AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1136120

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1136120 MtrunA17_Chr7g0217361 96.346 301 11 0 275 575 8 308 0.0 610
Msa1136120 MtrunA17_Chr7g0217351 89.286 224 18 1 55 278 56 273 1.52e-138 404
Msa1136120 MtrunA17_Chr2g0310331 38.938 565 306 11 15 574 53 583 1.99e-130 394
Msa1136120 MtrunA17_Chr4g0023911 38.743 573 313 7 8 574 38 578 2.55e-128 388
Msa1136120 MtrunA17_Chr8g0357411 35.512 566 325 9 15 574 55 586 1.47e-115 355
Msa1136120 MtrunA17_Chr2g0310401 40.275 437 246 7 143 574 3 429 2.62e-107 328
Msa1136120 MtrunA17_Chr2g0323131 34.646 508 303 9 55 554 58 544 1.18e-92 295
Msa1136120 MtrunA17_Chr2g0323151 37.317 477 271 8 85 554 4 459 2.66e-92 291
Msa1136120 MtrunA17_Chr4g0042111 31.802 566 352 7 15 574 22 559 2.12e-91 291
Msa1136120 MtrunA17_Chr2g0319041 32.168 572 352 15 12 574 10 554 2.06e-83 271
Msa1136120 MtrunA17_Chr4g0024691 29.094 574 369 8 9 574 15 558 5.78e-78 256
Msa1136120 MtrunA17_Chr6g0451711 29.021 572 373 9 9 574 10 554 3.94e-77 254
Msa1136120 MtrunA17_Chr7g0236991 27.951 576 384 7 3 574 2 550 8.05e-77 253
Msa1136120 MtrunA17_Chr6g0466051 29.066 578 375 9 3 574 2 550 4.79e-76 251
Msa1136120 MtrunA17_Chr7g0237001 27.778 576 385 7 3 574 2 550 5.00e-76 251
Msa1136120 MtrunA17_Chr7g0237041 27.778 576 385 7 3 574 2 550 5.00e-76 251
Msa1136120 MtrunA17_Chr7g0237081 27.778 576 385 7 3 574 2 550 5.00e-76 251
Msa1136120 MtrunA17_Chr7g0237051 27.778 576 385 7 3 574 2 550 5.00e-76 251
Msa1136120 MtrunA17_Chr2g0319051 32.669 502 319 8 80 574 22 511 5.54e-76 250
Msa1136120 MtrunA17_Chr6g0465911 29.066 578 375 9 3 574 2 550 2.51e-75 249
Msa1136120 MtrunA17_Chr6g0465441 28.596 584 370 12 3 574 2 550 4.86e-75 248
Msa1136120 MtrunA17_Chr8g0336181 31.107 569 355 16 15 574 13 553 4.95e-75 249
Msa1136120 MtrunA17_Chr3g0105071 30.890 573 357 13 11 574 12 554 2.98e-73 244
Msa1136120 MtrunA17_Chr7g0236961 28.831 496 340 4 82 574 10 495 9.11e-73 241
Msa1136120 MtrunA17_Chr7g0237011 28.629 496 341 4 82 574 10 495 3.88e-72 239
Msa1136120 MtrunA17_Chr3g0082691 28.645 583 374 11 1 574 1 550 2.35e-71 239
Msa1136120 MtrunA17_Chr6g0465851 30.040 496 334 5 82 574 30 515 1.07e-70 236
Msa1136120 MtrunA17_Chr5g0425371 27.652 575 385 8 3 573 2 549 1.34e-70 237
Msa1136120 MtrunA17_Chr4g0048911 30.920 511 323 13 57 555 48 540 1.89e-68 231
Msa1136120 MtrunA17_Chr5g0431571 29.167 576 363 11 11 574 4 546 2.10e-67 228
Msa1136120 MtrunA17_Chr5g0431651 29.585 578 371 15 3 574 2 549 2.94e-67 228
Msa1136120 MtrunA17_Chr4g0048921 31.151 504 315 13 82 573 84 567 4.04e-63 217
Msa1136120 MtrunA17_Chr3g0108991 29.746 511 338 12 70 571 14 512 9.19e-63 215
Msa1136120 MtrunA17_Chr3g0108951 29.746 511 338 12 70 571 14 512 9.19e-63 215
Msa1136120 MtrunA17_Chr3g0108971 29.860 499 329 12 82 571 1 487 4.88e-62 212
Msa1136120 MtrunA17_Chr3g0108981 30.478 502 323 14 82 571 1 488 9.54e-61 209
Msa1136120 MtrunA17_Chr3g0108961 30.478 502 323 14 82 571 1 488 9.54e-61 209
Msa1136120 MtrunA17_Chr3g0108941 30.143 491 323 11 70 550 14 494 1.03e-60 209
Msa1136120 MtrunA17_Chr3g0109011 29.860 499 329 12 82 571 1 487 2.63e-60 207
Msa1136120 MtrunA17_Chr3g0109001 29.939 491 324 11 70 550 14 494 3.57e-60 208
Msa1136120 MtrunA17_Chr2g0280581 29.472 492 321 10 72 550 20 498 8.87e-59 204
Msa1136120 MtrunA17_Chr3g0105691 28.514 498 337 10 82 571 59 545 1.17e-58 204
Msa1136120 MtrunA17_Chr3g0109031 28.767 511 343 12 70 571 14 512 1.71e-58 203
Msa1136120 MtrunA17_Chr4g0008621 31.323 431 266 12 13 437 18 424 1.90e-58 201
Msa1136120 MtrunA17_Chr6g0477111 29.555 494 327 12 87 571 6 487 2.07e-58 202
Msa1136120 MtrunA17_Chr3g0099031 29.045 513 339 9 70 571 14 512 2.80e-58 203
Msa1136120 MtrunA17_Chr3g0109021 29.184 490 328 11 70 550 14 493 8.69e-58 201
Msa1136120 MtrunA17_Chr7g0236971 28.501 407 282 2 168 574 1 398 3.95e-57 197
Msa1136120 MtrunA17_Chr8g0357231 35.521 259 162 3 318 574 1 256 7.45e-56 189
Msa1136120 MtrunA17_Chr6g0465981 31.000 400 241 9 3 396 2 372 5.50e-53 185
Msa1136120 MtrunA17_Chr6g0465871 31.000 400 241 9 3 396 2 372 5.50e-53 185
Msa1136120 MtrunA17_Chr6g0466081 31.000 400 241 9 3 396 2 372 5.50e-53 185
Msa1136120 MtrunA17_Chr6g0477121 30.886 395 257 9 162 550 27 411 3.02e-52 184
Msa1136120 MtrunA17_Chr6g0465931 33.019 318 200 5 82 396 30 337 1.84e-48 172
Msa1136120 MtrunA17_Chr6g0466111 33.019 318 200 5 82 396 30 337 2.15e-48 171
Msa1136120 MtrunA17_Chr7g0236951 30.599 317 207 4 82 395 10 316 3.01e-47 167
Msa1136120 MtrunA17_Chr2g0319071 26.626 492 308 8 85 574 46 486 7.69e-47 171
Msa1136120 MtrunA17_Chr7g0237031 30.284 317 208 4 82 395 10 316 2.07e-46 166
Msa1136120 MtrunA17_Chr2g0319081 30.769 299 191 4 278 574 140 424 1.31e-36 141
Msa1136120 MtrunA17_Chr8g0357221 33.333 267 143 6 15 277 55 290 2.03e-34 132
Msa1136120 MtrunA17_Chr5g0445511 30.924 249 159 3 164 410 2 239 1.09e-31 122
Msa1136120 MtrunA17_Chr6g0466031 28.405 257 183 1 318 574 2 257 2.82e-30 119
Msa1136120 MtrunA17_Chr7g0237061 28.405 257 160 3 318 574 2 234 9.68e-28 111
Msa1136120 MtrunA17_Chr2g0310121 23.899 477 325 15 36 486 225 689 1.33e-27 118
Msa1136120 MtrunA17_Chr3g0101681 25.221 452 268 15 76 486 268 690 5.74e-24 106
Msa1136120 MtrunA17_Chr2g0281651 31.429 245 156 7 253 493 43 279 9.20e-24 103
Msa1136120 MtrunA17_Chr7g0237071 27.053 207 136 4 82 282 10 207 5.99e-19 86.3
Msa1136120 MtrunA17_Chr6g0466021 29.851 201 115 6 3 197 2 182 2.10e-18 84.0
Msa1136120 MtrunA17_Chr7g0237021 26.786 168 123 0 407 574 2 169 5.71e-17 79.0
Msa1136120 MtrunA17_Chr7g0236941 26.786 168 123 0 407 574 2 169 5.71e-17 79.0
Msa1136120 MtrunA17_Chr5g0445501 27.381 168 122 0 407 574 2 169 8.04e-16 75.5
Msa1136120 MtrunA17_Chr2g0310411 32.609 138 69 3 7 144 50 163 8.34e-15 72.4
Msa1136120 MtrunA17_Chr7g0233861 28.462 130 84 1 221 350 38 158 1.53e-13 69.3
Msa1136120 MtrunA17_Chr6g0465881 25.444 169 126 0 407 575 2 170 2.30e-13 68.6
Msa1136120 MtrunA17_Chr6g0465941 25.444 169 126 0 407 575 2 170 2.82e-13 68.2
Msa1136120 MtrunA17_Chr6g0466121 25.444 169 126 0 407 575 2 170 2.82e-13 68.2
Msa1136120 MtrunA17_Chr6g0465991 25.444 169 126 0 407 575 2 170 2.82e-13 68.2
Msa1136120 MtrunA17_Chr6g0466091 25.444 169 126 0 407 575 2 170 2.82e-13 68.2
Msa1136120 MtrunA17_Chr7g0236981 28.767 146 86 3 3 147 2 130 7.09e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1136120 AT4G16740.1 36.155 567 326 10 15 575 26 562 5.46e-120 366
Msa1136120 AT3G25810.1 35.642 592 335 14 1 575 33 595 2.74e-115 355
Msa1136120 AT3G25820.1 34.017 585 351 13 1 575 33 592 2.62e-108 337
Msa1136120 AT3G25830.1 34.017 585 351 13 1 575 33 592 2.62e-108 337
Msa1136120 AT4G16730.1 34.345 527 325 9 45 561 7 522 2.57e-105 327
Msa1136120 AT4G16730.2 35.551 481 291 8 87 557 1 472 1.72e-103 321
Msa1136120 AT2G24210.1 34.326 571 335 14 15 574 46 587 4.72e-101 318
Msa1136120 AT4G16740.2 35.309 388 220 7 15 397 26 387 1.95e-73 240
Msa1136120 AT1G61680.2 31.055 512 326 9 59 564 69 559 1.78e-71 239
Msa1136120 AT1G61680.1 30.874 515 330 9 59 564 69 566 3.59e-71 239
Msa1136120 AT3G25820.2 32.936 419 253 9 1 415 33 427 1.43e-68 229
Msa1136120 AT5G23960.2 27.065 569 371 15 15 573 7 541 3.48e-57 201
Msa1136120 AT4G16740.4 33.724 341 196 6 15 350 26 341 6.14e-57 196
Msa1136120 AT4G16740.3 33.724 341 196 6 15 350 26 341 6.14e-57 196
Msa1136120 AT5G23960.1 27.145 571 370 16 15 573 7 543 1.71e-56 199
Msa1136120 AT3G14520.1 25.976 589 380 15 3 574 52 601 1.60e-54 195
Msa1136120 AT1G31950.1 25.219 571 380 13 17 574 67 603 2.52e-54 194
Msa1136120 AT1G70080.1 26.423 492 351 6 87 573 122 607 5.72e-54 194
Msa1136120 AT1G31950.3 26.337 505 342 11 83 574 117 604 7.23e-54 193
Msa1136120 AT3G29410.2 25.845 503 344 10 83 574 11 495 2.87e-53 189
Msa1136120 AT3G29410.1 25.845 503 344 10 83 574 116 600 1.01e-52 190
Msa1136120 AT3G14540.1 25.085 590 384 15 3 574 49 598 1.11e-50 184
Msa1136120 AT3G14490.1 27.092 502 341 10 83 574 112 598 3.66e-50 183
Msa1136120 AT3G25820.4 31.073 354 217 8 1 350 33 363 2.58e-48 173
Msa1136120 AT3G25820.3 31.073 354 217 8 1 350 33 363 2.58e-48 173
Msa1136120 AT1G33750.1 25.462 487 345 9 94 575 128 601 2.62e-47 175
Msa1136120 AT1G48800.1 28.000 500 316 12 94 573 127 602 2.71e-45 169
Msa1136120 AT4G13300.1 24.950 497 358 7 83 574 65 551 9.36e-43 161
Msa1136120 AT1G31950.2 26.866 402 277 9 83 478 117 507 6.99e-42 158
Msa1136120 AT5G44630.1 26.104 498 341 10 88 574 73 554 8.44e-42 159
Msa1136120 AT3G29110.1 25.458 491 339 9 94 573 119 593 3.24e-41 157
Msa1136120 AT3G32030.1 23.705 502 356 11 84 574 116 601 2.04e-40 155
Msa1136120 AT4G13280.2 25.207 484 345 8 97 574 79 551 5.94e-40 153
Msa1136120 AT4G20200.1 25.103 486 347 8 94 573 126 600 1.73e-39 153
Msa1136120 AT3G14540.2 24.949 489 330 13 3 484 49 507 3.20e-39 150
Msa1136120 AT4G20230.1 24.641 487 349 9 94 573 126 601 1.06e-38 150
Msa1136120 AT4G20230.2 24.641 487 349 9 94 573 138 613 1.58e-38 150
Msa1136120 AT1G48820.1 28.477 453 254 14 83 522 113 508 4.98e-36 142
Msa1136120 AT3G29190.1 23.409 487 354 8 94 573 123 597 4.53e-35 140
Msa1136120 AT5G48110.1 27.811 338 236 6 239 572 5 338 7.38e-35 135
Msa1136120 AT4G20210.1 24.444 540 350 12 63 574 88 597 1.42e-34 138
Msa1136120 AT4G13280.1 25.000 484 316 11 97 574 79 521 1.43e-33 134
Msa1136120 AT4G15870.1 22.727 506 344 10 83 573 121 594 2.97e-33 134
Msa1136120 AT2G23230.2 23.350 591 378 13 12 573 52 596 2.16e-32 132
Msa1136120 AT2G23230.1 23.549 586 378 13 12 573 52 591 2.27e-32 132
Msa1136120 AT1G66020.1 23.926 489 349 8 94 573 120 594 1.94e-30 126
Msa1136120 AT1G61120.1 25.234 535 335 17 26 524 225 730 3.82e-30 126
Msa1136120 AT1G79460.1 24.485 437 289 13 76 486 266 687 1.22e-22 103
Msa1136120 AT1G66020.2 25.714 280 194 6 94 368 120 390 2.67e-22 100
Msa1136120 AT4G02780.1 25.993 277 171 8 79 328 326 595 1.75e-14 77.4

Find 89 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCCATACTCTTTATTTAAA+TGG 0.139326 7_4:+4185161 Msa1136120:CDS
CTTCATGTCTGATTGATTTA+TGG 0.167045 7_4:-4180905 None:intergenic
CATCTATTTCCTTCTCAAAA+TGG 0.222339 7_4:-4182512 None:intergenic
AATGAAATTGCTTATGATAT+TGG 0.222502 7_4:+4184449 Msa1136120:CDS
CACTAAATTTGTTGAAGTTT+AGG 0.232104 7_4:-4182563 None:intergenic
TGGAAGTTCTTCAATTTCTT+TGG 0.232814 7_4:-4184384 None:intergenic
CTTCTTGAGGCCTCGCATTT+AGG 0.235209 7_4:+4182823 Msa1136120:CDS
CACCATTTAAATAAAGAGTA+TGG 0.242038 7_4:-4185163 None:intergenic
TTTCCTCAAGGATTCATATT+TGG 0.244055 7_4:-4183858 None:intergenic
ACTAAATTTGTTGAAGTTTA+GGG 0.271334 7_4:-4182562 None:intergenic
TATGAATGGAGTAGAATTAA+TGG 0.279603 7_4:-4184721 None:intergenic
TCCACACATATATGATGATT+TGG 0.288442 7_4:+4184786 Msa1136120:CDS
AATGCATGGAAAAGAATTAA+TGG 0.289780 7_4:+4185071 Msa1136120:CDS
GGTCCATGTCTTTGTTAGTT+TGG 0.298719 7_4:-4183041 None:intergenic
TGCATCACCCCTTTCTCTTT+CGG 0.326848 7_4:-4184967 None:intergenic
AAGCAAATCTTCATGTAATC+TGG 0.341761 7_4:-4184404 None:intergenic
GAAAGCTTCATGTGTGCAAC+TGG 0.344995 7_4:+4183821 Msa1136120:CDS
CAAATTATAGACCCAACATT+TGG 0.350924 7_4:+4180947 Msa1136120:CDS
AATATGAATCCTTGAGGAAA+TGG 0.354532 7_4:+4183861 Msa1136120:CDS
ATTCGGTTGTGCAATGATCT+TGG 0.362231 7_4:+4184829 Msa1136120:CDS
TACCATGGTTTGATTTGAAA+TGG 0.363499 7_4:+4183004 Msa1136120:CDS
AAAATTAGAGTTTGTTGATT+GGG 0.365628 7_4:+4182467 Msa1136120:CDS
TATTTAAATGGTGATGGGTT+TGG 0.370827 7_4:+4185173 Msa1136120:CDS
TTTAGAAGATGAAATAATCT+TGG 0.375340 7_4:+4182846 Msa1136120:CDS
TGTCCAACTCTTGAACAAAA+TGG 0.378832 7_4:-4182437 None:intergenic
TTCCATAAAAGCAACTTGAT+TGG 0.394134 7_4:-4185102 None:intergenic
CTTTGGAGCTTCCTTCCCAT+TGG 0.402644 7_4:+4182977 Msa1136120:CDS
ACTCTTTCAACAACCATGAT+AGG 0.412829 7_4:-4182946 None:intergenic
TTCGGTTGTGCAATGATCTT+GGG 0.427128 7_4:+4184830 Msa1136120:CDS
TGAAAGAGTGGTCCATGCTT+TGG 0.429856 7_4:+4182960 Msa1136120:CDS
AATGCATGGATTACATCTTC+AGG 0.430374 7_4:+4184697 Msa1136120:CDS
AAATCGTCTTTCCAAATGTT+GGG 0.430567 7_4:-4180958 None:intergenic
AAAATCGTCTTTCCAAATGT+TGG 0.438827 7_4:-4180959 None:intergenic
ACTCTTTATTTAAATGGTGA+TGG 0.441733 7_4:+4185167 Msa1136120:CDS
TTATGTTACAAGACACCCTT+TGG 0.442849 7_4:+4181091 Msa1136120:CDS
TTCAAATATTCTTGCAACGA+TGG 0.450046 7_4:-4184673 None:intergenic
CAAAGAATTAGTTCCTATCA+TGG 0.450137 7_4:+4182933 Msa1136120:CDS
GAAGCAAAGTGGTACAAAAC+AGG 0.461968 7_4:+4184643 Msa1136120:CDS
TTTAGGTGGTGGGAGAAACT+TGG 0.465320 7_4:+4183758 Msa1136120:intron
ATCAATAGGCCGAAAGAGAA+AGG 0.466163 7_4:+4184958 Msa1136120:intron
CTCTTTATTTAAATGGTGAT+GGG 0.466974 7_4:+4185168 Msa1136120:CDS
CCTTCTCAAAATGGTTGGCA+AGG 0.479679 7_4:-4182503 None:intergenic
CGGCTTCAGTTCTTCGAATG+AGG 0.481721 7_4:-4183939 None:intergenic
TCAATAGGCCGAAAGAGAAA+GGG 0.491702 7_4:+4184959 Msa1136120:intron
CTTTGGAATGCCGTTGTGAA+CGG 0.493283 7_4:-4183959 None:intergenic
AAACTGTGGCAAAATATGAA+TGG 0.494911 7_4:-4184735 None:intergenic
AAGAATATTTGAACAATGCA+TGG 0.501699 7_4:+4184683 Msa1136120:CDS
ACAATGTGTCTCTCATCATT+CGG 0.506273 7_4:+4184812 Msa1136120:CDS
GTTACCTTACCTAAAGAAAA+CGG 0.507532 7_4:+4184496 Msa1136120:CDS
GAAATTGCTTATGATATTGG+AGG 0.507730 7_4:+4184452 Msa1136120:CDS
ATGCATGGATTACATCTTCA+GGG 0.512459 7_4:+4184698 Msa1136120:CDS
TATTTCCTTCTCAAAATGGT+TGG 0.513900 7_4:-4182508 None:intergenic
AAACCATGGTACTCTCCAAT+GGG 0.524495 7_4:-4182992 None:intergenic
ACCATTTAAATAAAGAGTAT+GGG 0.538953 7_4:-4185162 None:intergenic
CTTCCCATTGGAGAGTACCA+TGG 0.543361 7_4:+4182989 Msa1136120:CDS
CAAACCATGGTACTCTCCAA+TGG 0.545676 7_4:-4182993 None:intergenic
AAGAGGTCAAAGAATTGTCC+AGG 0.549308 7_4:+4183121 Msa1136120:CDS
TGATAAAAGACACCGCCAAA+GGG 0.549633 7_4:-4181106 None:intergenic
CGTTCACAACGGCATTCCAA+AGG 0.552185 7_4:+4183960 Msa1136120:CDS
TGTTACAAGACACCCTTTGG+CGG 0.555976 7_4:+4181094 Msa1136120:CDS
CATAAATCAATCAGACATGA+AGG 0.557678 7_4:+4180906 Msa1136120:CDS
AGATGAAATAATCTTGGATG+AGG 0.563417 7_4:+4182852 Msa1136120:CDS
GGGAAGGAAGCTCCAAAGCA+TGG 0.563491 7_4:-4182972 None:intergenic
AAAGCTTCATGTGTGCAACT+GGG 0.566005 7_4:+4183822 Msa1136120:CDS
AAGACATTATAAACAATGCA+TGG 0.567870 7_4:+4185057 Msa1136120:CDS
ACATGAAGGTGGACATGAGA+AGG 0.569743 7_4:+4180920 Msa1136120:CDS
TTGTCAATTCAAGTAAAACA+TGG 0.581120 7_4:-4183062 None:intergenic
TATCATGGTTGTTGAAAGAG+TGG 0.581396 7_4:+4182948 Msa1136120:CDS
ATTTGTTAATTCATAAACTG+TGG 0.582525 7_4:-4184749 None:intergenic
TTTAGTGAGCCATTTCCTCA+AGG 0.592210 7_4:-4183870 None:intergenic
GAATGAAATGAACGTTTCAG+AGG 0.598353 7_4:+4185013 Msa1136120:CDS
ATCTTCTAAACCTAAATGCG+AGG 0.598605 7_4:-4182833 None:intergenic
AAGCAACTTCTTAGATGTGA+CGG 0.605904 7_4:+4182762 Msa1136120:CDS
TTGATAAAAGACACCGCCAA+AGG 0.607038 7_4:-4181107 None:intergenic
ACCAAATCATCATATATGTG+TGG 0.614177 7_4:-4184787 None:intergenic
ATTAAACTTTAACATAACGC+AGG 0.618635 7_4:+4183086 Msa1136120:CDS
AGACCAAATATGAATCCTTG+AGG 0.622902 7_4:+4183855 Msa1136120:CDS
CATGGTACTCTCCAATGGGA+AGG 0.626881 7_4:-4182988 None:intergenic
TGTTGTGCAGTTAAACAAGT+GGG 0.628163 7_4:+4182398 Msa1136120:CDS
CAATAGGCCGAAAGAGAAAG+GGG 0.640612 7_4:+4184960 Msa1136120:intron
CATTATACGTGGAAGCAAAG+TGG 0.642811 7_4:+4184632 Msa1136120:CDS
TGCCATTTCAAATCAAACCA+TGG 0.657867 7_4:-4183006 None:intergenic
AAGCTTCATGTGTGCAACTG+GGG 0.661508 7_4:+4183823 Msa1136120:CDS
AAATCAATCAGACATGAAGG+TGG 0.661768 7_4:+4180909 Msa1136120:CDS
AGATATTATAGAGCTTCTTG+AGG 0.663851 7_4:+4182810 Msa1136120:CDS
ATACCAAACTAACAAAGACA+TGG 0.669679 7_4:+4183038 Msa1136120:CDS
TTGTTGTGCAGTTAAACAAG+TGG 0.674674 7_4:+4182397 Msa1136120:CDS
AGAACTGAAGCCGTTCACAA+CGG 0.708833 7_4:+4183949 Msa1136120:CDS
CAATGATCTTGGGACCGCAG+TGG 0.735626 7_4:+4184840 Msa1136120:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATATAT+AGG + chr7_4:4181043-4181062 Msa1136120:intron 0.0%
!! TATATATATATATATATATA+GGG + chr7_4:4181044-4181063 Msa1136120:intron 0.0%
!! ATATATATATATATATATAT+AGG - chr7_4:4181043-4181062 None:intergenic 0.0%
!! TATATATATATATATATATA+AGG + chr7_4:4181044-4181063 Msa1136120:intron 0.0%
!! ATATATATATATATATATAT+GGG - chr7_4:4181043-4181062 None:intergenic 0.0%
!! TATATATATATATATATATA+TGG - chr7_4:4181044-4181063 None:intergenic 0.0%
!!! TTTTCATTAAATTATTATCT+AGG - chr7_4:4181838-4181857 None:intergenic 10.0%
!! AATGATATTTAATTATCTAA+TGG - chr7_4:4183284-4183303 None:intergenic 10.0%
!!! AATATCATTGTATTTATTTT+AGG + chr7_4:4183295-4183314 Msa1136120:intron 10.0%
!!! ATATCATTGTATTTATTTTA+GGG + chr7_4:4183296-4183315 Msa1136120:intron 10.0%
!!! ATATCAAATTTCAAATTTTA+AGG - chr7_4:4183484-4183503 None:intergenic 10.0%
!! AAAAATAAAATAAACTACAT+AGG + chr7_4:4183562-4183581 Msa1136120:intron 10.0%
!! AAAATAAAATAAACTACATA+GGG + chr7_4:4183563-4183582 Msa1136120:intron 10.0%
!! TCACTATTAAATTAAATTAA+AGG - chr7_4:4183635-4183654 None:intergenic 10.0%
!!! TTAATTTAATAGTGAAATTT+TGG + chr7_4:4183640-4183659 Msa1136120:intron 10.0%
!!! GTTTTTTTTTTAATTGATAA+TGG - chr7_4:4184066-4184085 None:intergenic 10.0%
!! AGGAAAGTAAAAAAAAAATT+GGG - chr7_4:4181818-4181837 None:intergenic 15.0%
!! TAGGAAAGTAAAAAAAAAAT+TGG - chr7_4:4181819-4181838 None:intergenic 15.0%
!!! TTTTAGAAATCAATTTATCT+AGG + chr7_4:4181966-4181985 Msa1136120:intron 15.0%
!! TTTAGAAATCAATTTATCTA+GGG + chr7_4:4181967-4181986 Msa1136120:intron 15.0%
!!! CTAATTAATTTTTGGTTTTT+TGG + chr7_4:4182712-4182731 Msa1136120:intron 15.0%
!!! AAAATTATTTCTTCTTCTTT+TGG - chr7_4:4183207-4183226 None:intergenic 15.0%
!!! AAAAGAAGAAGAAATAATTT+TGG + chr7_4:4183206-4183225 Msa1136120:intron 15.0%
!!! TTTGAAATTTGATATCAATA+AGG + chr7_4:4183489-4183508 Msa1136120:intron 15.0%
!! ATAATAATAAGAAGAAATGT+AGG - chr7_4:4184325-4184344 None:intergenic 15.0%
!! TAATTTGATATACAATCAAT+AGG + chr7_4:4184944-4184963 Msa1136120:intron 15.0%
!! ACATGTATATTTAATTCATG+TGG - chr7_4:4181906-4181925 None:intergenic 20.0%
!! CATGAATTAAATATACATGT+AGG + chr7_4:4181906-4181925 Msa1136120:intron 20.0%
!!! ATTGAGAAATCAATTTTTAG+TGG + chr7_4:4181933-4181952 Msa1136120:intron 20.0%
!!! ATTGATTTCTAAAAGTATGA+AGG - chr7_4:4181960-4181979 None:intergenic 20.0%
!!! AAAAATTAGAGTTTGTTGAT+TGG + chr7_4:4182466-4182485 Msa1136120:CDS 20.0%
!!! AAAATTAGAGTTTGTTGATT+GGG + chr7_4:4182467-4182486 Msa1136120:CDS 20.0%
!!! ACTAAATTTGTTGAAGTTTA+GGG - chr7_4:4182565-4182584 None:intergenic 20.0%
!! TAATTCAAATAGATAGTTAC+CGG - chr7_4:4182661-4182680 None:intergenic 20.0%
!! TTTAGAAGATGAAATAATCT+TGG + chr7_4:4182846-4182865 Msa1136120:CDS 20.0%
!!! TATATTTTTTACGAGCAAAA+GGG - chr7_4:4183336-4183355 None:intergenic 20.0%
!!! ATATATTTTTTACGAGCAAA+AGG - chr7_4:4183337-4183356 None:intergenic 20.0%
!! CAAAGAATCTTCAAATTATA+GGG - chr7_4:4183371-4183390 None:intergenic 20.0%
!! TCAAAGAATCTTCAAATTAT+AGG - chr7_4:4183372-4183391 None:intergenic 20.0%
!!! ATTTGAAGATTCTTTGATTT+TGG + chr7_4:4183375-4183394 Msa1136120:intron 20.0%
!! TATACGGTTAAAATTTATGA+AGG - chr7_4:4183402-4183421 None:intergenic 20.0%
!! ATCAATAAATATAGGATCAT+TGG - chr7_4:4183692-4183711 None:intergenic 20.0%
!! ATATTAGTAGTATATGTCAT+TGG - chr7_4:4183715-4183734 None:intergenic 20.0%
!!! AACATTCATATTTGTCTTTT+AGG + chr7_4:4183741-4183760 Msa1136120:intron 20.0%
!! TTTATAGAGAATAAAACCTT+TGG - chr7_4:4183979-4183998 None:intergenic 20.0%
!!! TTTTGGTTGAAATTTTTGTA+GGG - chr7_4:4184024-4184043 None:intergenic 20.0%
!!! ATTTTGGTTGAAATTTTTGT+AGG - chr7_4:4184025-4184044 None:intergenic 20.0%
!!! AATATACCATGAAGAAATTT+TGG - chr7_4:4184041-4184060 None:intergenic 20.0%
!! AATGAAATTGCTTATGATAT+TGG + chr7_4:4184449-4184468 Msa1136120:CDS 20.0%
!!! ATTTGTTAATTCATAAACTG+TGG - chr7_4:4184752-4184771 None:intergenic 20.0%
!! TTTCTTGCTTGATTAAAAAA+TGG - chr7_4:4185128-4185147 None:intergenic 20.0%
!!! ACCATTTAAATAAAGAGTAT+GGG - chr7_4:4185165-4185184 None:intergenic 20.0%
! AAAGTGAAAATCACATCTTA+AGG - chr7_4:4181378-4181397 None:intergenic 25.0%
! ATAAAAGACACCTTCATAAA+AGG + chr7_4:4181475-4181494 Msa1136120:intron 25.0%
!!! AATGATTTTTTTGTCCTCTA+TGG + chr7_4:4181700-4181719 Msa1136120:intron 25.0%
! CATAACCCTCTATTATTAAA+TGG - chr7_4:4181750-4181769 None:intergenic 25.0%
! GAATAAAATGTCAAATGAGT+TGG - chr7_4:4182020-4182039 None:intergenic 25.0%
!!! CACTAAATTTGTTGAAGTTT+AGG - chr7_4:4182566-4182585 None:intergenic 25.0%
! CCAAAAATTAATTAGTTCCT+AGG - chr7_4:4182707-4182726 None:intergenic 25.0%
!! CCTAGGAACTAATTAATTTT+TGG + chr7_4:4182704-4182723 Msa1136120:intron 25.0%
!!! CCAATTTTTAGCTAACATTT+TGG - chr7_4:4182878-4182897 None:intergenic 25.0%
! CCAAAATGTTAGCTAAAAAT+TGG + chr7_4:4182875-4182894 Msa1136120:CDS 25.0%
! TTGTCAATTCAAGTAAAACA+TGG - chr7_4:4183065-4183084 None:intergenic 25.0%
! ATTAAACTTTAACATAACGC+AGG + chr7_4:4183086-4183105 Msa1136120:CDS 25.0%
!! AAACAACTTATTTCTTTCTC+TGG - chr7_4:4183160-4183179 None:intergenic 25.0%
! TCTGTAATTTGAAGATTCTT+TGG - chr7_4:4183522-4183541 None:intergenic 25.0%
! TTATGTGCTTGTAATATTAG+CGG - chr7_4:4183600-4183619 None:intergenic 25.0%
! GTCATTGGATCAATAAATAT+AGG - chr7_4:4183700-4183719 None:intergenic 25.0%
!! ATTCATATTTGTCTTTTAGG+TGG + chr7_4:4183744-4183763 Msa1136120:intron 25.0%
! TTTCAACCAAAATTTCTTCA+TGG + chr7_4:4184032-4184051 Msa1136120:intron 25.0%
! AGATTGCAGTCATAAAAAAA+AGG - chr7_4:4184284-4184303 None:intergenic 25.0%
!!! ATTTTGTAAAGCATTATACG+TGG + chr7_4:4184621-4184640 Msa1136120:CDS 25.0%
! AAGAATATTTGAACAATGCA+TGG + chr7_4:4184683-4184702 Msa1136120:CDS 25.0%
! TATGAATGGAGTAGAATTAA+TGG - chr7_4:4184724-4184743 None:intergenic 25.0%
! AAGACATTATAAACAATGCA+TGG + chr7_4:4185057-4185076 Msa1136120:CDS 25.0%
! AATGCATGGAAAAGAATTAA+TGG + chr7_4:4185071-4185090 Msa1136120:CDS 25.0%
! CACCATTTAAATAAAGAGTA+TGG - chr7_4:4185166-4185185 None:intergenic 25.0%
!! ACTCTTTATTTAAATGGTGA+TGG + chr7_4:4185167-4185186 Msa1136120:CDS 25.0%
!! CTCTTTATTTAAATGGTGAT+GGG + chr7_4:4185168-4185187 Msa1136120:CDS 25.0%
! CTTCATGTCTGATTGATTTA+TGG - chr7_4:4180908-4180927 None:intergenic 30.0%
CATAAATCAATCAGACATGA+AGG + chr7_4:4180906-4180925 Msa1136120:CDS 30.0%
CAAATTATAGACCCAACATT+TGG + chr7_4:4180947-4180966 Msa1136120:CDS 30.0%
AAATCGTCTTTCCAAATGTT+GGG - chr7_4:4180961-4180980 None:intergenic 30.0%
AAAATCGTCTTTCCAAATGT+TGG - chr7_4:4180962-4180981 None:intergenic 30.0%
! TTTTATCAAGCAACACCTTA+AGG + chr7_4:4181121-4181140 Msa1136120:CDS 30.0%
AAAGTGAAAATCACACCTTA+AGG - chr7_4:4181139-4181158 None:intergenic 30.0%
ACACCTTCATAAAAGTAAGT+TGG + chr7_4:4181181-4181200 Msa1136120:intron 30.0%
!! ACACCAACTTACTTTTATGA+AGG - chr7_4:4181187-4181206 None:intergenic 30.0%
ATAAAAGACACCTTCACAAA+AGG + chr7_4:4181236-4181255 Msa1136120:intron 30.0%
ACACCTTCATAAAAGTAAGT+TGG + chr7_4:4181181-4181200 Msa1136120:intron 30.0%
!! ACACCAACTTACTTTTATGA+AGG - chr7_4:4181187-4181206 None:intergenic 30.0%
! ATAGATGACACCTTTTATGA+AGG - chr7_4:4181488-4181507 None:intergenic 30.0%
AGCAATATATGAGTCCATAA+AGG + chr7_4:4181598-4181617 Msa1136120:intron 30.0%
!! CATAAGTTGGTCAAACTTTA+TGG - chr7_4:4181636-4181655 None:intergenic 30.0%
CATAAAGTTTGACCAACTTA+TGG + chr7_4:4181634-4181653 Msa1136120:intron 30.0%
CCTCTATTATTAAATGGATG+GGG - chr7_4:4181744-4181763 None:intergenic 30.0%
CCCTCTATTATTAAATGGAT+GGG - chr7_4:4181745-4181764 None:intergenic 30.0%
CCCATCCATTTAATAATAGA+GGG + chr7_4:4181742-4181761 Msa1136120:intron 30.0%
ACCCTCTATTATTAAATGGA+TGG - chr7_4:4181746-4181765 None:intergenic 30.0%
TGTTGTATGCTTCAAATCAA+AGG - chr7_4:4181866-4181885 None:intergenic 30.0%
! AAATAAAAAGTGCAGACAGA+CGG - chr7_4:4182337-4182356 None:intergenic 30.0%
TATTTCCTTCTCAAAATGGT+TGG - chr7_4:4182511-4182530 None:intergenic 30.0%
CATCTATTTCCTTCTCAAAA+TGG - chr7_4:4182515-4182534 None:intergenic 30.0%
CATCAAATTGATCAAAACCT+AGG + chr7_4:4182687-4182706 Msa1136120:intron 30.0%
AGATATTATAGAGCTTCTTG+AGG + chr7_4:4182810-4182829 Msa1136120:CDS 30.0%
AGATGAAATAATCTTGGATG+AGG + chr7_4:4182852-4182871 Msa1136120:CDS 30.0%
CAAAGAATTAGTTCCTATCA+TGG + chr7_4:4182933-4182952 Msa1136120:CDS 30.0%
!! TACCATGGTTTGATTTGAAA+TGG + chr7_4:4183004-4183023 Msa1136120:CDS 30.0%
ATACCAAACTAACAAAGACA+TGG + chr7_4:4183038-4183057 Msa1136120:CDS 30.0%
!!! TTTGACCTCTTTTTGAAGTT+TGG - chr7_4:4183112-4183131 None:intergenic 30.0%
TCTGGCTAAAAATATATACC+TGG - chr7_4:4183142-4183161 None:intergenic 30.0%
!!! GGCATATCATCGATTTTATA+CGG - chr7_4:4183418-4183437 None:intergenic 30.0%
GTATAAAATCGATGATATGC+CGG + chr7_4:4183417-4183436 Msa1136120:intron 30.0%
TATAAAATCGATGATATGCC+GGG + chr7_4:4183418-4183437 Msa1136120:intron 30.0%
CAAAATTCGCTCAAATTACA+GGG + chr7_4:4183449-4183468 Msa1136120:intron 30.0%
AAAATTCGCTCAAATTACAG+GGG + chr7_4:4183450-4183469 Msa1136120:intron 30.0%
CTTGTAATATTAGCGGTTTA+TGG - chr7_4:4183593-4183612 None:intergenic 30.0%
!! ATATTTGTCTTTTAGGTGGT+GGG + chr7_4:4183748-4183767 Msa1136120:intron 30.0%
! ACTTGTGTTTTGCAAGAAAT+AGG + chr7_4:4183792-4183811 Msa1136120:CDS 30.0%
TTTCCTCAAGGATTCATATT+TGG - chr7_4:4183861-4183880 None:intergenic 30.0%
AATATGAATCCTTGAGGAAA+TGG + chr7_4:4183861-4183880 Msa1136120:CDS 30.0%
!! CTAGCAAGATAATTTTAGAG+AGG + chr7_4:4184091-4184110 Msa1136120:intron 30.0%
CTCATCACAAAATTTAACGA+CGG - chr7_4:4184145-4184164 None:intergenic 30.0%
CGACGGAAAAAAATTATTGA+CGG - chr7_4:4184192-4184211 None:intergenic 30.0%
GAAACAATCAAAATTAGCGA+CGG - chr7_4:4184209-4184228 None:intergenic 30.0%
! CACTCATAACATTTGTTAAG+TGG - chr7_4:4184261-4184280 None:intergenic 30.0%
ATCATGTTCATAAACACAGA+TGG + chr7_4:4184357-4184376 Msa1136120:intron 30.0%
TCATGTTCATAAACACAGAT+GGG + chr7_4:4184358-4184377 Msa1136120:intron 30.0%
TGGAAGTTCTTCAATTTCTT+TGG - chr7_4:4184387-4184406 None:intergenic 30.0%
AAGCAAATCTTCATGTAATC+TGG - chr7_4:4184407-4184426 None:intergenic 30.0%
GAAATTGCTTATGATATTGG+AGG + chr7_4:4184452-4184471 Msa1136120:CDS 30.0%
GTTACCTTACCTAAAGAAAA+CGG + chr7_4:4184496-4184515 Msa1136120:CDS 30.0%
! TTATCCTCACATTTTTACAG+TGG + chr7_4:4184593-4184612 Msa1136120:intron 30.0%
TTCAAATATTCTTGCAACGA+TGG - chr7_4:4184676-4184695 None:intergenic 30.0%
AAACTGTGGCAAAATATGAA+TGG - chr7_4:4184738-4184757 None:intergenic 30.0%
TCCACACATATATGATGATT+TGG + chr7_4:4184786-4184805 Msa1136120:CDS 30.0%
ACCAAATCATCATATATGTG+TGG - chr7_4:4184790-4184809 None:intergenic 30.0%
AACTTAAAAAGTTACCACTG+CGG - chr7_4:4184857-4184876 None:intergenic 30.0%
TTCCATAAAAGCAACTTGAT+TGG - chr7_4:4185105-4185124 None:intergenic 30.0%
! GCCCATACTCTTTATTTAAA+TGG + chr7_4:4185161-4185180 Msa1136120:CDS 30.0%
!! TATTTAAATGGTGATGGGTT+TGG + chr7_4:4185173-4185192 Msa1136120:CDS 30.0%
!!! GTTTTTTGATATCTCGATCT+TGG - chr7_4:4185202-4185221 None:intergenic 30.0%
AAATCAATCAGACATGAAGG+TGG + chr7_4:4180909-4180928 Msa1136120:CDS 35.0%
TTATGTTACAAGACACCCTT+TGG + chr7_4:4181091-4181110 Msa1136120:CDS 35.0%
! ATAGAAGACACCTTTTGTGA+AGG - chr7_4:4181249-4181268 None:intergenic 35.0%
GGACTCATATATTGCCTTTA+TGG - chr7_4:4181615-4181634 None:intergenic 35.0%
TATATCCAAGCACCATAAGT+TGG - chr7_4:4181649-4181668 None:intergenic 35.0%
TGTTAACAGTGTTTCCATAG+AGG - chr7_4:4181717-4181736 None:intergenic 35.0%
CCCCATCCATTTAATAATAG+AGG + chr7_4:4181741-4181760 Msa1136120:intron 35.0%
! AATAAAAAGTGCAGACAGAC+GGG - chr7_4:4182336-4182355 None:intergenic 35.0%
TTGTTGTGCAGTTAAACAAG+TGG + chr7_4:4182397-4182416 Msa1136120:CDS 35.0%
TGTTGTGCAGTTAAACAAGT+GGG + chr7_4:4182398-4182417 Msa1136120:CDS 35.0%
TGTCCAACTCTTGAACAAAA+TGG - chr7_4:4182440-4182459 None:intergenic 35.0%
GTTGATTGGGTTCAAAAACT+AGG + chr7_4:4182480-4182499 Msa1136120:CDS 35.0%
! CACTATGCTTCAAGCTTTTA+AGG + chr7_4:4182610-4182629 Msa1136120:CDS 35.0%
!!! TTCAAGCTTTTAAGGCAACA+TGG + chr7_4:4182618-4182637 Msa1136120:CDS 35.0%
! GGATACAATGTTTTTCCATC+CGG + chr7_4:4182639-4182658 Msa1136120:CDS 35.0%
TCAAATAGATAGTTACCGGA+TGG - chr7_4:4182657-4182676 None:intergenic 35.0%
AAGCAACTTCTTAGATGTGA+CGG + chr7_4:4182762-4182781 Msa1136120:CDS 35.0%
ATCTTCTAAACCTAAATGCG+AGG - chr7_4:4182836-4182855 None:intergenic 35.0%
ACTCTTTCAACAACCATGAT+AGG - chr7_4:4182949-4182968 None:intergenic 35.0%
TATCATGGTTGTTGAAAGAG+TGG + chr7_4:4182948-4182967 Msa1136120:CDS 35.0%
! TGCCATTTCAAATCAAACCA+TGG - chr7_4:4183009-4183028 None:intergenic 35.0%
ATAAAATCGATGATATGCCG+GGG + chr7_4:4183419-4183438 Msa1136120:intron 35.0%
! CCTGTAATTTGAGCGAATTT+TGG - chr7_4:4183451-4183470 None:intergenic 35.0%
CCAAAATTCGCTCAAATTAC+AGG + chr7_4:4183448-4183467 Msa1136120:intron 35.0%
!! CATATTTGTCTTTTAGGTGG+TGG + chr7_4:4183747-4183766 Msa1136120:intron 35.0%
! GTGTTTTGCAAGAAATAGGT+TGG + chr7_4:4183796-4183815 Msa1136120:CDS 35.0%
AGACCAAATATGAATCCTTG+AGG + chr7_4:4183855-4183874 Msa1136120:CDS 35.0%
! AGTACCGTTTTCTTTAGGTA+AGG - chr7_4:4184503-4184522 None:intergenic 35.0%
! GCATTAGTACCGTTTTCTTT+AGG - chr7_4:4184508-4184527 None:intergenic 35.0%
CAATCCACTGTAAAAATGTG+AGG - chr7_4:4184600-4184619 None:intergenic 35.0%
! AATGCATGGATTACATCTTC+AGG + chr7_4:4184697-4184716 Msa1136120:CDS 35.0%
! ATGCATGGATTACATCTTCA+GGG + chr7_4:4184698-4184717 Msa1136120:CDS 35.0%
ACAATGTGTCTCTCATCATT+CGG + chr7_4:4184812-4184831 Msa1136120:CDS 35.0%
GAATGAAATGAACGTTTCAG+AGG + chr7_4:4185013-4185032 Msa1136120:CDS 35.0%
!!! CTCCAATCAAGTTGCTTTTA+TGG + chr7_4:4185100-4185119 Msa1136120:CDS 35.0%
TGATAAAAGACACCGCCAAA+GGG - chr7_4:4181109-4181128 None:intergenic 40.0%
TTGATAAAAGACACCGCCAA+AGG - chr7_4:4181110-4181129 None:intergenic 40.0%
TTTGACCAACTTATGGTGCT+TGG + chr7_4:4181641-4181660 Msa1136120:intron 40.0%
!! CCAAGGAATTTTCAAGACAG+AGG - chr7_4:4182177-4182196 None:intergenic 40.0%
CCTCTGTCTTGAAAATTCCT+TGG + chr7_4:4182174-4182193 Msa1136120:intron 40.0%
!! ACGCCATTTTGTTCAAGAGT+TGG + chr7_4:4182434-4182453 Msa1136120:CDS 40.0%
AAACCATGGTACTCTCCAAT+GGG - chr7_4:4182995-4183014 None:intergenic 40.0%
GGTCCATGTCTTTGTTAGTT+TGG - chr7_4:4183044-4183063 None:intergenic 40.0%
AAGAGGTCAAAGAATTGTCC+AGG + chr7_4:4183121-4183140 Msa1136120:CDS 40.0%
TAAAATCGATGATATGCCGG+GGG + chr7_4:4183420-4183439 Msa1136120:intron 40.0%
AAAGCTTCATGTGTGCAACT+GGG + chr7_4:4183822-4183841 Msa1136120:CDS 40.0%
TTTAGTGAGCCATTTCCTCA+AGG - chr7_4:4183873-4183892 None:intergenic 40.0%
CATTATACGTGGAAGCAAAG+TGG + chr7_4:4184632-4184651 Msa1136120:CDS 40.0%
GAAGCAAAGTGGTACAAAAC+AGG + chr7_4:4184643-4184662 Msa1136120:CDS 40.0%
ATTCGGTTGTGCAATGATCT+TGG + chr7_4:4184829-4184848 Msa1136120:CDS 40.0%
TTCGGTTGTGCAATGATCTT+GGG + chr7_4:4184830-4184849 Msa1136120:CDS 40.0%
ATCAATAGGCCGAAAGAGAA+AGG + chr7_4:4184958-4184977 Msa1136120:intron 40.0%
TCAATAGGCCGAAAGAGAAA+GGG + chr7_4:4184959-4184978 Msa1136120:intron 40.0%
ACATGAAGGTGGACATGAGA+AGG + chr7_4:4180920-4180939 Msa1136120:CDS 45.0%
! GACGATTTTCTGCAGTCTCT+TGG + chr7_4:4180973-4180992 Msa1136120:CDS 45.0%
TGTTACAAGACACCCTTTGG+CGG + chr7_4:4181094-4181113 Msa1136120:CDS 45.0%
CCTTCTCAAAATGGTTGGCA+AGG - chr7_4:4182506-4182525 None:intergenic 45.0%
!! CCTTGCCAACCATTTTGAGA+AGG + chr7_4:4182503-4182522 Msa1136120:CDS 45.0%
TGAAAGAGTGGTCCATGCTT+TGG + chr7_4:4182960-4182979 Msa1136120:CDS 45.0%
CAAACCATGGTACTCTCCAA+TGG - chr7_4:4182996-4183015 None:intergenic 45.0%
GCAGGCCAAACTTCAAAAAG+AGG + chr7_4:4183104-4183123 Msa1136120:CDS 45.0%
!!! GCGAATTTTGGTTTAACCCC+CGG - chr7_4:4183439-4183458 None:intergenic 45.0%
!! TTTAGGTGGTGGGAGAAACT+TGG + chr7_4:4183758-4183777 Msa1136120:intron 45.0%
GAAAGCTTCATGTGTGCAAC+TGG + chr7_4:4183821-4183840 Msa1136120:CDS 45.0%
AAGCTTCATGTGTGCAACTG+GGG + chr7_4:4183823-4183842 Msa1136120:CDS 45.0%
AGAACTGAAGCCGTTCACAA+CGG + chr7_4:4183949-4183968 Msa1136120:CDS 45.0%
!! CTTTGGAATGCCGTTGTGAA+CGG - chr7_4:4183962-4183981 None:intergenic 45.0%
CAATAGGCCGAAAGAGAAAG+GGG + chr7_4:4184960-4184979 Msa1136120:intron 45.0%
TGCATCACCCCTTTCTCTTT+CGG - chr7_4:4184970-4184989 None:intergenic 45.0%
TGAGCAAACTACTCGTGCCA+AGG - chr7_4:4182194-4182213 None:intergenic 50.0%
CTTCTTGAGGCCTCGCATTT+AGG + chr7_4:4182823-4182842 Msa1136120:CDS 50.0%
!! CTTTGGAGCTTCCTTCCCAT+TGG + chr7_4:4182977-4182996 Msa1136120:CDS 50.0%
CATGGTACTCTCCAATGGGA+AGG - chr7_4:4182991-4183010 None:intergenic 50.0%
!! CTTCCCATTGGAGAGTACCA+TGG + chr7_4:4182989-4183008 Msa1136120:CDS 50.0%
CGGCTTCAGTTCTTCGAATG+AGG - chr7_4:4183942-4183961 None:intergenic 50.0%
CGTTCACAACGGCATTCCAA+AGG + chr7_4:4183960-4183979 Msa1136120:CDS 50.0%
GGGAAGGAAGCTCCAAAGCA+TGG - chr7_4:4182975-4182994 None:intergenic 55.0%
CAATGATCTTGGGACCGCAG+TGG + chr7_4:4184840-4184859 Msa1136120:CDS 55.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 4180895 4185253 4180895 ID=Msa1136120;Name=Msa1136120
chr7_4 mRNA 4180895 4185253 4180895 ID=Msa1136120-mRNA-1;Parent=Msa1136120;Name=Msa1136120-mRNA-1;_AED=0.35;_eAED=0.35;_QI=0|0|0|0.87|1|1|8|0|575
chr7_4 exon 4180895 4181008 4180895 ID=Msa1136120-mRNA-1:exon:1125;Parent=Msa1136120-mRNA-1
chr7_4 exon 4181089 4181142 4181089 ID=Msa1136120-mRNA-1:exon:1126;Parent=Msa1136120-mRNA-1
chr7_4 exon 4182387 4182660 4182387 ID=Msa1136120-mRNA-1:exon:1127;Parent=Msa1136120-mRNA-1
chr7_4 exon 4182755 4183142 4182755 ID=Msa1136120-mRNA-1:exon:1128;Parent=Msa1136120-mRNA-1
chr7_4 exon 4183763 4183981 4183763 ID=Msa1136120-mRNA-1:exon:1129;Parent=Msa1136120-mRNA-1
chr7_4 exon 4184376 4184517 4184376 ID=Msa1136120-mRNA-1:exon:1130;Parent=Msa1136120-mRNA-1
chr7_4 exon 4184613 4184861 4184613 ID=Msa1136120-mRNA-1:exon:1131;Parent=Msa1136120-mRNA-1
chr7_4 exon 4184966 4185253 4184966 ID=Msa1136120-mRNA-1:exon:1132;Parent=Msa1136120-mRNA-1
chr7_4 CDS 4180895 4181008 4180895 ID=Msa1136120-mRNA-1:cds;Parent=Msa1136120-mRNA-1
chr7_4 CDS 4181089 4181142 4181089 ID=Msa1136120-mRNA-1:cds;Parent=Msa1136120-mRNA-1
chr7_4 CDS 4182387 4182660 4182387 ID=Msa1136120-mRNA-1:cds;Parent=Msa1136120-mRNA-1
chr7_4 CDS 4182755 4183142 4182755 ID=Msa1136120-mRNA-1:cds;Parent=Msa1136120-mRNA-1
chr7_4 CDS 4183763 4183981 4183763 ID=Msa1136120-mRNA-1:cds;Parent=Msa1136120-mRNA-1
chr7_4 CDS 4184376 4184517 4184376 ID=Msa1136120-mRNA-1:cds;Parent=Msa1136120-mRNA-1
chr7_4 CDS 4184613 4184861 4184613 ID=Msa1136120-mRNA-1:cds;Parent=Msa1136120-mRNA-1
chr7_4 CDS 4184966 4185253 4184966 ID=Msa1136120-mRNA-1:cds;Parent=Msa1136120-mRNA-1
Gene Sequence

>Msa1136120

ATGACGAGCACCATAAATCAATCAGACATGAAGGTGGACATGAGAAGGTCTGCAAATTATAGACCCAACATTTGGAAAGACGATTTTCTGCAGTCTCTTGGCAGTAAATATGATGGTTATGTTACAAGACACCCTTTGGCGGTGTCTTTTATCAAGCAACACCTTAAGAAAGAAGAATTTGTTGTGCAGTTAAACAAGTGGGTGATTGAAGTAAAACGCCATTTTGTTCAAGAGTTGGACATTTTGCAAAAATTAGAGTTTGTTGATTGGGTTCAAAAACTAGGCCTTGCCAACCATTTTGAGAAGGAAATAGATGAGTTTCTTGAAACTATATTTATTTCTGCCCTAAACTTCAACAAATTTAGTGTTCAACAAAATATGCACGTGTCTACACTATGCTTCAAGCTTTTAAGGCAACATGGATACAATGTTTTTCCATCCGATATACTAAGCAACTTCTTAGATGTGACGGACAACGCATTTGCTAGTGATGCTAAAGATATTATAGAGCTTCTTGAGGCCTCGCATTTAGGTTTAGAAGATGAAATAATCTTGGATGAGGCCAAAATGTTAGCTAAAAATTGGCTCAAAGATGCTTTCATTTCATATTCTATCAATATCAAAGAATTAGTTCCTATCATGGTTGTTGAAAGAGTGGTCCATGCTTTGGAGCTTCCTTCCCATTGGAGAGTACCATGGTTTGATTTGAAATGGCATGTGAAGCAATACCAAACTAACAAAGACATGGACCATGTTTTACTTGAATTGACAAAATTAAACTTTAACATAACGCAGGCCAAACTTCAAAAAGAGGTCAAAGAATTGTCCAGGTGGTGGGAGAAACTTGGTGTAAAAGAAAACTTGTGTTTTGCAAGAAATAGGTTGGTCGAAAGCTTCATGTGTGCAACTGGGGTTGCTTTTGAGACCAAATATGAATCCTTGAGGAAATGGCTCACTAAAGTGATTATTTTCGTATTAGTGATTGATGATGTTTATGATATACACGCCTCATTCGAAGAACTGAAGCCGTTCACAACGGCATTCCAAAGATGGGATGCCAAAGAAATTGAAGAACTTCCAGATTACATGAAGATTTGCTTCAATGCACTTCAAGATGTCACAAATGAAATTGCTTATGATATTGGAGGAGAAAATAACTTCAATTTTGTGTTACCTTACCTAAAGAAAACGTGGATTGAATTTTGTAAAGCATTATACGTGGAAGCAAAGTGGTACAAAACAGGATATATTCCATCGTTGCAAGAATATTTGAACAATGCATGGATTACATCTTCAGGGCCATTAATTCTACTCCATTCATATTTTGCCACAGTTTATGAATTAACAAATGAGATAGATGATTTTCCACACATATATGATGATTTGGTCTACAATGTGTCTCTCATCATTCGGTTGTGCAATGATCTTGGGACCGCAGTGGCCGAAAGAGAAAGGGGTGATGCAGCTTCGTCAATTCTATGTTATATGAATGAAATGAACGTTTCAGAGGAAGAAGCAAGAAAACATATACAAGACATTATAAACAATGCATGGAAAAGAATTAATGGACACTGCTCCAATCAAGTTGCTTTTATGGAACCATTTTTTAATCAAGCAAGAAATGCAGCACGTGTTGCCCATACTCTTTATTTAAATGGTGATGGGTTTGGTATCCAAGATCGAGATATCAAAAAACACATTTTATCATTAGTTGTTGAACCCTTCTAG
Protein sequence

>Msa1136120

MTSTINQSDMKVDMRRSANYRPNIWKDDFLQSLGSKYDGYVTRHPLAVSFIKQHLKKEEFVVQLNKWVIEVKRHFVQELDILQKLEFVDWVQKLGLANHFEKEIDEFLETIFISALNFNKFSVQQNMHVSTLCFKLLRQHGYNVFPSDILSNFLDVTDNAFASDAKDIIELLEASHLGLEDEIILDEAKMLAKNWLKDAFISYSINIKELVPIMVVERVVHALELPSHWRVPWFDLKWHVKQYQTNKDMDHVLLELTKLNFNITQAKLQKEVKELSRWWEKLGVKENLCFARNRLVESFMCATGVAFETKYESLRKWLTKVIIFVLVIDDVYDIHASFEELKPFTTAFQRWDAKEIEELPDYMKICFNALQDVTNEIAYDIGGENNFNFVLPYLKKTWIEFCKALYVEAKWYKTGYIPSLQEYLNNAWITSSGPLILLHSYFATVYELTNEIDDFPHIYDDLVYNVSLIIRLCNDLGTAVAERERGDAASSILCYMNEMNVSEEEARKHIQDIINNAWKRINGHCSNQVAFMEPFFNQARNAARVAHTLYLNGDGFGIQDRDIKKHILSLVVEPF*