Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0051180 | sp|Q8RYD1|REM16_ARATH | 32.597 | 362 | 173 | 10 | 9 | 366 | 11 | 305 | 1.94e-47 | 168 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0051180 | G7I578 | 95.750 | 400 | 16 | 1 | 1 | 400 | 1 | 399 | 0.0 | 794 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0051180 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002390 | Msa0051180 | 0.967942 | 5.613654e-128 | -8.615850e-47 |
| Msa0051180 | Msa0051280 | 0.965801 | 4.453733e-125 | -8.615850e-47 |
| Msa0051180 | Msa0145460 | 0.882680 | 8.499854e-71 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0051180 | MtrunA17_Chr1g0154211 | 95.750 | 400 | 16 | 1 | 1 | 400 | 1 | 399 | 0.0 | 794 |
| Msa0051180 | MtrunA17_Chr1g0154111 | 67.105 | 380 | 98 | 5 | 6 | 382 | 9 | 364 | 6.67e-175 | 501 |
| Msa0051180 | MtrunA17_Chr1g0154111 | 56.710 | 231 | 60 | 6 | 38 | 255 | 368 | 571 | 1.35e-68 | 227 |
| Msa0051180 | MtrunA17_Chr1g0154101 | 58.352 | 449 | 116 | 6 | 7 | 388 | 168 | 612 | 4.28e-170 | 497 |
| Msa0051180 | MtrunA17_Chr1g0154101 | 75.776 | 161 | 39 | 0 | 6 | 166 | 8 | 168 | 6.86e-80 | 262 |
| Msa0051180 | MtrunA17_Chr1g0154101 | 32.041 | 387 | 202 | 11 | 20 | 397 | 503 | 837 | 1.83e-41 | 155 |
| Msa0051180 | MtrunA17_Chr1g0154131 | 64.533 | 375 | 62 | 7 | 7 | 380 | 168 | 472 | 5.47e-160 | 458 |
| Msa0051180 | MtrunA17_Chr1g0154131 | 76.398 | 161 | 37 | 1 | 6 | 166 | 9 | 168 | 2.92e-80 | 254 |
| Msa0051180 | MtrunA17_Chr1g0154171 | 60.202 | 397 | 114 | 5 | 1 | 396 | 1 | 354 | 8.11e-157 | 446 |
| Msa0051180 | MtrunA17_Chr1g0154191 | 55.473 | 402 | 127 | 4 | 6 | 396 | 5 | 365 | 5.68e-149 | 426 |
| Msa0051180 | MtrunA17_Chr1g0154071 | 56.417 | 374 | 136 | 7 | 11 | 383 | 145 | 492 | 1.01e-134 | 395 |
| Msa0051180 | MtrunA17_Chr1g0154071 | 74.265 | 136 | 34 | 1 | 3 | 138 | 8 | 142 | 6.88e-63 | 209 |
| Msa0051180 | MtrunA17_Chr1g0154151 | 53.867 | 362 | 106 | 8 | 38 | 395 | 19 | 323 | 7.59e-120 | 351 |
| Msa0051180 | MtrunA17_Chr1g0154241 | 67.578 | 256 | 73 | 5 | 6 | 255 | 5 | 256 | 6.24e-115 | 336 |
| Msa0051180 | MtrunA17_Chr1g0154251 | 50.256 | 390 | 156 | 11 | 6 | 363 | 10 | 393 | 9.61e-112 | 337 |
| Msa0051180 | MtrunA17_Chr1g0154161 | 90.511 | 137 | 13 | 0 | 4 | 140 | 11 | 147 | 5.69e-86 | 264 |
| Msa0051180 | MtrunA17_Chr1g0154161 | 49.029 | 206 | 95 | 2 | 192 | 396 | 122 | 318 | 4.98e-55 | 184 |
| Msa0051180 | MtrunA17_Chr1g0154041 | 41.979 | 374 | 183 | 8 | 22 | 388 | 15 | 361 | 1.63e-81 | 261 |
| Msa0051180 | MtrunA17_Chr1g0154041 | 31.606 | 386 | 207 | 12 | 20 | 396 | 252 | 589 | 3.87e-39 | 147 |
| Msa0051180 | MtrunA17_Chr1g0154121 | 62.366 | 93 | 33 | 1 | 305 | 395 | 1 | 93 | 5.00e-35 | 124 |
| Msa0051180 | MtrunA17_Chr6g0464121 | 56.000 | 75 | 32 | 1 | 309 | 382 | 122 | 196 | 1.28e-21 | 94.7 |
| Msa0051180 | MtrunA17_Chr7g0233571 | 37.755 | 98 | 61 | 0 | 16 | 113 | 3 | 100 | 7.50e-16 | 76.3 |
| Msa0051180 | MtrunA17_Chr3g0131891 | 35.484 | 93 | 60 | 0 | 21 | 113 | 17 | 109 | 3.74e-15 | 75.9 |
| Msa0051180 | MtrunA17_Chr7g0233561 | 36.957 | 92 | 58 | 0 | 21 | 112 | 16 | 107 | 6.44e-15 | 75.1 |
| Msa0051180 | MtrunA17_Chr7g0233531 | 40.000 | 75 | 45 | 0 | 39 | 113 | 2 | 76 | 2.46e-13 | 70.1 |
| Msa0051180 | MtrunA17_Chr5g0419201 | 36.264 | 91 | 58 | 0 | 23 | 113 | 16 | 106 | 1.82e-12 | 65.9 |
| Msa0051180 | MtrunA17_Chr7g0233541 | 37.975 | 79 | 49 | 0 | 39 | 117 | 2 | 80 | 2.15e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0051180 | AT4G33280.3 | 33.158 | 380 | 208 | 11 | 9 | 366 | 11 | 366 | 3.65e-50 | 174 |
| Msa0051180 | AT4G33280.1 | 32.597 | 362 | 173 | 10 | 9 | 366 | 11 | 305 | 1.98e-48 | 168 |
| Msa0051180 | AT4G33280.2 | 55.385 | 130 | 55 | 2 | 9 | 137 | 11 | 138 | 7.22e-45 | 157 |
| Msa0051180 | AT3G18990.2 | 24.810 | 395 | 230 | 10 | 23 | 399 | 6 | 351 | 3.63e-22 | 97.4 |
| Msa0051180 | AT3G18990.1 | 25.000 | 380 | 216 | 8 | 23 | 379 | 6 | 339 | 4.20e-22 | 96.7 |
| Msa0051180 | AT4G34400.2 | 35.644 | 101 | 61 | 2 | 23 | 122 | 17 | 114 | 1.23e-16 | 81.6 |
| Msa0051180 | AT4G34400.1 | 35.644 | 101 | 61 | 2 | 23 | 122 | 17 | 114 | 1.23e-16 | 81.6 |
| Msa0051180 | AT3G06220.1 | 30.233 | 129 | 80 | 4 | 23 | 151 | 11 | 129 | 1.88e-14 | 71.6 |
| Msa0051180 | AT3G06160.5 | 26.512 | 215 | 133 | 7 | 23 | 236 | 11 | 201 | 1.00e-13 | 72.0 |
| Msa0051180 | AT3G06160.4 | 26.512 | 215 | 133 | 7 | 23 | 236 | 11 | 201 | 1.00e-13 | 72.0 |
| Msa0051180 | AT3G06160.3 | 26.512 | 215 | 133 | 7 | 23 | 236 | 11 | 201 | 1.00e-13 | 72.0 |
| Msa0051180 | AT3G06160.1 | 26.512 | 215 | 133 | 7 | 23 | 236 | 26 | 216 | 1.06e-13 | 72.0 |
| Msa0051180 | AT3G06160.2 | 26.512 | 215 | 133 | 7 | 23 | 236 | 70 | 260 | 1.52e-13 | 72.0 |
| Msa0051180 | AT3G53310.1 | 35.165 | 91 | 57 | 1 | 23 | 113 | 12 | 100 | 6.65e-12 | 66.2 |
| Msa0051180 | AT5G60130.5 | 38.462 | 91 | 51 | 2 | 35 | 120 | 25 | 115 | 1.41e-11 | 64.7 |
| Msa0051180 | AT5G60130.3 | 39.326 | 89 | 49 | 2 | 37 | 120 | 1 | 89 | 2.18e-11 | 64.7 |
| Msa0051180 | AT5G66980.1 | 40.244 | 82 | 45 | 1 | 35 | 112 | 21 | 102 | 2.39e-11 | 65.1 |
| Msa0051180 | AT5G60130.2 | 39.326 | 89 | 49 | 2 | 37 | 120 | 27 | 115 | 2.84e-11 | 64.3 |
| Msa0051180 | AT5G60130.4 | 39.326 | 89 | 49 | 2 | 37 | 120 | 24 | 112 | 3.12e-11 | 64.7 |
| Msa0051180 | AT5G60140.1 | 32.727 | 110 | 69 | 2 | 14 | 120 | 7 | 114 | 3.16e-11 | 64.7 |
| Msa0051180 | AT5G60130.1 | 39.326 | 89 | 49 | 2 | 37 | 120 | 27 | 115 | 3.18e-11 | 64.7 |
Find 114 sgRNAs with CRISPR-Local
Find 253 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTCCAAGCTTTATGTTAT+TGG | 0.166151 | 1_2:+5276880 | None:intergenic |
| TCTTCCTCGTGAACCGTTAA+AGG | 0.176194 | 1_2:-5280256 | Msa0051180:five_prime_UTR |
| CAGCTCCACTAGGACCTTTA+AGG | 0.180866 | 1_2:+5279286 | None:intergenic |
| CCAGAAAATGTGACCCTTAA+AGG | 0.236805 | 1_2:-5279300 | Msa0051180:CDS |
| AACTTCATTAGCTGGCTTCT+TGG | 0.255515 | 1_2:+5278807 | None:intergenic |
| CCTTTGGCCGGTTGGTTGTT+TGG | 0.258620 | 1_2:+5278831 | None:intergenic |
| GAAAGTATTGATCATCAAAA+TGG | 0.270213 | 1_2:-5276767 | Msa0051180:CDS |
| TACAAGTTGTTGTTGAAAAT+TGG | 0.275640 | 1_2:+5280052 | None:intergenic |
| TGGTTGTTTGGGAAAGTAGA+TGG | 0.276616 | 1_2:+5278843 | None:intergenic |
| CTTTGGCCGGTTGGTTGTTT+GGG | 0.281327 | 1_2:+5278832 | None:intergenic |
| TCACGAGAATTACCTTCTTT+TGG | 0.284057 | 1_2:+5278751 | None:intergenic |
| TGGTTCACCTGAGAGATTTC+GGG | 0.291973 | 1_2:-5278971 | Msa0051180:CDS |
| CTCTCTGCTTCTGTTTGAAA+TGG | 0.300695 | 1_2:-5280162 | Msa0051180:exon |
| AGTGGAGCTGTGTGGGATAT+TGG | 0.305311 | 1_2:-5279273 | Msa0051180:CDS |
| GTGGTTCACCTGAGAGATTT+CGG | 0.308902 | 1_2:-5278972 | Msa0051180:CDS |
| TGTCGATGGTCCACGTATTC+TGG | 0.310730 | 1_2:-5277632 | Msa0051180:intron |
| AAGTAGATGGGGAGTTCCTT+AGG | 0.312746 | 1_2:+5278856 | None:intergenic |
| CTTGGGAAGAAGATATTTAC+TGG | 0.326346 | 1_2:-5280121 | Msa0051180:CDS |
| TTAGTGATGATACAGCTAAT+TGG | 0.326516 | 1_2:+5276588 | None:intergenic |
| GTCTTCCTCGCTTCTTAGTC+TGG | 0.344493 | 1_2:+5278776 | None:intergenic |
| TAGCTGGCTTCTTGGTCCTT+TGG | 0.354794 | 1_2:+5278815 | None:intergenic |
| CACCTGAGAGATTTCGGGTT+CGG | 0.376625 | 1_2:-5278966 | Msa0051180:CDS |
| CTTGTATGCACTCTACTTCT+AGG | 0.379008 | 1_2:+5276941 | None:intergenic |
| GTGGAGCTGTGTGGGATATT+GGG | 0.390357 | 1_2:-5279272 | Msa0051180:CDS |
| CAAGAATGTTAGCAAGTAGA+TGG | 0.391596 | 1_2:+5276706 | None:intergenic |
| ATAATCTTTATCTTGCCGTT+TGG | 0.397078 | 1_2:+5277007 | None:intergenic |
| TAGTGATGATACAGCTAATT+GGG | 0.397772 | 1_2:+5276589 | None:intergenic |
| GTGAGGGAGCACTTGATTTG+AGG | 0.403845 | 1_2:-5278732 | Msa0051180:CDS |
| CTTCCTCGTGAACCGTTAAA+GGG | 0.406379 | 1_2:-5280255 | Msa0051180:five_prime_UTR |
| TGTTTACTTCGTGGGCGGTT+GGG | 0.420992 | 1_2:-5279229 | Msa0051180:CDS |
| TGAGGGAGCACTTGATTTGA+GGG | 0.422320 | 1_2:-5278731 | Msa0051180:CDS |
| TAGGGCTTTAAACCCTTTAA+CGG | 0.424192 | 1_2:+5280243 | None:intergenic |
| CTGTTTACTTCGTGGGCGGT+TGG | 0.428777 | 1_2:-5279230 | Msa0051180:CDS |
| TTCTTGGTCCTTTGGCCGGT+TGG | 0.434930 | 1_2:+5278823 | None:intergenic |
| CTGTTTGAAATGGAAGTAGA+TGG | 0.435371 | 1_2:-5280152 | Msa0051180:exon |
| GGTTGTTTGGGAAAGTAGAT+GGG | 0.439627 | 1_2:+5278844 | None:intergenic |
| TGGCTTCTTGGTCCTTTGGC+CGG | 0.440342 | 1_2:+5278819 | None:intergenic |
| AAGTAGATGGAAGCAGATCT+TGG | 0.447214 | 1_2:-5280139 | Msa0051180:CDS |
| CCTCGCTTCTTAGTCTGGCC+AGG | 0.449815 | 1_2:+5278781 | None:intergenic |
| AGTAGATGGGGAGTTCCTTA+GGG | 0.454636 | 1_2:+5278857 | None:intergenic |
| CCAGGTGTAACTTCATTAGC+TGG | 0.461198 | 1_2:+5278799 | None:intergenic |
| GATGCGCTATGGAAAATTGA+TGG | 0.463928 | 1_2:+5277032 | None:intergenic |
| AGCTCCACTAGGACCTTTAA+GGG | 0.472647 | 1_2:+5279287 | None:intergenic |
| CGCCGAACCCGAAATCTCTC+AGG | 0.473424 | 1_2:+5278964 | None:intergenic |
| AAAGTATTGATCATCAAAAT+GGG | 0.485102 | 1_2:-5276766 | Msa0051180:CDS |
| GAAGTCAATACTGCTTCTAA+TGG | 0.487691 | 1_2:-5279006 | Msa0051180:CDS |
| GATGGTACTGTTTACTTCGT+GGG | 0.490529 | 1_2:-5279237 | Msa0051180:CDS |
| TACTTTCCCAAACAACCAAC+CGG | 0.491088 | 1_2:-5278838 | Msa0051180:CDS |
| CAACGGTGAATCTCTCTTTG+AGG | 0.491919 | 1_2:-5279151 | Msa0051180:CDS |
| GATTATTCTTCGTAATTTGA+AGG | 0.492590 | 1_2:-5276990 | Msa0051180:CDS |
| TCCATAGCGCATCTTCCAAA+CGG | 0.492621 | 1_2:-5277022 | Msa0051180:CDS |
| CGAGGAAGACCGCCAAAAGA+AGG | 0.494591 | 1_2:-5278763 | Msa0051180:CDS |
| AAGAACACAAACACATCTGT+TGG | 0.496016 | 1_2:-5279030 | Msa0051180:CDS |
| GCTAGTCTCCGAGGTTCAAA+AGG | 0.500197 | 1_2:-5276789 | Msa0051180:CDS |
| TTGCTGAGGTCGACGAAGAC+GGG | 0.500559 | 1_2:-5276811 | Msa0051180:CDS |
| GGACATGCTCAAACTGAAGA+AGG | 0.510328 | 1_2:-5279066 | Msa0051180:CDS |
| ATTATTCTTCGTAATTTGAA+GGG | 0.513122 | 1_2:-5276989 | Msa0051180:CDS |
| GTTGCTGAGGTCGACGAAGA+CGG | 0.514090 | 1_2:-5276812 | Msa0051180:CDS |
| AGTAGATGGAAGCAGATCTT+GGG | 0.514632 | 1_2:-5280138 | Msa0051180:CDS |
| AACAAAATATGGAAAAGTTG+AGG | 0.516177 | 1_2:+5277675 | None:intergenic |
| TATTGAATCTGCTTCCCCTA+AGG | 0.518194 | 1_2:-5278872 | Msa0051180:CDS |
| GAAAAGTTGAGGTAAATGAC+TGG | 0.520804 | 1_2:+5277686 | None:intergenic |
| AACAGAAGCAGAGAGTGAAA+TGG | 0.524263 | 1_2:+5280170 | None:intergenic |
| CACCGTTGTACTTAAAGACA+AGG | 0.534444 | 1_2:+5279166 | None:intergenic |
| ATGCGCTATGGAAAATTGAT+GGG | 0.534562 | 1_2:+5277033 | None:intergenic |
| TCCGTAGGCTCGTGAACTGT+TGG | 0.536321 | 1_2:-5276472 | Msa0051180:three_prime_UTR |
| AGATGGTACTGTTTACTTCG+TGG | 0.536376 | 1_2:-5279238 | Msa0051180:CDS |
| CGTGCCAATAACATAAAGCT+TGG | 0.537860 | 1_2:-5276884 | Msa0051180:CDS |
| GACATGCTCAAACTGAAGAA+GGG | 0.539180 | 1_2:-5279065 | Msa0051180:CDS |
| GCTTCTAACAAGGAACTCTC+AGG | 0.540714 | 1_2:-5278709 | Msa0051180:intron |
| ATCAAAACATTCAATGTCGA+TGG | 0.543207 | 1_2:-5277646 | Msa0051180:CDS |
| GCCGTTTGGAAGATGCGCTA+TGG | 0.543496 | 1_2:+5277021 | None:intergenic |
| CCAGCTAATGAAGTTACACC+TGG | 0.556435 | 1_2:-5278799 | Msa0051180:CDS |
| ACAGCTAATTGGGGTGTGAA+TGG | 0.556813 | 1_2:+5276599 | None:intergenic |
| TTCCTTGTCTTTAAGTACAA+CGG | 0.557608 | 1_2:-5279168 | Msa0051180:CDS |
| TGGAGTTAGTTTCTGTGAGA+AGG | 0.558125 | 1_2:-5279115 | Msa0051180:CDS |
| CATGAATTATGATGATACAT+TGG | 0.565560 | 1_2:+5276659 | None:intergenic |
| ACCAACAGTTCACGAGCCTA+CGG | 0.567318 | 1_2:+5276471 | None:intergenic |
| AGGTCCTAGTGGAGCTGTGT+GGG | 0.568073 | 1_2:-5279280 | Msa0051180:CDS |
| TGATTTGAGGGCTTCTAACA+AGG | 0.574575 | 1_2:-5278719 | Msa0051180:CDS |
| CCAAACAACCAACCGGCCAA+AGG | 0.585015 | 1_2:-5278831 | Msa0051180:CDS |
| ATATCCCACACAGCTCCACT+AGG | 0.588180 | 1_2:+5279276 | None:intergenic |
| GTTGTTTGGGAAAGTAGATG+GGG | 0.591431 | 1_2:+5278845 | None:intergenic |
| CGGTTCACGAGGAAGATGAA+TGG | 0.593697 | 1_2:+5280263 | None:intergenic |
| GTCAATACTGCTTCTAATGG+TGG | 0.601970 | 1_2:-5279003 | Msa0051180:CDS |
| CATACAAGTCACACTTTGTG+TGG | 0.602821 | 1_2:-5276926 | Msa0051180:CDS |
| TCTAATGGTGGCGTTGACTG+TGG | 0.604326 | 1_2:-5278991 | Msa0051180:CDS |
| GTCAAGGTTATCGTCAGCAA+AGG | 0.607838 | 1_2:-5277725 | Msa0051180:CDS |
| AAGTTGTTGTTGAAAATTGG+TGG | 0.610802 | 1_2:+5280055 | None:intergenic |
| GTCACACTTTGTGTGGAGGA+TGG | 0.614641 | 1_2:-5276919 | Msa0051180:CDS |
| AGTCTGTCATAGGTCAACCT+AGG | 0.615410 | 1_2:+5280356 | None:intergenic |
| AAAAGTTGAGGTAAATGACT+GGG | 0.616205 | 1_2:+5277687 | None:intergenic |
| AAGGTCCTAGTGGAGCTGTG+TGG | 0.617527 | 1_2:-5279281 | Msa0051180:CDS |
| ATTACGTGTCCGTGTTGCTG+AGG | 0.620142 | 1_2:-5276825 | Msa0051180:CDS |
| ACATGCTCAAACTGAAGAAG+GGG | 0.624407 | 1_2:-5279064 | Msa0051180:CDS |
| AAAAGAAGGTAATTCTCGTG+AGG | 0.624894 | 1_2:-5278749 | Msa0051180:CDS |
| GTGACCCTTAAAGGTCCTAG+TGG | 0.630968 | 1_2:-5279291 | Msa0051180:CDS |
| GAACAACTCACCAGAATACG+TGG | 0.631909 | 1_2:+5277622 | None:intergenic |
| AAAGAAGGTAATTCTCGTGA+GGG | 0.632567 | 1_2:-5278748 | Msa0051180:CDS |
| TTCACGAGGAAGATGAATGG+TGG | 0.634155 | 1_2:+5280266 | None:intergenic |
| CCACAGAGGCAGCACAGTCA+AGG | 0.637815 | 1_2:-5277741 | Msa0051180:intron |
| ATTGGGTTGACAACTAGAGA+TGG | 0.647577 | 1_2:-5279255 | Msa0051180:CDS |
| GTAATTTGAAGGGAGAACAG+TGG | 0.655181 | 1_2:-5276979 | Msa0051180:CDS |
| AAACCCTTTAACGGTTCACG+AGG | 0.657561 | 1_2:+5280252 | None:intergenic |
| AGTGATGATACAGCTAATTG+GGG | 0.658407 | 1_2:+5276590 | None:intergenic |
| GGTACTGTTTACTTCGTGGG+CGG | 0.659429 | 1_2:-5279234 | Msa0051180:CDS |
| TTGTCTATATAACATTCCGT+AGG | 0.662376 | 1_2:-5276487 | Msa0051180:three_prime_UTR |
| CTTCGTCGACCTCAGCAACA+CGG | 0.662749 | 1_2:+5276816 | None:intergenic |
| CGAAGACGGGCTAGTCTCCG+AGG | 0.666474 | 1_2:-5276798 | Msa0051180:CDS |
| TGCGCTATGGAAAATTGATG+GGG | 0.667850 | 1_2:+5277034 | None:intergenic |
| ACAAGTCACACTTTGTGTGG+AGG | 0.672770 | 1_2:-5276923 | Msa0051180:CDS |
| GTAGATGGGGAGTTCCTTAG+GGG | 0.675019 | 1_2:+5278858 | None:intergenic |
| CATGCTCAAACTGAAGAAGG+GGG | 0.720080 | 1_2:-5279063 | Msa0051180:CDS |
| CCTGGCCAGACTAAGAAGCG+AGG | 0.722966 | 1_2:-5278781 | Msa0051180:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAATGTAGTAAAATTTAA+TGG | + | chr1_2:5278165-5278184 | None:intergenic | 10.0% |
| !!! | TTGATTATTTTAACAAAATA+TGG | + | chr1_2:5279167-5279186 | None:intergenic | 10.0% |
| !! | ACAAAAATTAAACCTTTATA+AGG | - | chr1_2:5276844-5276863 | Msa0051180:CDS | 15.0% |
| !! | AGATACAAAATTTAAAAGAT+GGG | + | chr1_2:5276912-5276931 | None:intergenic | 15.0% |
| !! | AAGATACAAAATTTAAAAGA+TGG | + | chr1_2:5276913-5276932 | None:intergenic | 15.0% |
| !! | TATACTATATGTTCAAAATA+TGG | + | chr1_2:5277025-5277044 | None:intergenic | 15.0% |
| !!! | ATTAATTATGTTTAGCTTTT+AGG | - | chr1_2:5277177-5277196 | Msa0051180:intron | 15.0% |
| !!! | ACTTTTCAAAAACAAAATTA+AGG | - | chr1_2:5277252-5277271 | Msa0051180:intron | 15.0% |
| !!! | CTTTTCAAAAACAAAATTAA+GGG | - | chr1_2:5277253-5277272 | Msa0051180:intron | 15.0% |
| !!! | TTTTCAAAAACAAAATTAAG+GGG | - | chr1_2:5277254-5277273 | Msa0051180:intron | 15.0% |
| !! | GAAGTTTATATATAATGTAT+TGG | - | chr1_2:5278562-5278581 | Msa0051180:intron | 15.0% |
| !!! | AATCATGAGTTTAAAATAAA+AGG | + | chr1_2:5279054-5279073 | None:intergenic | 15.0% |
| !! | AAAAAACTAACAATTACAAT+TGG | + | chr1_2:5279635-5279654 | None:intergenic | 15.0% |
| !! | AAAAAGAGAAAAAGAATGAA+GGG | + | chr1_2:5276808-5276827 | None:intergenic | 20.0% |
| !! | TAAAAAGAGAAAAAGAATGA+AGG | + | chr1_2:5276809-5276828 | None:intergenic | 20.0% |
| !!! | TTAATTTTTGTTAACATGGA+AGG | + | chr1_2:5276835-5276854 | None:intergenic | 20.0% |
| !!! | AGGTTTAATTTTTGTTAACA+TGG | + | chr1_2:5276839-5276858 | None:intergenic | 20.0% |
| !!! | TTTATAAGGTTTTCATACTT+GGG | - | chr1_2:5276858-5276877 | Msa0051180:CDS | 20.0% |
| !!! | ATATGCTTGTTTTTACATAA+TGG | - | chr1_2:5277052-5277071 | Msa0051180:intron | 20.0% |
| !! | TTTCAAAAACAAAATTAAGG+GGG | - | chr1_2:5277255-5277274 | Msa0051180:intron | 20.0% |
| !! | TCAAGCAAATTATTATCTTT+AGG | - | chr1_2:5277408-5277427 | Msa0051180:intron | 20.0% |
| !!! | AAATTGTCTGAAAATGTTTT+AGG | + | chr1_2:5277495-5277514 | None:intergenic | 20.0% |
| !!! | TCTTATTTTGTTAGAAAATG+TGG | - | chr1_2:5277741-5277760 | Msa0051180:intron | 20.0% |
| !! | ACAAATTTGACAAAAAAAAC+TGG | + | chr1_2:5278484-5278503 | None:intergenic | 20.0% |
| !! | TAAAATAAAAGGATAATCTC+TGG | + | chr1_2:5279043-5279062 | None:intergenic | 20.0% |
| !! | GTAAATTAAGAATCACAAAA+GGG | + | chr1_2:5279231-5279250 | None:intergenic | 20.0% |
| !! | GAGATAAAACAACATTATTT+GGG | + | chr1_2:5279256-5279275 | None:intergenic | 20.0% |
| !! | AGAGATAAAACAACATTATT+TGG | + | chr1_2:5279257-5279276 | None:intergenic | 20.0% |
| !!! | ACAGGAAATATTAACTTTTA+AGG | + | chr1_2:5279659-5279678 | None:intergenic | 20.0% |
| !! | ATTTCCTGTATTAAGTTTAT+TGG | - | chr1_2:5279670-5279689 | Msa0051180:intron | 20.0% |
| !! | ATTATTCTTCGTAATTTGAA+GGG | - | chr1_2:5279839-5279858 | Msa0051180:intron | 20.0% |
| !!! | AAAGTATTGATCATCAAAAT+GGG | - | chr1_2:5280062-5280081 | Msa0051180:CDS | 20.0% |
| !!! | ATTCTTAGTATATGTTTTAG+AGG | - | chr1_2:5280203-5280222 | Msa0051180:five_prime_UTR | 20.0% |
| !!! | TTTTAAGAAATTGGGTGAAA+TGG | + | chr1_2:5276750-5276769 | None:intergenic | 25.0% |
| !! | TACAAGTTGTTGTTGAAAAT+TGG | + | chr1_2:5276779-5276798 | None:intergenic | 25.0% |
| ! | CAAGTATGAAAACCTTATAA+AGG | + | chr1_2:5276859-5276878 | None:intergenic | 25.0% |
| !! | CTTTATAAGGTTTTCATACT+TGG | - | chr1_2:5276857-5276876 | Msa0051180:CDS | 25.0% |
| !!! | AGTTTTCAGCTTTTGATTAT+TGG | - | chr1_2:5276972-5276991 | Msa0051180:CDS | 25.0% |
| !!! | TTGTTTTTACATAATGGCTT+AGG | - | chr1_2:5277058-5277077 | Msa0051180:intron | 25.0% |
| !!! | GGAAATTATATTTTAACTGC+AGG | - | chr1_2:5277464-5277483 | Msa0051180:intron | 25.0% |
| !!! | TTTGAGGTTTTAATCTTTGA+TGG | - | chr1_2:5277693-5277712 | Msa0051180:CDS | 25.0% |
| !!! | ATTTTATCAGTAGTTTTGAC+AGG | + | chr1_2:5277921-5277940 | None:intergenic | 25.0% |
| ! | GTTATAGATACTAAATAAGC+TGG | + | chr1_2:5278189-5278208 | None:intergenic | 25.0% |
| !! | GTTTAGTATCGAATTAAGAT+AGG | + | chr1_2:5278335-5278354 | None:intergenic | 25.0% |
| ! | ACATCTAGTATGTATCTATT+TGG | - | chr1_2:5278373-5278392 | Msa0051180:intron | 25.0% |
| ! | AAAATTCATCATAGTGAATC+AGG | + | chr1_2:5278419-5278438 | None:intergenic | 25.0% |
| ! | ATTTGACAAAAAAAACTGGT+TGG | + | chr1_2:5278480-5278499 | None:intergenic | 25.0% |
| ! | TCAAATGACAAAAAGAAAAG+TGG | + | chr1_2:5278515-5278534 | None:intergenic | 25.0% |
| ! | AAAATGACATACTTTCTGAT+AGG | - | chr1_2:5278619-5278638 | Msa0051180:intron | 25.0% |
| ! | AACAAAATATGGAAAAGTTG+AGG | + | chr1_2:5279156-5279175 | None:intergenic | 25.0% |
| ! | GGTAAATTAAGAATCACAAA+AGG | + | chr1_2:5279232-5279251 | None:intergenic | 25.0% |
| ! | ATAAAACAACATTATTTGGG+AGG | + | chr1_2:5279253-5279272 | None:intergenic | 25.0% |
| ! | AAGTTACTTAAAGATAGAGA+CGG | + | chr1_2:5279280-5279299 | None:intergenic | 25.0% |
| ! | GATTATTCTTCGTAATTTGA+AGG | - | chr1_2:5279838-5279857 | Msa0051180:intron | 25.0% |
| !!! | GAAAGTATTGATCATCAAAA+TGG | - | chr1_2:5280061-5280080 | Msa0051180:CDS | 25.0% |
| ! | CATGAATTATGATGATACAT+TGG | + | chr1_2:5280172-5280191 | None:intergenic | 25.0% |
| !! | CATTCATTTTAGTCTGTCAT+AGG | + | chr1_2:5276485-5276504 | None:intergenic | 30.0% |
| ! | AAAAAGGAAAGAAGGGTATA+GGG | + | chr1_2:5276606-5276625 | None:intergenic | 30.0% |
| !!! | TTTTGGTTTGAGGAAGAAAA+AGG | + | chr1_2:5276622-5276641 | None:intergenic | 30.0% |
| !!! | GGTGGTAGTTTTAAGAAATT+GGG | + | chr1_2:5276758-5276777 | None:intergenic | 30.0% |
| !!! | TGGTGGTAGTTTTAAGAAAT+TGG | + | chr1_2:5276759-5276778 | None:intergenic | 30.0% |
| ! | AAGTTGTTGTTGAAAATTGG+TGG | + | chr1_2:5276776-5276795 | None:intergenic | 30.0% |
| ATAGAACTAACTGCAGTTAA+AGG | + | chr1_2:5276945-5276964 | None:intergenic | 30.0% | |
| !! | TAAGGGGGAAATTTTGATAT+TGG | - | chr1_2:5277270-5277289 | Msa0051180:intron | 30.0% |
| ! | ACGTATCTTTTAATCTCAGA+TGG | - | chr1_2:5277443-5277462 | Msa0051180:intron | 30.0% |
| TTCCTTGTCTTTAAGTACAA+CGG | - | chr1_2:5277660-5277679 | Msa0051180:CDS | 30.0% | |
| TCTATAACTTTCTGATGTCA+TGG | - | chr1_2:5278201-5278220 | Msa0051180:intron | 30.0% | |
| TCCTGTGTATCTATAAAAAG+GGG | + | chr1_2:5278310-5278329 | None:intergenic | 30.0% | |
| CTCCTGTGTATCTATAAAAA+GGG | + | chr1_2:5278311-5278330 | None:intergenic | 30.0% | |
| ACTCCTGTGTATCTATAAAA+AGG | + | chr1_2:5278312-5278331 | None:intergenic | 30.0% | |
| TATGTCATCTGCTAAAGTTA+AGG | + | chr1_2:5278646-5278665 | None:intergenic | 30.0% | |
| TTAACTTTAGCAGATGACAT+AGG | - | chr1_2:5278645-5278664 | Msa0051180:intron | 30.0% | |
| ACATAAACTGCCTACAATTT+GGG | + | chr1_2:5278693-5278712 | None:intergenic | 30.0% | |
| !! | GGAAGAATCATTGTTTTGTT+TGG | - | chr1_2:5278814-5278833 | Msa0051180:CDS | 30.0% |
| AAAAGTTGAGGTAAATGACT+GGG | + | chr1_2:5279144-5279163 | None:intergenic | 30.0% | |
| ATCAAAACATTCAATGTCGA+TGG | - | chr1_2:5279182-5279201 | Msa0051180:CDS | 30.0% | |
| ! | AGCATTTCTCCTTTTATGTA+TGG | - | chr1_2:5279343-5279362 | Msa0051180:CDS | 30.0% |
| ! | ATTTCTCCTTTTATGTATGG+AGG | - | chr1_2:5279346-5279365 | Msa0051180:intron | 30.0% |
| ! | TCATTGAAATCGTCTTTTAC+TGG | + | chr1_2:5279412-5279431 | None:intergenic | 30.0% |
| ! | GATTGACTCATAAATTAGGA+TGG | + | chr1_2:5279452-5279471 | None:intergenic | 30.0% |
| ! | CCAAGATTGACTCATAAATT+AGG | + | chr1_2:5279456-5279475 | None:intergenic | 30.0% |
| CCTAATTTATGAGTCAATCT+TGG | - | chr1_2:5279453-5279472 | Msa0051180:intron | 30.0% | |
| CAATTACAATTGGTACTTCT+TGG | + | chr1_2:5279625-5279644 | None:intergenic | 30.0% | |
| ACGACCAATAAACTTAATAC+AGG | + | chr1_2:5279677-5279696 | None:intergenic | 30.0% | |
| ATAATCTTTATCTTGCCGTT+TGG | + | chr1_2:5279824-5279843 | None:intergenic | 30.0% | |
| ! | ATCTCCAAGCTTTATGTTAT+TGG | + | chr1_2:5279951-5279970 | None:intergenic | 30.0% |
| ! | AATACTTTCCTTTTGAACCT+CGG | + | chr1_2:5280050-5280069 | None:intergenic | 30.0% |
| TAGTGATGATACAGCTAATT+GGG | + | chr1_2:5280242-5280261 | None:intergenic | 30.0% | |
| TTAGTGATGATACAGCTAAT+TGG | + | chr1_2:5280243-5280262 | None:intergenic | 30.0% | |
| TTGTCTATATAACATTCCGT+AGG | - | chr1_2:5280341-5280360 | Msa0051180:five_prime_UTR | 30.0% | |
| !! | TAGGGCTTTAAACCCTTTAA+CGG | + | chr1_2:5276588-5276607 | None:intergenic | 35.0% |
| ! | GAAAAAGGAAAGAAGGGTAT+AGG | + | chr1_2:5276607-5276626 | None:intergenic | 35.0% |
| GAGGAAGAAAAAGGAAAGAA+GGG | + | chr1_2:5276613-5276632 | None:intergenic | 35.0% | |
| TGAGGAAGAAAAAGGAAAGA+AGG | + | chr1_2:5276614-5276633 | None:intergenic | 35.0% | |
| ! | GTTCAAAGTTGCAAGCTTTT+TGG | + | chr1_2:5276639-5276658 | None:intergenic | 35.0% |
| ! | CTGTTTGAAATGGAAGTAGA+TGG | - | chr1_2:5276676-5276695 | Msa0051180:three_prime_UTR | 35.0% |
| CTTGGGAAGAAGATATTTAC+TGG | - | chr1_2:5276707-5276726 | Msa0051180:three_prime_UTR | 35.0% | |
| TTTATTATTCCTTTCCTGCC+TGG | - | chr1_2:5277200-5277219 | Msa0051180:intron | 35.0% | |
| GATTTGAACCTTGAAGATTG+AGG | - | chr1_2:5277315-5277334 | Msa0051180:intron | 35.0% | |
| TGTTGTAACCTCAATCTTCA+AGG | + | chr1_2:5277326-5277345 | None:intergenic | 35.0% | |
| ACATGATTCACATACACTTG+AGG | + | chr1_2:5277360-5277379 | None:intergenic | 35.0% | |
| AAGAACACAAACACATCTGT+TGG | - | chr1_2:5277798-5277817 | Msa0051180:intron | 35.0% | |
| GAAGTCAATACTGCTTCTAA+TGG | - | chr1_2:5277822-5277841 | Msa0051180:intron | 35.0% | |
| ! | TCACGAGAATTACCTTCTTT+TGG | + | chr1_2:5278080-5278099 | None:intergenic | 35.0% |
| AAAAGAAGGTAATTCTCGTG+AGG | - | chr1_2:5278079-5278098 | Msa0051180:intron | 35.0% | |
| AAAGAAGGTAATTCTCGTGA+GGG | - | chr1_2:5278080-5278099 | Msa0051180:intron | 35.0% | |
| ! | ACTAGTTTGTGCAATGAACA+TGG | + | chr1_2:5278282-5278301 | None:intergenic | 35.0% |
| ! | TCCCCTTTTTATAGATACAC+AGG | - | chr1_2:5278306-5278325 | Msa0051180:intron | 35.0% |
| ACTAGATGTTCGCATCAATT+GGG | + | chr1_2:5278362-5278381 | None:intergenic | 35.0% | |
| TACTAGATGTTCGCATCAAT+TGG | + | chr1_2:5278363-5278382 | None:intergenic | 35.0% | |
| CACATAAACTGCCTACAATT+TGG | + | chr1_2:5278694-5278713 | None:intergenic | 35.0% | |
| AATTGTAGGCAGTTTATGTG+AGG | - | chr1_2:5278694-5278713 | Msa0051180:intron | 35.0% | |
| AGTGAAAAGACACTATTCTC+TGG | + | chr1_2:5278840-5278859 | None:intergenic | 35.0% | |
| CGAGAAATTAAAGAGAAACC+GGG | + | chr1_2:5278931-5278950 | None:intergenic | 35.0% | |
| GCGAGAAATTAAAGAGAAAC+CGG | + | chr1_2:5278932-5278951 | None:intergenic | 35.0% | |
| TGAATTGTTCAATTCCACAG+AGG | - | chr1_2:5279073-5279092 | Msa0051180:CDS | 35.0% | |
| GAAAAGTTGAGGTAAATGAC+TGG | + | chr1_2:5279145-5279164 | None:intergenic | 35.0% | |
| TACCATCCTCCATACATAAA+AGG | + | chr1_2:5279355-5279374 | None:intergenic | 35.0% | |
| AGTAGTTGAGAAGTTTGTCA+AGG | + | chr1_2:5279552-5279571 | None:intergenic | 35.0% | |
| TAATGCCAAGCACATTGAAT+GGG | + | chr1_2:5279722-5279741 | None:intergenic | 35.0% | |
| TTAATGCCAAGCACATTGAA+TGG | + | chr1_2:5279723-5279742 | None:intergenic | 35.0% | |
| ATGCGCTATGGAAAATTGAT+GGG | + | chr1_2:5279798-5279817 | None:intergenic | 35.0% | |
| CAAGAATGTTAGCAAGTAGA+TGG | + | chr1_2:5280125-5280144 | None:intergenic | 35.0% | |
| AGTGATGATACAGCTAATTG+GGG | + | chr1_2:5280241-5280260 | None:intergenic | 35.0% | |
| !!! | GTTGCAAGCTTTTTGGTTTG+AGG | + | chr1_2:5276632-5276651 | None:intergenic | 40.0% |
| AACAGAAGCAGAGAGTGAAA+TGG | + | chr1_2:5276661-5276680 | None:intergenic | 40.0% | |
| CTCTCTGCTTCTGTTTGAAA+TGG | - | chr1_2:5276666-5276685 | Msa0051180:three_prime_UTR | 40.0% | |
| AAGTAGATGGAAGCAGATCT+TGG | - | chr1_2:5276689-5276708 | Msa0051180:three_prime_UTR | 40.0% | |
| AGTAGATGGAAGCAGATCTT+GGG | - | chr1_2:5276690-5276709 | Msa0051180:three_prime_UTR | 40.0% | |
| TAGATAGTGTTTGCAGAACC+AGG | + | chr1_2:5277221-5277240 | None:intergenic | 40.0% | |
| !! | CCTTTAAGGGTCACATTTTC+TGG | + | chr1_2:5277531-5277550 | None:intergenic | 40.0% |
| CCAGAAAATGTGACCCTTAA+AGG | - | chr1_2:5277528-5277547 | Msa0051180:intron | 40.0% | |
| !! | ATTGGGTTGACAACTAGAGA+TGG | - | chr1_2:5277573-5277592 | Msa0051180:intron | 40.0% |
| AGATGGTACTGTTTACTTCG+TGG | - | chr1_2:5277590-5277609 | Msa0051180:intron | 40.0% | |
| GATGGTACTGTTTACTTCGT+GGG | - | chr1_2:5277591-5277610 | Msa0051180:intron | 40.0% | |
| CACCGTTGTACTTAAAGACA+AGG | + | chr1_2:5277665-5277684 | None:intergenic | 40.0% | |
| ! | TGGAGTTAGTTTCTGTGAGA+AGG | - | chr1_2:5277713-5277732 | Msa0051180:CDS | 40.0% |
| GACATGCTCAAACTGAAGAA+GGG | - | chr1_2:5277763-5277782 | Msa0051180:intron | 40.0% | |
| ACATGCTCAAACTGAAGAAG+GGG | - | chr1_2:5277764-5277783 | Msa0051180:intron | 40.0% | |
| GTCAATACTGCTTCTAATGG+TGG | - | chr1_2:5277825-5277844 | Msa0051180:intron | 40.0% | |
| !! | GTTTTGACAGGTACAGCTAA+TGG | + | chr1_2:5277909-5277928 | None:intergenic | 40.0% |
| TATTGAATCTGCTTCCCCTA+AGG | - | chr1_2:5277956-5277975 | Msa0051180:intron | 40.0% | |
| GTTGTTTGGGAAAGTAGATG+GGG | + | chr1_2:5277986-5278005 | None:intergenic | 40.0% | |
| GGTTGTTTGGGAAAGTAGAT+GGG | + | chr1_2:5277987-5278006 | None:intergenic | 40.0% | |
| TGGTTGTTTGGGAAAGTAGA+TGG | + | chr1_2:5277988-5278007 | None:intergenic | 40.0% | |
| TACTTTCCCAAACAACCAAC+CGG | - | chr1_2:5277990-5278009 | Msa0051180:intron | 40.0% | |
| ! | AACTTCATTAGCTGGCTTCT+TGG | + | chr1_2:5278024-5278043 | None:intergenic | 40.0% |
| ! | CGAGAATTACCTTCTTTTGG+CGG | + | chr1_2:5278077-5278096 | None:intergenic | 40.0% |
| TGATTTGAGGGCTTCTAACA+AGG | - | chr1_2:5278109-5278128 | Msa0051180:intron | 40.0% | |
| AGGGAATAAGCCCAAATTGT+AGG | - | chr1_2:5278680-5278699 | Msa0051180:intron | 40.0% | |
| AGAAACAGTAACAGAGAGGA+GGG | - | chr1_2:5278717-5278736 | Msa0051180:CDS | 40.0% | |
| !! | GAGAATTAGTGGATTGCTTG+AGG | - | chr1_2:5278745-5278764 | Msa0051180:CDS | 40.0% |
| !! | TAGTGGATTGCTTGAGGATT+CGG | - | chr1_2:5278751-5278770 | Msa0051180:CDS | 40.0% |
| ! | CTTGAGGATTCGGTTATATG+AGG | - | chr1_2:5278761-5278780 | Msa0051180:CDS | 40.0% |
| ! | AGGATTCGGTTATATGAGGT+GGG | - | chr1_2:5278765-5278784 | Msa0051180:CDS | 40.0% |
| !! | TGTGTAGAGCATTGCTCTTT+GGG | - | chr1_2:5278859-5278878 | Msa0051180:CDS | 40.0% |
| TAGCAATCTGACACTTGTCA+AGG | - | chr1_2:5278982-5279001 | Msa0051180:CDS | 40.0% | |
| ! | CTCCTTTTATGTATGGAGGA+TGG | - | chr1_2:5279350-5279369 | Msa0051180:intron | 40.0% |
| TTCATCCCATTCAATGTGCT+TGG | - | chr1_2:5279714-5279733 | Msa0051180:intron | 40.0% | |
| TGCGCTATGGAAAATTGATG+GGG | + | chr1_2:5279797-5279816 | None:intergenic | 40.0% | |
| GATGCGCTATGGAAAATTGA+TGG | + | chr1_2:5279799-5279818 | None:intergenic | 40.0% | |
| GTAATTTGAAGGGAGAACAG+TGG | - | chr1_2:5279849-5279868 | Msa0051180:intron | 40.0% | |
| CTTGTATGCACTCTACTTCT+AGG | + | chr1_2:5279890-5279909 | None:intergenic | 40.0% | |
| CATACAAGTCACACTTTGTG+TGG | - | chr1_2:5279902-5279921 | Msa0051180:intron | 40.0% | |
| CGTGCCAATAACATAAAGCT+TGG | - | chr1_2:5279944-5279963 | Msa0051180:intron | 40.0% | |
| AGTCTGTCATAGGTCAACCT+AGG | + | chr1_2:5276475-5276494 | None:intergenic | 45.0% | |
| TTCACGAGGAAGATGAATGG+TGG | + | chr1_2:5276565-5276584 | None:intergenic | 45.0% | |
| TCTTCCTCGTGAACCGTTAA+AGG | - | chr1_2:5276572-5276591 | Msa0051180:three_prime_UTR | 45.0% | |
| CTTCCTCGTGAACCGTTAAA+GGG | - | chr1_2:5276573-5276592 | Msa0051180:three_prime_UTR | 45.0% | |
| AAACCCTTTAACGGTTCACG+AGG | + | chr1_2:5276579-5276598 | None:intergenic | 45.0% | |
| TTCAAGGTTCAAATCCCCTC+GGG | + | chr1_2:5277310-5277329 | None:intergenic | 45.0% | |
| CTTCAAGGTTCAAATCCCCT+CGG | + | chr1_2:5277311-5277330 | None:intergenic | 45.0% | |
| AGCTCCACTAGGACCTTTAA+GGG | + | chr1_2:5277544-5277563 | None:intergenic | 45.0% | |
| CAACGGTGAATCTCTCTTTG+AGG | - | chr1_2:5277677-5277696 | Msa0051180:CDS | 45.0% | |
| GGACATGCTCAAACTGAAGA+AGG | - | chr1_2:5277762-5277781 | Msa0051180:intron | 45.0% | |
| CATGCTCAAACTGAAGAAGG+GGG | - | chr1_2:5277765-5277784 | Msa0051180:intron | 45.0% | |
| GTGGTTCACCTGAGAGATTT+CGG | - | chr1_2:5277856-5277875 | Msa0051180:intron | 45.0% | |
| TGGTTCACCTGAGAGATTTC+GGG | - | chr1_2:5277857-5277876 | Msa0051180:intron | 45.0% | |
| AGTAGATGGGGAGTTCCTTA+GGG | + | chr1_2:5277974-5277993 | None:intergenic | 45.0% | |
| AAGTAGATGGGGAGTTCCTT+AGG | + | chr1_2:5277975-5277994 | None:intergenic | 45.0% | |
| CCAGGTGTAACTTCATTAGC+TGG | + | chr1_2:5278032-5278051 | None:intergenic | 45.0% | |
| CCAGCTAATGAAGTTACACC+TGG | - | chr1_2:5278029-5278048 | Msa0051180:intron | 45.0% | |
| !! | TGAGGGAGCACTTGATTTGA+GGG | - | chr1_2:5278097-5278116 | Msa0051180:intron | 45.0% |
| GCTTCTAACAAGGAACTCTC+AGG | - | chr1_2:5278119-5278138 | Msa0051180:intron | 45.0% | |
| ! | TGGTTGGCTACTCTGAGTTT+AGG | + | chr1_2:5278464-5278483 | None:intergenic | 45.0% |
| ACATAGGCCTGAGTGACAAA+GGG | - | chr1_2:5278661-5278680 | Msa0051180:intron | 45.0% | |
| GCTTATTCCCTTTGTCACTC+AGG | + | chr1_2:5278671-5278690 | None:intergenic | 45.0% | |
| GAGGAGAAACAGTAACAGAG+AGG | - | chr1_2:5278713-5278732 | Msa0051180:CDS | 45.0% | |
| GAGAAACAGTAACAGAGAGG+AGG | - | chr1_2:5278716-5278735 | Msa0051180:CDS | 45.0% | |
| GGAGGGAAAGTGAGAATTAG+TGG | - | chr1_2:5278734-5278753 | Msa0051180:CDS | 45.0% | |
| ! | GAGGATTCGGTTATATGAGG+TGG | - | chr1_2:5278764-5278783 | Msa0051180:CDS | 45.0% |
| GTTATATGAGGTGGGAGTTG+TGG | - | chr1_2:5278773-5278792 | Msa0051180:CDS | 45.0% | |
| !! | CTGTGTAGAGCATTGCTCTT+TGG | - | chr1_2:5278858-5278877 | Msa0051180:CDS | 45.0% |
| GAGAAACCGGGAATTGCAAA+TGG | + | chr1_2:5278919-5278938 | None:intergenic | 45.0% | |
| GTCAAGGTTATCGTCAGCAA+AGG | - | chr1_2:5279103-5279122 | Msa0051180:CDS | 45.0% | |
| GAACAACTCACCAGAATACG+TGG | + | chr1_2:5279209-5279228 | None:intergenic | 45.0% | |
| TGTATGGAGGATGGTAAGCA+TGG | - | chr1_2:5279359-5279378 | Msa0051180:intron | 45.0% | |
| TCCATAGCGCATCTTCCAAA+CGG | - | chr1_2:5279806-5279825 | Msa0051180:intron | 45.0% | |
| ACAAGTCACACTTTGTGTGG+AGG | - | chr1_2:5279905-5279924 | Msa0051180:intron | 45.0% | |
| ACAGCTAATTGGGGTGTGAA+TGG | + | chr1_2:5280232-5280251 | None:intergenic | 45.0% | |
| CGGTTCACGAGGAAGATGAA+TGG | + | chr1_2:5276568-5276587 | None:intergenic | 50.0% | |
| TTTGCAGAACCAGGCAGGAA+AGG | + | chr1_2:5277212-5277231 | None:intergenic | 50.0% | |
| TAGTGTTTGCAGAACCAGGC+AGG | + | chr1_2:5277217-5277236 | None:intergenic | 50.0% | |
| GTGACCCTTAAAGGTCCTAG+TGG | - | chr1_2:5277537-5277556 | Msa0051180:intron | 50.0% | |
| CAGCTCCACTAGGACCTTTA+AGG | + | chr1_2:5277545-5277564 | None:intergenic | 50.0% | |
| ATATCCCACACAGCTCCACT+AGG | + | chr1_2:5277555-5277574 | None:intergenic | 50.0% | |
| AGTGGAGCTGTGTGGGATAT+TGG | - | chr1_2:5277555-5277574 | Msa0051180:intron | 50.0% | |
| GTGGAGCTGTGTGGGATATT+GGG | - | chr1_2:5277556-5277575 | Msa0051180:intron | 50.0% | |
| GGTACTGTTTACTTCGTGGG+CGG | - | chr1_2:5277594-5277613 | Msa0051180:intron | 50.0% | |
| TGTTTACTTCGTGGGCGGTT+GGG | - | chr1_2:5277599-5277618 | Msa0051180:intron | 50.0% | |
| AACTGAAGAAGGGGGTAGCA+AGG | - | chr1_2:5277773-5277792 | Msa0051180:intron | 50.0% | |
| !! | TCTAATGGTGGCGTTGACTG+TGG | - | chr1_2:5277837-5277856 | Msa0051180:intron | 50.0% |
| !! | CACCTGAGAGATTTCGGGTT+CGG | - | chr1_2:5277862-5277881 | Msa0051180:intron | 50.0% |
| GTAGATGGGGAGTTCCTTAG+GGG | + | chr1_2:5277973-5277992 | None:intergenic | 50.0% | |
| ! | CTTTGGCCGGTTGGTTGTTT+GGG | + | chr1_2:5277999-5278018 | None:intergenic | 50.0% |
| ! | TAGCTGGCTTCTTGGTCCTT+TGG | + | chr1_2:5278016-5278035 | None:intergenic | 50.0% |
| GTCTTCCTCGCTTCTTAGTC+TGG | + | chr1_2:5278055-5278074 | None:intergenic | 50.0% | |
| !! | GTGAGGGAGCACTTGATTTG+AGG | - | chr1_2:5278096-5278115 | Msa0051180:intron | 50.0% |
| GACATAGGCCTGAGTGACAA+AGG | - | chr1_2:5278660-5278679 | Msa0051180:intron | 50.0% | |
| AGCATTGCTCTTTGGGCTGT+AGG | - | chr1_2:5278866-5278885 | Msa0051180:CDS | 50.0% | |
| GCATTGCTCTTTGGGCTGTA+GGG | - | chr1_2:5278867-5278886 | Msa0051180:CDS | 50.0% | |
| CGCGTTCCATTTGCAATTCC+CGG | - | chr1_2:5278910-5278929 | Msa0051180:CDS | 50.0% | |
| TGTCGATGGTCCACGTATTC+TGG | - | chr1_2:5279196-5279215 | Msa0051180:CDS | 50.0% | |
| GTCACACTTTGTGTGGAGGA+TGG | - | chr1_2:5279909-5279928 | Msa0051180:intron | 50.0% | |
| ! | ATTACGTGTCCGTGTTGCTG+AGG | - | chr1_2:5280003-5280022 | Msa0051180:intron | 50.0% |
| ! | GCTAGTCTCCGAGGTTCAAA+AGG | - | chr1_2:5280039-5280058 | Msa0051180:intron | 50.0% |
| !! | GCCATTTTCAACCGTCCCGA+GGG | - | chr1_2:5277292-5277311 | Msa0051180:intron | 55.0% |
| ! | CCATTTTCAACCGTCCCGAG+GGG | - | chr1_2:5277293-5277312 | Msa0051180:intron | 55.0% |
| AGGTTCAAATCCCCTCGGGA+CGG | + | chr1_2:5277306-5277325 | None:intergenic | 55.0% | |
| AAGGTCCTAGTGGAGCTGTG+TGG | - | chr1_2:5277547-5277566 | Msa0051180:intron | 55.0% | |
| AGGTCCTAGTGGAGCTGTGT+GGG | - | chr1_2:5277548-5277567 | Msa0051180:intron | 55.0% | |
| CTGTTTACTTCGTGGGCGGT+TGG | - | chr1_2:5277598-5277617 | Msa0051180:intron | 55.0% | |
| ! | CCTTTGGCCGGTTGGTTGTT+TGG | + | chr1_2:5278000-5278019 | None:intergenic | 55.0% |
| CCAAACAACCAACCGGCCAA+AGG | - | chr1_2:5277997-5278016 | Msa0051180:intron | 55.0% | |
| TTCTTGGTCCTTTGGCCGGT+TGG | + | chr1_2:5278008-5278027 | None:intergenic | 55.0% | |
| TGGCTTCTTGGTCCTTTGGC+CGG | + | chr1_2:5278012-5278031 | None:intergenic | 55.0% | |
| CGAGGAAGACCGCCAAAAGA+AGG | - | chr1_2:5278065-5278084 | Msa0051180:intron | 55.0% | |
| ATGAGGTGGGAGTTGTGGAG+AGG | - | chr1_2:5278778-5278797 | Msa0051180:CDS | 55.0% | |
| TGGGAGTTGTGGAGAGGAAG+AGG | - | chr1_2:5278784-5278803 | Msa0051180:CDS | 55.0% | |
| GGGAGTTGTGGAGAGGAAGA+GGG | - | chr1_2:5278785-5278804 | Msa0051180:CDS | 55.0% | |
| GCCGTTTGGAAGATGCGCTA+TGG | + | chr1_2:5279810-5279829 | None:intergenic | 55.0% | |
| CTTCGTCGACCTCAGCAACA+CGG | + | chr1_2:5280015-5280034 | None:intergenic | 55.0% | |
| GTTGCTGAGGTCGACGAAGA+CGG | - | chr1_2:5280016-5280035 | Msa0051180:intron | 55.0% | |
| TTGCTGAGGTCGACGAAGAC+GGG | - | chr1_2:5280017-5280036 | Msa0051180:intron | 55.0% | |
| !! | GGCCATTTTCAACCGTCCCG+AGG | - | chr1_2:5277291-5277310 | Msa0051180:intron | 60.0% |
| CCCCTCGGGACGGTTGAAAA+TGG | + | chr1_2:5277296-5277315 | None:intergenic | 60.0% | |
| CGCCGAACCCGAAATCTCTC+AGG | + | chr1_2:5277867-5277886 | None:intergenic | 60.0% | |
| CCTCGCTTCTTAGTCTGGCC+AGG | + | chr1_2:5278050-5278069 | None:intergenic | 60.0% | |
| CCTGGCCAGACTAAGAAGCG+AGG | - | chr1_2:5278047-5278066 | Msa0051180:intron | 60.0% | |
| !! | TGGAGAGGAAGAGGGCATCG+AGG | - | chr1_2:5278793-5278812 | Msa0051180:CDS | 60.0% |
| CCTTGACTGTGCTGCCTCTG+TGG | + | chr1_2:5279090-5279109 | None:intergenic | 60.0% | |
| CCACAGAGGCAGCACAGTCA+AGG | - | chr1_2:5279087-5279106 | Msa0051180:CDS | 60.0% | |
| !! | CGAAGACGGGCTAGTCTCCG+AGG | - | chr1_2:5280030-5280049 | Msa0051180:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 5276472 | 5280378 | 5276472 | ID=Msa0051180;Name=Msa0051180 |
| chr1_2 | mRNA | 5276472 | 5280378 | 5276472 | ID=Msa0051180-mRNA-1;Parent=Msa0051180;Name=Msa0051180-mRNA-1;_AED=0.38;_eAED=0.38;_QI=213|1|1|1|1|1|4|279|400 |
| chr1_2 | exon | 5276472 | 5277062 | 5276472 | ID=Msa0051180-mRNA-1:exon:1596;Parent=Msa0051180-mRNA-1 |
| chr1_2 | exon | 5277633 | 5277757 | 5277633 | ID=Msa0051180-mRNA-1:exon:1595;Parent=Msa0051180-mRNA-1 |
| chr1_2 | exon | 5278710 | 5279364 | 5278710 | ID=Msa0051180-mRNA-1:exon:1594;Parent=Msa0051180-mRNA-1 |
| chr1_2 | exon | 5280055 | 5280378 | 5280055 | ID=Msa0051180-mRNA-1:exon:1593;Parent=Msa0051180-mRNA-1 |
| chr1_2 | five_prime_UTR | 5280166 | 5280378 | 5280166 | ID=Msa0051180-mRNA-1:five_prime_utr;Parent=Msa0051180-mRNA-1 |
| chr1_2 | CDS | 5280055 | 5280165 | 5280055 | ID=Msa0051180-mRNA-1:cds;Parent=Msa0051180-mRNA-1 |
| chr1_2 | CDS | 5278710 | 5279364 | 5278710 | ID=Msa0051180-mRNA-1:cds;Parent=Msa0051180-mRNA-1 |
| chr1_2 | CDS | 5277633 | 5277757 | 5277633 | ID=Msa0051180-mRNA-1:cds;Parent=Msa0051180-mRNA-1 |
| chr1_2 | CDS | 5276751 | 5277062 | 5276751 | ID=Msa0051180-mRNA-1:cds;Parent=Msa0051180-mRNA-1 |
| chr1_2 | three_prime_UTR | 5276472 | 5276750 | 5276472 | ID=Msa0051180-mRNA-1:three_prime_utr;Parent=Msa0051180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
