 | tig0018384:-27716 | Msa1365700:intergenic |
| ATGCGGCTGAAAGTATGGAG+AGG | 0.695845 | tig0018384:-28132 | Msa1365700:intergenic |
| ACAATGACGATGCAATCGGG+AGG | 0.701583 | tig0018384:-28027 | Msa1365700:intergenic |
| GTGTGGACGGAGGTTGACGG+CGG | 0.710097 | tig0018384:-27503 | Msa1365700:intergenic |
| GATAGACAAATTGAACAGAG+GGG | 0.719867 | tig0018384:-28176 | Msa1365700:intergenic |
| GTGATGAAGTGCGACAATGT+GGG | 0.730135 | tig0018384:+30316 | Msa1365700:CDS |
| TGCAGGCATACATTTGACGA+TGG | 0.733353 | tig0018384:+30021 | Msa1365700:intron |
| GGTGTACTACTACCTTGAGG+GGG | 0.743686 | tig0018384:-28375 | Msa1365690:intergenic |
| CAGGAATGGGATAAGCAATG+CGG | 0.754863 | tig0018384:-28149 | Msa1365690:intergenic |
| AGGGTGATATAGCATCGTAG+GGG | 0.760959 | tig0018384:-28350 | Msa1365690:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATTATTGTAAATAGAAA+TGG | + | tig0018384:31009-31028 | Msa1365700:intron | 10.0% |
| !! | AAAAATGTAATACAAATATA+TGG | - | tig0018384:31376-31395 | Msa1365700:intergenic | 10.0% |
| !! | TAATACAATCAAATCAAATA+TGG | - | tig0018384:29027-29046 | Msa1365700:intergenic | 15.0% |
| !!! | TAATATTTTGCTTTAAGTTA+TGG | - | tig0018384:29777-29796 | Msa1365700:intergenic | 15.0% |
| !! | CTAAAATATTGTTTATTCAA+TGG | + | tig0018384:30383-30402 | Msa1365700:intron | 15.0% |
| !! | CTATTTACAATAATTTACAT+AGG | - | tig0018384:31006-31025 | Msa1365700:intergenic | 15.0% |
| !!! | CTTAAATTTGTAATTTTCAT+TGG | + | tig0018384:31049-31068 | Msa1365700:intron | 15.0% |
| !!! | CTTAAATTTGTAATTTTCAT+TGG | + | tig0018384:31049-31068 | Msa1365700:intron | 15.0% |
| !! | TTATTGAAAATGAATTGAAA+GGG | + | tig0018384:31739-31758 | Msa1365700:intron | 15.0% |
| !! | TTATACTTACATATCAGTTA+TGG | + | tig0018384:28723-28742 | Msa1365700:intron | 20.0% |
| !!! | TTGTAAAAATATTTTGCAAC+AGG | - | tig0018384:28776-28795 | Msa1365700:intergenic | 20.0% |
| !! | AAAACTAAAAAATCAGTCAA+TGG | - | tig0018384:28870-28889 | Msa1365700:intergenic | 20.0% |
| !!! | TTTGCATTTGTTCTATATTT+TGG | + | tig0018384:29146-29165 | Msa1365700:intron | 20.0% |
| !!! | TTGTTCTATATTTTGGATTT+TGG | + | tig0018384:29153-29172 | Msa1365700:intron | 20.0% |
| !! | AATACATCATAATCTAAGTA+GGG | + | tig0018384:29210-29229 | Msa1365700:intron | 20.0% |
| !! | CTAAATGTTTACTATTACTA+GGG | + | tig0018384:29375-29394 | Msa1365700:intron | 20.0% |
| !!! | AGTTTCTCATTTTATTTTCT+AGG | + | tig0018384:30276-30295 | Msa1365700:intron | 20.0% |
| !!! | GTTTCTCATTTTATTTTCTA+GGG | + | tig0018384:30277-30296 | Msa1365700:intron | 20.0% |
| !! | ATTATGATAAGACTATAAGA+AGG | - | tig0018384:30363-30382 | Msa1365700:intergenic | 20.0% |
| !! | CTATACAAAACTTATGAAAT+AGG | - | tig0018384:30945-30964 | Msa1365700:intergenic | 20.0% |
| !!! | CTATTTCATAAGTTTTGTAT+AGG | + | tig0018384:30943-30962 | Msa1365700:intron | 20.0% |
| !! | AATAATTTACATAGGAAACA+GGG | - | tig0018384:30998-31017 | Msa1365700:intergenic | 20.0% |
| !! | CTTATTGAAAATGAATTGAA+AGG | + | tig0018384:31738-31757 | Msa1365700:intron | 20.0% |
| !!! | GTTTTTTCAAAGACAAACAA+AGG | - | tig0018384:27561-27580 | None:intergenic | 25.0% |
| ! | CAACTGTAAAACAAACAAAA+TGG | - | tig0018384:27600-27619 | None:intergenic | 25.0% |
| ! | CATTTCAAAGATTACACTTA+CGG | + | tig0018384:27724-27743 | Msa1365700:CDS | 25.0% |
| !! | CATACAAATCAAAGTCTTAT+CGG | - | tig0018384:27779-27798 | Msa1365700:intergenic | 25.0% |
| !!! | TTCTTAGTTTGTTCAATATC+TGG | - | tig0018384:28469-28488 | Msa1365700:intergenic | 25.0% |
| !! | TGAACAAACTAAGAATCTTT+TGG | + | tig0018384:28474-28493 | Msa1365700:CDS | 25.0% |
| ! | AGACATAAAATAAGATATCG+AGG | - | tig0018384:28573-28592 | Msa1365700:intergenic | 25.0% |
| ! | TCTTTGTTAAAAATCAGCAA+TGG | - | tig0018384:28953-28972 | Msa1365700:intergenic | 25.0% |
| ! | ATCAAATATGGAAATCGAAA+TGG | - | tig0018384:29015-29034 | Msa1365700:intergenic | 25.0% |
| ! | AAACACTTCAATAATAGACA+AGG | - | tig0018384:29054-29073 | Msa1365700:intergenic | 25.0% |
| !! | AAATACTTTTCCAAAACCTA+TGG | - | tig0018384:29091-29110 | Msa1365700:intergenic | 25.0% |
| !!! | ATAGGTTTTGGAAAAGTATT+TGG | + | tig0018384:29090-29109 | Msa1365700:intron | 25.0% |
| !! | TAGATTATGATGTATTGATC+AGG | - | tig0018384:29206-29225 | Msa1365700:intergenic | 25.0% |
| ! | CAATACATCATAATCTAAGT+AGG | + | tig0018384:29209-29228 | Msa1365700:intron | 25.0% |
| ! | GCTAAATGTTTACTATTACT+AGG | + | tig0018384:29374-29393 | Msa1365700:intron | 25.0% |
| ! | ATATTACTACTACCTTCATA+TGG | + | tig0018384:29419-29438 | Msa1365700:intron | 25.0% |
| ! | AGAAGATAACTATTGTTTAC+TGG | + | tig0018384:29673-29692 | Msa1365700:intron | 25.0% |
| ! | AGTTATGGTAAAAAAAACTC+TGG | - | tig0018384:29762-29781 | Msa1365700:intergenic | 25.0% |
| ! | ATGTCAAAGGAATAAGTATT+TGG | + | tig0018384:29828-29847 | Msa1365700:intron | 25.0% |
| ! | TGTAAGAAATTTGCAAATCA+TGG | - | tig0018384:29956-29975 | Msa1365700:intergenic | 25.0% |
| ! | TGCACATGTATATAATTTGA+AGG | - | tig0018384:30005-30024 | Msa1365700:intergenic | 25.0% |
| ! | TTCAAATTATATACATGTGC+AGG | + | tig0018384:30004-30023 | Msa1365700:intron | 25.0% |
| ! | AGAAAAATGAGAGATATGAA+GGG | - | tig0018384:30127-30146 | Msa1365700:intergenic | 25.0% |
| !!! | TCATTTTATTTTCTAGGGAA+AGG | + | tig0018384:30282-30301 | Msa1365700:intron | 25.0% |
| ! | AATATTTAAGTCTCAATCCA+TGG | - | tig0018384:30417-30436 | Msa1365700:intergenic | 25.0% |
| ! | ATATCTACATAATGTAGTCA+AGG | - | tig0018384:30454-30473 | Msa1365700:intergenic | 25.0% |
| !! | AAATGCTATTGATTATTGCA+TGG | + | tig0018384:30492-30511 | Msa1365700:CDS | 25.0% |
| ! | AAGAAGAAAGAAAATGAATC+AGG | - | tig0018384:30589-30608 | Msa1365700:intergenic | 25.0% |
| !!! | TCTTTCTTCTTTCTTTTTTC+AGG | + | tig0018384:30598-30617 | Msa1365700:intron | 25.0% |
| !! | CTTAACTCCAATGAATTTTA+AGG | + | tig0018384:30649-30668 | Msa1365700:CDS | 25.0% |
| ! | AAATGCACCTTAAAATTCAT+TGG | - | tig0018384:30659-30678 | Msa1365700:intergenic | 25.0% |
| !!! | TGCTAAATTAATTAGTCTTG+AGG | + | tig0018384:30737-30756 | Msa1365700:intron | 25.0% |
| ! | AGAAATTCAAACATATGAAC+TGG | + | tig0018384:30816-30835 | Msa1365700:intron | 25.0% |
| ! | AACAGACATCTTTAAACTTA+CGG | + | tig0018384:30857-30876 | Msa1365700:intron | 25.0% |
| ! | ATAATTTACATAGGAAACAG+GGG | - | tig0018384:30997-31016 | Msa1365700:intergenic | 25.0% |
| ! | CAATAATTTACATAGGAAAC+AGG | - | tig0018384:30999-31018 | Msa1365700:intergenic | 25.0% |
| ! | ATTCTTGTCAAATGCTTATT+AGG | + | tig0018384:31218-31237 | Msa1365700:intron | 25.0% |
| ! | TCAAATGCTTATTAGGTAAT+GGG | + | tig0018384:31225-31244 | Msa1365700:intron | 25.0% |
| ! | AAAGACTTACATCTTTATCT+TGG | - | tig0018384:31337-31356 | Msa1365700:intergenic | 25.0% |
| !! | AATCTAGTAATTTTCTCGTT+TGG | + | tig0018384:31588-31607 | Msa1365700:intron | 25.0% |
| !! | GTTTTTCTTTTGCATAAAAC+AGG | + | tig0018384:31893-31912 | Msa1365700:exon | 25.0% |
| !! | AAATGGATTGTTTGAGCTTA+GGG | - | tig0018384:27583-27602 | None:intergenic | 30.0% |
| !! | AAAATGGATTGTTTGAGCTT+AGG | - | tig0018384:27584-27603 | None:intergenic | 30.0% |
| !! | GTAATCTTTGAAATGATGAG+TGG | - | tig0018384:27719-27738 | Msa1365700:intergenic | 30.0% |
| TCAAAGATTTCATCAAAGAG+AGG | - | tig0018384:27871-27890 | Msa1365700:intergenic | 30.0% | |
| AGATAGACAAATTGAACAGA+GGG | - | tig0018384:28180-28199 | Msa1365700:intergenic | 30.0% | |
| AAGATAGACAAATTGAACAG+AGG | - | tig0018384:28181-28200 | Msa1365700:intergenic | 30.0% | |
| TTGAAAACCCATATTTGTTC+CGG | - | tig0018384:28533-28552 | Msa1365700:intergenic | 30.0% | |
| TCGCATTATCATTTATTCCT+TGG | + | tig0018384:28749-28768 | Msa1365700:intron | 30.0% | |
| CGCATTATCATTTATTCCTT+GGG | + | tig0018384:28750-28769 | Msa1365700:intron | 30.0% | |
| GGCAACTAAGTATATATTGA+TGG | - | tig0018384:28849-28868 | Msa1365700:intergenic | 30.0% | |
| CACTCATGATAGTACTTTAA+AGG | + | tig0018384:28976-28995 | Msa1365700:CDS | 30.0% | |
| ACTTCAATAATAGACAAGGT+GGG | - | tig0018384:29050-29069 | Msa1365700:intergenic | 30.0% | |
| TTAACTTCATCATCTTCCAT+AGG | + | tig0018384:29072-29091 | Msa1365700:intron | 30.0% | |
| TCATAATCTAAGTAGGGTAA+AGG | + | tig0018384:29216-29235 | Msa1365700:intron | 30.0% | |
| CATGGTTTCGAACTAATTAA+AGG | - | tig0018384:29577-29596 | Msa1365700:intergenic | 30.0% | |
| !! | AGCGATTAACAATTTTGAAG+CGG | - | tig0018384:29615-29634 | Msa1365700:intergenic | 30.0% |
| AATTGTTAATCGCTCTAACA+TGG | + | tig0018384:29621-29640 | Msa1365700:intron | 30.0% | |
| CTTTGACATCTCAAATTTAC+GGG | - | tig0018384:29817-29836 | Msa1365700:intergenic | 30.0% | |
| CCTTTGACATCTCAAATTTA+CGG | - | tig0018384:29818-29837 | Msa1365700:intergenic | 30.0% | |
| ACAAAATTTACCATGCCTAA+CGG | + | tig0018384:29861-29880 | Msa1365700:intron | 30.0% | |
| ATAATGATAGTTTGACCGTT+AGG | - | tig0018384:29879-29898 | Msa1365700:intergenic | 30.0% | |
| ATATTCCGTTCACTAATGAT+AGG | + | tig0018384:30048-30067 | Msa1365700:CDS | 30.0% | |
| CTGTGACAATAATAAATCCA+GGG | - | tig0018384:30079-30098 | Msa1365700:intergenic | 30.0% | |
| GAGAAAAATGAGAGATATGA+AGG | - | tig0018384:30128-30147 | Msa1365700:intergenic | 30.0% | |
| AAGACTATAAGAAGGATACT+TGG | - | tig0018384:30355-30374 | Msa1365700:intergenic | 30.0% | |
| !!! | CTGCTACTTCACTTTTTTTA+AGG | + | tig0018384:30552-30571 | Msa1365700:intron | 30.0% |
| AGAAAATGAATCAGGAAACA+CGG | - | tig0018384:30581-30600 | Msa1365700:intergenic | 30.0% | |
| TTAAGATCACATTAGACGAA+TGG | - | tig0018384:30634-30653 | Msa1365700:intergenic | 30.0% | |
| ACAGACATCTTTAAACTTAC+GGG | + | tig0018384:30858-30877 | Msa1365700:intron | 30.0% | |
| TAGGAAACAAATTGAGAACA+AGG | - | tig0018384:30926-30945 | Msa1365700:intergenic | 30.0% | |
| TAATTTACATAGGAAACAGG+GGG | - | tig0018384:30996-31015 | Msa1365700:intergenic | 30.0% | |
| TTTGATCTGTGCTTAACATT+AGG | - | tig0018384:31079-31098 | Msa1365700:intergenic | 30.0% | |
| ! | AATTTTCATTGGAGATCCTA+AGG | + | tig0018384:31060-31079 | Msa1365700:intron | 30.0% |
| AGCATTTGACAAGAATTAGT+AGG | - | tig0018384:31214-31233 | Msa1365700:intergenic | 30.0% | |
| GTCAAATGCTTATTAGGTAA+TGG | + | tig0018384:31224-31243 | Msa1365700:intron | 30.0% | |
| CAAATGCTTATTAGGTAATG+GGG | + | tig0018384:31226-31245 | Msa1365700:intron | 30.0% | |
| TTTGTAATCTATGCAGCTTA+AGG | + | tig0018384:31298-31317 | Msa1365700:intron | 30.0% | |
| TCAACTACAATAAGTCAATC+AGG | - | tig0018384:31487-31506 | Msa1365700:intergenic | 30.0% | |
| ! | GATTGACTTATTGTAGTTGA+AGG | + | tig0018384:31487-31506 | Msa1365700:intron | 30.0% |
| ! | TGGTTTTCGTTCATTTTCTT+GGG | + | tig0018384:31554-31573 | Msa1365700:intron | 30.0% |
| TGAGTTTAAGAACCATTAAG+AGG | + | tig0018384:31628-31647 | Msa1365700:CDS | 30.0% | |
| AGAATGCTGGACTAATAATA+AGG | - | tig0018384:31710-31729 | Msa1365700:intergenic | 30.0% | |
| TATGATCAAACTCTTCTACA+AGG | + | tig0018384:31784-31803 | Msa1365700:CDS | 30.0% | |
| GATTTCATCAAAGAGAGGAT+TGG | - | tig0018384:27866-27885 | Msa1365700:intergenic | 35.0% | |
| CTTTGAGCTTATGTCCAAAA+AGG | + | tig0018384:27885-27904 | Msa1365700:CDS | 35.0% | |
| GATAGACAAATTGAACAGAG+GGG | - | tig0018384:28179-28198 | Msa1365700:intergenic | 35.0% | |
| GAGAGAAAGTAGAAAAGTTG+TGG | - | tig0018384:28399-28418 | Msa1365700:intergenic | 35.0% | |
| TCTGCAATGGATATTTGTGA+CGG | + | tig0018384:28654-28673 | Msa1365700:CDS | 35.0% | |
| CTTGATCATTAACCAGATTG+AGG | + | tig0018384:28692-28711 | Msa1365700:CDS | 35.0% | |
| ATAAATGTCTGACCTCAATC+TGG | - | tig0018384:28707-28726 | Msa1365700:intergenic | 35.0% | |
| TATGAGGTATATGCACAAAC+TGG | - | tig0018384:28804-28823 | Msa1365700:intergenic | 35.0% | |
| TGAGTTGCATATGTTGTATG+AGG | - | tig0018384:28820-28839 | Msa1365700:intergenic | 35.0% | |
| TAAAAATCAGCAATGGAACC+CGG | - | tig0018384:28946-28965 | Msa1365700:intergenic | 35.0% | |
| CACTTCAATAATAGACAAGG+TGG | - | tig0018384:29051-29070 | Msa1365700:intergenic | 35.0% | |
| ! | TCATCATCTTCCATAGGTTT+TGG | + | tig0018384:29078-29097 | Msa1365700:intron | 35.0% |
| CGGTGAATGTGAATATATCA+TGG | - | tig0018384:29595-29614 | Msa1365700:intergenic | 35.0% | |
| ! | CCGTAAATTTGAGATGTCAA+AGG | + | tig0018384:29815-29834 | Msa1365700:intron | 35.0% |
| TTCCACCTATCATTAGTGAA+CGG | - | tig0018384:30056-30075 | Msa1365700:intergenic | 35.0% | |
| CCTGTGACAATAATAAATCC+AGG | - | tig0018384:30080-30099 | Msa1365700:intergenic | 35.0% | |
| CCTGGATTTATTATTGTCAC+AGG | + | tig0018384:30077-30096 | Msa1365700:CDS | 35.0% | |
| TGCTCGTATATGTGCATATT+TGG | + | tig0018384:30221-30240 | Msa1365700:intron | 35.0% | |
| GCTCGTATATGTGCATATTT+GGG | + | tig0018384:30222-30241 | Msa1365700:intron | 35.0% | |
| ! | TGCTATTGATTATTGCATGG+AGG | + | tig0018384:30495-30514 | Msa1365700:CDS | 35.0% |
| AATGTTCAAGACACTGAATG+AGG | - | tig0018384:30692-30711 | Msa1365700:intergenic | 35.0% | |
| GTGTCTTGAACATTTGTTCT+AGG | + | tig0018384:30698-30717 | Msa1365700:intron | 35.0% | |
| TACTTGTATATACTGCCACA+GGG | - | tig0018384:30774-30793 | Msa1365700:intergenic | 35.0% | |
| !! | TGAACTGGAAAAGTATCATG+AGG | + | tig0018384:30831-30850 | Msa1365700:intron | 35.0% |
| GAAATGGAAACAGATCAAAG+AGG | + | tig0018384:31025-31044 | Msa1365700:intron | 35.0% | |
| ATGTTAAGCACAGATCAAAG+AGG | + | tig0018384:31080-31099 | Msa1365700:intron | 35.0% | |
| CTCAAAATGTGCTTAACCTT+AGG | - | tig0018384:31134-31153 | Msa1365700:intergenic | 35.0% | |
| !! | TATTAGGTAATGGGGTGATT+TGG | + | tig0018384:31234-31253 | Msa1365700:intron | 35.0% |
| ! | AATAAGCTCACAAGTCTTGT+TGG | - | tig0018384:31426-31445 | Msa1365700:intergenic | 35.0% |
| !! | CTGGTTTTCGTTCATTTTCT+TGG | + | tig0018384:31553-31572 | Msa1365700:intron | 35.0% |
| AGTGTCAAAAAGCCTCTTAA+TGG | - | tig0018384:31643-31662 | Msa1365700:intergenic | 35.0% | |
| !! | AATTGTACCTTTGAGATTGG+GGG | - | tig0018384:31687-31706 | Msa1365700:intergenic | 35.0% |
| !! | GAATTGTACCTTTGAGATTG+GGG | - | tig0018384:31688-31707 | Msa1365700:intergenic | 35.0% |
| !! | GGAATTGTACCTTTGAGATT+GGG | - | tig0018384:31689-31708 | Msa1365700:intergenic | 35.0% |
| !! | AGGAATTGTACCTTTGAGAT+TGG | - | tig0018384:31690-31709 | Msa1365700:intergenic | 35.0% |
| AATGAAAATACCTGTACTGC+CGG | - | tig0018384:31823-31842 | Msa1365700:intergenic | 35.0% | |
| ACTACAGTCTCAAATTCGAA+CGG | - | tig0018384:31923-31942 | Msa1365700:intergenic | 35.0% | |
| AGAGAACACAAGACTTGTCA+CGG | - | tig0018384:27528-27547 | None:intergenic | 40.0% | |
| CTTAGCACAAATGCACACAT+TGG | + | tig0018384:27682-27701 | Msa1365700:CDS | 40.0% | |
| GAGCTTATGTCCAAAAAGGT+TGG | + | tig0018384:27889-27908 | Msa1365700:CDS | 40.0% | |
| TTGCGAGATCGAAACTTCTT+GGG | - | tig0018384:27979-27998 | Msa1365700:intergenic | 40.0% | |
| ATCGACAATGACGATGCAAT+CGG | - | tig0018384:28034-28053 | Msa1365700:intergenic | 40.0% | |
| CAAGTCTTCTGTTATCGATG+AGG | + | tig0018384:28062-28081 | Msa1365700:CDS | 40.0% | |
| AATTGAACAGAGGGGTTAAC+AGG | - | tig0018384:28171-28190 | Msa1365700:intergenic | 40.0% | |
| AACTTCTTGACGATCATCTG+AGG | + | tig0018384:28262-28281 | Msa1365700:CDS | 40.0% | |
| ACTTCTTGACGATCATCTGA+GGG | + | tig0018384:28263-28282 | Msa1365700:CDS | 40.0% | |
| ATTACTCTTCTCCTTCTCCT+TGG | - | tig0018384:28301-28320 | Msa1365700:intergenic | 40.0% | |
| GGAGAAGGAGAAGAGTAATT+TGG | + | tig0018384:28302-28321 | Msa1365700:CDS | 40.0% | |
| AGTAATTTGGCAGCTAAGCT+TGG | + | tig0018384:28315-28334 | Msa1365700:CDS | 40.0% | |
| AAGGGTGATATAGCATCGTA+GGG | - | tig0018384:28354-28373 | Msa1365700:intergenic | 40.0% | |
| AAAACCCATATTTGTTCCGG+AGG | - | tig0018384:28530-28549 | Msa1365700:intergenic | 40.0% | |
| TATCGAGGAATGCTTACTTG+AGG | - | tig0018384:28558-28577 | Msa1365700:intergenic | 40.0% | |
| TTGCAGATCTACATGAAAGC+AGG | - | tig0018384:28641-28660 | Msa1365700:intergenic | 40.0% | |
| GCTTTCATGTAGATCTGCAA+TGG | + | tig0018384:28641-28660 | Msa1365700:intron | 40.0% | |
| ! | AATATTTTGCAACAGGCCCA+AGG | - | tig0018384:28769-28788 | Msa1365700:intergenic | 40.0% |
| ! | CCATCTGATAATGTTAGCTC+TGG | - | tig0018384:29243-29262 | Msa1365700:intergenic | 40.0% |
| CCAGAGCTAACATTATCAGA+TGG | + | tig0018384:29240-29259 | Msa1365700:CDS | 40.0% | |
| ATCAGATGGACATAGCAGTA+AGG | + | tig0018384:29254-29273 | Msa1365700:CDS | 40.0% | |
| TTCCGTTCACTAATGATAGG+TGG | + | tig0018384:30051-30070 | Msa1365700:CDS | 40.0% | |
| TTAAGTCTCAATCCATGGTC+AGG | - | tig0018384:30412-30431 | Msa1365700:intergenic | 40.0% | |
| ATCACATTAGACGAATGGCT+TGG | - | tig0018384:30629-30648 | Msa1365700:intergenic | 40.0% | |
| TTCAAGACACTGAATGAGGA+GGG | - | tig0018384:30688-30707 | Msa1365700:intergenic | 40.0% | |
| CTACTTGTATATACTGCCAC+AGG | - | tig0018384:30775-30794 | Msa1365700:intergenic | 40.0% | |
| ATCCATTGCACTTATCTGCA+TGG | + | tig0018384:31169-31188 | Msa1365700:intron | 40.0% | |
| CAAACATGTGAGTGAAATGC+TGG | + | tig0018384:31534-31553 | Msa1365700:intron | 40.0% | |
| ATAAGAGAGCAGTAGAATGC+TGG | - | tig0018384:31723-31742 | Msa1365700:intergenic | 40.0% | |
| TTGATCATAGTCATCCTCCT+GGG | - | tig0018384:31773-31792 | Msa1365700:intergenic | 40.0% | |
| TTTGATCATAGTCATCCTCC+TGG | - | tig0018384:31774-31793 | Msa1365700:intergenic | 40.0% | |
| AATGATGAGTGGCGACTTGA+CGG | - | tig0018384:27708-27727 | Msa1365700:intergenic | 45.0% | |
| TGATTGCCATTCTGTTGCGA+AGG | - | tig0018384:27750-27769 | Msa1365700:intergenic | 45.0% | |
| TCTTCCCTTGCTCGTCATAA+TGG | + | tig0018384:27820-27839 | Msa1365700:CDS | 45.0% | |
| ! | GCTGTAGCATCCAACCTTTT+TGG | - | tig0018384:27902-27921 | Msa1365700:intergenic | 45.0% |
| GTTGCGAGATCGAAACTTCT+TGG | - | tig0018384:27980-27999 | Msa1365700:intergenic | 45.0% | |
| CGCAACAAGAAACTCTGCTT+CGG | + | tig0018384:27994-28013 | Msa1365700:CDS | 45.0% | |
| TCGACAATGACGATGCAATC+GGG | - | tig0018384:28033-28052 | Msa1365700:intergenic | 45.0% | |
| GAATCGACAAGAGCGACAAT+TGG | - | tig0018384:28105-28124 | Msa1365700:intergenic | 45.0% | |
| AAGCAATGCGGCTGAAAGTA+TGG | - | tig0018384:28140-28159 | Msa1365700:intergenic | 45.0% | |
| CAGGAATGGGATAAGCAATG+CGG | - | tig0018384:28152-28171 | Msa1365700:intergenic | 45.0% | |
| ACAGAGGGGTTAACAGGAAT+GGG | - | tig0018384:28165-28184 | Msa1365700:intergenic | 45.0% | |
| AACAGAGGGGTTAACAGGAA+TGG | - | tig0018384:28166-28185 | Msa1365700:intergenic | 45.0% | |
| ! | CTTCTCGAGAAGCAGTGTTT+TGG | - | tig0018384:28220-28239 | Msa1365700:intergenic | 45.0% |
| AGGGTGATATAGCATCGTAG+GGG | - | tig0018384:28353-28372 | Msa1365700:intergenic | 45.0% | |
| CAAGGGTGATATAGCATCGT+AGG | - | tig0018384:28355-28374 | Msa1365700:intergenic | 45.0% | |
| TGGTGTACTACTACCTTGAG+GGG | - | tig0018384:28379-28398 | Msa1365700:intergenic | 45.0% | |
| GTGGTGTACTACTACCTTGA+GGG | - | tig0018384:28380-28399 | Msa1365700:intergenic | 45.0% | |
| TGTGGTGTACTACTACCTTG+AGG | - | tig0018384:28381-28400 | Msa1365700:intergenic | 45.0% | |
| TTGAAGCTCAATCATGCCTC+CGG | + | tig0018384:28511-28530 | Msa1365700:CDS | 45.0% | |
| TCATGCCTCCGGAACAAATA+TGG | + | tig0018384:28522-28541 | Msa1365700:CDS | 45.0% | |
| CATGCCTCCGGAACAAATAT+GGG | + | tig0018384:28523-28542 | Msa1365700:CDS | 45.0% | |
| TAGACCCTCAACTCCAAGTA+CGG | + | tig0018384:28917-28936 | Msa1365700:intron | 45.0% | |
| ! | AAAAGTGCGCACATCAATGC+TGG | - | tig0018384:29119-29138 | Msa1365700:intergenic | 45.0% |
| ! | TGATGTGCGCACTTTTAAGC+AGG | + | tig0018384:29123-29142 | Msa1365700:CDS | 45.0% |
| AGATGGACATAGCAGTAAGG+AGG | + | tig0018384:29257-29276 | Msa1365700:CDS | 45.0% | |
| GTATGCATCTAAGCTACTGC+TGG | - | tig0018384:29456-29475 | Msa1365700:intergenic | 45.0% | |
| GATAGTTTGACCGTTAGGCA+TGG | - | tig0018384:29874-29893 | Msa1365700:intergenic | 45.0% | |
| TGCAGGCATACATTTGACGA+TGG | + | tig0018384:30021-30040 | Msa1365700:intron | 45.0% | |
| ACTAATGATAGGTGGAACCC+TGG | + | tig0018384:30059-30078 | Msa1365700:CDS | 45.0% | |
| TGTGATGAAGTGCGACAATG+TGG | + | tig0018384:30315-30334 | Msa1365700:CDS | 45.0% | |
| GTGATGAAGTGCGACAATGT+GGG | + | tig0018384:30316-30335 | Msa1365700:CDS | 45.0% | |
| ATTCAATGGCTTCCTGACCA+TGG | + | tig0018384:30397-30416 | Msa1365700:intron | 45.0% | |
| GTGAAGTAGCAGTGTTACAC+AGG | - | tig0018384:30544-30563 | Msa1365700:intergenic | 45.0% | |
| GTTCAAGACACTGAATGAGG+AGG | - | tig0018384:30689-30708 | Msa1365700:intergenic | 45.0% | |
| ATACTGCCACAGGGTAAAAC+TGG | - | tig0018384:30765-30784 | Msa1365700:intergenic | 45.0% | |
| GACCATGCAGATAAGTGCAA+TGG | - | tig0018384:31174-31193 | Msa1365700:intergenic | 45.0% | |
| TGCACTTATCTGCATGGTCA+AGG | + | tig0018384:31175-31194 | Msa1365700:intron | 45.0% | |
| GAATTAGTAGGTCCTGACTC+AGG | - | tig0018384:31202-31221 | Msa1365700:intergenic | 45.0% | |
| TCTCGTTTGGTCCTCTGTAT+AGG | + | tig0018384:31601-31620 | Msa1365700:intron | 45.0% | |
| GTTTGGTCCTCTGTATAGGT+GGG | + | tig0018384:31605-31624 | Msa1365700:intron | 45.0% | |
| AAACTCACCCACCTATACAG+AGG | - | tig0018384:31615-31634 | Msa1365700:intergenic | 45.0% | |
| CTTCTACAAGGAACAGATGC+TGG | + | tig0018384:31796-31815 | Msa1365700:CDS | 45.0% | |
| GCAACAGTTGTCACGCATAG+AGG | - | tig0018384:27466-27485 | None:intergenic | 50.0% | |
| AAGACTTGTCACGGTGTGGA+CGG | - | tig0018384:27519-27538 | None:intergenic | 50.0% | |
| ACACAAGACTTGTCACGGTG+TGG | - | tig0018384:27523-27542 | None:intergenic | 50.0% | |
| TTACGGCCTTCGCAACAGAA+TGG | + | tig0018384:27741-27760 | Msa1365700:CDS | 50.0% | |
| GCGACCATTATGACGAGCAA+GGG | - | tig0018384:27827-27846 | Msa1365700:intergenic | 50.0% | |
| AGCGACCATTATGACGAGCA+AGG | - | tig0018384:27828-27847 | Msa1365700:intergenic | 50.0% | |
| GCCAGAGAGAATTGGAAGAG+GGG | - | tig0018384:27924-27943 | Msa1365700:intergenic | 50.0% | |
| CGCCAGAGAGAATTGGAAGA+GGG | - | tig0018384:27925-27944 | Msa1365700:intergenic | 50.0% | |
| ACGCCAGAGAGAATTGGAAG+AGG | - | tig0018384:27926-27945 | Msa1365700:intergenic | 50.0% | |
| TCCAATTCTCTCTGGCGTAC+TGG | + | tig0018384:27928-27947 | Msa1365700:CDS | 50.0% | |
| ACCAGTACGCCAGAGAGAAT+TGG | - | tig0018384:27932-27951 | Msa1365700:intergenic | 50.0% | |
| AATTCTCTCTGGCGTACTGG+TGG | + | tig0018384:27931-27950 | Msa1365700:CDS | 50.0% | |
| CTTCTTGGGACTGTTGCTGT+TGG | - | tig0018384:27965-27984 | Msa1365700:intergenic | 50.0% | |
| ACAATGACGATGCAATCGGG+AGG | - | tig0018384:28030-28049 | Msa1365700:intergenic | 50.0% | |
| ! | ATGCGGCTGAAAGTATGGAG+AGG | - | tig0018384:28135-28154 | Msa1365700:intergenic | 50.0% |
| ACAACAAGCTGCCAAGGAGA+AGG | + | tig0018384:28287-28306 | Msa1365700:CDS | 50.0% | |
| GGTGTACTACTACCTTGAGG+GGG | - | tig0018384:28378-28397 | Msa1365700:intergenic | 50.0% | |
| GCTTCCGTACTTGGAGTTGA+GGG | - | tig0018384:28924-28943 | Msa1365700:intergenic | 50.0% | |
| TCAACTCCAAGTACGGAAGC+CGG | + | tig0018384:28924-28943 | Msa1365700:CDS | 50.0% | |
| GCAACAGCTAGGCCATATGA+AGG | - | tig0018384:29434-29453 | Msa1365700:intergenic | 50.0% | |
| CGTTTGGTCCTCTGTATAGG+TGG | + | tig0018384:31604-31623 | Msa1365700:intron | 50.0% | |
| TTGAAAGGGTTACTGCTCCC+AGG | + | tig0018384:31753-31772 | Msa1365700:intron | 50.0% | |
| ACAAGGAACAGATGCTGGAC+CGG | + | tig0018384:31801-31820 | Msa1365700:CDS | 50.0% | |
| GCCCCTCTTCCAATTCTCTC+TGG | + | tig0018384:27920-27939 | Msa1365700:CDS | 55.0% | |
| ATGCAATCGGGAGGCTGAGT+AGG | - | tig0018384:28021-28040 | Msa1365700:intergenic | 55.0% | |
| GAGGGAACAACAAGCTGCCA+AGG | + | tig0018384:28281-28300 | Msa1365700:CDS | 55.0% | |
| ATATCACCCTTGCCCCCTCA+AGG | + | tig0018384:28363-28382 | Msa1365700:CDS | 55.0% | |
| CTACTACCTTGAGGGGGCAA+GGG | - | tig0018384:28372-28391 | Msa1365700:intergenic | 55.0% | |
| ACTACTACCTTGAGGGGGCA+AGG | - | tig0018384:28373-28392 | Msa1365700:intergenic | 55.0% | |
| GGCTTCCGTACTTGGAGTTG+AGG | - | tig0018384:28925-28944 | Msa1365700:intergenic | 55.0% | |
| CAACTCCAAGTACGGAAGCC+GGG | + | tig0018384:28925-28944 | Msa1365700:CDS | 55.0% | |
| AGCTACTGCTGGCAACAGCT+AGG | - | tig0018384:29445-29464 | Msa1365700:intergenic | 55.0% | |
| !! | GAGGTGCCAGTTTTACCCTG+TGG | + | tig0018384:30756-30775 | Msa1365700:intron | 55.0% |
| CATGGTCAAGGTCCTGAGTC+AGG | + | tig0018384:31187-31206 | Msa1365700:intron | 55.0% | |
| !! | CCTTTGAGATTGGGGGCATC+TGG | - | tig0018384:31680-31699 | Msa1365700:intergenic | 55.0% |
| CCAGATGCCCCCAATCTCAA+AGG | + | tig0018384:31677-31696 | Msa1365700:CDS | 55.0% | |
| AAAGGGTTACTGCTCCCAGG+AGG | + | tig0018384:31756-31775 | Msa1365700:intron | 55.0% | |
| GGCGGCGTGATCAGAGAAAG+AGG | - | tig0018384:27488-27507 | None:intergenic | 60.0% | |
| ACGGTGTGGACGGAGGTTGA+CGG | - | tig0018384:27509-27528 | None:intergenic | 60.0% | |
| ACTTGTCACGGTGTGGACGG+AGG | - | tig0018384:27516-27535 | None:intergenic | 60.0% | |
| TGGAACCCGGCTTCCGTACT+TGG | - | tig0018384:28933-28952 | Msa1365700:intergenic | 60.0% | |
| AGATGCTGGACCGGCAGTAC+AGG | + | tig0018384:31810-31829 | Msa1365700:CDS | 60.0% | |
| GTGTGGACGGAGGTTGACGG+CGG | - | tig0018384:27506-27525 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0018384 | gene | 27435 | 31962 | 27435 | ID=Msa1365700;Name=Msa1365700 |
| tig0018384 | mRNA | 27435 | 31962 | 27435 | ID=Msa1365700-mRNA-1;Parent=Msa1365700;Name=Msa1365700-mRNA-1;_AED=0.06;_eAED=0.06;_QI=214|1|1|1|1|1|14|53|526 |
| tig0018384 | exon | 27435 | 28384 | 27435 | ID=Msa1365700-mRNA-1:exon:14722;Parent=Msa1365700-mRNA-1 |
| tig0018384 | exon | 28470 | 28560 | 28470 | ID=Msa1365700-mRNA-1:exon:14723;Parent=Msa1365700-mRNA-1 |
| tig0018384 | exon | 28653 | 28713 | 28653 | ID=Msa1365700-mRNA-1:exon:14724;Parent=Msa1365700-mRNA-1 |
| tig0018384 | exon | 28920 | 28997 | 28920 | ID=Msa1365700-mRNA-1:exon:14725;Parent=Msa1365700-mRNA-1 |
| tig0018384 | exon | 29094 | 29144 | 29094 | ID=Msa1365700-mRNA-1:exon:14726;Parent=Msa1365700-mRNA-1 |
| tig0018384 | exon | 29231 | 29283 | 29231 | ID=Msa1365700-mRNA-1:exon:14727;Parent=Msa1365700-mRNA-1 |
| tig0018384 | exon | 30026 | 30098 | 30026 | ID=Msa1365700-mRNA-1:exon:14728;Parent=Msa1365700-mRNA-1 |
| tig0018384 | exon | 30298 | 30355 | 30298 | ID=Msa1365700-mRNA-1:exon:14729;Parent=Msa1365700-mRNA-1 |
| tig0018384 | exon | 30470 | 30516 | 30470 | ID=Msa1365700-mRNA-1:exon:14730;Parent=Msa1365700-mRNA-1 |
| tig0018384 | exon | 30620 | 30670 | 30620 | ID=Msa1365700-mRNA-1:exon:14731;Parent=Msa1365700-mRNA-1 |
| tig0018384 | exon | 31314 | 31346 | 31314 | ID=Msa1365700-mRNA-1:exon:14732;Parent=Msa1365700-mRNA-1 |
| tig0018384 | exon | 31503 | 31540 | 31503 | ID=Msa1365700-mRNA-1:exon:14733;Parent=Msa1365700-mRNA-1 |
| tig0018384 | exon | 31623 | 31698 | 31623 | ID=Msa1365700-mRNA-1:exon:14734;Parent=Msa1365700-mRNA-1 |
| tig0018384 | exon | 31775 | 31962 | 31775 | ID=Msa1365700-mRNA-1:exon:14735;Parent=Msa1365700-mRNA-1 |
| tig0018384 | five_prime_UTR | 27435 | 27648 | 27435 | ID=Msa1365700-mRNA-1:five_prime_utr;Parent=Msa1365700-mRNA-1 |
| tig0018384 | CDS | 27649 | 28384 | 27649 | ID=Msa1365700-mRNA-1:cds;Parent=Msa1365700-mRNA-1 |
| tig0018384 | CDS | 28470 | 28560 | 28470 | ID=Msa1365700-mRNA-1:cds;Parent=Msa1365700-mRNA-1 |
| tig0018384 | CDS | 28653 | 28713 | 28653 | ID=Msa1365700-mRNA-1:cds;Parent=Msa1365700-mRNA-1 |
| tig0018384 | CDS | 28920 | 28997 | 28920 | ID=Msa1365700-mRNA-1:cds;Parent=Msa1365700-mRNA-1 |
| tig0018384 | CDS | 29094 | 29144 | 29094 | ID=Msa1365700-mRNA-1:cds;Parent=Msa1365700-mRNA-1 |
| tig0018384 | CDS | 29231 | 29283 | 29231 | ID=Msa1365700-mRNA-1:cds;Parent=Msa1365700-mRNA-1 |
| tig0018384 | CDS | 30026 | 30098 | 30026 | ID=Msa1365700-mRNA-1:cds;Parent=Msa1365700-mRNA-1 |
| tig0018384 | CDS | 30298 | 30355 | 30298 | ID=Msa1365700-mRNA-1:cds;Parent=Msa1365700-mRNA-1 |
| tig0018384 | CDS | 30470 | 30516 | 30470 | ID=Msa1365700-mRNA-1:cds;Parent=Msa1365700-mRNA-1 |
| tig0018384 | CDS | 30620 | 30670 | 30620 | ID=Msa1365700-mRNA-1:cds;Parent=Msa1365700-mRNA-1 |
| tig0018384 | CDS | 31314 | 31346 | 31314 | ID=Msa1365700-mRNA-1:cds;Parent=Msa1365700-mRNA-1 |
| tig0018384 | CDS | 31503 | 31540 | 31503 | ID=Msa1365700-mRNA-1:cds;Parent=Msa1365700-mRNA-1 |
| tig0018384 | CDS | 31623 | 31698 | 31623 | ID=Msa1365700-mRNA-1:cds;Parent=Msa1365700-mRNA-1 |
| tig0018384 | CDS | 31775 | 31909 | 31775 | ID=Msa1365700-mRNA-1:cds;Parent=Msa1365700-mRNA-1 |
| tig0018384 | three_prime_UTR | 31910 | 31962 | 31910 | ID=Msa1365700-mRNA-1:three_prime_utr;Parent=Msa1365700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
