Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145460 | XP_039688823.1 | 96.222 | 397 | 15 | 0 | 4 | 400 | 11 | 407 | 0.0 | 795 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145460 | sp|Q8RYD1|REM16_ARATH | 32.597 | 362 | 173 | 10 | 9 | 366 | 11 | 305 | 1.94e-47 | 168 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145460 | G7I578 | 95.750 | 400 | 16 | 1 | 1 | 400 | 1 | 399 | 0.0 | 794 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0145460 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002390 | Msa0145460 | 0.865727 | 4.788328e-65 | -8.615850e-47 |
| Msa0051180 | Msa0145460 | 0.882680 | 8.499854e-71 | -8.615850e-47 |
| Msa0051280 | Msa0145460 | 0.911684 | 4.599425e-83 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145460 | MtrunA17_Chr1g0154211 | 95.750 | 400 | 16 | 1 | 1 | 400 | 1 | 399 | 0.0 | 794 |
| Msa0145460 | MtrunA17_Chr1g0154111 | 67.105 | 380 | 98 | 5 | 6 | 382 | 9 | 364 | 6.67e-175 | 501 |
| Msa0145460 | MtrunA17_Chr1g0154111 | 56.710 | 231 | 60 | 6 | 38 | 255 | 368 | 571 | 1.35e-68 | 227 |
| Msa0145460 | MtrunA17_Chr1g0154101 | 58.352 | 449 | 116 | 6 | 7 | 388 | 168 | 612 | 4.28e-170 | 497 |
| Msa0145460 | MtrunA17_Chr1g0154101 | 75.776 | 161 | 39 | 0 | 6 | 166 | 8 | 168 | 6.86e-80 | 262 |
| Msa0145460 | MtrunA17_Chr1g0154101 | 32.041 | 387 | 202 | 11 | 20 | 397 | 503 | 837 | 1.83e-41 | 155 |
| Msa0145460 | MtrunA17_Chr1g0154131 | 64.533 | 375 | 62 | 7 | 7 | 380 | 168 | 472 | 5.47e-160 | 458 |
| Msa0145460 | MtrunA17_Chr1g0154131 | 76.398 | 161 | 37 | 1 | 6 | 166 | 9 | 168 | 2.92e-80 | 254 |
| Msa0145460 | MtrunA17_Chr1g0154171 | 60.202 | 397 | 114 | 5 | 1 | 396 | 1 | 354 | 8.11e-157 | 446 |
| Msa0145460 | MtrunA17_Chr1g0154191 | 55.473 | 402 | 127 | 4 | 6 | 396 | 5 | 365 | 5.68e-149 | 426 |
| Msa0145460 | MtrunA17_Chr1g0154071 | 56.417 | 374 | 136 | 7 | 11 | 383 | 145 | 492 | 1.01e-134 | 395 |
| Msa0145460 | MtrunA17_Chr1g0154071 | 74.265 | 136 | 34 | 1 | 3 | 138 | 8 | 142 | 6.88e-63 | 209 |
| Msa0145460 | MtrunA17_Chr1g0154151 | 53.867 | 362 | 106 | 8 | 38 | 395 | 19 | 323 | 7.59e-120 | 351 |
| Msa0145460 | MtrunA17_Chr1g0154241 | 67.578 | 256 | 73 | 5 | 6 | 255 | 5 | 256 | 6.24e-115 | 336 |
| Msa0145460 | MtrunA17_Chr1g0154251 | 50.256 | 390 | 156 | 11 | 6 | 363 | 10 | 393 | 9.61e-112 | 337 |
| Msa0145460 | MtrunA17_Chr1g0154161 | 90.511 | 137 | 13 | 0 | 4 | 140 | 11 | 147 | 5.69e-86 | 264 |
| Msa0145460 | MtrunA17_Chr1g0154161 | 49.029 | 206 | 95 | 2 | 192 | 396 | 122 | 318 | 4.98e-55 | 184 |
| Msa0145460 | MtrunA17_Chr1g0154041 | 41.979 | 374 | 183 | 8 | 22 | 388 | 15 | 361 | 1.63e-81 | 261 |
| Msa0145460 | MtrunA17_Chr1g0154041 | 31.606 | 386 | 207 | 12 | 20 | 396 | 252 | 589 | 3.87e-39 | 147 |
| Msa0145460 | MtrunA17_Chr1g0154121 | 62.366 | 93 | 33 | 1 | 305 | 395 | 1 | 93 | 5.00e-35 | 124 |
| Msa0145460 | MtrunA17_Chr6g0464121 | 56.000 | 75 | 32 | 1 | 309 | 382 | 122 | 196 | 1.28e-21 | 94.7 |
| Msa0145460 | MtrunA17_Chr7g0233571 | 37.755 | 98 | 61 | 0 | 16 | 113 | 3 | 100 | 7.50e-16 | 76.3 |
| Msa0145460 | MtrunA17_Chr3g0131891 | 35.484 | 93 | 60 | 0 | 21 | 113 | 17 | 109 | 3.74e-15 | 75.9 |
| Msa0145460 | MtrunA17_Chr7g0233561 | 36.957 | 92 | 58 | 0 | 21 | 112 | 16 | 107 | 6.44e-15 | 75.1 |
| Msa0145460 | MtrunA17_Chr7g0233531 | 40.000 | 75 | 45 | 0 | 39 | 113 | 2 | 76 | 2.46e-13 | 70.1 |
| Msa0145460 | MtrunA17_Chr5g0419201 | 36.264 | 91 | 58 | 0 | 23 | 113 | 16 | 106 | 1.82e-12 | 65.9 |
| Msa0145460 | MtrunA17_Chr7g0233541 | 37.975 | 79 | 49 | 0 | 39 | 117 | 2 | 80 | 2.15e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145460 | AT4G33280.3 | 33.158 | 380 | 208 | 11 | 9 | 366 | 11 | 366 | 3.65e-50 | 174 |
| Msa0145460 | AT4G33280.1 | 32.597 | 362 | 173 | 10 | 9 | 366 | 11 | 305 | 1.98e-48 | 168 |
| Msa0145460 | AT4G33280.2 | 55.385 | 130 | 55 | 2 | 9 | 137 | 11 | 138 | 7.22e-45 | 157 |
| Msa0145460 | AT3G18990.2 | 24.810 | 395 | 230 | 10 | 23 | 399 | 6 | 351 | 3.63e-22 | 97.4 |
| Msa0145460 | AT3G18990.1 | 25.000 | 380 | 216 | 8 | 23 | 379 | 6 | 339 | 4.20e-22 | 96.7 |
| Msa0145460 | AT4G34400.2 | 35.644 | 101 | 61 | 2 | 23 | 122 | 17 | 114 | 1.23e-16 | 81.6 |
| Msa0145460 | AT4G34400.1 | 35.644 | 101 | 61 | 2 | 23 | 122 | 17 | 114 | 1.23e-16 | 81.6 |
| Msa0145460 | AT3G06220.1 | 30.233 | 129 | 80 | 4 | 23 | 151 | 11 | 129 | 1.88e-14 | 71.6 |
| Msa0145460 | AT3G06160.5 | 26.512 | 215 | 133 | 7 | 23 | 236 | 11 | 201 | 1.00e-13 | 72.0 |
| Msa0145460 | AT3G06160.4 | 26.512 | 215 | 133 | 7 | 23 | 236 | 11 | 201 | 1.00e-13 | 72.0 |
| Msa0145460 | AT3G06160.3 | 26.512 | 215 | 133 | 7 | 23 | 236 | 11 | 201 | 1.00e-13 | 72.0 |
| Msa0145460 | AT3G06160.1 | 26.512 | 215 | 133 | 7 | 23 | 236 | 26 | 216 | 1.06e-13 | 72.0 |
| Msa0145460 | AT3G06160.2 | 26.512 | 215 | 133 | 7 | 23 | 236 | 70 | 260 | 1.52e-13 | 72.0 |
| Msa0145460 | AT3G53310.1 | 35.165 | 91 | 57 | 1 | 23 | 113 | 12 | 100 | 6.65e-12 | 66.2 |
| Msa0145460 | AT5G60130.5 | 38.462 | 91 | 51 | 2 | 35 | 120 | 25 | 115 | 1.41e-11 | 64.7 |
| Msa0145460 | AT5G60130.3 | 39.326 | 89 | 49 | 2 | 37 | 120 | 1 | 89 | 2.18e-11 | 64.7 |
| Msa0145460 | AT5G66980.1 | 40.244 | 82 | 45 | 1 | 35 | 112 | 21 | 102 | 2.39e-11 | 65.1 |
| Msa0145460 | AT5G60130.2 | 39.326 | 89 | 49 | 2 | 37 | 120 | 27 | 115 | 2.84e-11 | 64.3 |
| Msa0145460 | AT5G60130.4 | 39.326 | 89 | 49 | 2 | 37 | 120 | 24 | 112 | 3.12e-11 | 64.7 |
| Msa0145460 | AT5G60140.1 | 32.727 | 110 | 69 | 2 | 14 | 120 | 7 | 114 | 3.16e-11 | 64.7 |
| Msa0145460 | AT5G60130.1 | 39.326 | 89 | 49 | 2 | 37 | 120 | 27 | 115 | 3.18e-11 | 64.7 |
Find 114 sgRNAs with CRISPR-Local
Find 256 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTCCAAGCTTTATGTTAT+TGG | 0.166151 | 1_4:-5146495 | None:intergenic |
| TCTTCCTCGTGAACCGTTAA+AGG | 0.176194 | 1_4:+5143088 | Msa0145460:five_prime_UTR |
| CAGCTCCACTAGGACCTTTA+AGG | 0.180866 | 1_4:-5144058 | None:intergenic |
| CCAGAAAATGTGACCCTTAA+AGG | 0.236805 | 1_4:+5144044 | Msa0145460:CDS |
| AACTTCATTAGCTGGCTTCT+TGG | 0.255515 | 1_4:-5144537 | None:intergenic |
| CCTTTGGCCGGTTGGTTGTT+TGG | 0.258620 | 1_4:-5144513 | None:intergenic |
| GAAAGTATTGATCATCAAAA+TGG | 0.270213 | 1_4:+5146608 | Msa0145460:CDS |
| TACAAGTTGTTGTTGAAAAT+TGG | 0.275640 | 1_4:-5143292 | None:intergenic |
| TGGTTGTTTGGGAAAGTAGA+TGG | 0.276616 | 1_4:-5144501 | None:intergenic |
| CTTTGGCCGGTTGGTTGTTT+GGG | 0.281327 | 1_4:-5144512 | None:intergenic |
| TCACGAGAATTACCTTCTTT+TGG | 0.284057 | 1_4:-5144593 | None:intergenic |
| TGGTTCACCTGAGAGATTTC+GGG | 0.291973 | 1_4:+5144373 | Msa0145460:CDS |
| CTCTCTGCTTCTGTTTGAAA+TGG | 0.300695 | 1_4:+5143182 | Msa0145460:exon |
| AGTGGAGCTGTGTGGGATAT+TGG | 0.305311 | 1_4:+5144071 | Msa0145460:CDS |
| GTGGTTCACCTGAGAGATTT+CGG | 0.308902 | 1_4:+5144372 | Msa0145460:CDS |
| TGTCGATGGTCCACGTATTC+TGG | 0.310730 | 1_4:+5145743 | Msa0145460:CDS |
| AAGTAGATGGGGAGTTCCTT+AGG | 0.312746 | 1_4:-5144488 | None:intergenic |
| CTTGGGAAGAAGATATTTAC+TGG | 0.326346 | 1_4:+5143223 | Msa0145460:CDS |
| TTAGTGATGATACAGCTAAT+TGG | 0.326516 | 1_4:-5146787 | None:intergenic |
| GTCTTCCTCGCTTCTTAGTC+TGG | 0.344493 | 1_4:-5144568 | None:intergenic |
| TAGCTGGCTTCTTGGTCCTT+TGG | 0.354794 | 1_4:-5144529 | None:intergenic |
| CACCTGAGAGATTTCGGGTT+CGG | 0.376625 | 1_4:+5144378 | Msa0145460:CDS |
| CTTGTATGCACTCTACTTCT+AGG | 0.379008 | 1_4:-5146434 | None:intergenic |
| GTGGAGCTGTGTGGGATATT+GGG | 0.390357 | 1_4:+5144072 | Msa0145460:CDS |
| CAAGAATGTTAGCAAGTAGA+TGG | 0.391596 | 1_4:-5146669 | None:intergenic |
| ATAATCTTTATCTTGCCGTT+TGG | 0.397078 | 1_4:-5146368 | None:intergenic |
| TAGTGATGATACAGCTAATT+GGG | 0.397772 | 1_4:-5146786 | None:intergenic |
| GTGAGGGAGCACTTGATTTG+AGG | 0.403845 | 1_4:+5144612 | Msa0145460:CDS |
| CTTCCTCGTGAACCGTTAAA+GGG | 0.406379 | 1_4:+5143089 | Msa0145460:five_prime_UTR |
| TGTTTACTTCGTGGGCGGTT+GGG | 0.420992 | 1_4:+5144115 | Msa0145460:CDS |
| TGAGGGAGCACTTGATTTGA+GGG | 0.422320 | 1_4:+5144613 | Msa0145460:CDS |
| TAGGGCTTTAAACCCTTTAA+CGG | 0.424192 | 1_4:-5143101 | None:intergenic |
| CTGTTTACTTCGTGGGCGGT+TGG | 0.428777 | 1_4:+5144114 | Msa0145460:CDS |
| TTCTTGGTCCTTTGGCCGGT+TGG | 0.434930 | 1_4:-5144521 | None:intergenic |
| CTGTTTGAAATGGAAGTAGA+TGG | 0.435371 | 1_4:+5143192 | Msa0145460:exon |
| GGTTGTTTGGGAAAGTAGAT+GGG | 0.439627 | 1_4:-5144500 | None:intergenic |
| TGGCTTCTTGGTCCTTTGGC+CGG | 0.440342 | 1_4:-5144525 | None:intergenic |
| AAGTAGATGGAAGCAGATCT+TGG | 0.447214 | 1_4:+5143205 | Msa0145460:CDS |
| CCTCGCTTCTTAGTCTGGCC+AGG | 0.449815 | 1_4:-5144563 | None:intergenic |
| AGTAGATGGGGAGTTCCTTA+GGG | 0.454636 | 1_4:-5144487 | None:intergenic |
| CCAGGTGTAACTTCATTAGC+TGG | 0.461198 | 1_4:-5144545 | None:intergenic |
| GATGCGCTATGGAAAATTGA+TGG | 0.463928 | 1_4:-5146343 | None:intergenic |
| AGCTCCACTAGGACCTTTAA+GGG | 0.472647 | 1_4:-5144057 | None:intergenic |
| CGCCGAACCCGAAATCTCTC+AGG | 0.473424 | 1_4:-5144380 | None:intergenic |
| AAAGTATTGATCATCAAAAT+GGG | 0.485102 | 1_4:+5146609 | Msa0145460:CDS |
| GAAGTCAATACTGCTTCTAA+TGG | 0.487691 | 1_4:+5144338 | Msa0145460:CDS |
| GATGGTACTGTTTACTTCGT+GGG | 0.490529 | 1_4:+5144107 | Msa0145460:CDS |
| TACTTTCCCAAACAACCAAC+CGG | 0.491088 | 1_4:+5144506 | Msa0145460:CDS |
| CAACGGTGAATCTCTCTTTG+AGG | 0.491919 | 1_4:+5144193 | Msa0145460:CDS |
| GATTATTCTTCGTAATTTGA+AGG | 0.492590 | 1_4:+5146385 | Msa0145460:CDS |
| TCCATAGCGCATCTTCCAAA+CGG | 0.492621 | 1_4:+5146353 | Msa0145460:CDS |
| CGAGGAAGACCGCCAAAAGA+AGG | 0.494591 | 1_4:+5144581 | Msa0145460:CDS |
| AAGAACACAAACACATCTGT+TGG | 0.496016 | 1_4:+5144314 | Msa0145460:CDS |
| GCTAGTCTCCGAGGTTCAAA+AGG | 0.500197 | 1_4:+5146586 | Msa0145460:CDS |
| TTGCTGAGGTCGACGAAGAC+GGG | 0.500559 | 1_4:+5146564 | Msa0145460:CDS |
| GGACATGCTCAAACTGAAGA+AGG | 0.510328 | 1_4:+5144278 | Msa0145460:CDS |
| ATTATTCTTCGTAATTTGAA+GGG | 0.513122 | 1_4:+5146386 | Msa0145460:CDS |
| GTTGCTGAGGTCGACGAAGA+CGG | 0.514090 | 1_4:+5146563 | Msa0145460:CDS |
| AGTAGATGGAAGCAGATCTT+GGG | 0.514632 | 1_4:+5143206 | Msa0145460:CDS |
| AACAAAATATGGAAAAGTTG+AGG | 0.516177 | 1_4:-5145700 | None:intergenic |
| TATTGAATCTGCTTCCCCTA+AGG | 0.518194 | 1_4:+5144472 | Msa0145460:CDS |
| GAAAAGTTGAGGTAAATGAC+TGG | 0.520804 | 1_4:-5145689 | None:intergenic |
| AACAGAAGCAGAGAGTGAAA+TGG | 0.524263 | 1_4:-5143174 | None:intergenic |
| CACCGTTGTACTTAAAGACA+AGG | 0.534444 | 1_4:-5144178 | None:intergenic |
| ATGCGCTATGGAAAATTGAT+GGG | 0.534562 | 1_4:-5146342 | None:intergenic |
| TCCGTAGGCTCGTGAACTGT+TGG | 0.536321 | 1_4:+5146903 | Msa0145460:three_prime_UTR |
| AGATGGTACTGTTTACTTCG+TGG | 0.536376 | 1_4:+5144106 | Msa0145460:CDS |
| CGTGCCAATAACATAAAGCT+TGG | 0.537860 | 1_4:+5146491 | Msa0145460:CDS |
| GACATGCTCAAACTGAAGAA+GGG | 0.539180 | 1_4:+5144279 | Msa0145460:CDS |
| GCTTCTAACAAGGAACTCTC+AGG | 0.540714 | 1_4:+5144635 | Msa0145460:CDS |
| ATCAAAACATTCAATGTCGA+TGG | 0.543207 | 1_4:+5145729 | Msa0145460:CDS |
| GCCGTTTGGAAGATGCGCTA+TGG | 0.543496 | 1_4:-5146354 | None:intergenic |
| CCAGCTAATGAAGTTACACC+TGG | 0.556435 | 1_4:+5144545 | Msa0145460:CDS |
| ACAGCTAATTGGGGTGTGAA+TGG | 0.556813 | 1_4:-5146776 | None:intergenic |
| TTCCTTGTCTTTAAGTACAA+CGG | 0.557608 | 1_4:+5144176 | Msa0145460:CDS |
| TGGAGTTAGTTTCTGTGAGA+AGG | 0.558125 | 1_4:+5144229 | Msa0145460:CDS |
| CATGAATTATGATGATACAT+TGG | 0.565560 | 1_4:-5146716 | None:intergenic |
| ACCAACAGTTCACGAGCCTA+CGG | 0.567318 | 1_4:-5146904 | None:intergenic |
| AGGTCCTAGTGGAGCTGTGT+GGG | 0.568073 | 1_4:+5144064 | Msa0145460:CDS |
| TGATTTGAGGGCTTCTAACA+AGG | 0.574575 | 1_4:+5144625 | Msa0145460:CDS |
| CCAAACAACCAACCGGCCAA+AGG | 0.585015 | 1_4:+5144513 | Msa0145460:CDS |
| ATATCCCACACAGCTCCACT+AGG | 0.588180 | 1_4:-5144068 | None:intergenic |
| GTTGTTTGGGAAAGTAGATG+GGG | 0.591431 | 1_4:-5144499 | None:intergenic |
| CGGTTCACGAGGAAGATGAA+TGG | 0.593697 | 1_4:-5143081 | None:intergenic |
| GTCAATACTGCTTCTAATGG+TGG | 0.601970 | 1_4:+5144341 | Msa0145460:CDS |
| CATACAAGTCACACTTTGTG+TGG | 0.602821 | 1_4:+5146449 | Msa0145460:CDS |
| TCTAATGGTGGCGTTGACTG+TGG | 0.604326 | 1_4:+5144353 | Msa0145460:CDS |
| GTCAAGGTTATCGTCAGCAA+AGG | 0.607838 | 1_4:+5145650 | Msa0145460:CDS |
| AAGTTGTTGTTGAAAATTGG+TGG | 0.610802 | 1_4:-5143289 | None:intergenic |
| GTCACACTTTGTGTGGAGGA+TGG | 0.614641 | 1_4:+5146456 | Msa0145460:CDS |
| AGTCTGTCATAGGTCAACCT+AGG | 0.615410 | 1_4:-5142988 | None:intergenic |
| AAAAGTTGAGGTAAATGACT+GGG | 0.616205 | 1_4:-5145688 | None:intergenic |
| AAGGTCCTAGTGGAGCTGTG+TGG | 0.617527 | 1_4:+5144063 | Msa0145460:CDS |
| ATTACGTGTCCGTGTTGCTG+AGG | 0.620142 | 1_4:+5146550 | Msa0145460:CDS |
| ACATGCTCAAACTGAAGAAG+GGG | 0.624407 | 1_4:+5144280 | Msa0145460:CDS |
| AAAAGAAGGTAATTCTCGTG+AGG | 0.624894 | 1_4:+5144595 | Msa0145460:CDS |
| GTGACCCTTAAAGGTCCTAG+TGG | 0.630968 | 1_4:+5144053 | Msa0145460:CDS |
| GAACAACTCACCAGAATACG+TGG | 0.631909 | 1_4:-5145753 | None:intergenic |
| AAAGAAGGTAATTCTCGTGA+GGG | 0.632567 | 1_4:+5144596 | Msa0145460:CDS |
| TTCACGAGGAAGATGAATGG+TGG | 0.634155 | 1_4:-5143078 | None:intergenic |
| CCACAGAGGCAGCACAGTCA+AGG | 0.637815 | 1_4:+5145634 | Msa0145460:intron |
| ATTGGGTTGACAACTAGAGA+TGG | 0.647577 | 1_4:+5144089 | Msa0145460:CDS |
| GTAATTTGAAGGGAGAACAG+TGG | 0.655181 | 1_4:+5146396 | Msa0145460:CDS |
| AAACCCTTTAACGGTTCACG+AGG | 0.657561 | 1_4:-5143092 | None:intergenic |
| AGTGATGATACAGCTAATTG+GGG | 0.658407 | 1_4:-5146785 | None:intergenic |
| GGTACTGTTTACTTCGTGGG+CGG | 0.659429 | 1_4:+5144110 | Msa0145460:CDS |
| TTGTCTATATAACATTCCGT+AGG | 0.662376 | 1_4:+5146888 | Msa0145460:three_prime_UTR |
| CTTCGTCGACCTCAGCAACA+CGG | 0.662749 | 1_4:-5146559 | None:intergenic |
| CGAAGACGGGCTAGTCTCCG+AGG | 0.666474 | 1_4:+5146577 | Msa0145460:CDS |
| TGCGCTATGGAAAATTGATG+GGG | 0.667850 | 1_4:-5146341 | None:intergenic |
| ACAAGTCACACTTTGTGTGG+AGG | 0.672770 | 1_4:+5146452 | Msa0145460:CDS |
| GTAGATGGGGAGTTCCTTAG+GGG | 0.675019 | 1_4:-5144486 | None:intergenic |
| CATGCTCAAACTGAAGAAGG+GGG | 0.720080 | 1_4:+5144281 | Msa0145460:CDS |
| CCTGGCCAGACTAAGAAGCG+AGG | 0.722966 | 1_4:+5144563 | Msa0145460:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAATGTAGTAAAATTTAA+TGG | - | chr1_4:5144681-5144700 | None:intergenic | 10.0% |
| !!! | TTGATTATTTTAACAAAATA+TGG | - | chr1_4:5145714-5145733 | None:intergenic | 10.0% |
| !! | ACAAAAATTAAACCTTTATA+AGG | + | chr1_4:5143360-5143379 | Msa0145460:intron | 15.0% |
| !! | AGATACAAAATTTAAAAGAT+GGG | - | chr1_4:5143428-5143447 | None:intergenic | 15.0% |
| !! | AAGATACAAAATTTAAAAGA+TGG | - | chr1_4:5143429-5143448 | None:intergenic | 15.0% |
| !! | TATACTATATGTTCAAAATA+TGG | - | chr1_4:5143541-5143560 | None:intergenic | 15.0% |
| !!! | ATTAATTATGTTTAGCTTTT+AGG | + | chr1_4:5143693-5143712 | Msa0145460:intron | 15.0% |
| !!! | ACTTTTCAAAAACAAAATTA+AGG | + | chr1_4:5143768-5143787 | Msa0145460:intron | 15.0% |
| !!! | CTTTTCAAAAACAAAATTAA+GGG | + | chr1_4:5143769-5143788 | Msa0145460:intron | 15.0% |
| !!! | TTTTCAAAAACAAAATTAAG+GGG | + | chr1_4:5143770-5143789 | Msa0145460:intron | 15.0% |
| !! | GAAGTTTATATATAATGTAT+TGG | + | chr1_4:5145109-5145128 | Msa0145460:intron | 15.0% |
| !!! | AATCATGAGTTTAAAATAAA+AGG | - | chr1_4:5145601-5145620 | None:intergenic | 15.0% |
| !! | AAAAAACTAACAATTACAAT+TGG | - | chr1_4:5146182-5146201 | None:intergenic | 15.0% |
| !! | AAAAAGAGAAAAAGAATGAA+GGG | - | chr1_4:5143324-5143343 | None:intergenic | 20.0% |
| !! | TAAAAAGAGAAAAAGAATGA+AGG | - | chr1_4:5143325-5143344 | None:intergenic | 20.0% |
| !!! | TTAATTTTTGTTAACATGGA+AGG | - | chr1_4:5143351-5143370 | None:intergenic | 20.0% |
| !!! | AGGTTTAATTTTTGTTAACA+TGG | - | chr1_4:5143355-5143374 | None:intergenic | 20.0% |
| !!! | TTTATAAGGTTTTCATACTT+GGG | + | chr1_4:5143374-5143393 | Msa0145460:intron | 20.0% |
| !!! | ATATGCTTGTTTTTACATAA+TGG | + | chr1_4:5143568-5143587 | Msa0145460:intron | 20.0% |
| !! | TTTCAAAAACAAAATTAAGG+GGG | + | chr1_4:5143771-5143790 | Msa0145460:intron | 20.0% |
| !! | TCAAGCAAATTATTATCTTT+AGG | + | chr1_4:5143924-5143943 | Msa0145460:intron | 20.0% |
| !!! | AAATTGTCTGAAAATGTTTT+AGG | - | chr1_4:5144011-5144030 | None:intergenic | 20.0% |
| !!! | TCTTATTTTGTTAGAAAATG+TGG | + | chr1_4:5144257-5144276 | Msa0145460:CDS | 20.0% |
| !! | ACAAATTTGACAAAAAAAAC+TGG | - | chr1_4:5145031-5145050 | None:intergenic | 20.0% |
| !! | TAAAATAAAAGGATAATCTC+TGG | - | chr1_4:5145590-5145609 | None:intergenic | 20.0% |
| !! | GTAAATTAAGAATCACAAAA+GGG | - | chr1_4:5145778-5145797 | None:intergenic | 20.0% |
| !! | GAGATAAAACAACATTATTT+GGG | - | chr1_4:5145803-5145822 | None:intergenic | 20.0% |
| !! | AGAGATAAAACAACATTATT+TGG | - | chr1_4:5145804-5145823 | None:intergenic | 20.0% |
| !!! | ACAGGAAATATTAACTTTTA+AGG | - | chr1_4:5146206-5146225 | None:intergenic | 20.0% |
| !! | ATTTCCTGTATTAAGTTTAT+TGG | + | chr1_4:5146217-5146236 | Msa0145460:intron | 20.0% |
| !! | ATTATTCTTCGTAATTTGAA+GGG | + | chr1_4:5146386-5146405 | Msa0145460:CDS | 20.0% |
| !!! | AAAGTATTGATCATCAAAAT+GGG | + | chr1_4:5146609-5146628 | Msa0145460:CDS | 20.0% |
| !!! | ATTCTTAGTATATGTTTTAG+AGG | + | chr1_4:5146750-5146769 | Msa0145460:three_prime_UTR | 20.0% |
| !!! | TTTTAAGAAATTGGGTGAAA+TGG | - | chr1_4:5143266-5143285 | None:intergenic | 25.0% |
| !! | TACAAGTTGTTGTTGAAAAT+TGG | - | chr1_4:5143295-5143314 | None:intergenic | 25.0% |
| ! | CAAGTATGAAAACCTTATAA+AGG | - | chr1_4:5143375-5143394 | None:intergenic | 25.0% |
| !! | CTTTATAAGGTTTTCATACT+TGG | + | chr1_4:5143373-5143392 | Msa0145460:intron | 25.0% |
| !!! | AGTTTTCAGCTTTTGATTAT+TGG | + | chr1_4:5143488-5143507 | Msa0145460:intron | 25.0% |
| !!! | TTGTTTTTACATAATGGCTT+AGG | + | chr1_4:5143574-5143593 | Msa0145460:intron | 25.0% |
| !!! | GGAAATTATATTTTAACTGC+AGG | + | chr1_4:5143980-5143999 | Msa0145460:intron | 25.0% |
| !!! | TTTGAGGTTTTAATCTTTGA+TGG | + | chr1_4:5144209-5144228 | Msa0145460:CDS | 25.0% |
| !!! | ATTTTATCAGTAGTTTTGAC+AGG | - | chr1_4:5144437-5144456 | None:intergenic | 25.0% |
| ! | GTTATAGATACTAAATAAGC+TGG | - | chr1_4:5144705-5144724 | None:intergenic | 25.0% |
| !!! | GTTTTTTCCCCTTTTTATAA+TGG | + | chr1_4:5144816-5144835 | Msa0145460:intron | 25.0% |
| !! | TTTAGGACCATTATAAAAAG+GGG | - | chr1_4:5144826-5144845 | None:intergenic | 25.0% |
| !!! | CTTTAGGACCATTATAAAAA+GGG | - | chr1_4:5144827-5144846 | None:intergenic | 25.0% |
| !!! | ACTTTAGGACCATTATAAAA+AGG | - | chr1_4:5144828-5144847 | None:intergenic | 25.0% |
| !! | TTTTTATAATGGTCCTAAAG+TGG | + | chr1_4:5144827-5144846 | Msa0145460:intron | 25.0% |
| !! | GTTTAGTATCGAATTAAGAT+AGG | - | chr1_4:5144882-5144901 | None:intergenic | 25.0% |
| ! | ACATCTAGTATGTATCTATT+TGG | + | chr1_4:5144920-5144939 | Msa0145460:intron | 25.0% |
| ! | AAAATTCATCATAGTGAATC+AGG | - | chr1_4:5144966-5144985 | None:intergenic | 25.0% |
| ! | ATTTGACAAAAAAAACTGGT+TGG | - | chr1_4:5145027-5145046 | None:intergenic | 25.0% |
| ! | TCAAATGACAAAAAGAAAAG+TGG | - | chr1_4:5145062-5145081 | None:intergenic | 25.0% |
| ! | AAAATGACATACTTTCTGAT+AGG | + | chr1_4:5145166-5145185 | Msa0145460:intron | 25.0% |
| ! | AACAAAATATGGAAAAGTTG+AGG | - | chr1_4:5145703-5145722 | None:intergenic | 25.0% |
| ! | GGTAAATTAAGAATCACAAA+AGG | - | chr1_4:5145779-5145798 | None:intergenic | 25.0% |
| ! | ATAAAACAACATTATTTGGG+AGG | - | chr1_4:5145800-5145819 | None:intergenic | 25.0% |
| ! | AAGTTACTTAAAGATAGAGA+CGG | - | chr1_4:5145827-5145846 | None:intergenic | 25.0% |
| ! | GATTATTCTTCGTAATTTGA+AGG | + | chr1_4:5146385-5146404 | Msa0145460:CDS | 25.0% |
| !!! | GAAAGTATTGATCATCAAAA+TGG | + | chr1_4:5146608-5146627 | Msa0145460:CDS | 25.0% |
| ! | CATGAATTATGATGATACAT+TGG | - | chr1_4:5146719-5146738 | None:intergenic | 25.0% |
| !! | CATTCATTTTAGTCTGTCAT+AGG | - | chr1_4:5143001-5143020 | None:intergenic | 30.0% |
| ! | AAAAAGGAAAGAAGGGTATA+GGG | - | chr1_4:5143122-5143141 | None:intergenic | 30.0% |
| !!! | TTTTGGTTTGAGGAAGAAAA+AGG | - | chr1_4:5143138-5143157 | None:intergenic | 30.0% |
| !!! | GGTGGTAGTTTTAAGAAATT+GGG | - | chr1_4:5143274-5143293 | None:intergenic | 30.0% |
| !!! | TGGTGGTAGTTTTAAGAAAT+TGG | - | chr1_4:5143275-5143294 | None:intergenic | 30.0% |
| ! | AAGTTGTTGTTGAAAATTGG+TGG | - | chr1_4:5143292-5143311 | None:intergenic | 30.0% |
| ATAGAACTAACTGCAGTTAA+AGG | - | chr1_4:5143461-5143480 | None:intergenic | 30.0% | |
| !! | TAAGGGGGAAATTTTGATAT+TGG | + | chr1_4:5143786-5143805 | Msa0145460:intron | 30.0% |
| ! | ACGTATCTTTTAATCTCAGA+TGG | + | chr1_4:5143959-5143978 | Msa0145460:intron | 30.0% |
| TTCCTTGTCTTTAAGTACAA+CGG | + | chr1_4:5144176-5144195 | Msa0145460:CDS | 30.0% | |
| TCTATAACTTTCTGATGTCA+TGG | + | chr1_4:5144717-5144736 | Msa0145460:intron | 30.0% | |
| AGATACTGATAAACCACTTT+AGG | - | chr1_4:5144843-5144862 | None:intergenic | 30.0% | |
| ATCAGTATCTAATGATACAC+AGG | + | chr1_4:5144853-5144872 | Msa0145460:intron | 30.0% | |
| TATGTCATCTGCTAAAGTTA+AGG | - | chr1_4:5145193-5145212 | None:intergenic | 30.0% | |
| TTAACTTTAGCAGATGACAT+AGG | + | chr1_4:5145192-5145211 | Msa0145460:intron | 30.0% | |
| ACATAAACTGCCTACAATTT+GGG | - | chr1_4:5145240-5145259 | None:intergenic | 30.0% | |
| !! | GGAAGAATCATTGTTTTGTT+TGG | + | chr1_4:5145361-5145380 | Msa0145460:intron | 30.0% |
| AAAAGTTGAGGTAAATGACT+GGG | - | chr1_4:5145691-5145710 | None:intergenic | 30.0% | |
| ATCAAAACATTCAATGTCGA+TGG | + | chr1_4:5145729-5145748 | Msa0145460:CDS | 30.0% | |
| ! | AGCATTTCTCCTTTTATGTA+TGG | + | chr1_4:5145890-5145909 | Msa0145460:intron | 30.0% |
| ! | ATTTCTCCTTTTATGTATGG+AGG | + | chr1_4:5145893-5145912 | Msa0145460:intron | 30.0% |
| ! | TCATTGAAATCGTCTTTTAC+TGG | - | chr1_4:5145959-5145978 | None:intergenic | 30.0% |
| ! | GATTGACTCATAAATTAGGA+TGG | - | chr1_4:5145999-5146018 | None:intergenic | 30.0% |
| ! | CCAAGATTGACTCATAAATT+AGG | - | chr1_4:5146003-5146022 | None:intergenic | 30.0% |
| CCTAATTTATGAGTCAATCT+TGG | + | chr1_4:5146000-5146019 | Msa0145460:intron | 30.0% | |
| CAATTACAATTGGTACTTCT+TGG | - | chr1_4:5146172-5146191 | None:intergenic | 30.0% | |
| ACGACCAATAAACTTAATAC+AGG | - | chr1_4:5146224-5146243 | None:intergenic | 30.0% | |
| ATAATCTTTATCTTGCCGTT+TGG | - | chr1_4:5146371-5146390 | None:intergenic | 30.0% | |
| ! | ATCTCCAAGCTTTATGTTAT+TGG | - | chr1_4:5146498-5146517 | None:intergenic | 30.0% |
| ! | AATACTTTCCTTTTGAACCT+CGG | - | chr1_4:5146597-5146616 | None:intergenic | 30.0% |
| TAGTGATGATACAGCTAATT+GGG | - | chr1_4:5146789-5146808 | None:intergenic | 30.0% | |
| TTAGTGATGATACAGCTAAT+TGG | - | chr1_4:5146790-5146809 | None:intergenic | 30.0% | |
| TTGTCTATATAACATTCCGT+AGG | + | chr1_4:5146888-5146907 | Msa0145460:three_prime_UTR | 30.0% | |
| !! | TAGGGCTTTAAACCCTTTAA+CGG | - | chr1_4:5143104-5143123 | None:intergenic | 35.0% |
| ! | GAAAAAGGAAAGAAGGGTAT+AGG | - | chr1_4:5143123-5143142 | None:intergenic | 35.0% |
| GAGGAAGAAAAAGGAAAGAA+GGG | - | chr1_4:5143129-5143148 | None:intergenic | 35.0% | |
| TGAGGAAGAAAAAGGAAAGA+AGG | - | chr1_4:5143130-5143149 | None:intergenic | 35.0% | |
| ! | GTTCAAAGTTGCAAGCTTTT+TGG | - | chr1_4:5143155-5143174 | None:intergenic | 35.0% |
| ! | CTGTTTGAAATGGAAGTAGA+TGG | + | chr1_4:5143192-5143211 | Msa0145460:exon | 35.0% |
| CTTGGGAAGAAGATATTTAC+TGG | + | chr1_4:5143223-5143242 | Msa0145460:CDS | 35.0% | |
| TTTATTATTCCTTTCCTGCC+TGG | + | chr1_4:5143716-5143735 | Msa0145460:intron | 35.0% | |
| GATTTGAACCTTGAAGATTG+AGG | + | chr1_4:5143831-5143850 | Msa0145460:intron | 35.0% | |
| TGTTGTAACCTCAATCTTCA+AGG | - | chr1_4:5143842-5143861 | None:intergenic | 35.0% | |
| ACATGATTCACATACACTTG+AGG | - | chr1_4:5143876-5143895 | None:intergenic | 35.0% | |
| AAGAACACAAACACATCTGT+TGG | + | chr1_4:5144314-5144333 | Msa0145460:CDS | 35.0% | |
| GAAGTCAATACTGCTTCTAA+TGG | + | chr1_4:5144338-5144357 | Msa0145460:CDS | 35.0% | |
| ! | TCACGAGAATTACCTTCTTT+TGG | - | chr1_4:5144596-5144615 | None:intergenic | 35.0% |
| AAAAGAAGGTAATTCTCGTG+AGG | + | chr1_4:5144595-5144614 | Msa0145460:CDS | 35.0% | |
| AAAGAAGGTAATTCTCGTGA+GGG | + | chr1_4:5144596-5144615 | Msa0145460:CDS | 35.0% | |
| ! | ACTAGTTTGTGCAATGAACA+TGG | - | chr1_4:5144798-5144817 | None:intergenic | 35.0% |
| ACTAGATGTTCGCATCAATT+GGG | - | chr1_4:5144909-5144928 | None:intergenic | 35.0% | |
| TACTAGATGTTCGCATCAAT+TGG | - | chr1_4:5144910-5144929 | None:intergenic | 35.0% | |
| CACATAAACTGCCTACAATT+TGG | - | chr1_4:5145241-5145260 | None:intergenic | 35.0% | |
| AATTGTAGGCAGTTTATGTG+AGG | + | chr1_4:5145241-5145260 | Msa0145460:intron | 35.0% | |
| AGTGAAAAGACACTATTCTC+TGG | - | chr1_4:5145387-5145406 | None:intergenic | 35.0% | |
| CGAGAAATTAAAGAGAAACC+GGG | - | chr1_4:5145478-5145497 | None:intergenic | 35.0% | |
| GCGAGAAATTAAAGAGAAAC+CGG | - | chr1_4:5145479-5145498 | None:intergenic | 35.0% | |
| TGAATTGTTCAATTCCACAG+AGG | + | chr1_4:5145620-5145639 | Msa0145460:intron | 35.0% | |
| GAAAAGTTGAGGTAAATGAC+TGG | - | chr1_4:5145692-5145711 | None:intergenic | 35.0% | |
| TACCATCCTCCATACATAAA+AGG | - | chr1_4:5145902-5145921 | None:intergenic | 35.0% | |
| AGTAGTTGAGAAGTTTGTCA+AGG | - | chr1_4:5146099-5146118 | None:intergenic | 35.0% | |
| TAATGCCAAGCACATTGAAT+GGG | - | chr1_4:5146269-5146288 | None:intergenic | 35.0% | |
| TTAATGCCAAGCACATTGAA+TGG | - | chr1_4:5146270-5146289 | None:intergenic | 35.0% | |
| ATGCGCTATGGAAAATTGAT+GGG | - | chr1_4:5146345-5146364 | None:intergenic | 35.0% | |
| CAAGAATGTTAGCAAGTAGA+TGG | - | chr1_4:5146672-5146691 | None:intergenic | 35.0% | |
| AGTGATGATACAGCTAATTG+GGG | - | chr1_4:5146788-5146807 | None:intergenic | 35.0% | |
| !!! | GTTGCAAGCTTTTTGGTTTG+AGG | - | chr1_4:5143148-5143167 | None:intergenic | 40.0% |
| AACAGAAGCAGAGAGTGAAA+TGG | - | chr1_4:5143177-5143196 | None:intergenic | 40.0% | |
| CTCTCTGCTTCTGTTTGAAA+TGG | + | chr1_4:5143182-5143201 | Msa0145460:exon | 40.0% | |
| AAGTAGATGGAAGCAGATCT+TGG | + | chr1_4:5143205-5143224 | Msa0145460:CDS | 40.0% | |
| AGTAGATGGAAGCAGATCTT+GGG | + | chr1_4:5143206-5143225 | Msa0145460:CDS | 40.0% | |
| TAGATAGTGTTTGCAGAACC+AGG | - | chr1_4:5143737-5143756 | None:intergenic | 40.0% | |
| !! | CCTTTAAGGGTCACATTTTC+TGG | - | chr1_4:5144047-5144066 | None:intergenic | 40.0% |
| CCAGAAAATGTGACCCTTAA+AGG | + | chr1_4:5144044-5144063 | Msa0145460:CDS | 40.0% | |
| !! | ATTGGGTTGACAACTAGAGA+TGG | + | chr1_4:5144089-5144108 | Msa0145460:CDS | 40.0% |
| AGATGGTACTGTTTACTTCG+TGG | + | chr1_4:5144106-5144125 | Msa0145460:CDS | 40.0% | |
| GATGGTACTGTTTACTTCGT+GGG | + | chr1_4:5144107-5144126 | Msa0145460:CDS | 40.0% | |
| CACCGTTGTACTTAAAGACA+AGG | - | chr1_4:5144181-5144200 | None:intergenic | 40.0% | |
| ! | TGGAGTTAGTTTCTGTGAGA+AGG | + | chr1_4:5144229-5144248 | Msa0145460:CDS | 40.0% |
| GACATGCTCAAACTGAAGAA+GGG | + | chr1_4:5144279-5144298 | Msa0145460:CDS | 40.0% | |
| ACATGCTCAAACTGAAGAAG+GGG | + | chr1_4:5144280-5144299 | Msa0145460:CDS | 40.0% | |
| GTCAATACTGCTTCTAATGG+TGG | + | chr1_4:5144341-5144360 | Msa0145460:CDS | 40.0% | |
| !! | GTTTTGACAGGTACAGCTAA+TGG | - | chr1_4:5144425-5144444 | None:intergenic | 40.0% |
| TATTGAATCTGCTTCCCCTA+AGG | + | chr1_4:5144472-5144491 | Msa0145460:CDS | 40.0% | |
| GTTGTTTGGGAAAGTAGATG+GGG | - | chr1_4:5144502-5144521 | None:intergenic | 40.0% | |
| GGTTGTTTGGGAAAGTAGAT+GGG | - | chr1_4:5144503-5144522 | None:intergenic | 40.0% | |
| TGGTTGTTTGGGAAAGTAGA+TGG | - | chr1_4:5144504-5144523 | None:intergenic | 40.0% | |
| TACTTTCCCAAACAACCAAC+CGG | + | chr1_4:5144506-5144525 | Msa0145460:CDS | 40.0% | |
| ! | AACTTCATTAGCTGGCTTCT+TGG | - | chr1_4:5144540-5144559 | None:intergenic | 40.0% |
| ! | CGAGAATTACCTTCTTTTGG+CGG | - | chr1_4:5144593-5144612 | None:intergenic | 40.0% |
| TGATTTGAGGGCTTCTAACA+AGG | + | chr1_4:5144625-5144644 | Msa0145460:CDS | 40.0% | |
| AGGGAATAAGCCCAAATTGT+AGG | + | chr1_4:5145227-5145246 | Msa0145460:intron | 40.0% | |
| AGAAACAGTAACAGAGAGGA+GGG | + | chr1_4:5145264-5145283 | Msa0145460:intron | 40.0% | |
| !! | GAGAATTAGTGGATTGCTTG+AGG | + | chr1_4:5145292-5145311 | Msa0145460:intron | 40.0% |
| !! | TAGTGGATTGCTTGAGGATT+CGG | + | chr1_4:5145298-5145317 | Msa0145460:intron | 40.0% |
| ! | CTTGAGGATTCGGTTATATG+AGG | + | chr1_4:5145308-5145327 | Msa0145460:intron | 40.0% |
| ! | AGGATTCGGTTATATGAGGT+GGG | + | chr1_4:5145312-5145331 | Msa0145460:intron | 40.0% |
| !! | TGTGTAGAGCATTGCTCTTT+GGG | + | chr1_4:5145406-5145425 | Msa0145460:intron | 40.0% |
| TAGCAATCTGACACTTGTCA+AGG | + | chr1_4:5145529-5145548 | Msa0145460:intron | 40.0% | |
| ! | CTCCTTTTATGTATGGAGGA+TGG | + | chr1_4:5145897-5145916 | Msa0145460:intron | 40.0% |
| TTCATCCCATTCAATGTGCT+TGG | + | chr1_4:5146261-5146280 | Msa0145460:intron | 40.0% | |
| TGCGCTATGGAAAATTGATG+GGG | - | chr1_4:5146344-5146363 | None:intergenic | 40.0% | |
| GATGCGCTATGGAAAATTGA+TGG | - | chr1_4:5146346-5146365 | None:intergenic | 40.0% | |
| GTAATTTGAAGGGAGAACAG+TGG | + | chr1_4:5146396-5146415 | Msa0145460:CDS | 40.0% | |
| CTTGTATGCACTCTACTTCT+AGG | - | chr1_4:5146437-5146456 | None:intergenic | 40.0% | |
| CATACAAGTCACACTTTGTG+TGG | + | chr1_4:5146449-5146468 | Msa0145460:CDS | 40.0% | |
| CGTGCCAATAACATAAAGCT+TGG | + | chr1_4:5146491-5146510 | Msa0145460:CDS | 40.0% | |
| AGTCTGTCATAGGTCAACCT+AGG | - | chr1_4:5142991-5143010 | None:intergenic | 45.0% | |
| TTCACGAGGAAGATGAATGG+TGG | - | chr1_4:5143081-5143100 | None:intergenic | 45.0% | |
| TCTTCCTCGTGAACCGTTAA+AGG | + | chr1_4:5143088-5143107 | Msa0145460:five_prime_UTR | 45.0% | |
| CTTCCTCGTGAACCGTTAAA+GGG | + | chr1_4:5143089-5143108 | Msa0145460:five_prime_UTR | 45.0% | |
| AAACCCTTTAACGGTTCACG+AGG | - | chr1_4:5143095-5143114 | None:intergenic | 45.0% | |
| TTCAAGGTTCAAATCCCCTC+GGG | - | chr1_4:5143826-5143845 | None:intergenic | 45.0% | |
| CTTCAAGGTTCAAATCCCCT+CGG | - | chr1_4:5143827-5143846 | None:intergenic | 45.0% | |
| AGCTCCACTAGGACCTTTAA+GGG | - | chr1_4:5144060-5144079 | None:intergenic | 45.0% | |
| CAACGGTGAATCTCTCTTTG+AGG | + | chr1_4:5144193-5144212 | Msa0145460:CDS | 45.0% | |
| GGACATGCTCAAACTGAAGA+AGG | + | chr1_4:5144278-5144297 | Msa0145460:CDS | 45.0% | |
| CATGCTCAAACTGAAGAAGG+GGG | + | chr1_4:5144281-5144300 | Msa0145460:CDS | 45.0% | |
| GTGGTTCACCTGAGAGATTT+CGG | + | chr1_4:5144372-5144391 | Msa0145460:CDS | 45.0% | |
| TGGTTCACCTGAGAGATTTC+GGG | + | chr1_4:5144373-5144392 | Msa0145460:CDS | 45.0% | |
| AGTAGATGGGGAGTTCCTTA+GGG | - | chr1_4:5144490-5144509 | None:intergenic | 45.0% | |
| AAGTAGATGGGGAGTTCCTT+AGG | - | chr1_4:5144491-5144510 | None:intergenic | 45.0% | |
| CCAGGTGTAACTTCATTAGC+TGG | - | chr1_4:5144548-5144567 | None:intergenic | 45.0% | |
| CCAGCTAATGAAGTTACACC+TGG | + | chr1_4:5144545-5144564 | Msa0145460:CDS | 45.0% | |
| !! | TGAGGGAGCACTTGATTTGA+GGG | + | chr1_4:5144613-5144632 | Msa0145460:CDS | 45.0% |
| GCTTCTAACAAGGAACTCTC+AGG | + | chr1_4:5144635-5144654 | Msa0145460:CDS | 45.0% | |
| ! | TGGTTGGCTACTCTGAGTTT+AGG | - | chr1_4:5145011-5145030 | None:intergenic | 45.0% |
| ACATAGGCCTGAGTGACAAA+GGG | + | chr1_4:5145208-5145227 | Msa0145460:intron | 45.0% | |
| GCTTATTCCCTTTGTCACTC+AGG | - | chr1_4:5145218-5145237 | None:intergenic | 45.0% | |
| GAGGAGAAACAGTAACAGAG+AGG | + | chr1_4:5145260-5145279 | Msa0145460:intron | 45.0% | |
| GAGAAACAGTAACAGAGAGG+AGG | + | chr1_4:5145263-5145282 | Msa0145460:intron | 45.0% | |
| GGAGGGAAAGTGAGAATTAG+TGG | + | chr1_4:5145281-5145300 | Msa0145460:intron | 45.0% | |
| ! | GAGGATTCGGTTATATGAGG+TGG | + | chr1_4:5145311-5145330 | Msa0145460:intron | 45.0% |
| GTTATATGAGGTGGGAGTTG+TGG | + | chr1_4:5145320-5145339 | Msa0145460:intron | 45.0% | |
| !! | CTGTGTAGAGCATTGCTCTT+TGG | + | chr1_4:5145405-5145424 | Msa0145460:intron | 45.0% |
| GAGAAACCGGGAATTGCAAA+TGG | - | chr1_4:5145466-5145485 | None:intergenic | 45.0% | |
| GTCAAGGTTATCGTCAGCAA+AGG | + | chr1_4:5145650-5145669 | Msa0145460:CDS | 45.0% | |
| GAACAACTCACCAGAATACG+TGG | - | chr1_4:5145756-5145775 | None:intergenic | 45.0% | |
| TGTATGGAGGATGGTAAGCA+TGG | + | chr1_4:5145906-5145925 | Msa0145460:intron | 45.0% | |
| TCCATAGCGCATCTTCCAAA+CGG | + | chr1_4:5146353-5146372 | Msa0145460:CDS | 45.0% | |
| ACAAGTCACACTTTGTGTGG+AGG | + | chr1_4:5146452-5146471 | Msa0145460:CDS | 45.0% | |
| ACAGCTAATTGGGGTGTGAA+TGG | - | chr1_4:5146779-5146798 | None:intergenic | 45.0% | |
| CGGTTCACGAGGAAGATGAA+TGG | - | chr1_4:5143084-5143103 | None:intergenic | 50.0% | |
| TTTGCAGAACCAGGCAGGAA+AGG | - | chr1_4:5143728-5143747 | None:intergenic | 50.0% | |
| TAGTGTTTGCAGAACCAGGC+AGG | - | chr1_4:5143733-5143752 | None:intergenic | 50.0% | |
| GTGACCCTTAAAGGTCCTAG+TGG | + | chr1_4:5144053-5144072 | Msa0145460:CDS | 50.0% | |
| CAGCTCCACTAGGACCTTTA+AGG | - | chr1_4:5144061-5144080 | None:intergenic | 50.0% | |
| ATATCCCACACAGCTCCACT+AGG | - | chr1_4:5144071-5144090 | None:intergenic | 50.0% | |
| AGTGGAGCTGTGTGGGATAT+TGG | + | chr1_4:5144071-5144090 | Msa0145460:CDS | 50.0% | |
| GTGGAGCTGTGTGGGATATT+GGG | + | chr1_4:5144072-5144091 | Msa0145460:CDS | 50.0% | |
| GGTACTGTTTACTTCGTGGG+CGG | + | chr1_4:5144110-5144129 | Msa0145460:CDS | 50.0% | |
| TGTTTACTTCGTGGGCGGTT+GGG | + | chr1_4:5144115-5144134 | Msa0145460:CDS | 50.0% | |
| AACTGAAGAAGGGGGTAGCA+AGG | + | chr1_4:5144289-5144308 | Msa0145460:CDS | 50.0% | |
| !! | TCTAATGGTGGCGTTGACTG+TGG | + | chr1_4:5144353-5144372 | Msa0145460:CDS | 50.0% |
| !! | CACCTGAGAGATTTCGGGTT+CGG | + | chr1_4:5144378-5144397 | Msa0145460:CDS | 50.0% |
| GTAGATGGGGAGTTCCTTAG+GGG | - | chr1_4:5144489-5144508 | None:intergenic | 50.0% | |
| ! | CTTTGGCCGGTTGGTTGTTT+GGG | - | chr1_4:5144515-5144534 | None:intergenic | 50.0% |
| ! | TAGCTGGCTTCTTGGTCCTT+TGG | - | chr1_4:5144532-5144551 | None:intergenic | 50.0% |
| GTCTTCCTCGCTTCTTAGTC+TGG | - | chr1_4:5144571-5144590 | None:intergenic | 50.0% | |
| !! | GTGAGGGAGCACTTGATTTG+AGG | + | chr1_4:5144612-5144631 | Msa0145460:CDS | 50.0% |
| GACATAGGCCTGAGTGACAA+AGG | + | chr1_4:5145207-5145226 | Msa0145460:intron | 50.0% | |
| AGCATTGCTCTTTGGGCTGT+AGG | + | chr1_4:5145413-5145432 | Msa0145460:intron | 50.0% | |
| GCATTGCTCTTTGGGCTGTA+GGG | + | chr1_4:5145414-5145433 | Msa0145460:intron | 50.0% | |
| CGCGTTCCATTTGCAATTCC+CGG | + | chr1_4:5145457-5145476 | Msa0145460:intron | 50.0% | |
| TGTCGATGGTCCACGTATTC+TGG | + | chr1_4:5145743-5145762 | Msa0145460:CDS | 50.0% | |
| GTCACACTTTGTGTGGAGGA+TGG | + | chr1_4:5146456-5146475 | Msa0145460:CDS | 50.0% | |
| ! | ATTACGTGTCCGTGTTGCTG+AGG | + | chr1_4:5146550-5146569 | Msa0145460:CDS | 50.0% |
| ! | GCTAGTCTCCGAGGTTCAAA+AGG | + | chr1_4:5146586-5146605 | Msa0145460:CDS | 50.0% |
| !! | GCCATTTTCAACCGTCCCGA+GGG | + | chr1_4:5143808-5143827 | Msa0145460:intron | 55.0% |
| ! | CCATTTTCAACCGTCCCGAG+GGG | + | chr1_4:5143809-5143828 | Msa0145460:intron | 55.0% |
| AGGTTCAAATCCCCTCGGGA+CGG | - | chr1_4:5143822-5143841 | None:intergenic | 55.0% | |
| AAGGTCCTAGTGGAGCTGTG+TGG | + | chr1_4:5144063-5144082 | Msa0145460:CDS | 55.0% | |
| AGGTCCTAGTGGAGCTGTGT+GGG | + | chr1_4:5144064-5144083 | Msa0145460:CDS | 55.0% | |
| CTGTTTACTTCGTGGGCGGT+TGG | + | chr1_4:5144114-5144133 | Msa0145460:CDS | 55.0% | |
| ! | CCTTTGGCCGGTTGGTTGTT+TGG | - | chr1_4:5144516-5144535 | None:intergenic | 55.0% |
| CCAAACAACCAACCGGCCAA+AGG | + | chr1_4:5144513-5144532 | Msa0145460:CDS | 55.0% | |
| TTCTTGGTCCTTTGGCCGGT+TGG | - | chr1_4:5144524-5144543 | None:intergenic | 55.0% | |
| TGGCTTCTTGGTCCTTTGGC+CGG | - | chr1_4:5144528-5144547 | None:intergenic | 55.0% | |
| CGAGGAAGACCGCCAAAAGA+AGG | + | chr1_4:5144581-5144600 | Msa0145460:CDS | 55.0% | |
| ATGAGGTGGGAGTTGTGGAG+AGG | + | chr1_4:5145325-5145344 | Msa0145460:intron | 55.0% | |
| TGGGAGTTGTGGAGAGGAAG+AGG | + | chr1_4:5145331-5145350 | Msa0145460:intron | 55.0% | |
| GGGAGTTGTGGAGAGGAAGA+GGG | + | chr1_4:5145332-5145351 | Msa0145460:intron | 55.0% | |
| GCCGTTTGGAAGATGCGCTA+TGG | - | chr1_4:5146357-5146376 | None:intergenic | 55.0% | |
| CTTCGTCGACCTCAGCAACA+CGG | - | chr1_4:5146562-5146581 | None:intergenic | 55.0% | |
| GTTGCTGAGGTCGACGAAGA+CGG | + | chr1_4:5146563-5146582 | Msa0145460:CDS | 55.0% | |
| TTGCTGAGGTCGACGAAGAC+GGG | + | chr1_4:5146564-5146583 | Msa0145460:CDS | 55.0% | |
| !! | GGCCATTTTCAACCGTCCCG+AGG | + | chr1_4:5143807-5143826 | Msa0145460:intron | 60.0% |
| CCCCTCGGGACGGTTGAAAA+TGG | - | chr1_4:5143812-5143831 | None:intergenic | 60.0% | |
| CGCCGAACCCGAAATCTCTC+AGG | - | chr1_4:5144383-5144402 | None:intergenic | 60.0% | |
| CCTCGCTTCTTAGTCTGGCC+AGG | - | chr1_4:5144566-5144585 | None:intergenic | 60.0% | |
| CCTGGCCAGACTAAGAAGCG+AGG | + | chr1_4:5144563-5144582 | Msa0145460:CDS | 60.0% | |
| !! | TGGAGAGGAAGAGGGCATCG+AGG | + | chr1_4:5145340-5145359 | Msa0145460:intron | 60.0% |
| CCTTGACTGTGCTGCCTCTG+TGG | - | chr1_4:5145637-5145656 | None:intergenic | 60.0% | |
| CCACAGAGGCAGCACAGTCA+AGG | + | chr1_4:5145634-5145653 | Msa0145460:intron | 60.0% | |
| !! | CGAAGACGGGCTAGTCTCCG+AGG | + | chr1_4:5146577-5146596 | Msa0145460:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 5142988 | 5146925 | 5142988 | ID=Msa0145460;Name=Msa0145460 |
| chr1_4 | mRNA | 5142988 | 5146925 | 5142988 | ID=Msa0145460-mRNA-1;Parent=Msa0145460;Name=Msa0145460-mRNA-1;_AED=0.37;_eAED=0.37;_QI=213|1|1|1|1|1|4|279|400 |
| chr1_4 | exon | 5142988 | 5143311 | 5142988 | ID=Msa0145460-mRNA-1:exon:2118;Parent=Msa0145460-mRNA-1 |
| chr1_4 | exon | 5144002 | 5144656 | 5144002 | ID=Msa0145460-mRNA-1:exon:2119;Parent=Msa0145460-mRNA-1 |
| chr1_4 | exon | 5145640 | 5145764 | 5145640 | ID=Msa0145460-mRNA-1:exon:2120;Parent=Msa0145460-mRNA-1 |
| chr1_4 | exon | 5146335 | 5146925 | 5146335 | ID=Msa0145460-mRNA-1:exon:2121;Parent=Msa0145460-mRNA-1 |
| chr1_4 | five_prime_UTR | 5142988 | 5143200 | 5142988 | ID=Msa0145460-mRNA-1:five_prime_utr;Parent=Msa0145460-mRNA-1 |
| chr1_4 | CDS | 5143201 | 5143311 | 5143201 | ID=Msa0145460-mRNA-1:cds;Parent=Msa0145460-mRNA-1 |
| chr1_4 | CDS | 5144002 | 5144656 | 5144002 | ID=Msa0145460-mRNA-1:cds;Parent=Msa0145460-mRNA-1 |
| chr1_4 | CDS | 5145640 | 5145764 | 5145640 | ID=Msa0145460-mRNA-1:cds;Parent=Msa0145460-mRNA-1 |
| chr1_4 | CDS | 5146335 | 5146646 | 5146335 | ID=Msa0145460-mRNA-1:cds;Parent=Msa0145460-mRNA-1 |
| chr1_4 | three_prime_UTR | 5146647 | 5146925 | 5146647 | ID=Msa0145460-mRNA-1:three_prime_utr;Parent=Msa0145460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
