Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0002390 | sp|Q8RYD1|REM16_ARATH | 32.597 | 362 | 173 | 10 | 9 | 366 | 11 | 305 | 1.94e-47 | 168 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0002390 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002390 | Msa0051180 | 0.967942 | 5.613654e-128 | -8.615850e-47 |
| Msa0002390 | Msa0051280 | 0.946083 | 9.069370e-105 | -8.615850e-47 |
| Msa0002390 | Msa0145460 | 0.865727 | 4.788328e-65 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0002390 | MtrunA17_Chr1g0154211 | 95.750 | 400 | 16 | 1 | 1 | 400 | 1 | 399 | 0.0 | 794 |
| Msa0002390 | MtrunA17_Chr1g0154111 | 67.105 | 380 | 98 | 5 | 6 | 382 | 9 | 364 | 6.67e-175 | 501 |
| Msa0002390 | MtrunA17_Chr1g0154111 | 56.710 | 231 | 60 | 6 | 38 | 255 | 368 | 571 | 1.35e-68 | 227 |
| Msa0002390 | MtrunA17_Chr1g0154101 | 58.352 | 449 | 116 | 6 | 7 | 388 | 168 | 612 | 4.28e-170 | 497 |
| Msa0002390 | MtrunA17_Chr1g0154101 | 75.776 | 161 | 39 | 0 | 6 | 166 | 8 | 168 | 6.86e-80 | 262 |
| Msa0002390 | MtrunA17_Chr1g0154101 | 32.041 | 387 | 202 | 11 | 20 | 397 | 503 | 837 | 1.83e-41 | 155 |
| Msa0002390 | MtrunA17_Chr1g0154131 | 64.533 | 375 | 62 | 7 | 7 | 380 | 168 | 472 | 5.47e-160 | 458 |
| Msa0002390 | MtrunA17_Chr1g0154131 | 76.398 | 161 | 37 | 1 | 6 | 166 | 9 | 168 | 2.92e-80 | 254 |
| Msa0002390 | MtrunA17_Chr1g0154171 | 60.202 | 397 | 114 | 5 | 1 | 396 | 1 | 354 | 8.11e-157 | 446 |
| Msa0002390 | MtrunA17_Chr1g0154191 | 55.473 | 402 | 127 | 4 | 6 | 396 | 5 | 365 | 5.68e-149 | 426 |
| Msa0002390 | MtrunA17_Chr1g0154071 | 56.417 | 374 | 136 | 7 | 11 | 383 | 145 | 492 | 1.01e-134 | 395 |
| Msa0002390 | MtrunA17_Chr1g0154071 | 74.265 | 136 | 34 | 1 | 3 | 138 | 8 | 142 | 6.88e-63 | 209 |
| Msa0002390 | MtrunA17_Chr1g0154151 | 53.867 | 362 | 106 | 8 | 38 | 395 | 19 | 323 | 7.59e-120 | 351 |
| Msa0002390 | MtrunA17_Chr1g0154241 | 67.578 | 256 | 73 | 5 | 6 | 255 | 5 | 256 | 6.24e-115 | 336 |
| Msa0002390 | MtrunA17_Chr1g0154251 | 50.256 | 390 | 156 | 11 | 6 | 363 | 10 | 393 | 9.61e-112 | 337 |
| Msa0002390 | MtrunA17_Chr1g0154161 | 90.511 | 137 | 13 | 0 | 4 | 140 | 11 | 147 | 5.69e-86 | 264 |
| Msa0002390 | MtrunA17_Chr1g0154161 | 49.029 | 206 | 95 | 2 | 192 | 396 | 122 | 318 | 4.98e-55 | 184 |
| Msa0002390 | MtrunA17_Chr1g0154041 | 41.979 | 374 | 183 | 8 | 22 | 388 | 15 | 361 | 1.63e-81 | 261 |
| Msa0002390 | MtrunA17_Chr1g0154041 | 31.606 | 386 | 207 | 12 | 20 | 396 | 252 | 589 | 3.87e-39 | 147 |
| Msa0002390 | MtrunA17_Chr1g0154121 | 62.366 | 93 | 33 | 1 | 305 | 395 | 1 | 93 | 5.00e-35 | 124 |
| Msa0002390 | MtrunA17_Chr6g0464121 | 56.000 | 75 | 32 | 1 | 309 | 382 | 122 | 196 | 1.28e-21 | 94.7 |
| Msa0002390 | MtrunA17_Chr7g0233571 | 37.755 | 98 | 61 | 0 | 16 | 113 | 3 | 100 | 7.50e-16 | 76.3 |
| Msa0002390 | MtrunA17_Chr3g0131891 | 35.484 | 93 | 60 | 0 | 21 | 113 | 17 | 109 | 3.74e-15 | 75.9 |
| Msa0002390 | MtrunA17_Chr7g0233561 | 36.957 | 92 | 58 | 0 | 21 | 112 | 16 | 107 | 6.44e-15 | 75.1 |
| Msa0002390 | MtrunA17_Chr7g0233531 | 40.000 | 75 | 45 | 0 | 39 | 113 | 2 | 76 | 2.46e-13 | 70.1 |
| Msa0002390 | MtrunA17_Chr5g0419201 | 36.264 | 91 | 58 | 0 | 23 | 113 | 16 | 106 | 1.82e-12 | 65.9 |
| Msa0002390 | MtrunA17_Chr7g0233541 | 37.975 | 79 | 49 | 0 | 39 | 117 | 2 | 80 | 2.15e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0002390 | AT4G33280.3 | 33.158 | 380 | 208 | 11 | 9 | 366 | 11 | 366 | 3.65e-50 | 174 |
| Msa0002390 | AT4G33280.1 | 32.597 | 362 | 173 | 10 | 9 | 366 | 11 | 305 | 1.98e-48 | 168 |
| Msa0002390 | AT4G33280.2 | 55.385 | 130 | 55 | 2 | 9 | 137 | 11 | 138 | 7.22e-45 | 157 |
| Msa0002390 | AT3G18990.2 | 24.810 | 395 | 230 | 10 | 23 | 399 | 6 | 351 | 3.63e-22 | 97.4 |
| Msa0002390 | AT3G18990.1 | 25.000 | 380 | 216 | 8 | 23 | 379 | 6 | 339 | 4.20e-22 | 96.7 |
| Msa0002390 | AT4G34400.2 | 35.644 | 101 | 61 | 2 | 23 | 122 | 17 | 114 | 1.23e-16 | 81.6 |
| Msa0002390 | AT4G34400.1 | 35.644 | 101 | 61 | 2 | 23 | 122 | 17 | 114 | 1.23e-16 | 81.6 |
| Msa0002390 | AT3G06220.1 | 30.233 | 129 | 80 | 4 | 23 | 151 | 11 | 129 | 1.88e-14 | 71.6 |
| Msa0002390 | AT3G06160.5 | 26.512 | 215 | 133 | 7 | 23 | 236 | 11 | 201 | 1.00e-13 | 72.0 |
| Msa0002390 | AT3G06160.4 | 26.512 | 215 | 133 | 7 | 23 | 236 | 11 | 201 | 1.00e-13 | 72.0 |
| Msa0002390 | AT3G06160.3 | 26.512 | 215 | 133 | 7 | 23 | 236 | 11 | 201 | 1.00e-13 | 72.0 |
| Msa0002390 | AT3G06160.1 | 26.512 | 215 | 133 | 7 | 23 | 236 | 26 | 216 | 1.06e-13 | 72.0 |
| Msa0002390 | AT3G06160.2 | 26.512 | 215 | 133 | 7 | 23 | 236 | 70 | 260 | 1.52e-13 | 72.0 |
| Msa0002390 | AT3G53310.1 | 35.165 | 91 | 57 | 1 | 23 | 113 | 12 | 100 | 6.65e-12 | 66.2 |
| Msa0002390 | AT5G60130.5 | 38.462 | 91 | 51 | 2 | 35 | 120 | 25 | 115 | 1.41e-11 | 64.7 |
| Msa0002390 | AT5G60130.3 | 39.326 | 89 | 49 | 2 | 37 | 120 | 1 | 89 | 2.18e-11 | 64.7 |
| Msa0002390 | AT5G66980.1 | 40.244 | 82 | 45 | 1 | 35 | 112 | 21 | 102 | 2.39e-11 | 65.1 |
| Msa0002390 | AT5G60130.2 | 39.326 | 89 | 49 | 2 | 37 | 120 | 27 | 115 | 2.84e-11 | 64.3 |
| Msa0002390 | AT5G60130.4 | 39.326 | 89 | 49 | 2 | 37 | 120 | 24 | 112 | 3.12e-11 | 64.7 |
| Msa0002390 | AT5G60140.1 | 32.727 | 110 | 69 | 2 | 14 | 120 | 7 | 114 | 3.16e-11 | 64.7 |
| Msa0002390 | AT5G60130.1 | 39.326 | 89 | 49 | 2 | 37 | 120 | 27 | 115 | 3.18e-11 | 64.7 |
Find 114 sgRNAs with CRISPR-Local
Find 251 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTCCAAGCTTTATGTTAT+TGG | 0.166151 | 1_1:+4284992 | None:intergenic |
| TCTTCCTCGTGAACCGTTAA+AGG | 0.176194 | 1_1:-4288368 | Msa0002390:five_prime_UTR |
| CAGCTCCACTAGGACCTTTA+AGG | 0.180866 | 1_1:+4287398 | None:intergenic |
| CCAGAAAATGTGACCCTTAA+AGG | 0.236805 | 1_1:-4287412 | Msa0002390:CDS |
| AACTTCATTAGCTGGCTTCT+TGG | 0.255515 | 1_1:+4286919 | None:intergenic |
| CCTTTGGCCGGTTGGTTGTT+TGG | 0.258620 | 1_1:+4286943 | None:intergenic |
| GAAAGTATTGATCATCAAAA+TGG | 0.270213 | 1_1:-4284879 | Msa0002390:CDS |
| TACAAGTTGTTGTTGAAAAT+TGG | 0.275640 | 1_1:+4288164 | None:intergenic |
| TGGTTGTTTGGGAAAGTAGA+TGG | 0.276616 | 1_1:+4286955 | None:intergenic |
| CTTTGGCCGGTTGGTTGTTT+GGG | 0.281327 | 1_1:+4286944 | None:intergenic |
| TCACGAGAATTACCTTCTTT+TGG | 0.284057 | 1_1:+4286863 | None:intergenic |
| TGGTTCACCTGAGAGATTTC+GGG | 0.291973 | 1_1:-4287083 | Msa0002390:CDS |
| CTCTCTGCTTCTGTTTGAAA+TGG | 0.300695 | 1_1:-4288274 | Msa0002390:exon |
| AGTGGAGCTGTGTGGGATAT+TGG | 0.305311 | 1_1:-4287385 | Msa0002390:CDS |
| GTGGTTCACCTGAGAGATTT+CGG | 0.308902 | 1_1:-4287084 | Msa0002390:CDS |
| TGTCGATGGTCCACGTATTC+TGG | 0.310730 | 1_1:-4285744 | Msa0002390:intron |
| AAGTAGATGGGGAGTTCCTT+AGG | 0.312746 | 1_1:+4286968 | None:intergenic |
| CTTGGGAAGAAGATATTTAC+TGG | 0.326346 | 1_1:-4288233 | Msa0002390:CDS |
| TTAGTGATGATACAGCTAAT+TGG | 0.326516 | 1_1:+4284700 | None:intergenic |
| GTCTTCCTCGCTTCTTAGTC+TGG | 0.344493 | 1_1:+4286888 | None:intergenic |
| TAGCTGGCTTCTTGGTCCTT+TGG | 0.354794 | 1_1:+4286927 | None:intergenic |
| CACCTGAGAGATTTCGGGTT+CGG | 0.376625 | 1_1:-4287078 | Msa0002390:CDS |
| CTTGTATGCACTCTACTTCT+AGG | 0.379008 | 1_1:+4285053 | None:intergenic |
| GTGGAGCTGTGTGGGATATT+GGG | 0.390357 | 1_1:-4287384 | Msa0002390:CDS |
| CAAGAATGTTAGCAAGTAGA+TGG | 0.391596 | 1_1:+4284818 | None:intergenic |
| ATAATCTTTATCTTGCCGTT+TGG | 0.397078 | 1_1:+4285119 | None:intergenic |
| TAGTGATGATACAGCTAATT+GGG | 0.397772 | 1_1:+4284701 | None:intergenic |
| GTGAGGGAGCACTTGATTTG+AGG | 0.403845 | 1_1:-4286844 | Msa0002390:CDS |
| CTTCCTCGTGAACCGTTAAA+GGG | 0.406379 | 1_1:-4288367 | Msa0002390:five_prime_UTR |
| TGTTTACTTCGTGGGCGGTT+GGG | 0.420992 | 1_1:-4287341 | Msa0002390:CDS |
| TGAGGGAGCACTTGATTTGA+GGG | 0.422320 | 1_1:-4286843 | Msa0002390:CDS |
| TAGGGCTTTAAACCCTTTAA+CGG | 0.424192 | 1_1:+4288355 | None:intergenic |
| CTGTTTACTTCGTGGGCGGT+TGG | 0.428777 | 1_1:-4287342 | Msa0002390:CDS |
| TTCTTGGTCCTTTGGCCGGT+TGG | 0.434930 | 1_1:+4286935 | None:intergenic |
| CTGTTTGAAATGGAAGTAGA+TGG | 0.435371 | 1_1:-4288264 | Msa0002390:exon |
| GGTTGTTTGGGAAAGTAGAT+GGG | 0.439627 | 1_1:+4286956 | None:intergenic |
| TGGCTTCTTGGTCCTTTGGC+CGG | 0.440342 | 1_1:+4286931 | None:intergenic |
| AAGTAGATGGAAGCAGATCT+TGG | 0.447214 | 1_1:-4288251 | Msa0002390:CDS |
| CCTCGCTTCTTAGTCTGGCC+AGG | 0.449815 | 1_1:+4286893 | None:intergenic |
| AGTAGATGGGGAGTTCCTTA+GGG | 0.454636 | 1_1:+4286969 | None:intergenic |
| CCAGGTGTAACTTCATTAGC+TGG | 0.461198 | 1_1:+4286911 | None:intergenic |
| GATGCGCTATGGAAAATTGA+TGG | 0.463928 | 1_1:+4285144 | None:intergenic |
| AGCTCCACTAGGACCTTTAA+GGG | 0.472647 | 1_1:+4287399 | None:intergenic |
| CGCCGAACCCGAAATCTCTC+AGG | 0.473424 | 1_1:+4287076 | None:intergenic |
| AAAGTATTGATCATCAAAAT+GGG | 0.485102 | 1_1:-4284878 | Msa0002390:CDS |
| GAAGTCAATACTGCTTCTAA+TGG | 0.487691 | 1_1:-4287118 | Msa0002390:CDS |
| GATGGTACTGTTTACTTCGT+GGG | 0.490529 | 1_1:-4287349 | Msa0002390:CDS |
| TACTTTCCCAAACAACCAAC+CGG | 0.491088 | 1_1:-4286950 | Msa0002390:CDS |
| CAACGGTGAATCTCTCTTTG+AGG | 0.491919 | 1_1:-4287263 | Msa0002390:CDS |
| GATTATTCTTCGTAATTTGA+AGG | 0.492590 | 1_1:-4285102 | Msa0002390:CDS |
| TCCATAGCGCATCTTCCAAA+CGG | 0.492621 | 1_1:-4285134 | Msa0002390:CDS |
| CGAGGAAGACCGCCAAAAGA+AGG | 0.494591 | 1_1:-4286875 | Msa0002390:CDS |
| AAGAACACAAACACATCTGT+TGG | 0.496016 | 1_1:-4287142 | Msa0002390:CDS |
| GCTAGTCTCCGAGGTTCAAA+AGG | 0.500197 | 1_1:-4284901 | Msa0002390:CDS |
| TTGCTGAGGTCGACGAAGAC+GGG | 0.500559 | 1_1:-4284923 | Msa0002390:CDS |
| GGACATGCTCAAACTGAAGA+AGG | 0.510328 | 1_1:-4287178 | Msa0002390:CDS |
| ATTATTCTTCGTAATTTGAA+GGG | 0.513122 | 1_1:-4285101 | Msa0002390:CDS |
| GTTGCTGAGGTCGACGAAGA+CGG | 0.514090 | 1_1:-4284924 | Msa0002390:CDS |
| AGTAGATGGAAGCAGATCTT+GGG | 0.514632 | 1_1:-4288250 | Msa0002390:CDS |
| AACAAAATATGGAAAAGTTG+AGG | 0.516177 | 1_1:+4285787 | None:intergenic |
| TATTGAATCTGCTTCCCCTA+AGG | 0.518194 | 1_1:-4286984 | Msa0002390:CDS |
| GAAAAGTTGAGGTAAATGAC+TGG | 0.520804 | 1_1:+4285798 | None:intergenic |
| AACAGAAGCAGAGAGTGAAA+TGG | 0.524263 | 1_1:+4288282 | None:intergenic |
| CACCGTTGTACTTAAAGACA+AGG | 0.534444 | 1_1:+4287278 | None:intergenic |
| ATGCGCTATGGAAAATTGAT+GGG | 0.534562 | 1_1:+4285145 | None:intergenic |
| TCCGTAGGCTCGTGAACTGT+TGG | 0.536321 | 1_1:-4284584 | Msa0002390:three_prime_UTR |
| AGATGGTACTGTTTACTTCG+TGG | 0.536376 | 1_1:-4287350 | Msa0002390:CDS |
| CGTGCCAATAACATAAAGCT+TGG | 0.537860 | 1_1:-4284996 | Msa0002390:CDS |
| GACATGCTCAAACTGAAGAA+GGG | 0.539180 | 1_1:-4287177 | Msa0002390:CDS |
| GCTTCTAACAAGGAACTCTC+AGG | 0.540714 | 1_1:-4286821 | Msa0002390:intron |
| ATCAAAACATTCAATGTCGA+TGG | 0.543207 | 1_1:-4285758 | Msa0002390:CDS |
| GCCGTTTGGAAGATGCGCTA+TGG | 0.543496 | 1_1:+4285133 | None:intergenic |
| CCAGCTAATGAAGTTACACC+TGG | 0.556435 | 1_1:-4286911 | Msa0002390:CDS |
| ACAGCTAATTGGGGTGTGAA+TGG | 0.556813 | 1_1:+4284711 | None:intergenic |
| TTCCTTGTCTTTAAGTACAA+CGG | 0.557608 | 1_1:-4287280 | Msa0002390:CDS |
| TGGAGTTAGTTTCTGTGAGA+AGG | 0.558125 | 1_1:-4287227 | Msa0002390:CDS |
| CATGAATTATGATGATACAT+TGG | 0.565560 | 1_1:+4284771 | None:intergenic |
| ACCAACAGTTCACGAGCCTA+CGG | 0.567318 | 1_1:+4284583 | None:intergenic |
| AGGTCCTAGTGGAGCTGTGT+GGG | 0.568073 | 1_1:-4287392 | Msa0002390:CDS |
| TGATTTGAGGGCTTCTAACA+AGG | 0.574575 | 1_1:-4286831 | Msa0002390:CDS |
| CCAAACAACCAACCGGCCAA+AGG | 0.585015 | 1_1:-4286943 | Msa0002390:CDS |
| ATATCCCACACAGCTCCACT+AGG | 0.588180 | 1_1:+4287388 | None:intergenic |
| GTTGTTTGGGAAAGTAGATG+GGG | 0.591431 | 1_1:+4286957 | None:intergenic |
| CGGTTCACGAGGAAGATGAA+TGG | 0.593697 | 1_1:+4288375 | None:intergenic |
| GTCAATACTGCTTCTAATGG+TGG | 0.601970 | 1_1:-4287115 | Msa0002390:CDS |
| CATACAAGTCACACTTTGTG+TGG | 0.602821 | 1_1:-4285038 | Msa0002390:CDS |
| TCTAATGGTGGCGTTGACTG+TGG | 0.604326 | 1_1:-4287103 | Msa0002390:CDS |
| GTCAAGGTTATCGTCAGCAA+AGG | 0.607838 | 1_1:-4285837 | Msa0002390:CDS |
| AAGTTGTTGTTGAAAATTGG+TGG | 0.610802 | 1_1:+4288167 | None:intergenic |
| GTCACACTTTGTGTGGAGGA+TGG | 0.614641 | 1_1:-4285031 | Msa0002390:CDS |
| AGTCTGTCATAGGTCAACCT+AGG | 0.615410 | 1_1:+4288468 | None:intergenic |
| AAAAGTTGAGGTAAATGACT+GGG | 0.616205 | 1_1:+4285799 | None:intergenic |
| AAGGTCCTAGTGGAGCTGTG+TGG | 0.617527 | 1_1:-4287393 | Msa0002390:CDS |
| ATTACGTGTCCGTGTTGCTG+AGG | 0.620142 | 1_1:-4284937 | Msa0002390:CDS |
| ACATGCTCAAACTGAAGAAG+GGG | 0.624407 | 1_1:-4287176 | Msa0002390:CDS |
| AAAAGAAGGTAATTCTCGTG+AGG | 0.624894 | 1_1:-4286861 | Msa0002390:CDS |
| GTGACCCTTAAAGGTCCTAG+TGG | 0.630968 | 1_1:-4287403 | Msa0002390:CDS |
| GAACAACTCACCAGAATACG+TGG | 0.631909 | 1_1:+4285734 | None:intergenic |
| AAAGAAGGTAATTCTCGTGA+GGG | 0.632567 | 1_1:-4286860 | Msa0002390:CDS |
| TTCACGAGGAAGATGAATGG+TGG | 0.634155 | 1_1:+4288378 | None:intergenic |
| CCACAGAGGCAGCACAGTCA+AGG | 0.637815 | 1_1:-4285853 | Msa0002390:intron |
| ATTGGGTTGACAACTAGAGA+TGG | 0.647577 | 1_1:-4287367 | Msa0002390:CDS |
| GTAATTTGAAGGGAGAACAG+TGG | 0.655181 | 1_1:-4285091 | Msa0002390:CDS |
| AAACCCTTTAACGGTTCACG+AGG | 0.657561 | 1_1:+4288364 | None:intergenic |
| AGTGATGATACAGCTAATTG+GGG | 0.658407 | 1_1:+4284702 | None:intergenic |
| GGTACTGTTTACTTCGTGGG+CGG | 0.659429 | 1_1:-4287346 | Msa0002390:CDS |
| TTGTCTATATAACATTCCGT+AGG | 0.662376 | 1_1:-4284599 | Msa0002390:three_prime_UTR |
| CTTCGTCGACCTCAGCAACA+CGG | 0.662749 | 1_1:+4284928 | None:intergenic |
| CGAAGACGGGCTAGTCTCCG+AGG | 0.666474 | 1_1:-4284910 | Msa0002390:CDS |
| TGCGCTATGGAAAATTGATG+GGG | 0.667850 | 1_1:+4285146 | None:intergenic |
| ACAAGTCACACTTTGTGTGG+AGG | 0.672770 | 1_1:-4285035 | Msa0002390:CDS |
| GTAGATGGGGAGTTCCTTAG+GGG | 0.675019 | 1_1:+4286970 | None:intergenic |
| CATGCTCAAACTGAAGAAGG+GGG | 0.720080 | 1_1:-4287175 | Msa0002390:CDS |
| CCTGGCCAGACTAAGAAGCG+AGG | 0.722966 | 1_1:-4286893 | Msa0002390:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAATGTAGTAAAATTTAA+TGG | + | chr1_1:4286277-4286296 | None:intergenic | 10.0% |
| !!! | TTGATTATTTTAACAAAATA+TGG | + | chr1_1:4287279-4287298 | None:intergenic | 10.0% |
| !! | ACAAAAATTAAACCTTTATA+AGG | - | chr1_1:4284956-4284975 | Msa0002390:CDS | 15.0% |
| !! | AGATACAAAATTTAAAAGAT+GGG | + | chr1_1:4285024-4285043 | None:intergenic | 15.0% |
| !! | AAGATACAAAATTTAAAAGA+TGG | + | chr1_1:4285025-4285044 | None:intergenic | 15.0% |
| !! | TATACTATATGTTCAAAATA+TGG | + | chr1_1:4285137-4285156 | None:intergenic | 15.0% |
| !!! | ATTAATTATGTTTAGCTTTT+AGG | - | chr1_1:4285289-4285308 | Msa0002390:intron | 15.0% |
| !!! | ACTTTTCAAAAACAAAATTA+AGG | - | chr1_1:4285364-4285383 | Msa0002390:intron | 15.0% |
| !!! | CTTTTCAAAAACAAAATTAA+GGG | - | chr1_1:4285365-4285384 | Msa0002390:intron | 15.0% |
| !!! | TTTTCAAAAACAAAATTAAG+GGG | - | chr1_1:4285366-4285385 | Msa0002390:intron | 15.0% |
| !! | GAAGTTTATATATAATGTAT+TGG | - | chr1_1:4286674-4286693 | Msa0002390:intron | 15.0% |
| !!! | AATCATGAGTTTAAAATAAA+AGG | + | chr1_1:4287166-4287185 | None:intergenic | 15.0% |
| !! | AAAAAACTAACAATTACAAT+TGG | + | chr1_1:4287747-4287766 | None:intergenic | 15.0% |
| !!! | TTTTAAGAAATTGAGTGAAA+TGG | + | chr1_1:4284862-4284881 | None:intergenic | 20.0% |
| !! | AAAAAGAGAAAAAGAATGAA+GGG | + | chr1_1:4284920-4284939 | None:intergenic | 20.0% |
| !! | TAAAAAGAGAAAAAGAATGA+AGG | + | chr1_1:4284921-4284940 | None:intergenic | 20.0% |
| !!! | TTAATTTTTGTTAACATGGA+AGG | + | chr1_1:4284947-4284966 | None:intergenic | 20.0% |
| !!! | AGGTTTAATTTTTGTTAACA+TGG | + | chr1_1:4284951-4284970 | None:intergenic | 20.0% |
| !!! | TTTATAAGGTTTTCATACTT+GGG | - | chr1_1:4284970-4284989 | Msa0002390:CDS | 20.0% |
| !!! | ATATGCTTGTTTTTACATAA+TGG | - | chr1_1:4285164-4285183 | Msa0002390:intron | 20.0% |
| !! | TTTCAAAAACAAAATTAAGG+GGG | - | chr1_1:4285367-4285386 | Msa0002390:intron | 20.0% |
| !! | TCAAGCAAATTATTATCTTT+AGG | - | chr1_1:4285520-4285539 | Msa0002390:intron | 20.0% |
| !!! | AAATTGTCTGAAAATGTTTT+AGG | + | chr1_1:4285607-4285626 | None:intergenic | 20.0% |
| !!! | TCTTATTTTGTTAGAAAATG+TGG | - | chr1_1:4285853-4285872 | Msa0002390:intron | 20.0% |
| !! | ACAAATTTGACAAAAAAAAC+TGG | + | chr1_1:4286596-4286615 | None:intergenic | 20.0% |
| !! | TAAAATAAAAGGATAATCTC+TGG | + | chr1_1:4287155-4287174 | None:intergenic | 20.0% |
| !! | GTAAATTAAGAATCACAAAA+GGG | + | chr1_1:4287343-4287362 | None:intergenic | 20.0% |
| !! | GAGATAAAACAACATTATTT+GGG | + | chr1_1:4287368-4287387 | None:intergenic | 20.0% |
| !! | AGAGATAAAACAACATTATT+TGG | + | chr1_1:4287369-4287388 | None:intergenic | 20.0% |
| !!! | ACAGGAAATATTAACTTTTA+AGG | + | chr1_1:4287771-4287790 | None:intergenic | 20.0% |
| !! | ATTTCCTGTATTAAGTTTAT+TGG | - | chr1_1:4287782-4287801 | Msa0002390:intron | 20.0% |
| !! | ATTATTCTTCGTAATTTGAA+GGG | - | chr1_1:4287951-4287970 | Msa0002390:intron | 20.0% |
| !!! | AAAGTATTGATCATCAAAAT+GGG | - | chr1_1:4288174-4288193 | Msa0002390:CDS | 20.0% |
| !!! | ATTCTTAGTATATGTTTTAG+AGG | - | chr1_1:4288315-4288334 | Msa0002390:five_prime_UTR | 20.0% |
| !! | TACAAGTTGTTGTTGAAAAT+TGG | + | chr1_1:4284891-4284910 | None:intergenic | 25.0% |
| ! | CAAGTATGAAAACCTTATAA+AGG | + | chr1_1:4284971-4284990 | None:intergenic | 25.0% |
| !! | CTTTATAAGGTTTTCATACT+TGG | - | chr1_1:4284969-4284988 | Msa0002390:CDS | 25.0% |
| !!! | AGTTTTCAGCTTTTGATTAT+TGG | - | chr1_1:4285084-4285103 | Msa0002390:CDS | 25.0% |
| !!! | TTGTTTTTACATAATGGCTT+AGG | - | chr1_1:4285170-4285189 | Msa0002390:intron | 25.0% |
| !!! | GGAAATTATATTTTAACTGC+AGG | - | chr1_1:4285576-4285595 | Msa0002390:intron | 25.0% |
| !!! | TTTGAGGTTTTAATCTTTGA+TGG | - | chr1_1:4285805-4285824 | Msa0002390:CDS | 25.0% |
| !!! | ATTTTATCAGTAGTTTTGAC+AGG | + | chr1_1:4286033-4286052 | None:intergenic | 25.0% |
| ! | GTTATAGATACTAAATAAGC+TGG | + | chr1_1:4286301-4286320 | None:intergenic | 25.0% |
| !! | GTTTAGTATCGAATTAAGAT+AGG | + | chr1_1:4286447-4286466 | None:intergenic | 25.0% |
| ! | ACATCTAGTATGTATCTATT+TGG | - | chr1_1:4286485-4286504 | Msa0002390:intron | 25.0% |
| ! | AAAATTCATCATAGTGAATC+AGG | + | chr1_1:4286531-4286550 | None:intergenic | 25.0% |
| ! | ATTTGACAAAAAAAACTGGT+TGG | + | chr1_1:4286592-4286611 | None:intergenic | 25.0% |
| ! | TCAAATGACAAAAAGAAAAG+TGG | + | chr1_1:4286627-4286646 | None:intergenic | 25.0% |
| ! | AAAATGACATACTTTCTGAT+AGG | - | chr1_1:4286731-4286750 | Msa0002390:intron | 25.0% |
| ! | AACAAAATATGGAAAAGTTG+AGG | + | chr1_1:4287268-4287287 | None:intergenic | 25.0% |
| ! | GGTAAATTAAGAATCACAAA+AGG | + | chr1_1:4287344-4287363 | None:intergenic | 25.0% |
| ! | ATAAAACAACATTATTTGGG+AGG | + | chr1_1:4287365-4287384 | None:intergenic | 25.0% |
| ! | AAGTTACTTAAAGATAGAGA+CGG | + | chr1_1:4287392-4287411 | None:intergenic | 25.0% |
| ! | GATTATTCTTCGTAATTTGA+AGG | - | chr1_1:4287950-4287969 | Msa0002390:intron | 25.0% |
| !!! | GAAAGTATTGATCATCAAAA+TGG | - | chr1_1:4288173-4288192 | Msa0002390:CDS | 25.0% |
| ! | CATGAATTATGATGATACAT+TGG | + | chr1_1:4288284-4288303 | None:intergenic | 25.0% |
| !! | CATTCATTTTAGTCTGTCAT+AGG | + | chr1_1:4284597-4284616 | None:intergenic | 30.0% |
| ! | AAAAAGGAAAGAAGGGTATA+GGG | + | chr1_1:4284718-4284737 | None:intergenic | 30.0% |
| !!! | TTTTGGTTTGAGGAAGAAAA+AGG | + | chr1_1:4284734-4284753 | None:intergenic | 30.0% |
| ! | AAGTTGTTGTTGAAAATTGG+TGG | + | chr1_1:4284888-4284907 | None:intergenic | 30.0% |
| ATAGAACTAACTGCAGTTAA+AGG | + | chr1_1:4285057-4285076 | None:intergenic | 30.0% | |
| !! | TAAGGGGGAAATTTTGATAT+TGG | - | chr1_1:4285382-4285401 | Msa0002390:intron | 30.0% |
| ! | ACGTATCTTTTAATCTCAGA+TGG | - | chr1_1:4285555-4285574 | Msa0002390:intron | 30.0% |
| TTCCTTGTCTTTAAGTACAA+CGG | - | chr1_1:4285772-4285791 | Msa0002390:CDS | 30.0% | |
| TCTATAACTTTCTGATGTCA+TGG | - | chr1_1:4286313-4286332 | Msa0002390:intron | 30.0% | |
| TCCTGTGTATCTATAAAAAG+GGG | + | chr1_1:4286422-4286441 | None:intergenic | 30.0% | |
| CTCCTGTGTATCTATAAAAA+GGG | + | chr1_1:4286423-4286442 | None:intergenic | 30.0% | |
| ACTCCTGTGTATCTATAAAA+AGG | + | chr1_1:4286424-4286443 | None:intergenic | 30.0% | |
| TATGTCATCTGCTAAAGTTA+AGG | + | chr1_1:4286758-4286777 | None:intergenic | 30.0% | |
| TTAACTTTAGCAGATGACAT+AGG | - | chr1_1:4286757-4286776 | Msa0002390:intron | 30.0% | |
| ACATAAACTGCCTACAATTT+GGG | + | chr1_1:4286805-4286824 | None:intergenic | 30.0% | |
| !! | GGAAGAATCATTGTTTTGTT+TGG | - | chr1_1:4286926-4286945 | Msa0002390:CDS | 30.0% |
| AAAAGTTGAGGTAAATGACT+GGG | + | chr1_1:4287256-4287275 | None:intergenic | 30.0% | |
| ATCAAAACATTCAATGTCGA+TGG | - | chr1_1:4287294-4287313 | Msa0002390:CDS | 30.0% | |
| ! | AGCATTTCTCCTTTTATGTA+TGG | - | chr1_1:4287455-4287474 | Msa0002390:CDS | 30.0% |
| ! | ATTTCTCCTTTTATGTATGG+AGG | - | chr1_1:4287458-4287477 | Msa0002390:intron | 30.0% |
| ! | TCATTGAAATCGTCTTTTAC+TGG | + | chr1_1:4287524-4287543 | None:intergenic | 30.0% |
| ! | GATTGACTCATAAATTAGGA+TGG | + | chr1_1:4287564-4287583 | None:intergenic | 30.0% |
| ! | CCAAGATTGACTCATAAATT+AGG | + | chr1_1:4287568-4287587 | None:intergenic | 30.0% |
| CCTAATTTATGAGTCAATCT+TGG | - | chr1_1:4287565-4287584 | Msa0002390:intron | 30.0% | |
| CAATTACAATTGGTACTTCT+TGG | + | chr1_1:4287737-4287756 | None:intergenic | 30.0% | |
| ACGACCAATAAACTTAATAC+AGG | + | chr1_1:4287789-4287808 | None:intergenic | 30.0% | |
| ATAATCTTTATCTTGCCGTT+TGG | + | chr1_1:4287936-4287955 | None:intergenic | 30.0% | |
| ! | ATCTCCAAGCTTTATGTTAT+TGG | + | chr1_1:4288063-4288082 | None:intergenic | 30.0% |
| ! | AATACTTTCCTTTTGAACCT+CGG | + | chr1_1:4288162-4288181 | None:intergenic | 30.0% |
| TAGTGATGATACAGCTAATT+GGG | + | chr1_1:4288354-4288373 | None:intergenic | 30.0% | |
| TTAGTGATGATACAGCTAAT+TGG | + | chr1_1:4288355-4288374 | None:intergenic | 30.0% | |
| TTGTCTATATAACATTCCGT+AGG | - | chr1_1:4288453-4288472 | Msa0002390:five_prime_UTR | 30.0% | |
| !! | TAGGGCTTTAAACCCTTTAA+CGG | + | chr1_1:4284700-4284719 | None:intergenic | 35.0% |
| ! | GAAAAAGGAAAGAAGGGTAT+AGG | + | chr1_1:4284719-4284738 | None:intergenic | 35.0% |
| GAGGAAGAAAAAGGAAAGAA+GGG | + | chr1_1:4284725-4284744 | None:intergenic | 35.0% | |
| TGAGGAAGAAAAAGGAAAGA+AGG | + | chr1_1:4284726-4284745 | None:intergenic | 35.0% | |
| ! | GTTCAAAGTTGCAAGCTTTT+TGG | + | chr1_1:4284751-4284770 | None:intergenic | 35.0% |
| ! | CTGTTTGAAATGGAAGTAGA+TGG | - | chr1_1:4284788-4284807 | Msa0002390:three_prime_UTR | 35.0% |
| CTTGGGAAGAAGATATTTAC+TGG | - | chr1_1:4284819-4284838 | Msa0002390:three_prime_UTR | 35.0% | |
| TTTATTATTCCTTTCCTGCC+TGG | - | chr1_1:4285312-4285331 | Msa0002390:intron | 35.0% | |
| GATTTGAACCTTGAAGATTG+AGG | - | chr1_1:4285427-4285446 | Msa0002390:intron | 35.0% | |
| TGTTGTAACCTCAATCTTCA+AGG | + | chr1_1:4285438-4285457 | None:intergenic | 35.0% | |
| ACATGATTCACATACACTTG+AGG | + | chr1_1:4285472-4285491 | None:intergenic | 35.0% | |
| AAGAACACAAACACATCTGT+TGG | - | chr1_1:4285910-4285929 | Msa0002390:intron | 35.0% | |
| GAAGTCAATACTGCTTCTAA+TGG | - | chr1_1:4285934-4285953 | Msa0002390:intron | 35.0% | |
| ! | TCACGAGAATTACCTTCTTT+TGG | + | chr1_1:4286192-4286211 | None:intergenic | 35.0% |
| AAAAGAAGGTAATTCTCGTG+AGG | - | chr1_1:4286191-4286210 | Msa0002390:intron | 35.0% | |
| AAAGAAGGTAATTCTCGTGA+GGG | - | chr1_1:4286192-4286211 | Msa0002390:intron | 35.0% | |
| ! | ACTAGTTTGTGCAATGAACA+TGG | + | chr1_1:4286394-4286413 | None:intergenic | 35.0% |
| ! | TCCCCTTTTTATAGATACAC+AGG | - | chr1_1:4286418-4286437 | Msa0002390:intron | 35.0% |
| ACTAGATGTTCGCATCAATT+GGG | + | chr1_1:4286474-4286493 | None:intergenic | 35.0% | |
| TACTAGATGTTCGCATCAAT+TGG | + | chr1_1:4286475-4286494 | None:intergenic | 35.0% | |
| CACATAAACTGCCTACAATT+TGG | + | chr1_1:4286806-4286825 | None:intergenic | 35.0% | |
| AATTGTAGGCAGTTTATGTG+AGG | - | chr1_1:4286806-4286825 | Msa0002390:intron | 35.0% | |
| AGTGAAAAGACACTATTCTC+TGG | + | chr1_1:4286952-4286971 | None:intergenic | 35.0% | |
| CGAGAAATTAAAGAGAAACC+GGG | + | chr1_1:4287043-4287062 | None:intergenic | 35.0% | |
| GCGAGAAATTAAAGAGAAAC+CGG | + | chr1_1:4287044-4287063 | None:intergenic | 35.0% | |
| TGAATTGTTCAATTCCACAG+AGG | - | chr1_1:4287185-4287204 | Msa0002390:CDS | 35.0% | |
| GAAAAGTTGAGGTAAATGAC+TGG | + | chr1_1:4287257-4287276 | None:intergenic | 35.0% | |
| TACCATCCTCCATACATAAA+AGG | + | chr1_1:4287467-4287486 | None:intergenic | 35.0% | |
| AGTAGTTGAGAAGTTTGTCA+AGG | + | chr1_1:4287664-4287683 | None:intergenic | 35.0% | |
| TAATGCCAAGCACATTGAAT+GGG | + | chr1_1:4287834-4287853 | None:intergenic | 35.0% | |
| TTAATGCCAAGCACATTGAA+TGG | + | chr1_1:4287835-4287854 | None:intergenic | 35.0% | |
| ATGCGCTATGGAAAATTGAT+GGG | + | chr1_1:4287910-4287929 | None:intergenic | 35.0% | |
| CAAGAATGTTAGCAAGTAGA+TGG | + | chr1_1:4288237-4288256 | None:intergenic | 35.0% | |
| AGTGATGATACAGCTAATTG+GGG | + | chr1_1:4288353-4288372 | None:intergenic | 35.0% | |
| !!! | GTTGCAAGCTTTTTGGTTTG+AGG | + | chr1_1:4284744-4284763 | None:intergenic | 40.0% |
| AACAGAAGCAGAGAGTGAAA+TGG | + | chr1_1:4284773-4284792 | None:intergenic | 40.0% | |
| CTCTCTGCTTCTGTTTGAAA+TGG | - | chr1_1:4284778-4284797 | Msa0002390:three_prime_UTR | 40.0% | |
| AAGTAGATGGAAGCAGATCT+TGG | - | chr1_1:4284801-4284820 | Msa0002390:three_prime_UTR | 40.0% | |
| AGTAGATGGAAGCAGATCTT+GGG | - | chr1_1:4284802-4284821 | Msa0002390:three_prime_UTR | 40.0% | |
| TAGATAGTGTTTGCAGAACC+AGG | + | chr1_1:4285333-4285352 | None:intergenic | 40.0% | |
| !! | CCTTTAAGGGTCACATTTTC+TGG | + | chr1_1:4285643-4285662 | None:intergenic | 40.0% |
| CCAGAAAATGTGACCCTTAA+AGG | - | chr1_1:4285640-4285659 | Msa0002390:intron | 40.0% | |
| !! | ATTGGGTTGACAACTAGAGA+TGG | - | chr1_1:4285685-4285704 | Msa0002390:intron | 40.0% |
| AGATGGTACTGTTTACTTCG+TGG | - | chr1_1:4285702-4285721 | Msa0002390:intron | 40.0% | |
| GATGGTACTGTTTACTTCGT+GGG | - | chr1_1:4285703-4285722 | Msa0002390:intron | 40.0% | |
| CACCGTTGTACTTAAAGACA+AGG | + | chr1_1:4285777-4285796 | None:intergenic | 40.0% | |
| ! | TGGAGTTAGTTTCTGTGAGA+AGG | - | chr1_1:4285825-4285844 | Msa0002390:CDS | 40.0% |
| GACATGCTCAAACTGAAGAA+GGG | - | chr1_1:4285875-4285894 | Msa0002390:intron | 40.0% | |
| ACATGCTCAAACTGAAGAAG+GGG | - | chr1_1:4285876-4285895 | Msa0002390:intron | 40.0% | |
| GTCAATACTGCTTCTAATGG+TGG | - | chr1_1:4285937-4285956 | Msa0002390:intron | 40.0% | |
| !! | GTTTTGACAGGTACAGCTAA+TGG | + | chr1_1:4286021-4286040 | None:intergenic | 40.0% |
| TATTGAATCTGCTTCCCCTA+AGG | - | chr1_1:4286068-4286087 | Msa0002390:intron | 40.0% | |
| GTTGTTTGGGAAAGTAGATG+GGG | + | chr1_1:4286098-4286117 | None:intergenic | 40.0% | |
| GGTTGTTTGGGAAAGTAGAT+GGG | + | chr1_1:4286099-4286118 | None:intergenic | 40.0% | |
| TGGTTGTTTGGGAAAGTAGA+TGG | + | chr1_1:4286100-4286119 | None:intergenic | 40.0% | |
| TACTTTCCCAAACAACCAAC+CGG | - | chr1_1:4286102-4286121 | Msa0002390:intron | 40.0% | |
| ! | AACTTCATTAGCTGGCTTCT+TGG | + | chr1_1:4286136-4286155 | None:intergenic | 40.0% |
| ! | CGAGAATTACCTTCTTTTGG+CGG | + | chr1_1:4286189-4286208 | None:intergenic | 40.0% |
| TGATTTGAGGGCTTCTAACA+AGG | - | chr1_1:4286221-4286240 | Msa0002390:intron | 40.0% | |
| AGGGAATAAGCCCAAATTGT+AGG | - | chr1_1:4286792-4286811 | Msa0002390:intron | 40.0% | |
| AGAAACAGTAACAGAGAGGA+GGG | - | chr1_1:4286829-4286848 | Msa0002390:CDS | 40.0% | |
| !! | GAGAATTAGTGGATTGCTTG+AGG | - | chr1_1:4286857-4286876 | Msa0002390:CDS | 40.0% |
| !! | TAGTGGATTGCTTGAGGATT+CGG | - | chr1_1:4286863-4286882 | Msa0002390:CDS | 40.0% |
| ! | CTTGAGGATTCGGTTATATG+AGG | - | chr1_1:4286873-4286892 | Msa0002390:CDS | 40.0% |
| ! | AGGATTCGGTTATATGAGGT+GGG | - | chr1_1:4286877-4286896 | Msa0002390:CDS | 40.0% |
| !! | TGTGTAGAGCATTGCTCTTT+GGG | - | chr1_1:4286971-4286990 | Msa0002390:CDS | 40.0% |
| TAGCAATCTGACACTTGTCA+AGG | - | chr1_1:4287094-4287113 | Msa0002390:CDS | 40.0% | |
| ! | CTCCTTTTATGTATGGAGGA+TGG | - | chr1_1:4287462-4287481 | Msa0002390:intron | 40.0% |
| TTCATCCCATTCAATGTGCT+TGG | - | chr1_1:4287826-4287845 | Msa0002390:intron | 40.0% | |
| TGCGCTATGGAAAATTGATG+GGG | + | chr1_1:4287909-4287928 | None:intergenic | 40.0% | |
| GATGCGCTATGGAAAATTGA+TGG | + | chr1_1:4287911-4287930 | None:intergenic | 40.0% | |
| GTAATTTGAAGGGAGAACAG+TGG | - | chr1_1:4287961-4287980 | Msa0002390:intron | 40.0% | |
| CTTGTATGCACTCTACTTCT+AGG | + | chr1_1:4288002-4288021 | None:intergenic | 40.0% | |
| CATACAAGTCACACTTTGTG+TGG | - | chr1_1:4288014-4288033 | Msa0002390:intron | 40.0% | |
| CGTGCCAATAACATAAAGCT+TGG | - | chr1_1:4288056-4288075 | Msa0002390:intron | 40.0% | |
| AGTCTGTCATAGGTCAACCT+AGG | + | chr1_1:4284587-4284606 | None:intergenic | 45.0% | |
| TTCACGAGGAAGATGAATGG+TGG | + | chr1_1:4284677-4284696 | None:intergenic | 45.0% | |
| TCTTCCTCGTGAACCGTTAA+AGG | - | chr1_1:4284684-4284703 | Msa0002390:three_prime_UTR | 45.0% | |
| CTTCCTCGTGAACCGTTAAA+GGG | - | chr1_1:4284685-4284704 | Msa0002390:three_prime_UTR | 45.0% | |
| AAACCCTTTAACGGTTCACG+AGG | + | chr1_1:4284691-4284710 | None:intergenic | 45.0% | |
| TTCAAGGTTCAAATCCCCTC+GGG | + | chr1_1:4285422-4285441 | None:intergenic | 45.0% | |
| CTTCAAGGTTCAAATCCCCT+CGG | + | chr1_1:4285423-4285442 | None:intergenic | 45.0% | |
| AGCTCCACTAGGACCTTTAA+GGG | + | chr1_1:4285656-4285675 | None:intergenic | 45.0% | |
| CAACGGTGAATCTCTCTTTG+AGG | - | chr1_1:4285789-4285808 | Msa0002390:CDS | 45.0% | |
| GGACATGCTCAAACTGAAGA+AGG | - | chr1_1:4285874-4285893 | Msa0002390:intron | 45.0% | |
| CATGCTCAAACTGAAGAAGG+GGG | - | chr1_1:4285877-4285896 | Msa0002390:intron | 45.0% | |
| GTGGTTCACCTGAGAGATTT+CGG | - | chr1_1:4285968-4285987 | Msa0002390:intron | 45.0% | |
| TGGTTCACCTGAGAGATTTC+GGG | - | chr1_1:4285969-4285988 | Msa0002390:intron | 45.0% | |
| AGTAGATGGGGAGTTCCTTA+GGG | + | chr1_1:4286086-4286105 | None:intergenic | 45.0% | |
| AAGTAGATGGGGAGTTCCTT+AGG | + | chr1_1:4286087-4286106 | None:intergenic | 45.0% | |
| CCAGGTGTAACTTCATTAGC+TGG | + | chr1_1:4286144-4286163 | None:intergenic | 45.0% | |
| CCAGCTAATGAAGTTACACC+TGG | - | chr1_1:4286141-4286160 | Msa0002390:intron | 45.0% | |
| !! | TGAGGGAGCACTTGATTTGA+GGG | - | chr1_1:4286209-4286228 | Msa0002390:intron | 45.0% |
| GCTTCTAACAAGGAACTCTC+AGG | - | chr1_1:4286231-4286250 | Msa0002390:intron | 45.0% | |
| ! | TGGTTGGCTACTCTGAGTTT+AGG | + | chr1_1:4286576-4286595 | None:intergenic | 45.0% |
| ACATAGGCCTGAGTGACAAA+GGG | - | chr1_1:4286773-4286792 | Msa0002390:intron | 45.0% | |
| GCTTATTCCCTTTGTCACTC+AGG | + | chr1_1:4286783-4286802 | None:intergenic | 45.0% | |
| GAGGAGAAACAGTAACAGAG+AGG | - | chr1_1:4286825-4286844 | Msa0002390:CDS | 45.0% | |
| GAGAAACAGTAACAGAGAGG+AGG | - | chr1_1:4286828-4286847 | Msa0002390:CDS | 45.0% | |
| GGAGGGAAAGTGAGAATTAG+TGG | - | chr1_1:4286846-4286865 | Msa0002390:CDS | 45.0% | |
| ! | GAGGATTCGGTTATATGAGG+TGG | - | chr1_1:4286876-4286895 | Msa0002390:CDS | 45.0% |
| GTTATATGAGGTGGGAGTTG+TGG | - | chr1_1:4286885-4286904 | Msa0002390:CDS | 45.0% | |
| !! | CTGTGTAGAGCATTGCTCTT+TGG | - | chr1_1:4286970-4286989 | Msa0002390:CDS | 45.0% |
| GAGAAACCGGGAATTGCAAA+TGG | + | chr1_1:4287031-4287050 | None:intergenic | 45.0% | |
| GTCAAGGTTATCGTCAGCAA+AGG | - | chr1_1:4287215-4287234 | Msa0002390:CDS | 45.0% | |
| GAACAACTCACCAGAATACG+TGG | + | chr1_1:4287321-4287340 | None:intergenic | 45.0% | |
| TGTATGGAGGATGGTAAGCA+TGG | - | chr1_1:4287471-4287490 | Msa0002390:intron | 45.0% | |
| TCCATAGCGCATCTTCCAAA+CGG | - | chr1_1:4287918-4287937 | Msa0002390:intron | 45.0% | |
| ACAAGTCACACTTTGTGTGG+AGG | - | chr1_1:4288017-4288036 | Msa0002390:intron | 45.0% | |
| ACAGCTAATTGGGGTGTGAA+TGG | + | chr1_1:4288344-4288363 | None:intergenic | 45.0% | |
| CGGTTCACGAGGAAGATGAA+TGG | + | chr1_1:4284680-4284699 | None:intergenic | 50.0% | |
| TTTGCAGAACCAGGCAGGAA+AGG | + | chr1_1:4285324-4285343 | None:intergenic | 50.0% | |
| TAGTGTTTGCAGAACCAGGC+AGG | + | chr1_1:4285329-4285348 | None:intergenic | 50.0% | |
| GTGACCCTTAAAGGTCCTAG+TGG | - | chr1_1:4285649-4285668 | Msa0002390:intron | 50.0% | |
| CAGCTCCACTAGGACCTTTA+AGG | + | chr1_1:4285657-4285676 | None:intergenic | 50.0% | |
| ATATCCCACACAGCTCCACT+AGG | + | chr1_1:4285667-4285686 | None:intergenic | 50.0% | |
| AGTGGAGCTGTGTGGGATAT+TGG | - | chr1_1:4285667-4285686 | Msa0002390:intron | 50.0% | |
| GTGGAGCTGTGTGGGATATT+GGG | - | chr1_1:4285668-4285687 | Msa0002390:intron | 50.0% | |
| GGTACTGTTTACTTCGTGGG+CGG | - | chr1_1:4285706-4285725 | Msa0002390:intron | 50.0% | |
| TGTTTACTTCGTGGGCGGTT+GGG | - | chr1_1:4285711-4285730 | Msa0002390:intron | 50.0% | |
| AACTGAAGAAGGGGGTAGCA+AGG | - | chr1_1:4285885-4285904 | Msa0002390:intron | 50.0% | |
| !! | TCTAATGGTGGCGTTGACTG+TGG | - | chr1_1:4285949-4285968 | Msa0002390:intron | 50.0% |
| !! | CACCTGAGAGATTTCGGGTT+CGG | - | chr1_1:4285974-4285993 | Msa0002390:intron | 50.0% |
| GTAGATGGGGAGTTCCTTAG+GGG | + | chr1_1:4286085-4286104 | None:intergenic | 50.0% | |
| ! | CTTTGGCCGGTTGGTTGTTT+GGG | + | chr1_1:4286111-4286130 | None:intergenic | 50.0% |
| ! | TAGCTGGCTTCTTGGTCCTT+TGG | + | chr1_1:4286128-4286147 | None:intergenic | 50.0% |
| GTCTTCCTCGCTTCTTAGTC+TGG | + | chr1_1:4286167-4286186 | None:intergenic | 50.0% | |
| !! | GTGAGGGAGCACTTGATTTG+AGG | - | chr1_1:4286208-4286227 | Msa0002390:intron | 50.0% |
| GACATAGGCCTGAGTGACAA+AGG | - | chr1_1:4286772-4286791 | Msa0002390:intron | 50.0% | |
| AGCATTGCTCTTTGGGCTGT+AGG | - | chr1_1:4286978-4286997 | Msa0002390:CDS | 50.0% | |
| GCATTGCTCTTTGGGCTGTA+GGG | - | chr1_1:4286979-4286998 | Msa0002390:CDS | 50.0% | |
| CGCGTTCCATTTGCAATTCC+CGG | - | chr1_1:4287022-4287041 | Msa0002390:CDS | 50.0% | |
| TGTCGATGGTCCACGTATTC+TGG | - | chr1_1:4287308-4287327 | Msa0002390:CDS | 50.0% | |
| GTCACACTTTGTGTGGAGGA+TGG | - | chr1_1:4288021-4288040 | Msa0002390:intron | 50.0% | |
| ! | ATTACGTGTCCGTGTTGCTG+AGG | - | chr1_1:4288115-4288134 | Msa0002390:intron | 50.0% |
| ! | GCTAGTCTCCGAGGTTCAAA+AGG | - | chr1_1:4288151-4288170 | Msa0002390:intron | 50.0% |
| !! | GCCATTTTCAACCGTCCCGA+GGG | - | chr1_1:4285404-4285423 | Msa0002390:intron | 55.0% |
| ! | CCATTTTCAACCGTCCCGAG+GGG | - | chr1_1:4285405-4285424 | Msa0002390:intron | 55.0% |
| AGGTTCAAATCCCCTCGGGA+CGG | + | chr1_1:4285418-4285437 | None:intergenic | 55.0% | |
| AAGGTCCTAGTGGAGCTGTG+TGG | - | chr1_1:4285659-4285678 | Msa0002390:intron | 55.0% | |
| AGGTCCTAGTGGAGCTGTGT+GGG | - | chr1_1:4285660-4285679 | Msa0002390:intron | 55.0% | |
| CTGTTTACTTCGTGGGCGGT+TGG | - | chr1_1:4285710-4285729 | Msa0002390:intron | 55.0% | |
| ! | CCTTTGGCCGGTTGGTTGTT+TGG | + | chr1_1:4286112-4286131 | None:intergenic | 55.0% |
| CCAAACAACCAACCGGCCAA+AGG | - | chr1_1:4286109-4286128 | Msa0002390:intron | 55.0% | |
| TTCTTGGTCCTTTGGCCGGT+TGG | + | chr1_1:4286120-4286139 | None:intergenic | 55.0% | |
| TGGCTTCTTGGTCCTTTGGC+CGG | + | chr1_1:4286124-4286143 | None:intergenic | 55.0% | |
| CGAGGAAGACCGCCAAAAGA+AGG | - | chr1_1:4286177-4286196 | Msa0002390:intron | 55.0% | |
| ATGAGGTGGGAGTTGTGGAG+AGG | - | chr1_1:4286890-4286909 | Msa0002390:CDS | 55.0% | |
| TGGGAGTTGTGGAGAGGAAG+AGG | - | chr1_1:4286896-4286915 | Msa0002390:CDS | 55.0% | |
| GGGAGTTGTGGAGAGGAAGA+GGG | - | chr1_1:4286897-4286916 | Msa0002390:CDS | 55.0% | |
| GCCGTTTGGAAGATGCGCTA+TGG | + | chr1_1:4287922-4287941 | None:intergenic | 55.0% | |
| CTTCGTCGACCTCAGCAACA+CGG | + | chr1_1:4288127-4288146 | None:intergenic | 55.0% | |
| GTTGCTGAGGTCGACGAAGA+CGG | - | chr1_1:4288128-4288147 | Msa0002390:intron | 55.0% | |
| TTGCTGAGGTCGACGAAGAC+GGG | - | chr1_1:4288129-4288148 | Msa0002390:intron | 55.0% | |
| !! | GGCCATTTTCAACCGTCCCG+AGG | - | chr1_1:4285403-4285422 | Msa0002390:intron | 60.0% |
| CCCCTCGGGACGGTTGAAAA+TGG | + | chr1_1:4285408-4285427 | None:intergenic | 60.0% | |
| CGCCGAACCCGAAATCTCTC+AGG | + | chr1_1:4285979-4285998 | None:intergenic | 60.0% | |
| CCTCGCTTCTTAGTCTGGCC+AGG | + | chr1_1:4286162-4286181 | None:intergenic | 60.0% | |
| CCTGGCCAGACTAAGAAGCG+AGG | - | chr1_1:4286159-4286178 | Msa0002390:intron | 60.0% | |
| !! | TGGAGAGGAAGAGGGCATCG+AGG | - | chr1_1:4286905-4286924 | Msa0002390:CDS | 60.0% |
| CCTTGACTGTGCTGCCTCTG+TGG | + | chr1_1:4287202-4287221 | None:intergenic | 60.0% | |
| CCACAGAGGCAGCACAGTCA+AGG | - | chr1_1:4287199-4287218 | Msa0002390:CDS | 60.0% | |
| !! | CGAAGACGGGCTAGTCTCCG+AGG | - | chr1_1:4288142-4288161 | Msa0002390:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 4284584 | 4288490 | 4284584 | ID=Msa0002390;Name=Msa0002390 |
| chr1_1 | mRNA | 4284584 | 4288490 | 4284584 | ID=Msa0002390-mRNA-1;Parent=Msa0002390;Name=Msa0002390-mRNA-1;_AED=0.33;_eAED=0.33;_QI=213|1|1|1|1|1|4|279|400 |
| chr1_1 | exon | 4284584 | 4285174 | 4284584 | ID=Msa0002390-mRNA-1:exon:1348;Parent=Msa0002390-mRNA-1 |
| chr1_1 | exon | 4285745 | 4285869 | 4285745 | ID=Msa0002390-mRNA-1:exon:1347;Parent=Msa0002390-mRNA-1 |
| chr1_1 | exon | 4286822 | 4287476 | 4286822 | ID=Msa0002390-mRNA-1:exon:1346;Parent=Msa0002390-mRNA-1 |
| chr1_1 | exon | 4288167 | 4288490 | 4288167 | ID=Msa0002390-mRNA-1:exon:1345;Parent=Msa0002390-mRNA-1 |
| chr1_1 | five_prime_UTR | 4288278 | 4288490 | 4288278 | ID=Msa0002390-mRNA-1:five_prime_utr;Parent=Msa0002390-mRNA-1 |
| chr1_1 | CDS | 4288167 | 4288277 | 4288167 | ID=Msa0002390-mRNA-1:cds;Parent=Msa0002390-mRNA-1 |
| chr1_1 | CDS | 4286822 | 4287476 | 4286822 | ID=Msa0002390-mRNA-1:cds;Parent=Msa0002390-mRNA-1 |
| chr1_1 | CDS | 4285745 | 4285869 | 4285745 | ID=Msa0002390-mRNA-1:cds;Parent=Msa0002390-mRNA-1 |
| chr1_1 | CDS | 4284863 | 4285174 | 4284863 | ID=Msa0002390-mRNA-1:cds;Parent=Msa0002390-mRNA-1 |
| chr1_1 | three_prime_UTR | 4284584 | 4284862 | 4284584 | ID=Msa0002390-mRNA-1:three_prime_utr;Parent=Msa0002390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
