Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1295290 | XP_003629413.1 | 91.892 | 370 | 18 | 1 | 1 | 358 | 1 | 370 | 0.0 | 698 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1295290 | sp|A4ZDG8|BSMT3_PETHY | 55.707 | 368 | 138 | 2 | 1 | 356 | 1 | 355 | 1.04e-144 | 416 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1295290 | G7LDX4 | 91.892 | 370 | 18 | 1 | 1 | 358 | 1 | 370 | 0.0 | 698 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001920 | Msa1295290 | 0.807871 | 4.090974e-50 | -8.615850e-47 |
| Msa0020320 | Msa1295290 | 0.821324 | 4.288622e-53 | -8.615850e-47 |
| Msa0640220 | Msa1295290 | 0.811891 | 5.579672e-51 | -8.615850e-47 |
| Msa0697490 | Msa1295290 | 0.839492 | 1.533764e-57 | -8.615850e-47 |
| Msa0218430 | Msa1295290 | 0.833409 | 5.422290e-56 | -8.615850e-47 |
| Msa1295290 | Msa1295300 | 0.978482 | 6.451048e-146 | -8.615850e-47 |
| Msa1295290 | Msa1460530 | 0.802982 | 4.331752e-49 | -8.615850e-47 |
| Msa0239610 | Msa1295290 | 0.812014 | 5.246896e-51 | -8.615850e-47 |
| Msa1136120 | Msa1295290 | 0.811236 | 7.746213e-51 | -8.615850e-47 |
| Msa1202680 | Msa1295290 | 0.832046 | 1.181683e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1295290 | MtrunA17_Chr8g0372821 | 91.892 | 370 | 18 | 1 | 1 | 358 | 1 | 370 | 0.0 | 698 |
| Msa1295290 | MtrunA17_Chr5g0404631 | 69.106 | 369 | 101 | 2 | 1 | 356 | 11 | 379 | 0.0 | 540 |
| Msa1295290 | MtrunA17_Chr3g0107591 | 68.108 | 370 | 105 | 2 | 1 | 358 | 1 | 369 | 0.0 | 526 |
| Msa1295290 | MtrunA17_Chr4g0008111 | 68.478 | 368 | 93 | 3 | 1 | 356 | 1 | 357 | 0.0 | 509 |
| Msa1295290 | MtrunA17_Chr8g0372671 | 64.946 | 368 | 109 | 2 | 1 | 356 | 1 | 360 | 2.00e-176 | 494 |
| Msa1295290 | MtrunA17_Chr6g0475241 | 60.377 | 371 | 120 | 4 | 1 | 358 | 1 | 357 | 5.62e-156 | 442 |
| Msa1295290 | MtrunA17_Chr6g0475221 | 60.270 | 370 | 119 | 5 | 1 | 358 | 1 | 354 | 3.57e-150 | 427 |
| Msa1295290 | MtrunA17_Chr8g0343971 | 57.724 | 369 | 132 | 3 | 1 | 356 | 1 | 358 | 7.11e-150 | 426 |
| Msa1295290 | MtrunA17_Chr8g0343981 | 56.911 | 369 | 132 | 3 | 1 | 356 | 1 | 355 | 6.96e-148 | 421 |
| Msa1295290 | MtrunA17_Chr3g0144871 | 41.799 | 378 | 187 | 5 | 1 | 356 | 1 | 367 | 1.20e-102 | 307 |
| Msa1295290 | MtrunA17_Chr5g0419851 | 37.701 | 374 | 201 | 4 | 1 | 356 | 61 | 420 | 1.65e-89 | 275 |
| Msa1295290 | MtrunA17_Chr3g0107871 | 39.886 | 351 | 182 | 6 | 24 | 356 | 1 | 340 | 7.99e-84 | 258 |
| Msa1295290 | MtrunA17_Chr7g0252361 | 35.372 | 376 | 212 | 6 | 3 | 358 | 1 | 365 | 9.91e-76 | 238 |
| Msa1295290 | MtrunA17_Chr8g0372801 | 64.662 | 133 | 35 | 1 | 90 | 210 | 31 | 163 | 1.45e-57 | 185 |
| Msa1295290 | MtrunA17_Chr1g0155451 | 42.130 | 216 | 112 | 2 | 147 | 356 | 7 | 215 | 1.74e-56 | 183 |
| Msa1295290 | MtrunA17_Chr3g0100101 | 33.875 | 369 | 188 | 13 | 1 | 334 | 10 | 357 | 3.41e-45 | 159 |
| Msa1295290 | MtrunA17_Chr7g0252501 | 39.024 | 205 | 111 | 4 | 156 | 358 | 38 | 230 | 2.17e-44 | 152 |
| Msa1295290 | MtrunA17_Chr1g0155491 | 47.799 | 159 | 73 | 4 | 1 | 149 | 1 | 159 | 3.33e-43 | 148 |
| Msa1295290 | MtrunA17_Chr5g0444921 | 31.202 | 391 | 219 | 13 | 1 | 355 | 13 | 389 | 2.98e-42 | 151 |
| Msa1295290 | MtrunA17_Chr1g0155461 | 45.912 | 159 | 76 | 4 | 1 | 149 | 1 | 159 | 2.52e-41 | 143 |
| Msa1295290 | MtrunA17_Chr1g0208641 | 30.532 | 357 | 182 | 13 | 32 | 356 | 43 | 365 | 5.20e-41 | 147 |
| Msa1295290 | MtrunA17_Chr1g0155471 | 36.290 | 124 | 71 | 2 | 233 | 356 | 8 | 123 | 4.02e-23 | 93.2 |
| Msa1295290 | MtrunA17_Chr6g0455071 | 39.516 | 124 | 52 | 4 | 137 | 242 | 11 | 129 | 4.35e-23 | 93.2 |
| Msa1295290 | MtrunA17_Chr1g0155481 | 52.564 | 78 | 37 | 0 | 156 | 233 | 22 | 99 | 1.89e-22 | 92.0 |
| Msa1295290 | MtrunA17_Chr3g0099281 | 35.065 | 154 | 92 | 3 | 1 | 146 | 13 | 166 | 2.44e-21 | 90.5 |
| Msa1295290 | MtrunA17_Chr7g0252341 | 38.983 | 118 | 66 | 3 | 34 | 148 | 5 | 119 | 2.91e-20 | 86.3 |
| Msa1295290 | MtrunA17_Chr6g0455081 | 30.345 | 145 | 80 | 3 | 216 | 356 | 2 | 129 | 7.78e-17 | 76.3 |
| Msa1295290 | MtrunA17_Chr3g0099271 | 30.198 | 202 | 117 | 6 | 149 | 339 | 2 | 190 | 1.24e-14 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1295290 | AT1G19640.1 | 42.159 | 389 | 190 | 6 | 1 | 356 | 1 | 387 | 3.44e-98 | 296 |
| Msa1295290 | AT3G11480.1 | 39.459 | 370 | 188 | 7 | 5 | 356 | 27 | 378 | 2.36e-86 | 266 |
| Msa1295290 | AT4G36470.1 | 39.257 | 377 | 187 | 7 | 7 | 357 | 10 | 370 | 4.00e-85 | 262 |
| Msa1295290 | AT5G66430.1 | 37.845 | 362 | 202 | 6 | 9 | 356 | 1 | 353 | 8.87e-84 | 258 |
| Msa1295290 | AT5G04370.1 | 39.782 | 367 | 188 | 7 | 7 | 356 | 39 | 389 | 4.70e-82 | 255 |
| Msa1295290 | AT5G04370.3 | 39.782 | 367 | 188 | 7 | 7 | 356 | 44 | 394 | 1.01e-81 | 254 |
| Msa1295290 | AT5G04370.2 | 39.782 | 367 | 188 | 7 | 7 | 356 | 58 | 408 | 1.08e-81 | 255 |
| Msa1295290 | AT5G04380.3 | 38.315 | 368 | 196 | 7 | 6 | 356 | 35 | 388 | 8.66e-81 | 252 |
| Msa1295290 | AT5G38020.1 | 39.623 | 371 | 198 | 7 | 6 | 356 | 3 | 367 | 1.12e-80 | 251 |
| Msa1295290 | AT3G21950.1 | 39.200 | 375 | 194 | 9 | 6 | 356 | 3 | 367 | 9.88e-79 | 246 |
| Msa1295290 | AT5G04380.1 | 37.772 | 368 | 191 | 8 | 6 | 356 | 31 | 377 | 1.06e-76 | 241 |
| Msa1295290 | AT5G04380.2 | 38.199 | 322 | 175 | 5 | 48 | 356 | 7 | 317 | 2.21e-74 | 233 |
| Msa1295290 | AT3G21950.2 | 36.364 | 407 | 193 | 10 | 6 | 356 | 3 | 399 | 8.07e-73 | 232 |
| Msa1295290 | AT2G14060.1 | 35.121 | 373 | 208 | 6 | 6 | 356 | 11 | 371 | 7.10e-72 | 228 |
| Msa1295290 | AT5G38020.2 | 39.091 | 330 | 176 | 6 | 46 | 356 | 5 | 328 | 1.52e-71 | 226 |
| Msa1295290 | AT1G68040.1 | 34.054 | 370 | 193 | 9 | 3 | 347 | 7 | 350 | 2.45e-59 | 196 |
| Msa1295290 | AT2G14060.2 | 39.912 | 228 | 121 | 3 | 6 | 220 | 11 | 235 | 2.05e-53 | 177 |
| Msa1295290 | AT5G55250.1 | 32.791 | 369 | 191 | 13 | 1 | 333 | 13 | 360 | 3.13e-47 | 165 |
| Msa1295290 | AT1G15125.1 | 29.867 | 375 | 208 | 12 | 9 | 356 | 1 | 347 | 9.34e-43 | 152 |
| Msa1295290 | AT5G37990.1 | 32.300 | 387 | 196 | 15 | 5 | 356 | 6 | 361 | 6.45e-41 | 147 |
| Msa1295290 | AT5G38100.1 | 31.452 | 372 | 194 | 11 | 4 | 347 | 5 | 343 | 1.10e-40 | 147 |
| Msa1295290 | AT5G38780.1 | 31.148 | 366 | 193 | 11 | 4 | 339 | 5 | 341 | 1.40e-40 | 146 |
| Msa1295290 | AT4G26420.1 | 33.333 | 363 | 190 | 14 | 3 | 332 | 7 | 350 | 2.74e-40 | 146 |
| Msa1295290 | AT5G56300.1 | 29.363 | 361 | 208 | 10 | 3 | 333 | 18 | 361 | 5.51e-40 | 145 |
| Msa1295290 | AT5G55250.2 | 31.595 | 326 | 170 | 10 | 41 | 333 | 17 | 322 | 2.00e-39 | 143 |
| Msa1295290 | AT5G38780.2 | 32.588 | 313 | 156 | 10 | 50 | 336 | 6 | 289 | 8.14e-39 | 140 |
| Msa1295290 | AT5G38100.3 | 32.710 | 321 | 162 | 9 | 41 | 336 | 22 | 313 | 4.76e-38 | 139 |
| Msa1295290 | AT5G37970.1 | 29.870 | 385 | 208 | 11 | 5 | 356 | 6 | 361 | 7.23e-38 | 139 |
| Msa1295290 | AT3G44840.1 | 30.194 | 361 | 193 | 11 | 3 | 336 | 1 | 329 | 1.94e-36 | 135 |
| Msa1295290 | AT1G66720.1 | 31.667 | 300 | 164 | 11 | 9 | 282 | 9 | 293 | 1.70e-33 | 127 |
| Msa1295290 | AT3G44860.1 | 33.916 | 286 | 158 | 7 | 3 | 269 | 1 | 274 | 2.21e-33 | 127 |
| Msa1295290 | AT3G44870.1 | 33.916 | 286 | 155 | 8 | 3 | 269 | 1 | 271 | 5.24e-33 | 127 |
| Msa1295290 | AT1G66700.1 | 30.717 | 293 | 149 | 8 | 9 | 269 | 9 | 279 | 5.41e-32 | 123 |
| Msa1295290 | AT4G26420.3 | 36.364 | 231 | 111 | 9 | 3 | 208 | 7 | 226 | 1.58e-31 | 120 |
| Msa1295290 | AT4G26420.2 | 36.444 | 225 | 107 | 9 | 9 | 208 | 1 | 214 | 6.62e-30 | 115 |
| Msa1295290 | AT5G38100.2 | 35.426 | 223 | 108 | 7 | 4 | 201 | 5 | 216 | 5.33e-27 | 107 |
| Msa1295290 | AT5G38100.4 | 35.426 | 223 | 108 | 7 | 4 | 201 | 5 | 216 | 7.81e-27 | 107 |
| Msa1295290 | AT1G66690.1 | 30.769 | 299 | 157 | 8 | 1 | 269 | 1 | 279 | 1.33e-26 | 108 |
| Msa1295290 | AT1G15125.2 | 32.420 | 219 | 113 | 7 | 9 | 205 | 1 | 206 | 4.08e-26 | 105 |
| Msa1295290 | AT1G66700.3 | 30.350 | 257 | 125 | 8 | 9 | 233 | 9 | 243 | 1.60e-24 | 101 |
Find 76 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAGACTTGGGTTGCTCTTC+TGG | 0.124180 | 8_3:-53363499 | Msa1295290:CDS |
| TCTAAATATATTGGGGAAAA+TGG | 0.160397 | 8_3:+53361713 | None:intergenic |
| CCACAACTTTCTAAATATAT+TGG | 0.193245 | 8_3:+53361704 | None:intergenic |
| TCTGCAATTCCTAAGCTATT+TGG | 0.193298 | 8_3:+53363517 | None:intergenic |
| CACAACTTTCTAAATATATT+GGG | 0.228990 | 8_3:+53361705 | None:intergenic |
| GGAGTTCCTGGTTCTTTCTA+TGG | 0.263034 | 8_3:-53363271 | Msa1295290:CDS |
| GTTCAAGAAAACCTTGTATT+CGG | 0.272656 | 8_3:+53363399 | None:intergenic |
| GCAAGGAGTGTTGCTACATT+TGG | 0.284975 | 8_3:-53362604 | Msa1295290:CDS |
| TTGCTACATTTGGGAACTTA+TGG | 0.286140 | 8_3:-53362594 | Msa1295290:CDS |
| GATTATGGCTTCTTCTCTAA+TGG | 0.308035 | 8_3:+53363561 | None:intergenic |
| CTGCAATTCCTAAGCTATTT+GGG | 0.311964 | 8_3:+53363518 | None:intergenic |
| TGCTATATATCTGGAGTTCC+TGG | 0.312996 | 8_3:-53363283 | Msa1295290:CDS |
| TCTTAATGATATGGTCTTGC+AGG | 0.323770 | 8_3:-53362564 | Msa1295290:intron |
| GGAGAATGTGAACAACAATA+AGG | 0.339279 | 8_3:-53362792 | Msa1295290:CDS |
| GGCTATAGCTCTTAATGATA+TGG | 0.347430 | 8_3:-53362573 | Msa1295290:CDS |
| TTCTGGACCAAACACTTTGT+TGG | 0.351191 | 8_3:-53363482 | Msa1295290:CDS |
| ACAAAATGCAAACTTTGATT+AGG | 0.356644 | 8_3:+53363238 | None:intergenic |
| ATGGATCAGTGCTATATATC+TGG | 0.358943 | 8_3:-53363292 | Msa1295290:CDS |
| GTGTCCATCGGAAGTGAAAT+TGG | 0.373571 | 8_3:-53362061 | Msa1295290:CDS |
| CAAGGAGTGTTGCTACATTT+GGG | 0.384196 | 8_3:-53362603 | Msa1295290:CDS |
| TTCAAGAAAACCTTGTATTC+GGG | 0.384731 | 8_3:+53363400 | None:intergenic |
| ACTACAGTAGAGACTGATTA+TGG | 0.390022 | 8_3:+53363546 | None:intergenic |
| CATAGCTAAGAACTAATATC+TGG | 0.397399 | 8_3:+53361469 | None:intergenic |
| ATCATTTACCATCGATCGAT+TGG | 0.399987 | 8_3:-53362022 | Msa1295290:CDS |
| TGCAAACAACTCCTTAGTTC+AGG | 0.408183 | 8_3:-53363863 | Msa1295290:intron |
| TTCCTGGTTCTTTCTATGGC+AGG | 0.412204 | 8_3:-53363267 | Msa1295290:CDS |
| TCATTTACCATCGATCGATT+GGG | 0.423277 | 8_3:-53362021 | Msa1295290:CDS |
| TTATTGTTGTTCACATTCTC+CGG | 0.423470 | 8_3:+53362794 | None:intergenic |
| ATCAGAATTTATCAAGGTTG+TGG | 0.432422 | 8_3:-53363455 | Msa1295290:CDS |
| AGGATTTCTAGTCAATAATA+CGG | 0.440066 | 8_3:+53361762 | None:intergenic |
| GATACCACCAACAAAGTGTT+TGG | 0.447192 | 8_3:+53363475 | None:intergenic |
| CCTTTGCTAATTAGCCACTT+TGG | 0.456393 | 8_3:-53361874 | Msa1295290:CDS |
| TATGCATTAAGTACATTTGA+GGG | 0.463714 | 8_3:+53362743 | None:intergenic |
| AGAAAGTTGTGGTGTGTTGT+TGG | 0.472283 | 8_3:-53361693 | Msa1295290:three_prime_UTR |
| GAGAATGTGAACAACAATAA+GGG | 0.486332 | 8_3:-53362791 | Msa1295290:CDS |
| ATTGGAATGCTCTCGATCAA+TGG | 0.490851 | 8_3:-53361984 | Msa1295290:CDS |
| ATAAATTTATTATACAACTT+AGG | 0.490974 | 8_3:+53361559 | None:intergenic |
| TAGCTTAGGAATTGCAGACT+TGG | 0.496344 | 8_3:-53363512 | Msa1295290:CDS |
| GTATGCATTAAGTACATTTG+AGG | 0.501880 | 8_3:+53362742 | None:intergenic |
| TGGACCAAACACTTTGTTGG+TGG | 0.504941 | 8_3:-53363479 | Msa1295290:CDS |
| AGCTTAGGAATTGCAGACTT+GGG | 0.505553 | 8_3:-53363511 | Msa1295290:CDS |
| GGTGGTATCAGAATTTATCA+AGG | 0.507106 | 8_3:-53363461 | Msa1295290:CDS |
| TCGTGAATCTCCCGAATACA+AGG | 0.518497 | 8_3:-53363410 | Msa1295290:CDS |
| CCAATATATTTAGAAAGTTG+TGG | 0.520390 | 8_3:-53361704 | Msa1295290:three_prime_UTR |
| ATCAAGAAATCTTAGTTGAT+CGG | 0.522974 | 8_3:-53361819 | Msa1295290:CDS |
| ATGGACACGGAGTGTATTGA+GGG | 0.523168 | 8_3:+53362076 | None:intergenic |
| CATTTACCATCGATCGATTG+GGG | 0.529876 | 8_3:-53362020 | Msa1295290:CDS |
| CGTGCAGAGGAAGTAGTTGA+AGG | 0.533351 | 8_3:-53362677 | Msa1295290:CDS |
| AGTACATACCCAAATAGCTT+AGG | 0.536677 | 8_3:-53363526 | Msa1295290:CDS |
| ACTTCCAATTTCACTTCCGA+TGG | 0.537214 | 8_3:+53362057 | None:intergenic |
| TCACAAGTACTGCACATGAA+TGG | 0.538311 | 8_3:-53363907 | Msa1295290:CDS |
| GATGGACACGGAGTGTATTG+AGG | 0.546758 | 8_3:+53362075 | None:intergenic |
| ATTCATGTATACCTGAACTA+AGG | 0.548252 | 8_3:+53363852 | None:intergenic |
| CAATAAGGGAAACATTTACA+TGG | 0.550411 | 8_3:-53362777 | Msa1295290:CDS |
| TATAATAAATTTATTTACGT+GGG | 0.555325 | 8_3:-53361550 | Msa1295290:three_prime_UTR |
| ACAACTTTCTAAATATATTG+GGG | 0.568794 | 8_3:+53361706 | None:intergenic |
| AAATTGGAAGTTCTCAAAGA+AGG | 0.571795 | 8_3:-53362045 | Msa1295290:CDS |
| CTGCACATGAATGGAGGTGT+TGG | 0.572205 | 8_3:-53363898 | Msa1295290:CDS |
| ATGTTATTGAAGTCGTTACC+CGG | 0.575424 | 8_3:+53363370 | None:intergenic |
| GTGCAGAGGAAGTAGTTGAA+GGG | 0.581334 | 8_3:-53362676 | Msa1295290:CDS |
| GTATAATAAATTTATTTACG+TGG | 0.581663 | 8_3:-53361551 | Msa1295290:three_prime_UTR |
| ATGTCTGAATCACTCGGCGA+TGG | 0.582272 | 8_3:-53361937 | Msa1295290:CDS |
| AATTAGCAAAGGTTCAGAAA+CGG | 0.583320 | 8_3:+53361885 | None:intergenic |
| AATTTCACTTCCGATGGACA+CGG | 0.587997 | 8_3:+53362063 | None:intergenic |
| TCAATACACTCCGTGTCCAT+CGG | 0.588900 | 8_3:-53362073 | Msa1295290:CDS |
| CCAAAGTGGCTAATTAGCAA+AGG | 0.591173 | 8_3:+53361874 | None:intergenic |
| CTTAGTTGATCGGATGTCCA+AGG | 0.603686 | 8_3:-53361809 | Msa1295290:CDS |
| ATCCTGCCATAGAAAGAACC+AGG | 0.607110 | 8_3:+53363265 | None:intergenic |
| TGCAGAGGAAGTAGTTGAAG+GGG | 0.612981 | 8_3:-53362675 | Msa1295290:CDS |
| CAATGATAGACTCTCCAAAG+TGG | 0.620746 | 8_3:+53361860 | None:intergenic |
| TCTCAAATGTCTGAATCACT+CGG | 0.620788 | 8_3:-53361943 | Msa1295290:CDS |
| AAGTGACAAGATGTATAGCA+AGG | 0.623819 | 8_3:-53362621 | Msa1295290:CDS |
| ATGCATTAAGTACATTTGAG+GGG | 0.624171 | 8_3:+53362744 | None:intergenic |
| ATTTACCATCGATCGATTGG+GGG | 0.660045 | 8_3:-53362019 | Msa1295290:CDS |
| CAAGTACTGCACATGAATGG+AGG | 0.661451 | 8_3:-53363904 | Msa1295290:CDS |
| GCAGAGGAAGTAGTTGAAGG+GGG | 0.713278 | 8_3:-53362674 | Msa1295290:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GCATATAATATTTTTTTTTA+AGG | - | chr8_3:53361769-53361788 | Msa1295290:CDS | 10.0% |
| !! | AAATCCTTAAAAAATTATTA+GGG | - | chr8_3:53363684-53363703 | Msa1295290:intron | 10.0% |
| !! | ATAAATTTATTATACAACTT+AGG | + | chr8_3:53363874-53363893 | None:intergenic | 10.0% |
| !! | TATAATAAATTTATTTACGT+GGG | - | chr8_3:53363880-53363899 | Msa1295290:CDS | 10.0% |
| !! | ATTATATATGAACACATAAT+AGG | + | chr8_3:53361652-53361671 | None:intergenic | 15.0% |
| !! | GAAATTACATATTAATATCT+TGG | + | chr8_3:53363279-53363298 | None:intergenic | 15.0% |
| !! | GAAATCCTTAAAAAATTATT+AGG | - | chr8_3:53363683-53363702 | Msa1295290:intron | 15.0% |
| !!! | TAAACCCTAATAATTTTTTA+AGG | + | chr8_3:53363691-53363710 | None:intergenic | 15.0% |
| !! | GTATAATAAATTTATTTACG+TGG | - | chr8_3:53363879-53363898 | Msa1295290:CDS | 15.0% |
| !! | AATGCTATATATAACAGAAT+CGG | + | chr8_3:53361680-53361699 | None:intergenic | 20.0% |
| !!! | GTTTTTGTAATTGATGTAAT+TGG | - | chr8_3:53361809-53361828 | Msa1295290:CDS | 20.0% |
| !! | GTAAATGTATATGTTGTTAT+TGG | - | chr8_3:53362966-53362985 | Msa1295290:intron | 20.0% |
| !! | TTAAAATATGCACTATCTTT+AGG | - | chr8_3:53363142-53363161 | Msa1295290:intron | 20.0% |
| !! | TAAAATATGCACTATCTTTA+GGG | - | chr8_3:53363143-53363162 | Msa1295290:intron | 20.0% |
| !! | TTAATTATATTTAGGGACAA+AGG | - | chr8_3:53363203-53363222 | Msa1295290:intron | 20.0% |
| !!! | TATGTAATTTCTTTTCTATG+TGG | - | chr8_3:53363288-53363307 | Msa1295290:CDS | 20.0% |
| !! | ACAACTTTCTAAATATATTG+GGG | + | chr8_3:53363727-53363746 | None:intergenic | 20.0% |
| !! | CACAACTTTCTAAATATATT+GGG | + | chr8_3:53363728-53363747 | None:intergenic | 20.0% |
| !! | GTGATTTAAAAAAAAACACA+TGG | - | chr8_3:53363795-53363814 | Msa1295290:intron | 20.0% |
| ! | ATGCTATATATAACAGAATC+GGG | + | chr8_3:53361679-53361698 | None:intergenic | 25.0% |
| !! | CTTTATTATTTTCAGCTAGA+AGG | + | chr8_3:53361739-53361758 | None:intergenic | 25.0% |
| ! | ACAAAATGCAAACTTTGATT+AGG | + | chr8_3:53362195-53362214 | None:intergenic | 25.0% |
| !!! | TATTTTTGTGTCTTAGTCAA+TGG | - | chr8_3:53362282-53362301 | Msa1295290:intron | 25.0% |
| ! | TAAGATGAAAAATCAACTGA+GGG | + | chr8_3:53362457-53362476 | None:intergenic | 25.0% |
| ! | ATAAGATGAAAAATCAACTG+AGG | + | chr8_3:53362458-53362477 | None:intergenic | 25.0% |
| ! | TATGCATTAAGTACATTTGA+GGG | + | chr8_3:53362690-53362709 | None:intergenic | 25.0% |
| !!! | GAGAAAAATCTCTTTGAAAT+TGG | + | chr8_3:53362719-53362738 | None:intergenic | 25.0% |
| ! | TCCTAAATATAATGTGTTAG+TGG | - | chr8_3:53362901-53362920 | Msa1295290:intron | 25.0% |
| ! | ACCACTAACACATTATATTT+AGG | + | chr8_3:53362905-53362924 | None:intergenic | 25.0% |
| !! | ATTTCTTTTCTATGTGGATT+AGG | - | chr8_3:53363294-53363313 | Msa1295290:CDS | 25.0% |
| !!! | TTTCTTTTCTATGTGGATTA+GGG | - | chr8_3:53363295-53363314 | Msa1295290:CDS | 25.0% |
| ! | ATCAAGAAATCTTAGTTGAT+CGG | - | chr8_3:53363611-53363630 | Msa1295290:intron | 25.0% |
| !!! | AGGATTTCTAGTCAATAATA+CGG | + | chr8_3:53363671-53363690 | None:intergenic | 25.0% |
| ! | TCTAAATATATTGGGGAAAA+TGG | + | chr8_3:53363720-53363739 | None:intergenic | 25.0% |
| ! | CCACAACTTTCTAAATATAT+TGG | + | chr8_3:53363729-53363748 | None:intergenic | 25.0% |
| ! | CCAATATATTTAGAAAGTTG+TGG | - | chr8_3:53363726-53363745 | Msa1295290:intron | 25.0% |
| !! | TTTCATATCGCCAAATTTTT+AGG | - | chr8_3:53363929-53363948 | Msa1295290:exon | 25.0% |
| !! | TTCATATCGCCAAATTTTTA+GGG | - | chr8_3:53363930-53363949 | Msa1295290:exon | 25.0% |
| ATTCATGTATACCTGAACTA+AGG | + | chr8_3:53361581-53361600 | None:intergenic | 30.0% | |
| ATCAGAATTTATCAAGGTTG+TGG | - | chr8_3:53361975-53361994 | Msa1295290:CDS | 30.0% | |
| TTCAAGAAAACCTTGTATTC+GGG | + | chr8_3:53362033-53362052 | None:intergenic | 30.0% | |
| GTTCAAGAAAACCTTGTATT+CGG | + | chr8_3:53362034-53362053 | None:intergenic | 30.0% | |
| !! | TTGTTGGTTGGTGATTATTT+AGG | - | chr8_3:53362611-53362630 | Msa1295290:CDS | 30.0% |
| ! | TTATTGTTGTTCACATTCTC+CGG | + | chr8_3:53362639-53362658 | None:intergenic | 30.0% |
| GAGAATGTGAACAACAATAA+GGG | - | chr8_3:53362639-53362658 | Msa1295290:CDS | 30.0% | |
| CAATAAGGGAAACATTTACA+TGG | - | chr8_3:53362653-53362672 | Msa1295290:CDS | 30.0% | |
| ATGCATTAAGTACATTTGAG+GGG | + | chr8_3:53362689-53362708 | None:intergenic | 30.0% | |
| GTATGCATTAAGTACATTTG+AGG | + | chr8_3:53362691-53362710 | None:intergenic | 30.0% | |
| ! | CGCATGATTCTAACATTTTT+AGG | - | chr8_3:53362780-53362799 | Msa1295290:CDS | 30.0% |
| ! | ATCAAGCTTCTCTTCTTTTA+TGG | + | chr8_3:53363323-53363342 | None:intergenic | 30.0% |
| AAATTGGAAGTTCTCAAAGA+AGG | - | chr8_3:53363385-53363404 | Msa1295290:CDS | 30.0% | |
| AATTAGCAAAGGTTCAGAAA+CGG | + | chr8_3:53363548-53363567 | None:intergenic | 30.0% | |
| ! | TGGCGATATGAAATTTTACA+TGG | + | chr8_3:53363922-53363941 | None:intergenic | 30.0% |
| !! | TCATATCGCCAAATTTTTAG+GGG | - | chr8_3:53363931-53363950 | Msa1295290:exon | 30.0% |
| CATAGCTAAGAACTAATATC+TGG | + | chr8_3:53363964-53363983 | None:intergenic | 30.0% | |
| GATTATGGCTTCTTCTCTAA+TGG | + | chr8_3:53361872-53361891 | None:intergenic | 35.0% | |
| ACTACAGTAGAGACTGATTA+TGG | + | chr8_3:53361887-53361906 | None:intergenic | 35.0% | |
| AGTACATACCCAAATAGCTT+AGG | - | chr8_3:53361904-53361923 | Msa1295290:CDS | 35.0% | |
| CTGCAATTCCTAAGCTATTT+GGG | + | chr8_3:53361915-53361934 | None:intergenic | 35.0% | |
| TCTGCAATTCCTAAGCTATT+TGG | + | chr8_3:53361916-53361935 | None:intergenic | 35.0% | |
| GGTGGTATCAGAATTTATCA+AGG | - | chr8_3:53361969-53361988 | Msa1295290:CDS | 35.0% | |
| ATGTTATTGAAGTCGTTACC+CGG | + | chr8_3:53362063-53362082 | None:intergenic | 35.0% | |
| CGGTGAAAAAGAAACTGAAA+TGG | - | chr8_3:53362119-53362138 | Msa1295290:intron | 35.0% | |
| ATGGATCAGTGCTATATATC+TGG | - | chr8_3:53362138-53362157 | Msa1295290:intron | 35.0% | |
| AAACCTTAGATAGCCACATA+AGG | + | chr8_3:53362233-53362252 | None:intergenic | 35.0% | |
| AATCCTTAACATGTGCCATA+GGG | - | chr8_3:53362424-53362443 | Msa1295290:intron | 35.0% | |
| !! | ATGGTGGAGAACATTTTTGT+TGG | - | chr8_3:53362595-53362614 | Msa1295290:CDS | 35.0% |
| ! | TGGAGAACATTTTTGTTGGT+TGG | - | chr8_3:53362599-53362618 | Msa1295290:CDS | 35.0% |
| !! | GTTGGTGATTATTTAGGTTC+CGG | - | chr8_3:53362617-53362636 | Msa1295290:CDS | 35.0% |
| GGAGAATGTGAACAACAATA+AGG | - | chr8_3:53362638-53362657 | Msa1295290:CDS | 35.0% | |
| AAGTGACAAGATGTATAGCA+AGG | - | chr8_3:53362809-53362828 | Msa1295290:intron | 35.0% | |
| TTGCTACATTTGGGAACTTA+TGG | - | chr8_3:53362836-53362855 | Msa1295290:intron | 35.0% | |
| GGCTATAGCTCTTAATGATA+TGG | - | chr8_3:53362857-53362876 | Msa1295290:intron | 35.0% | |
| ! | TCTTAATGATATGGTCTTGC+AGG | - | chr8_3:53362866-53362885 | Msa1295290:intron | 35.0% |
| ATCATTTACCATCGATCGAT+TGG | - | chr8_3:53363408-53363427 | Msa1295290:CDS | 35.0% | |
| TCATTTACCATCGATCGATT+GGG | - | chr8_3:53363409-53363428 | Msa1295290:CDS | 35.0% | |
| TCTCAAATGTCTGAATCACT+CGG | - | chr8_3:53363487-53363506 | Msa1295290:CDS | 35.0% | |
| !! | GACAAACTTAGTTTTCTCCT+TGG | + | chr8_3:53363641-53363660 | None:intergenic | 35.0% |
| GCGATATTCCCCTAAAAATT+TGG | + | chr8_3:53363942-53363961 | None:intergenic | 35.0% | |
| ! | TCACAAGTACTGCACATGAA+TGG | - | chr8_3:53361523-53361542 | Msa1295290:three_prime_UTR | 40.0% |
| TGCAAACAACTCCTTAGTTC+AGG | - | chr8_3:53361567-53361586 | Msa1295290:three_prime_UTR | 40.0% | |
| TAGCTTAGGAATTGCAGACT+TGG | - | chr8_3:53361918-53361937 | Msa1295290:CDS | 40.0% | |
| AGCTTAGGAATTGCAGACTT+GGG | - | chr8_3:53361919-53361938 | Msa1295290:CDS | 40.0% | |
| TTCTGGACCAAACACTTTGT+TGG | - | chr8_3:53361948-53361967 | Msa1295290:CDS | 40.0% | |
| ! | GATACCACCAACAAAGTGTT+TGG | + | chr8_3:53361958-53361977 | None:intergenic | 40.0% |
| ! | GGTTTTCTTGAACGATTTGC+CGG | - | chr8_3:53362041-53362060 | Msa1295290:CDS | 40.0% |
| ! | GTTTTCTTGAACGATTTGCC+GGG | - | chr8_3:53362042-53362061 | Msa1295290:CDS | 40.0% |
| AACTTCAAAAAGAGACTGCG+CGG | - | chr8_3:53362099-53362118 | Msa1295290:CDS | 40.0% | |
| ! | TGCTATATATCTGGAGTTCC+TGG | - | chr8_3:53362147-53362166 | Msa1295290:intron | 40.0% |
| ACATAAGGCTGTAAGAGGAA+TGG | + | chr8_3:53362218-53362237 | None:intergenic | 40.0% | |
| ! | ATTCCTCTTACAGCCTTATG+TGG | - | chr8_3:53362217-53362236 | Msa1295290:intron | 40.0% |
| GAATCCTTAACATGTGCCAT+AGG | - | chr8_3:53362423-53362442 | Msa1295290:intron | 40.0% | |
| GACGAATGAGTTGCTTAACA+TGG | - | chr8_3:53362576-53362595 | Msa1295290:CDS | 40.0% | |
| GAATGAGTTGCTTAACATGG+TGG | - | chr8_3:53362579-53362598 | Msa1295290:CDS | 40.0% | |
| !! | CAAGGAGTGTTGCTACATTT+GGG | - | chr8_3:53362827-53362846 | Msa1295290:intron | 40.0% |
| AATTTCACTTCCGATGGACA+CGG | + | chr8_3:53363370-53363389 | None:intergenic | 40.0% | |
| ACTTCCAATTTCACTTCCGA+TGG | + | chr8_3:53363376-53363395 | None:intergenic | 40.0% | |
| CATTTACCATCGATCGATTG+GGG | - | chr8_3:53363410-53363429 | Msa1295290:CDS | 40.0% | |
| ATTTACCATCGATCGATTGG+GGG | - | chr8_3:53363411-53363430 | Msa1295290:CDS | 40.0% | |
| ATTGGAATGCTCTCGATCAA+TGG | - | chr8_3:53363446-53363465 | Msa1295290:CDS | 40.0% | |
| CCAAAGTGGCTAATTAGCAA+AGG | + | chr8_3:53363559-53363578 | None:intergenic | 40.0% | |
| CCTTTGCTAATTAGCCACTT+TGG | - | chr8_3:53363556-53363575 | Msa1295290:CDS | 40.0% | |
| CAATGATAGACTCTCCAAAG+TGG | + | chr8_3:53363573-53363592 | None:intergenic | 40.0% | |
| AGAAAGTTGTGGTGTGTTGT+TGG | - | chr8_3:53363737-53363756 | Msa1295290:intron | 40.0% | |
| ! | CAAGTACTGCACATGAATGG+AGG | - | chr8_3:53361526-53361545 | Msa1295290:three_prime_UTR | 45.0% |
| TGGACCAAACACTTTGTTGG+TGG | - | chr8_3:53361951-53361970 | Msa1295290:CDS | 45.0% | |
| TCGTGAATCTCCCGAATACA+AGG | - | chr8_3:53362020-53362039 | Msa1295290:CDS | 45.0% | |
| ! | GGAGTTCCTGGTTCTTTCTA+TGG | - | chr8_3:53362159-53362178 | Msa1295290:intron | 45.0% |
| ! | TTCCTGGTTCTTTCTATGGC+AGG | - | chr8_3:53362163-53362182 | Msa1295290:intron | 45.0% |
| ATCCTGCCATAGAAAGAACC+AGG | + | chr8_3:53362168-53362187 | None:intergenic | 45.0% | |
| TAGCCACATAAGGCTGTAAG+AGG | + | chr8_3:53362223-53362242 | None:intergenic | 45.0% | |
| ! | CAGCCTTATGTGGCTATCTA+AGG | - | chr8_3:53362227-53362246 | Msa1295290:intron | 45.0% |
| !! | TTTTCTCAAGTGTCGTGCAG+AGG | - | chr8_3:53362740-53362759 | Msa1295290:CDS | 45.0% |
| GTGCAGAGGAAGTAGTTGAA+GGG | - | chr8_3:53362754-53362773 | Msa1295290:CDS | 45.0% | |
| TGCAGAGGAAGTAGTTGAAG+GGG | - | chr8_3:53362755-53362774 | Msa1295290:CDS | 45.0% | |
| !! | GCAAGGAGTGTTGCTACATT+TGG | - | chr8_3:53362826-53362845 | Msa1295290:intron | 45.0% |
| ATGGACACGGAGTGTATTGA+GGG | + | chr8_3:53363357-53363376 | None:intergenic | 45.0% | |
| TCAATACACTCCGTGTCCAT+CGG | - | chr8_3:53363357-53363376 | Msa1295290:CDS | 45.0% | |
| GTGTCCATCGGAAGTGAAAT+TGG | - | chr8_3:53363369-53363388 | Msa1295290:CDS | 45.0% | |
| !! | TGGGGGTTTCTGAAGTGAAT+TGG | - | chr8_3:53363428-53363447 | Msa1295290:CDS | 45.0% |
| CTTAGTTGATCGGATGTCCA+AGG | - | chr8_3:53363621-53363640 | Msa1295290:intron | 45.0% | |
| !!! | CATATAATATTTTTTTTTAA+GGG | - | chr8_3:53361770-53361789 | Msa1295290:CDS | 5.0% |
| !! | AAAAAAACTTAATTATATTT+AGG | - | chr8_3:53363195-53363214 | Msa1295290:intron | 5.0% |
| !! | AAAAAACTTAATTATATTTA+GGG | - | chr8_3:53363196-53363215 | Msa1295290:intron | 5.0% |
| ! | CTGCACATGAATGGAGGTGT+TGG | - | chr8_3:53361532-53361551 | Msa1295290:three_prime_UTR | 50.0% |
| GTGCCCTATGGCACATGTTA+AGG | + | chr8_3:53362430-53362449 | None:intergenic | 50.0% | |
| CGTGCAGAGGAAGTAGTTGA+AGG | - | chr8_3:53362753-53362772 | Msa1295290:CDS | 50.0% | |
| GCAGAGGAAGTAGTTGAAGG+GGG | - | chr8_3:53362756-53362775 | Msa1295290:CDS | 50.0% | |
| GATGGACACGGAGTGTATTG+AGG | + | chr8_3:53363358-53363377 | None:intergenic | 50.0% | |
| AGAAACCCCCAATCGATCGA+TGG | + | chr8_3:53363419-53363438 | None:intergenic | 50.0% | |
| ATGTCTGAATCACTCGGCGA+TGG | - | chr8_3:53363493-53363512 | Msa1295290:CDS | 50.0% | |
| ! | GCAGACTTGGGTTGCTCTTC+TGG | - | chr8_3:53361931-53361950 | Msa1295290:CDS | 55.0% |
| ACTGAGGGTCATGTGCCCTA+TGG | + | chr8_3:53362442-53362461 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 53361455 | 53363997 | 53361455 | ID=Msa1295290;Name=Msa1295290 |
| chr8_3 | mRNA | 53361455 | 53363997 | 53361455 | ID=Msa1295290-mRNA-1;Parent=Msa1295290;Name=Msa1295290-mRNA-1;_AED=0.24;_eAED=0.24;_QI=59|0.66|0.75|1|1|1|4|304|358 |
| chr8_3 | exon | 53361455 | 53362136 | 53361455 | ID=Msa1295290-mRNA-1:exon:15301;Parent=Msa1295290-mRNA-1 |
| chr8_3 | exon | 53362565 | 53362819 | 53362565 | ID=Msa1295290-mRNA-1:exon:15300;Parent=Msa1295290-mRNA-1 |
| chr8_3 | exon | 53363240 | 53363608 | 53363240 | ID=Msa1295290-mRNA-1:exon:15299;Parent=Msa1295290-mRNA-1 |
| chr8_3 | exon | 53363864 | 53363997 | 53363864 | ID=Msa1295290-mRNA-1:exon:15298;Parent=Msa1295290-mRNA-1 |
| chr8_3 | five_prime_UTR | 53363939 | 53363997 | 53363939 | ID=Msa1295290-mRNA-1:five_prime_utr;Parent=Msa1295290-mRNA-1 |
| chr8_3 | CDS | 53363864 | 53363938 | 53363864 | ID=Msa1295290-mRNA-1:cds;Parent=Msa1295290-mRNA-1 |
| chr8_3 | CDS | 53363240 | 53363608 | 53363240 | ID=Msa1295290-mRNA-1:cds;Parent=Msa1295290-mRNA-1 |
| chr8_3 | CDS | 53362565 | 53362819 | 53362565 | ID=Msa1295290-mRNA-1:cds;Parent=Msa1295290-mRNA-1 |
| chr8_3 | CDS | 53361759 | 53362136 | 53361759 | ID=Msa1295290-mRNA-1:cds;Parent=Msa1295290-mRNA-1 |
| chr8_3 | three_prime_UTR | 53361455 | 53361758 | 53361455 | ID=Msa1295290-mRNA-1:three_prime_utr;Parent=Msa1295290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
