Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0001920 | XP_003621227.1 | 94.027 | 519 | 25 | 1 | 6 | 524 | 41 | 553 | 0.0 | 1008 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0001920 | sp|B9RXW0|TPS7_RICCO | 50.191 | 524 | 247 | 6 | 6 | 524 | 47 | 561 | 4.37e-178 | 516 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0001920 | Msa0610780 | 0.811724 | 6.067170e-51 | -8.615850e-47 |
Msa0001920 | Msa0698650 | 0.804540 | 2.056879e-49 | -8.615850e-47 |
Msa0001920 | Msa1007020 | 0.927270 | 1.484547e-91 | -8.615850e-47 |
Msa0001920 | Msa1048840 | 0.908319 | 1.946352e-81 | -8.615850e-47 |
Msa0001920 | Msa1136120 | 0.960728 | 6.928323e-119 | -8.615850e-47 |
Msa0001920 | Msa1295290 | 0.807871 | 4.090974e-50 | -8.615850e-47 |
Msa0001920 | Msa1295300 | 0.813814 | 2.115840e-51 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0001920 | MtrunA17_Chr7g0217361 | 96.013 | 301 | 12 | 0 | 224 | 524 | 8 | 308 | 0.0 | 608 |
Msa0001920 | MtrunA17_Chr7g0217351 | 90.222 | 225 | 16 | 1 | 3 | 227 | 55 | 273 | 2.75e-141 | 409 |
Msa0001920 | MtrunA17_Chr2g0310331 | 40.161 | 498 | 277 | 9 | 31 | 523 | 102 | 583 | 8.53e-122 | 370 |
Msa0001920 | MtrunA17_Chr4g0023911 | 40.079 | 509 | 289 | 6 | 19 | 523 | 82 | 578 | 1.09e-119 | 364 |
Msa0001920 | MtrunA17_Chr8g0357411 | 35.878 | 524 | 315 | 8 | 6 | 523 | 78 | 586 | 3.05e-108 | 335 |
Msa0001920 | MtrunA17_Chr2g0310401 | 40.046 | 437 | 247 | 7 | 92 | 523 | 3 | 429 | 5.44e-108 | 328 |
Msa0001920 | MtrunA17_Chr2g0323131 | 34.638 | 511 | 305 | 9 | 1 | 503 | 55 | 544 | 7.44e-94 | 296 |
Msa0001920 | MtrunA17_Chr2g0323151 | 37.526 | 477 | 270 | 8 | 34 | 503 | 4 | 459 | 2.17e-93 | 293 |
Msa0001920 | MtrunA17_Chr4g0042111 | 32.994 | 491 | 316 | 5 | 36 | 523 | 79 | 559 | 8.67e-85 | 273 |
Msa0001920 | MtrunA17_Chr2g0319041 | 32.669 | 502 | 321 | 8 | 29 | 523 | 63 | 554 | 1.63e-80 | 261 |
Msa0001920 | MtrunA17_Chr2g0319051 | 32.540 | 504 | 317 | 8 | 29 | 523 | 22 | 511 | 9.31e-77 | 251 |
Msa0001920 | MtrunA17_Chr6g0451711 | 29.495 | 495 | 336 | 5 | 32 | 523 | 70 | 554 | 6.08e-75 | 247 |
Msa0001920 | MtrunA17_Chr8g0336181 | 32.669 | 502 | 318 | 11 | 30 | 523 | 64 | 553 | 2.09e-74 | 245 |
Msa0001920 | MtrunA17_Chr4g0024691 | 29.198 | 524 | 351 | 6 | 7 | 523 | 48 | 558 | 5.24e-74 | 244 |
Msa0001920 | MtrunA17_Chr7g0236961 | 28.800 | 500 | 335 | 6 | 31 | 523 | 10 | 495 | 3.73e-73 | 240 |
Msa0001920 | MtrunA17_Chr7g0236991 | 28.462 | 520 | 350 | 7 | 12 | 523 | 45 | 550 | 5.30e-73 | 241 |
Msa0001920 | MtrunA17_Chr7g0237011 | 28.600 | 500 | 336 | 6 | 31 | 523 | 10 | 495 | 2.02e-72 | 238 |
Msa0001920 | MtrunA17_Chr7g0237001 | 28.269 | 520 | 351 | 7 | 12 | 523 | 45 | 550 | 2.70e-72 | 240 |
Msa0001920 | MtrunA17_Chr7g0237041 | 28.269 | 520 | 351 | 7 | 12 | 523 | 45 | 550 | 2.70e-72 | 240 |
Msa0001920 | MtrunA17_Chr7g0237081 | 28.269 | 520 | 351 | 7 | 12 | 523 | 45 | 550 | 2.70e-72 | 240 |
Msa0001920 | MtrunA17_Chr7g0237051 | 28.269 | 520 | 351 | 7 | 12 | 523 | 45 | 550 | 2.70e-72 | 240 |
Msa0001920 | MtrunA17_Chr6g0466051 | 28.785 | 535 | 352 | 6 | 8 | 523 | 26 | 550 | 2.20e-71 | 237 |
Msa0001920 | MtrunA17_Chr6g0465851 | 29.839 | 496 | 335 | 5 | 31 | 523 | 30 | 515 | 7.79e-71 | 235 |
Msa0001920 | MtrunA17_Chr6g0465911 | 28.785 | 535 | 352 | 6 | 8 | 523 | 26 | 550 | 8.68e-71 | 236 |
Msa0001920 | MtrunA17_Chr6g0465441 | 28.571 | 525 | 353 | 9 | 7 | 523 | 40 | 550 | 2.40e-69 | 232 |
Msa0001920 | MtrunA17_Chr3g0105071 | 31.489 | 524 | 340 | 10 | 7 | 523 | 43 | 554 | 2.44e-69 | 232 |
Msa0001920 | MtrunA17_Chr3g0082691 | 29.142 | 501 | 333 | 6 | 31 | 523 | 64 | 550 | 8.41e-69 | 231 |
Msa0001920 | MtrunA17_Chr5g0425371 | 29.102 | 512 | 341 | 7 | 19 | 522 | 52 | 549 | 9.14e-69 | 230 |
Msa0001920 | MtrunA17_Chr4g0048911 | 30.724 | 511 | 324 | 13 | 6 | 504 | 48 | 540 | 2.59e-68 | 229 |
Msa0001920 | MtrunA17_Chr5g0431571 | 30.723 | 498 | 329 | 7 | 31 | 523 | 60 | 546 | 6.53e-66 | 223 |
Msa0001920 | MtrunA17_Chr5g0431651 | 30.862 | 499 | 327 | 10 | 31 | 523 | 63 | 549 | 9.50e-65 | 219 |
Msa0001920 | MtrunA17_Chr4g0048921 | 30.952 | 504 | 316 | 13 | 31 | 522 | 84 | 567 | 5.66e-63 | 215 |
Msa0001920 | MtrunA17_Chr3g0108991 | 29.550 | 511 | 339 | 12 | 19 | 520 | 14 | 512 | 8.94e-63 | 214 |
Msa0001920 | MtrunA17_Chr3g0108951 | 29.550 | 511 | 339 | 12 | 19 | 520 | 14 | 512 | 8.94e-63 | 214 |
Msa0001920 | MtrunA17_Chr3g0108971 | 29.659 | 499 | 330 | 12 | 31 | 520 | 1 | 487 | 5.87e-62 | 211 |
Msa0001920 | MtrunA17_Chr3g0108981 | 30.279 | 502 | 324 | 14 | 31 | 520 | 1 | 488 | 1.18e-60 | 207 |
Msa0001920 | MtrunA17_Chr3g0108961 | 30.279 | 502 | 324 | 14 | 31 | 520 | 1 | 488 | 1.18e-60 | 207 |
Msa0001920 | MtrunA17_Chr3g0108941 | 29.939 | 491 | 324 | 11 | 19 | 499 | 14 | 494 | 1.42e-60 | 208 |
Msa0001920 | MtrunA17_Chr3g0109011 | 29.659 | 499 | 330 | 12 | 31 | 520 | 1 | 487 | 2.17e-60 | 207 |
Msa0001920 | MtrunA17_Chr3g0109001 | 29.102 | 512 | 341 | 11 | 19 | 520 | 14 | 513 | 3.66e-60 | 207 |
Msa0001920 | MtrunA17_Chr3g0099031 | 29.240 | 513 | 338 | 8 | 19 | 520 | 14 | 512 | 4.72e-59 | 204 |
Msa0001920 | MtrunA17_Chr2g0280581 | 29.817 | 493 | 318 | 10 | 21 | 499 | 20 | 498 | 7.38e-59 | 203 |
Msa0001920 | MtrunA17_Chr3g0105691 | 28.313 | 498 | 338 | 10 | 31 | 520 | 59 | 545 | 1.13e-58 | 203 |
Msa0001920 | MtrunA17_Chr3g0109031 | 28.571 | 511 | 344 | 12 | 19 | 520 | 14 | 512 | 1.28e-58 | 202 |
Msa0001920 | MtrunA17_Chr6g0477111 | 29.352 | 494 | 328 | 12 | 36 | 520 | 6 | 487 | 2.37e-58 | 201 |
Msa0001920 | MtrunA17_Chr3g0109021 | 28.376 | 511 | 345 | 12 | 19 | 520 | 14 | 512 | 9.68e-58 | 200 |
Msa0001920 | MtrunA17_Chr7g0236971 | 28.467 | 411 | 277 | 4 | 117 | 523 | 1 | 398 | 2.67e-57 | 196 |
Msa0001920 | MtrunA17_Chr8g0357231 | 35.521 | 259 | 162 | 3 | 267 | 523 | 1 | 256 | 2.89e-56 | 189 |
Msa0001920 | MtrunA17_Chr4g0008621 | 31.903 | 373 | 241 | 7 | 19 | 386 | 60 | 424 | 1.63e-55 | 192 |
Msa0001920 | MtrunA17_Chr6g0477121 | 30.633 | 395 | 258 | 9 | 111 | 499 | 27 | 411 | 4.53e-52 | 182 |
Msa0001920 | MtrunA17_Chr6g0465981 | 31.092 | 357 | 217 | 6 | 8 | 345 | 26 | 372 | 5.32e-49 | 173 |
Msa0001920 | MtrunA17_Chr6g0465871 | 31.092 | 357 | 217 | 6 | 8 | 345 | 26 | 372 | 5.32e-49 | 173 |
Msa0001920 | MtrunA17_Chr6g0466081 | 31.092 | 357 | 217 | 6 | 8 | 345 | 26 | 372 | 5.32e-49 | 173 |
Msa0001920 | MtrunA17_Chr6g0465931 | 33.123 | 317 | 199 | 5 | 32 | 345 | 31 | 337 | 5.96e-49 | 172 |
Msa0001920 | MtrunA17_Chr6g0466111 | 33.123 | 317 | 199 | 5 | 32 | 345 | 31 | 337 | 6.34e-49 | 172 |
Msa0001920 | MtrunA17_Chr7g0236951 | 30.599 | 317 | 207 | 4 | 31 | 344 | 10 | 316 | 1.30e-47 | 167 |
Msa0001920 | MtrunA17_Chr2g0319071 | 26.829 | 492 | 307 | 8 | 34 | 523 | 46 | 486 | 1.67e-47 | 172 |
Msa0001920 | MtrunA17_Chr7g0237031 | 30.284 | 317 | 208 | 4 | 31 | 344 | 10 | 316 | 7.10e-47 | 166 |
Msa0001920 | MtrunA17_Chr2g0319081 | 31.104 | 299 | 190 | 4 | 227 | 523 | 140 | 424 | 5.35e-37 | 142 |
Msa0001920 | MtrunA17_Chr5g0445511 | 30.924 | 249 | 159 | 3 | 113 | 359 | 2 | 239 | 6.78e-32 | 122 |
Msa0001920 | MtrunA17_Chr6g0466031 | 28.016 | 257 | 184 | 1 | 267 | 523 | 2 | 257 | 7.05e-30 | 117 |
Msa0001920 | MtrunA17_Chr8g0357221 | 35.176 | 199 | 114 | 4 | 31 | 226 | 104 | 290 | 2.62e-28 | 114 |
Msa0001920 | MtrunA17_Chr7g0237061 | 26.820 | 261 | 159 | 3 | 267 | 523 | 2 | 234 | 1.28e-27 | 110 |
Msa0001920 | MtrunA17_Chr2g0310121 | 24.545 | 440 | 286 | 15 | 25 | 435 | 267 | 689 | 5.16e-27 | 115 |
Msa0001920 | MtrunA17_Chr3g0101681 | 25.561 | 446 | 274 | 15 | 25 | 435 | 268 | 690 | 4.51e-24 | 106 |
Msa0001920 | MtrunA17_Chr2g0281651 | 31.020 | 245 | 157 | 7 | 202 | 442 | 43 | 279 | 1.65e-23 | 102 |
Msa0001920 | MtrunA17_Chr7g0237071 | 27.053 | 207 | 136 | 4 | 31 | 231 | 10 | 207 | 3.59e-19 | 86.7 |
Msa0001920 | MtrunA17_Chr7g0237021 | 26.744 | 172 | 118 | 2 | 356 | 523 | 2 | 169 | 1.36e-16 | 77.8 |
Msa0001920 | MtrunA17_Chr7g0236941 | 26.744 | 172 | 118 | 2 | 356 | 523 | 2 | 169 | 1.36e-16 | 77.8 |
Msa0001920 | MtrunA17_Chr5g0445501 | 26.786 | 168 | 123 | 0 | 356 | 523 | 2 | 169 | 2.31e-15 | 74.3 |
Msa0001920 | MtrunA17_Chr6g0466021 | 29.747 | 158 | 91 | 3 | 8 | 146 | 26 | 182 | 4.36e-14 | 71.2 |
Msa0001920 | MtrunA17_Chr7g0233861 | 28.462 | 130 | 84 | 1 | 170 | 299 | 38 | 158 | 1.15e-13 | 69.7 |
Msa0001920 | MtrunA17_Chr6g0465881 | 24.852 | 169 | 127 | 0 | 356 | 524 | 2 | 170 | 5.89e-13 | 67.4 |
Msa0001920 | MtrunA17_Chr6g0465941 | 24.852 | 169 | 127 | 0 | 356 | 524 | 2 | 170 | 6.74e-13 | 67.0 |
Msa0001920 | MtrunA17_Chr6g0466121 | 24.852 | 169 | 127 | 0 | 356 | 524 | 2 | 170 | 6.74e-13 | 67.0 |
Msa0001920 | MtrunA17_Chr6g0465991 | 24.852 | 169 | 127 | 0 | 356 | 524 | 2 | 170 | 6.74e-13 | 67.0 |
Msa0001920 | MtrunA17_Chr6g0466091 | 24.852 | 169 | 127 | 0 | 356 | 524 | 2 | 170 | 6.74e-13 | 67.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0001920 | AT4G16740.1 | 37.170 | 530 | 312 | 11 | 2 | 524 | 47 | 562 | 2.60e-113 | 347 |
Msa0001920 | AT3G25810.1 | 37.278 | 507 | 294 | 10 | 31 | 523 | 98 | 594 | 2.32e-111 | 343 |
Msa0001920 | AT4G16730.1 | 35.510 | 490 | 297 | 8 | 31 | 510 | 42 | 522 | 2.75e-106 | 328 |
Msa0001920 | AT3G25820.1 | 35.984 | 503 | 306 | 10 | 31 | 524 | 97 | 592 | 3.54e-105 | 327 |
Msa0001920 | AT3G25830.1 | 35.984 | 503 | 306 | 10 | 31 | 524 | 97 | 592 | 3.54e-105 | 327 |
Msa0001920 | AT4G16730.2 | 35.464 | 485 | 294 | 8 | 36 | 510 | 1 | 476 | 1.31e-104 | 322 |
Msa0001920 | AT2G24210.1 | 36.056 | 502 | 302 | 12 | 31 | 523 | 96 | 587 | 2.36e-98 | 309 |
Msa0001920 | AT1G61680.2 | 30.859 | 512 | 327 | 9 | 8 | 513 | 69 | 559 | 1.40e-71 | 238 |
Msa0001920 | AT1G61680.1 | 30.680 | 515 | 331 | 9 | 8 | 513 | 69 | 566 | 3.45e-71 | 238 |
Msa0001920 | AT4G16740.2 | 36.000 | 350 | 210 | 7 | 2 | 346 | 47 | 387 | 1.51e-66 | 221 |
Msa0001920 | AT3G25820.2 | 35.799 | 338 | 206 | 7 | 31 | 364 | 97 | 427 | 5.29e-65 | 218 |
Msa0001920 | AT5G23960.2 | 27.345 | 501 | 339 | 12 | 31 | 522 | 57 | 541 | 1.33e-55 | 195 |
Msa0001920 | AT5G23960.1 | 27.345 | 501 | 341 | 12 | 31 | 522 | 57 | 543 | 8.99e-55 | 193 |
Msa0001920 | AT1G70080.1 | 26.423 | 492 | 351 | 6 | 36 | 522 | 122 | 607 | 1.77e-54 | 194 |
Msa0001920 | AT1G31950.1 | 26.337 | 505 | 342 | 11 | 32 | 523 | 116 | 603 | 6.45e-54 | 192 |
Msa0001920 | AT3G29410.2 | 25.749 | 501 | 347 | 9 | 32 | 523 | 11 | 495 | 7.27e-54 | 189 |
Msa0001920 | AT1G31950.3 | 26.337 | 505 | 342 | 11 | 32 | 523 | 117 | 604 | 8.11e-54 | 192 |
Msa0001920 | AT3G14520.1 | 26.916 | 509 | 334 | 12 | 32 | 523 | 114 | 601 | 2.83e-53 | 190 |
Msa0001920 | AT3G29410.1 | 25.845 | 503 | 344 | 10 | 32 | 523 | 116 | 600 | 4.60e-53 | 190 |
Msa0001920 | AT3G14490.1 | 27.092 | 502 | 341 | 10 | 32 | 523 | 112 | 598 | 2.22e-50 | 182 |
Msa0001920 | AT4G16740.4 | 34.323 | 303 | 186 | 6 | 2 | 299 | 47 | 341 | 4.92e-50 | 176 |
Msa0001920 | AT4G16740.3 | 34.323 | 303 | 186 | 6 | 2 | 299 | 47 | 341 | 4.92e-50 | 176 |
Msa0001920 | AT3G14540.1 | 25.882 | 510 | 338 | 12 | 32 | 523 | 111 | 598 | 1.09e-49 | 180 |
Msa0001920 | AT1G33750.1 | 25.462 | 487 | 345 | 9 | 43 | 524 | 128 | 601 | 1.26e-47 | 175 |
Msa0001920 | AT1G48800.1 | 28.000 | 500 | 316 | 12 | 43 | 522 | 127 | 602 | 1.43e-45 | 169 |
Msa0001920 | AT3G25820.4 | 34.066 | 273 | 170 | 6 | 31 | 299 | 97 | 363 | 6.22e-45 | 163 |
Msa0001920 | AT3G25820.3 | 34.066 | 273 | 170 | 6 | 31 | 299 | 97 | 363 | 6.22e-45 | 163 |
Msa0001920 | AT4G13300.1 | 24.950 | 497 | 358 | 7 | 32 | 523 | 65 | 551 | 3.53e-43 | 161 |
Msa0001920 | AT1G31950.2 | 26.866 | 402 | 277 | 9 | 32 | 427 | 117 | 507 | 5.32e-42 | 158 |
Msa0001920 | AT5G44630.1 | 26.104 | 498 | 341 | 10 | 37 | 523 | 73 | 554 | 5.89e-42 | 158 |
Msa0001920 | AT3G29110.1 | 25.458 | 491 | 339 | 9 | 43 | 522 | 119 | 593 | 2.34e-41 | 157 |
Msa0001920 | AT3G32030.1 | 23.705 | 502 | 356 | 11 | 33 | 523 | 116 | 601 | 2.10e-40 | 154 |
Msa0001920 | AT4G13280.2 | 25.207 | 484 | 345 | 8 | 46 | 523 | 79 | 551 | 2.18e-40 | 154 |
Msa0001920 | AT4G20200.1 | 24.897 | 486 | 348 | 8 | 43 | 522 | 126 | 600 | 3.69e-39 | 151 |
Msa0001920 | AT3G14540.2 | 25.917 | 409 | 284 | 10 | 32 | 433 | 111 | 507 | 2.30e-38 | 147 |
Msa0001920 | AT4G20230.1 | 24.435 | 487 | 350 | 9 | 43 | 522 | 126 | 601 | 2.65e-38 | 148 |
Msa0001920 | AT4G20230.2 | 24.435 | 487 | 350 | 9 | 43 | 522 | 138 | 613 | 3.58e-38 | 148 |
Msa0001920 | AT1G48820.1 | 28.477 | 453 | 254 | 14 | 32 | 471 | 113 | 508 | 3.18e-36 | 142 |
Msa0001920 | AT5G48110.1 | 27.811 | 338 | 236 | 6 | 188 | 521 | 5 | 338 | 2.21e-35 | 135 |
Msa0001920 | AT3G29190.1 | 23.409 | 487 | 354 | 8 | 43 | 522 | 123 | 597 | 3.51e-35 | 139 |
Msa0001920 | AT4G20210.1 | 24.444 | 540 | 350 | 12 | 12 | 523 | 88 | 597 | 8.21e-35 | 138 |
Msa0001920 | AT4G13280.1 | 25.000 | 484 | 316 | 11 | 46 | 523 | 79 | 521 | 9.91e-34 | 134 |
Msa0001920 | AT4G15870.1 | 22.727 | 506 | 344 | 10 | 32 | 522 | 121 | 594 | 2.62e-33 | 134 |
Msa0001920 | AT2G23230.2 | 24.356 | 505 | 329 | 9 | 43 | 522 | 120 | 596 | 1.83e-32 | 131 |
Msa0001920 | AT2G23230.1 | 24.600 | 500 | 329 | 9 | 43 | 522 | 120 | 591 | 2.56e-32 | 131 |
Msa0001920 | AT1G61120.1 | 26.050 | 476 | 291 | 15 | 31 | 473 | 283 | 730 | 4.81e-30 | 125 |
Msa0001920 | AT1G66020.1 | 23.722 | 489 | 350 | 8 | 43 | 522 | 120 | 594 | 6.37e-30 | 124 |
Msa0001920 | AT1G79460.1 | 24.485 | 437 | 289 | 13 | 25 | 435 | 266 | 687 | 7.54e-23 | 103 |
Msa0001920 | AT1G66020.2 | 25.714 | 280 | 194 | 6 | 43 | 317 | 120 | 390 | 2.28e-22 | 100 |
Msa0001920 | AT4G02780.1 | 25.993 | 277 | 171 | 8 | 28 | 277 | 326 | 595 | 1.87e-14 | 77.0 |
Find 78 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCCCATACTCTTTATTTAAA+TGG | 0.139326 | 1_1:+3678701 | Msa0001920:CDS |
CATCTATTTCCTTCTCAAAA+TGG | 0.222339 | 1_1:-3676053 | None:intergenic |
AATGAAATTGCTTATGATAT+TGG | 0.222502 | 1_1:+3677989 | Msa0001920:CDS |
CACTAAATTTGTTGAAGTTT+AGG | 0.232104 | 1_1:-3676104 | None:intergenic |
TGGAAGTTCTTCAATTTCTT+TGG | 0.232814 | 1_1:-3677924 | None:intergenic |
CTTCTTGAGGCCTCGCATTT+AGG | 0.235209 | 1_1:+3676364 | Msa0001920:CDS |
CACCATTTAAATAAAGAGTA+TGG | 0.242038 | 1_1:-3678703 | None:intergenic |
TTTCCTCAAGGATTCATATT+TGG | 0.244055 | 1_1:-3677398 | None:intergenic |
ACTAAATTTGTTGAAGTTTA+GGG | 0.271334 | 1_1:-3676103 | None:intergenic |
TATGAATGGAGTAGAATTAA+TGG | 0.279603 | 1_1:-3678261 | None:intergenic |
TCCACACATATATGATGATT+TGG | 0.288442 | 1_1:+3678326 | Msa0001920:CDS |
AATGCATGGAAAAGAATTAA+TGG | 0.289780 | 1_1:+3678611 | Msa0001920:CDS |
GGTCCATGTCTTTGTTAGTT+TGG | 0.298719 | 1_1:-3676582 | None:intergenic |
TGCATCACCCCTTTCTCTTT+CGG | 0.326848 | 1_1:-3678507 | None:intergenic |
AAGCAAATCTTCATGTAATC+TGG | 0.341761 | 1_1:-3677944 | None:intergenic |
GAAAGCTTCATGTGTGCAAC+TGG | 0.344995 | 1_1:+3677361 | Msa0001920:CDS |
AATATGAATCCTTGAGGAAA+TGG | 0.354532 | 1_1:+3677401 | Msa0001920:CDS |
ATTCGGTTGTGCAATGATCT+TGG | 0.362231 | 1_1:+3678369 | Msa0001920:CDS |
TACCATGGTTTGATTTGAAA+TGG | 0.363499 | 1_1:+3676545 | Msa0001920:CDS |
AAAATTAGAGTTTGTTGATT+GGG | 0.365628 | 1_1:+3676008 | Msa0001920:CDS |
TATTTAAATGGTGATGGGTT+TGG | 0.370827 | 1_1:+3678713 | Msa0001920:CDS |
TTTAGAAGATGAAATAATCT+TGG | 0.375340 | 1_1:+3676387 | Msa0001920:CDS |
TGTCCAACTCTTGAACAAAA+TGG | 0.378832 | 1_1:-3675978 | None:intergenic |
TTCCATAAAAGCAACTTGAT+TGG | 0.394134 | 1_1:-3678642 | None:intergenic |
CTTTGGAGCTTCCTTCCCAT+TGG | 0.402644 | 1_1:+3676518 | Msa0001920:CDS |
ACTCTTTCAACAACCATGAT+AGG | 0.412829 | 1_1:-3676487 | None:intergenic |
TTCGGTTGTGCAATGATCTT+GGG | 0.427128 | 1_1:+3678370 | Msa0001920:CDS |
TGAAAGAGTGGTCCATGCTT+TGG | 0.429856 | 1_1:+3676501 | Msa0001920:CDS |
AATGCATGGATTACATCTTC+AGG | 0.430374 | 1_1:+3678237 | Msa0001920:CDS |
ACTCTTTATTTAAATGGTGA+TGG | 0.441733 | 1_1:+3678707 | Msa0001920:CDS |
TTCAAATATTCTTGCAACGA+TGG | 0.450046 | 1_1:-3678213 | None:intergenic |
CAAAGAATTAGTTCCTATCA+TGG | 0.450137 | 1_1:+3676474 | Msa0001920:CDS |
GAAGCAAAGTGGTACAAAAC+AGG | 0.461968 | 1_1:+3678183 | Msa0001920:CDS |
TTTAGGTGGTGGGAGAAACT+TGG | 0.465320 | 1_1:+3677298 | Msa0001920:intron |
ATCAATAGGCCGAAAGAGAA+AGG | 0.466163 | 1_1:+3678498 | Msa0001920:intron |
CTCTTTATTTAAATGGTGAT+GGG | 0.466974 | 1_1:+3678708 | Msa0001920:CDS |
CCTTCTCAAAATGGTTGGCA+AGG | 0.479679 | 1_1:-3676044 | None:intergenic |
CGGCTTCAGTTCTTCGAATG+AGG | 0.481721 | 1_1:-3677479 | None:intergenic |
TCAATAGGCCGAAAGAGAAA+GGG | 0.491702 | 1_1:+3678499 | Msa0001920:intron |
CTTTGGAATGCCGTTGTGAA+CGG | 0.493283 | 1_1:-3677499 | None:intergenic |
AAACTGTGGCAAAATATGAA+TGG | 0.494911 | 1_1:-3678275 | None:intergenic |
AAGAATATTTGAACAATGCA+TGG | 0.501699 | 1_1:+3678223 | Msa0001920:CDS |
ACAATGTGTCTCTCATCATT+CGG | 0.506273 | 1_1:+3678352 | Msa0001920:CDS |
GTTACCTTACCTAAAGAAAA+CGG | 0.507532 | 1_1:+3678036 | Msa0001920:CDS |
GAAATTGCTTATGATATTGG+AGG | 0.507730 | 1_1:+3677992 | Msa0001920:CDS |
ATGCATGGATTACATCTTCA+GGG | 0.512459 | 1_1:+3678238 | Msa0001920:CDS |
TATTTCCTTCTCAAAATGGT+TGG | 0.513900 | 1_1:-3676049 | None:intergenic |
AAACCATGGTACTCTCCAAT+GGG | 0.524495 | 1_1:-3676533 | None:intergenic |
ACCATTTAAATAAAGAGTAT+GGG | 0.538953 | 1_1:-3678702 | None:intergenic |
CTTCCCATTGGAGAGTACCA+TGG | 0.543361 | 1_1:+3676530 | Msa0001920:CDS |
CAAACCATGGTACTCTCCAA+TGG | 0.545676 | 1_1:-3676534 | None:intergenic |
AAGAGGTCAAAGAATTGTCC+AGG | 0.549308 | 1_1:+3676662 | Msa0001920:CDS |
CGTTCACAACGGCATTCCAA+AGG | 0.552185 | 1_1:+3677500 | Msa0001920:CDS |
AGATGAAATAATCTTGGATG+AGG | 0.563417 | 1_1:+3676393 | Msa0001920:CDS |
GGGAAGGAAGCTCCAAAGCA+TGG | 0.563491 | 1_1:-3676513 | None:intergenic |
AAAGCTTCATGTGTGCAACT+GGG | 0.566005 | 1_1:+3677362 | Msa0001920:CDS |
AAGACATTATAAACAATGCA+TGG | 0.567870 | 1_1:+3678597 | Msa0001920:CDS |
TTGTCAATTCAAGTAAAACA+TGG | 0.581120 | 1_1:-3676603 | None:intergenic |
TATCATGGTTGTTGAAAGAG+TGG | 0.581396 | 1_1:+3676489 | Msa0001920:CDS |
TTTAGTGAGCCATTTCCTCA+AGG | 0.592210 | 1_1:-3677410 | None:intergenic |
GAATGAAATGAACGTTTCAG+AGG | 0.598353 | 1_1:+3678553 | Msa0001920:CDS |
ATCTTCTAAACCTAAATGCG+AGG | 0.598605 | 1_1:-3676374 | None:intergenic |
AAGCAACTTCTTAGATGTGA+CGG | 0.605904 | 1_1:+3676303 | Msa0001920:CDS |
ATTTGATAATTCATAAACTG+TGG | 0.611543 | 1_1:-3678289 | None:intergenic |
ACCAAATCATCATATATGTG+TGG | 0.614177 | 1_1:-3678327 | None:intergenic |
ATTAAACTTTAACATAACGC+AGG | 0.618635 | 1_1:+3676627 | Msa0001920:CDS |
AGACCAAATATGAATCCTTG+AGG | 0.622902 | 1_1:+3677395 | Msa0001920:CDS |
CATGGTACTCTCCAATGGGA+AGG | 0.626881 | 1_1:-3676529 | None:intergenic |
TGTTGTGCAGTTAAACAAGT+GGG | 0.628163 | 1_1:+3675939 | Msa0001920:CDS |
CAATAGGCCGAAAGAGAAAG+GGG | 0.640612 | 1_1:+3678500 | Msa0001920:intron |
CATTATACGTGGAAGCAAAG+TGG | 0.642811 | 1_1:+3678172 | Msa0001920:CDS |
TGCCATTTCAAATCAAACCA+TGG | 0.657867 | 1_1:-3676547 | None:intergenic |
AAGCTTCATGTGTGCAACTG+GGG | 0.661508 | 1_1:+3677363 | Msa0001920:CDS |
AGATATTATAGAGCTTCTTG+AGG | 0.663851 | 1_1:+3676351 | Msa0001920:CDS |
ATACCAAACTAACAAAGACA+TGG | 0.669679 | 1_1:+3676579 | Msa0001920:CDS |
TTGTTGTGCAGTTAAACAAG+TGG | 0.674674 | 1_1:+3675938 | Msa0001920:CDS |
AGAACTGAAGCCGTTCACAA+CGG | 0.708833 | 1_1:+3677489 | Msa0001920:CDS |
CAATGATCTTGGGACCGCAG+TGG | 0.735626 | 1_1:+3678380 | Msa0001920:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATGATATTTAATTATCTAA+TGG | - | chr1_1:3676825-3676844 | None:intergenic | 10.0% |
!!! | AATATCATTGTATTTATTTT+AGG | + | chr1_1:3676836-3676855 | Msa0001920:intron | 10.0% |
!!! | ATATCATTGTATTTATTTTA+GGG | + | chr1_1:3676837-3676856 | Msa0001920:intron | 10.0% |
!!! | ATATCAAATTTCAAATTTTA+AGG | - | chr1_1:3677025-3677044 | None:intergenic | 10.0% |
!! | AAAAATAAAATAAACTACAT+AGG | + | chr1_1:3677102-3677121 | Msa0001920:intron | 10.0% |
!! | AAAATAAAATAAACTACATA+GGG | + | chr1_1:3677103-3677122 | Msa0001920:intron | 10.0% |
!! | TCACTATTAAATTAAATTAA+AGG | - | chr1_1:3677175-3677194 | None:intergenic | 10.0% |
!!! | TTAATTTAATAGTGAAATTT+TGG | + | chr1_1:3677180-3677199 | Msa0001920:intron | 10.0% |
!!! | GTTTTTTTTTTAATTGATAA+TGG | - | chr1_1:3677606-3677625 | None:intergenic | 10.0% |
!!! | CTAATTAATTTTTGGTTTTT+TGG | + | chr1_1:3676253-3676272 | Msa0001920:intron | 15.0% |
!!! | AAAATTATTTCTTCTTCTTT+TGG | - | chr1_1:3676748-3676767 | None:intergenic | 15.0% |
!!! | AAAAGAAGAAGAAATAATTT+TGG | + | chr1_1:3676747-3676766 | Msa0001920:intron | 15.0% |
!!! | TTTGAAATTTGATATCAATA+AGG | + | chr1_1:3677030-3677049 | Msa0001920:intron | 15.0% |
!! | ATAATAATAAGAAGAAATGT+AGG | - | chr1_1:3677865-3677884 | None:intergenic | 15.0% |
!! | TAATTTGATATACAATCAAT+AGG | + | chr1_1:3678484-3678503 | Msa0001920:intron | 15.0% |
!!! | AAAAATTAGAGTTTGTTGAT+TGG | + | chr1_1:3676007-3676026 | Msa0001920:CDS | 20.0% |
!!! | AAAATTAGAGTTTGTTGATT+GGG | + | chr1_1:3676008-3676027 | Msa0001920:CDS | 20.0% |
!!! | ACTAAATTTGTTGAAGTTTA+GGG | - | chr1_1:3676106-3676125 | None:intergenic | 20.0% |
!! | TAATTCAAATAGATAGTTAC+CGG | - | chr1_1:3676202-3676221 | None:intergenic | 20.0% |
!! | TTTAGAAGATGAAATAATCT+TGG | + | chr1_1:3676387-3676406 | Msa0001920:CDS | 20.0% |
!!! | TATATTTTTTACGAGCAAAA+GGG | - | chr1_1:3676877-3676896 | None:intergenic | 20.0% |
!!! | ATATATTTTTTACGAGCAAA+AGG | - | chr1_1:3676878-3676897 | None:intergenic | 20.0% |
!! | CAAAGAATCTTCAAATTATA+GGG | - | chr1_1:3676912-3676931 | None:intergenic | 20.0% |
!! | TCAAAGAATCTTCAAATTAT+AGG | - | chr1_1:3676913-3676932 | None:intergenic | 20.0% |
!!! | ATTTGAAGATTCTTTGATTT+TGG | + | chr1_1:3676916-3676935 | Msa0001920:intron | 20.0% |
!! | TATACGGTAAAAATTTATGA+AGG | - | chr1_1:3676943-3676962 | None:intergenic | 20.0% |
!! | ATCAATAAATATAGGATCAT+TGG | - | chr1_1:3677232-3677251 | None:intergenic | 20.0% |
!! | ATATTAGTAGTATATGTCAT+TGG | - | chr1_1:3677255-3677274 | None:intergenic | 20.0% |
!!! | AACATTCATATTTGTCTTTT+AGG | + | chr1_1:3677281-3677300 | Msa0001920:intron | 20.0% |
!! | TTTATAGAGAATAAAACCTT+TGG | - | chr1_1:3677519-3677538 | None:intergenic | 20.0% |
!!! | TTTTGGTTGAAATTTTTGTA+GGG | - | chr1_1:3677564-3677583 | None:intergenic | 20.0% |
!!! | ATTTTGGTTGAAATTTTTGT+AGG | - | chr1_1:3677565-3677584 | None:intergenic | 20.0% |
!!! | AATATACCATGAAGAAATTT+TGG | - | chr1_1:3677581-3677600 | None:intergenic | 20.0% |
!! | AATGAAATTGCTTATGATAT+TGG | + | chr1_1:3677989-3678008 | Msa0001920:CDS | 20.0% |
!!! | ATTTGATAATTCATAAACTG+TGG | - | chr1_1:3678292-3678311 | None:intergenic | 20.0% |
!! | TTTCTTGCTTGATTAAAAAA+TGG | - | chr1_1:3678668-3678687 | None:intergenic | 20.0% |
!!! | ACCATTTAAATAAAGAGTAT+GGG | - | chr1_1:3678705-3678724 | None:intergenic | 20.0% |
!!! | CACTAAATTTGTTGAAGTTT+AGG | - | chr1_1:3676107-3676126 | None:intergenic | 25.0% |
! | CCAAAAATTAATTAGTTCCT+AGG | - | chr1_1:3676248-3676267 | None:intergenic | 25.0% |
!! | CCTAGGAACTAATTAATTTT+TGG | + | chr1_1:3676245-3676264 | Msa0001920:intron | 25.0% |
!!! | CCAATTTTTAGCTAACATTT+TGG | - | chr1_1:3676419-3676438 | None:intergenic | 25.0% |
! | CCAAAATGTTAGCTAAAAAT+TGG | + | chr1_1:3676416-3676435 | Msa0001920:CDS | 25.0% |
! | TTGTCAATTCAAGTAAAACA+TGG | - | chr1_1:3676606-3676625 | None:intergenic | 25.0% |
! | ATTAAACTTTAACATAACGC+AGG | + | chr1_1:3676627-3676646 | Msa0001920:CDS | 25.0% |
!! | AAACAACTTATTTCTTTCTC+TGG | - | chr1_1:3676701-3676720 | None:intergenic | 25.0% |
! | TCTGTAATTTGAAGATTCTT+TGG | - | chr1_1:3677063-3677082 | None:intergenic | 25.0% |
! | TTATGTGCTTGTAATATTAG+CGG | - | chr1_1:3677140-3677159 | None:intergenic | 25.0% |
! | GTCATTGGATCAATAAATAT+AGG | - | chr1_1:3677240-3677259 | None:intergenic | 25.0% |
!! | ATTCATATTTGTCTTTTAGG+TGG | + | chr1_1:3677284-3677303 | Msa0001920:intron | 25.0% |
! | TTTCAACCAAAATTTCTTCA+TGG | + | chr1_1:3677572-3677591 | Msa0001920:intron | 25.0% |
! | AGATTGCAGTCATAAAAAAA+AGG | - | chr1_1:3677824-3677843 | None:intergenic | 25.0% |
!!! | ATTTTGTAAAGCATTATACG+TGG | + | chr1_1:3678161-3678180 | Msa0001920:CDS | 25.0% |
! | AAGAATATTTGAACAATGCA+TGG | + | chr1_1:3678223-3678242 | Msa0001920:CDS | 25.0% |
! | TATGAATGGAGTAGAATTAA+TGG | - | chr1_1:3678264-3678283 | None:intergenic | 25.0% |
! | AAGACATTATAAACAATGCA+TGG | + | chr1_1:3678597-3678616 | Msa0001920:CDS | 25.0% |
! | AATGCATGGAAAAGAATTAA+TGG | + | chr1_1:3678611-3678630 | Msa0001920:CDS | 25.0% |
! | CACCATTTAAATAAAGAGTA+TGG | - | chr1_1:3678706-3678725 | None:intergenic | 25.0% |
!! | ACTCTTTATTTAAATGGTGA+TGG | + | chr1_1:3678707-3678726 | Msa0001920:CDS | 25.0% |
!! | CTCTTTATTTAAATGGTGAT+GGG | + | chr1_1:3678708-3678727 | Msa0001920:CDS | 25.0% |
TATTTCCTTCTCAAAATGGT+TGG | - | chr1_1:3676052-3676071 | None:intergenic | 30.0% | |
CATCTATTTCCTTCTCAAAA+TGG | - | chr1_1:3676056-3676075 | None:intergenic | 30.0% | |
CATCAAATTGATCAAAACCT+AGG | + | chr1_1:3676228-3676247 | Msa0001920:intron | 30.0% | |
AGATATTATAGAGCTTCTTG+AGG | + | chr1_1:3676351-3676370 | Msa0001920:CDS | 30.0% | |
AGATGAAATAATCTTGGATG+AGG | + | chr1_1:3676393-3676412 | Msa0001920:CDS | 30.0% | |
CAAAGAATTAGTTCCTATCA+TGG | + | chr1_1:3676474-3676493 | Msa0001920:CDS | 30.0% | |
!! | TACCATGGTTTGATTTGAAA+TGG | + | chr1_1:3676545-3676564 | Msa0001920:CDS | 30.0% |
ATACCAAACTAACAAAGACA+TGG | + | chr1_1:3676579-3676598 | Msa0001920:CDS | 30.0% | |
!!! | TTTGACCTCTTTTTGAAGTT+TGG | - | chr1_1:3676653-3676672 | None:intergenic | 30.0% |
TCTGGCTAAAAATATATACC+TGG | - | chr1_1:3676683-3676702 | None:intergenic | 30.0% | |
!!! | GGCATATCATCGATTTTATA+CGG | - | chr1_1:3676959-3676978 | None:intergenic | 30.0% |
GTATAAAATCGATGATATGC+CGG | + | chr1_1:3676958-3676977 | Msa0001920:intron | 30.0% | |
TATAAAATCGATGATATGCC+GGG | + | chr1_1:3676959-3676978 | Msa0001920:intron | 30.0% | |
CAAAATTCGCTCAAATTACA+GGG | + | chr1_1:3676990-3677009 | Msa0001920:intron | 30.0% | |
AAAATTCGCTCAAATTACAG+GGG | + | chr1_1:3676991-3677010 | Msa0001920:intron | 30.0% | |
CTTGTAATATTAGCGGTTTA+TGG | - | chr1_1:3677133-3677152 | None:intergenic | 30.0% | |
!! | ATATTTGTCTTTTAGGTGGT+GGG | + | chr1_1:3677288-3677307 | Msa0001920:intron | 30.0% |
! | ACTTGTGTTTTGCAAGAAAT+AGG | + | chr1_1:3677332-3677351 | Msa0001920:CDS | 30.0% |
TTTCCTCAAGGATTCATATT+TGG | - | chr1_1:3677401-3677420 | None:intergenic | 30.0% | |
AATATGAATCCTTGAGGAAA+TGG | + | chr1_1:3677401-3677420 | Msa0001920:CDS | 30.0% | |
CTCATCACAAAATTTAACGA+CGG | - | chr1_1:3677685-3677704 | None:intergenic | 30.0% | |
CGACGGAAAAAAATTATTGA+CGG | - | chr1_1:3677732-3677751 | None:intergenic | 30.0% | |
GAAACAATCAAAATTAGCGA+CGG | - | chr1_1:3677749-3677768 | None:intergenic | 30.0% | |
! | CACTCATAACATTTGTTAAG+TGG | - | chr1_1:3677801-3677820 | None:intergenic | 30.0% |
ATCATGTTCATAAACACAGA+TGG | + | chr1_1:3677897-3677916 | Msa0001920:intron | 30.0% | |
TCATGTTCATAAACACAGAT+GGG | + | chr1_1:3677898-3677917 | Msa0001920:intron | 30.0% | |
TGGAAGTTCTTCAATTTCTT+TGG | - | chr1_1:3677927-3677946 | None:intergenic | 30.0% | |
AAGCAAATCTTCATGTAATC+TGG | - | chr1_1:3677947-3677966 | None:intergenic | 30.0% | |
GAAATTGCTTATGATATTGG+AGG | + | chr1_1:3677992-3678011 | Msa0001920:CDS | 30.0% | |
GTTACCTTACCTAAAGAAAA+CGG | + | chr1_1:3678036-3678055 | Msa0001920:CDS | 30.0% | |
! | TTATCCTCACATTTTTACAG+TGG | + | chr1_1:3678133-3678152 | Msa0001920:intron | 30.0% |
TTCAAATATTCTTGCAACGA+TGG | - | chr1_1:3678216-3678235 | None:intergenic | 30.0% | |
AAACTGTGGCAAAATATGAA+TGG | - | chr1_1:3678278-3678297 | None:intergenic | 30.0% | |
TCCACACATATATGATGATT+TGG | + | chr1_1:3678326-3678345 | Msa0001920:CDS | 30.0% | |
ACCAAATCATCATATATGTG+TGG | - | chr1_1:3678330-3678349 | None:intergenic | 30.0% | |
AACTTAAAAAGTTACCACTG+CGG | - | chr1_1:3678397-3678416 | None:intergenic | 30.0% | |
TTCCATAAAAGCAACTTGAT+TGG | - | chr1_1:3678645-3678664 | None:intergenic | 30.0% | |
! | GCCCATACTCTTTATTTAAA+TGG | + | chr1_1:3678701-3678720 | Msa0001920:CDS | 30.0% |
!! | TATTTAAATGGTGATGGGTT+TGG | + | chr1_1:3678713-3678732 | Msa0001920:CDS | 30.0% |
!!! | GTTTTTTGATATCTCGATCT+TGG | - | chr1_1:3678742-3678761 | None:intergenic | 30.0% |
TTGTTGTGCAGTTAAACAAG+TGG | + | chr1_1:3675938-3675957 | Msa0001920:CDS | 35.0% | |
TGTTGTGCAGTTAAACAAGT+GGG | + | chr1_1:3675939-3675958 | Msa0001920:CDS | 35.0% | |
TGTCCAACTCTTGAACAAAA+TGG | - | chr1_1:3675981-3676000 | None:intergenic | 35.0% | |
GTTGATTGGGTTCAAAAACT+AGG | + | chr1_1:3676021-3676040 | Msa0001920:CDS | 35.0% | |
! | CACTATGCTTCAAGCTTTTA+AGG | + | chr1_1:3676151-3676170 | Msa0001920:CDS | 35.0% |
!!! | TTCAAGCTTTTAAGGCAACA+TGG | + | chr1_1:3676159-3676178 | Msa0001920:CDS | 35.0% |
! | GGATACAATGTTTTTCCATC+CGG | + | chr1_1:3676180-3676199 | Msa0001920:CDS | 35.0% |
TCAAATAGATAGTTACCGGA+TGG | - | chr1_1:3676198-3676217 | None:intergenic | 35.0% | |
AAGCAACTTCTTAGATGTGA+CGG | + | chr1_1:3676303-3676322 | Msa0001920:CDS | 35.0% | |
ATCTTCTAAACCTAAATGCG+AGG | - | chr1_1:3676377-3676396 | None:intergenic | 35.0% | |
ACTCTTTCAACAACCATGAT+AGG | - | chr1_1:3676490-3676509 | None:intergenic | 35.0% | |
TATCATGGTTGTTGAAAGAG+TGG | + | chr1_1:3676489-3676508 | Msa0001920:CDS | 35.0% | |
! | TGCCATTTCAAATCAAACCA+TGG | - | chr1_1:3676550-3676569 | None:intergenic | 35.0% |
ATAAAATCGATGATATGCCG+GGG | + | chr1_1:3676960-3676979 | Msa0001920:intron | 35.0% | |
! | CCTGTAATTTGAGCGAATTT+TGG | - | chr1_1:3676992-3677011 | None:intergenic | 35.0% |
CCAAAATTCGCTCAAATTAC+AGG | + | chr1_1:3676989-3677008 | Msa0001920:intron | 35.0% | |
!! | CATATTTGTCTTTTAGGTGG+TGG | + | chr1_1:3677287-3677306 | Msa0001920:intron | 35.0% |
! | GTGTTTTGCAAGAAATAGGT+TGG | + | chr1_1:3677336-3677355 | Msa0001920:CDS | 35.0% |
AGACCAAATATGAATCCTTG+AGG | + | chr1_1:3677395-3677414 | Msa0001920:CDS | 35.0% | |
!! | CTAGCAAGAGAATTTTAGAG+AGG | + | chr1_1:3677631-3677650 | Msa0001920:intron | 35.0% |
! | AGTACCGTTTTCTTTAGGTA+AGG | - | chr1_1:3678043-3678062 | None:intergenic | 35.0% |
! | GCATTAGTACCGTTTTCTTT+AGG | - | chr1_1:3678048-3678067 | None:intergenic | 35.0% |
CAATCCACTGTAAAAATGTG+AGG | - | chr1_1:3678140-3678159 | None:intergenic | 35.0% | |
! | AATGCATGGATTACATCTTC+AGG | + | chr1_1:3678237-3678256 | Msa0001920:CDS | 35.0% |
! | ATGCATGGATTACATCTTCA+GGG | + | chr1_1:3678238-3678257 | Msa0001920:CDS | 35.0% |
ACAATGTGTCTCTCATCATT+CGG | + | chr1_1:3678352-3678371 | Msa0001920:CDS | 35.0% | |
GAATGAAATGAACGTTTCAG+AGG | + | chr1_1:3678553-3678572 | Msa0001920:CDS | 35.0% | |
!!! | CTCCAATCAAGTTGCTTTTA+TGG | + | chr1_1:3678640-3678659 | Msa0001920:CDS | 35.0% |
!! | ACGCCATTTTGTTCAAGAGT+TGG | + | chr1_1:3675975-3675994 | Msa0001920:CDS | 40.0% |
AAACCATGGTACTCTCCAAT+GGG | - | chr1_1:3676536-3676555 | None:intergenic | 40.0% | |
GGTCCATGTCTTTGTTAGTT+TGG | - | chr1_1:3676585-3676604 | None:intergenic | 40.0% | |
AAGAGGTCAAAGAATTGTCC+AGG | + | chr1_1:3676662-3676681 | Msa0001920:CDS | 40.0% | |
TAAAATCGATGATATGCCGG+GGG | + | chr1_1:3676961-3676980 | Msa0001920:intron | 40.0% | |
AAAGCTTCATGTGTGCAACT+GGG | + | chr1_1:3677362-3677381 | Msa0001920:CDS | 40.0% | |
TTTAGTGAGCCATTTCCTCA+AGG | - | chr1_1:3677413-3677432 | None:intergenic | 40.0% | |
CATTATACGTGGAAGCAAAG+TGG | + | chr1_1:3678172-3678191 | Msa0001920:CDS | 40.0% | |
GAAGCAAAGTGGTACAAAAC+AGG | + | chr1_1:3678183-3678202 | Msa0001920:CDS | 40.0% | |
ATTCGGTTGTGCAATGATCT+TGG | + | chr1_1:3678369-3678388 | Msa0001920:CDS | 40.0% | |
TTCGGTTGTGCAATGATCTT+GGG | + | chr1_1:3678370-3678389 | Msa0001920:CDS | 40.0% | |
ATCAATAGGCCGAAAGAGAA+AGG | + | chr1_1:3678498-3678517 | Msa0001920:intron | 40.0% | |
TCAATAGGCCGAAAGAGAAA+GGG | + | chr1_1:3678499-3678518 | Msa0001920:intron | 40.0% | |
CCTTCTCAAAATGGTTGGCA+AGG | - | chr1_1:3676047-3676066 | None:intergenic | 45.0% | |
!! | CCTTGCCAACCATTTTGAGA+AGG | + | chr1_1:3676044-3676063 | Msa0001920:CDS | 45.0% |
TGAAAGAGTGGTCCATGCTT+TGG | + | chr1_1:3676501-3676520 | Msa0001920:CDS | 45.0% | |
CAAACCATGGTACTCTCCAA+TGG | - | chr1_1:3676537-3676556 | None:intergenic | 45.0% | |
GCAGGCCAAACTTCAAAAAG+AGG | + | chr1_1:3676645-3676664 | Msa0001920:CDS | 45.0% | |
!!! | GCGAATTTTGGTTTAACCCC+CGG | - | chr1_1:3676980-3676999 | None:intergenic | 45.0% |
!! | TTTAGGTGGTGGGAGAAACT+TGG | + | chr1_1:3677298-3677317 | Msa0001920:intron | 45.0% |
GAAAGCTTCATGTGTGCAAC+TGG | + | chr1_1:3677361-3677380 | Msa0001920:CDS | 45.0% | |
AAGCTTCATGTGTGCAACTG+GGG | + | chr1_1:3677363-3677382 | Msa0001920:CDS | 45.0% | |
AGAACTGAAGCCGTTCACAA+CGG | + | chr1_1:3677489-3677508 | Msa0001920:CDS | 45.0% | |
!! | CTTTGGAATGCCGTTGTGAA+CGG | - | chr1_1:3677502-3677521 | None:intergenic | 45.0% |
CAATAGGCCGAAAGAGAAAG+GGG | + | chr1_1:3678500-3678519 | Msa0001920:intron | 45.0% | |
TGCATCACCCCTTTCTCTTT+CGG | - | chr1_1:3678510-3678529 | None:intergenic | 45.0% | |
CTTCTTGAGGCCTCGCATTT+AGG | + | chr1_1:3676364-3676383 | Msa0001920:CDS | 50.0% | |
!! | CTTTGGAGCTTCCTTCCCAT+TGG | + | chr1_1:3676518-3676537 | Msa0001920:CDS | 50.0% |
CATGGTACTCTCCAATGGGA+AGG | - | chr1_1:3676532-3676551 | None:intergenic | 50.0% | |
!! | CTTCCCATTGGAGAGTACCA+TGG | + | chr1_1:3676530-3676549 | Msa0001920:CDS | 50.0% |
CGGCTTCAGTTCTTCGAATG+AGG | - | chr1_1:3677482-3677501 | None:intergenic | 50.0% | |
CGTTCACAACGGCATTCCAA+AGG | + | chr1_1:3677500-3677519 | Msa0001920:CDS | 50.0% | |
GGGAAGGAAGCTCCAAAGCA+TGG | - | chr1_1:3676516-3676535 | None:intergenic | 55.0% | |
CAATGATCTTGGGACCGCAG+TGG | + | chr1_1:3678380-3678399 | Msa0001920:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_1 | gene | 3675913 | 3678793 | 3675913 | ID=Msa0001920;Name=Msa0001920 |
chr1_1 | mRNA | 3675913 | 3678793 | 3675913 | ID=Msa0001920-mRNA-1;Parent=Msa0001920;Name=Msa0001920-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0|0|0|1|1|1|6|0|524 |
chr1_1 | exon | 3675913 | 3676201 | 3675913 | ID=Msa0001920-mRNA-1:exon:1084;Parent=Msa0001920-mRNA-1 |
chr1_1 | exon | 3676296 | 3676683 | 3676296 | ID=Msa0001920-mRNA-1:exon:1085;Parent=Msa0001920-mRNA-1 |
chr1_1 | exon | 3677303 | 3677521 | 3677303 | ID=Msa0001920-mRNA-1:exon:1086;Parent=Msa0001920-mRNA-1 |
chr1_1 | exon | 3677916 | 3678057 | 3677916 | ID=Msa0001920-mRNA-1:exon:1087;Parent=Msa0001920-mRNA-1 |
chr1_1 | exon | 3678153 | 3678401 | 3678153 | ID=Msa0001920-mRNA-1:exon:1088;Parent=Msa0001920-mRNA-1 |
chr1_1 | exon | 3678506 | 3678793 | 3678506 | ID=Msa0001920-mRNA-1:exon:1089;Parent=Msa0001920-mRNA-1 |
chr1_1 | CDS | 3675913 | 3676201 | 3675913 | ID=Msa0001920-mRNA-1:cds;Parent=Msa0001920-mRNA-1 |
chr1_1 | CDS | 3676296 | 3676683 | 3676296 | ID=Msa0001920-mRNA-1:cds;Parent=Msa0001920-mRNA-1 |
chr1_1 | CDS | 3677303 | 3677521 | 3677303 | ID=Msa0001920-mRNA-1:cds;Parent=Msa0001920-mRNA-1 |
chr1_1 | CDS | 3677916 | 3678057 | 3677916 | ID=Msa0001920-mRNA-1:cds;Parent=Msa0001920-mRNA-1 |
chr1_1 | CDS | 3678153 | 3678401 | 3678153 | ID=Msa0001920-mRNA-1:cds;Parent=Msa0001920-mRNA-1 |
chr1_1 | CDS | 3678506 | 3678793 | 3678506 | ID=Msa0001920-mRNA-1:cds;Parent=Msa0001920-mRNA-1 |
Gene Sequence |
Protein sequence |