Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0051280 | sp|Q8RYD1|REM16_ARATH | 32.597 | 362 | 173 | 10 | 9 | 366 | 11 | 305 | 1.94e-47 | 168 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0051280 | G7I578 | 95.750 | 400 | 16 | 1 | 1 | 400 | 1 | 399 | 0.0 | 794 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0051280 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002390 | Msa0051280 | 0.946083 | 9.069370e-105 | -8.615850e-47 |
| Msa0051180 | Msa0051280 | 0.965801 | 4.453733e-125 | -8.615850e-47 |
| Msa0051280 | Msa0145460 | 0.911684 | 4.599425e-83 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0051280 | MtrunA17_Chr1g0154211 | 95.750 | 400 | 16 | 1 | 1 | 400 | 1 | 399 | 0.0 | 794 |
| Msa0051280 | MtrunA17_Chr1g0154111 | 67.105 | 380 | 98 | 5 | 6 | 382 | 9 | 364 | 6.67e-175 | 501 |
| Msa0051280 | MtrunA17_Chr1g0154111 | 56.710 | 231 | 60 | 6 | 38 | 255 | 368 | 571 | 1.35e-68 | 227 |
| Msa0051280 | MtrunA17_Chr1g0154101 | 58.352 | 449 | 116 | 6 | 7 | 388 | 168 | 612 | 4.28e-170 | 497 |
| Msa0051280 | MtrunA17_Chr1g0154101 | 75.776 | 161 | 39 | 0 | 6 | 166 | 8 | 168 | 6.86e-80 | 262 |
| Msa0051280 | MtrunA17_Chr1g0154101 | 32.041 | 387 | 202 | 11 | 20 | 397 | 503 | 837 | 1.83e-41 | 155 |
| Msa0051280 | MtrunA17_Chr1g0154131 | 64.533 | 375 | 62 | 7 | 7 | 380 | 168 | 472 | 5.47e-160 | 458 |
| Msa0051280 | MtrunA17_Chr1g0154131 | 76.398 | 161 | 37 | 1 | 6 | 166 | 9 | 168 | 2.92e-80 | 254 |
| Msa0051280 | MtrunA17_Chr1g0154171 | 60.202 | 397 | 114 | 5 | 1 | 396 | 1 | 354 | 8.11e-157 | 446 |
| Msa0051280 | MtrunA17_Chr1g0154191 | 55.473 | 402 | 127 | 4 | 6 | 396 | 5 | 365 | 5.68e-149 | 426 |
| Msa0051280 | MtrunA17_Chr1g0154071 | 56.417 | 374 | 136 | 7 | 11 | 383 | 145 | 492 | 1.01e-134 | 395 |
| Msa0051280 | MtrunA17_Chr1g0154071 | 74.265 | 136 | 34 | 1 | 3 | 138 | 8 | 142 | 6.88e-63 | 209 |
| Msa0051280 | MtrunA17_Chr1g0154151 | 53.867 | 362 | 106 | 8 | 38 | 395 | 19 | 323 | 7.59e-120 | 351 |
| Msa0051280 | MtrunA17_Chr1g0154241 | 67.578 | 256 | 73 | 5 | 6 | 255 | 5 | 256 | 6.24e-115 | 336 |
| Msa0051280 | MtrunA17_Chr1g0154251 | 50.256 | 390 | 156 | 11 | 6 | 363 | 10 | 393 | 9.61e-112 | 337 |
| Msa0051280 | MtrunA17_Chr1g0154161 | 90.511 | 137 | 13 | 0 | 4 | 140 | 11 | 147 | 5.69e-86 | 264 |
| Msa0051280 | MtrunA17_Chr1g0154161 | 49.029 | 206 | 95 | 2 | 192 | 396 | 122 | 318 | 4.98e-55 | 184 |
| Msa0051280 | MtrunA17_Chr1g0154041 | 41.979 | 374 | 183 | 8 | 22 | 388 | 15 | 361 | 1.63e-81 | 261 |
| Msa0051280 | MtrunA17_Chr1g0154041 | 31.606 | 386 | 207 | 12 | 20 | 396 | 252 | 589 | 3.87e-39 | 147 |
| Msa0051280 | MtrunA17_Chr1g0154121 | 62.366 | 93 | 33 | 1 | 305 | 395 | 1 | 93 | 5.00e-35 | 124 |
| Msa0051280 | MtrunA17_Chr6g0464121 | 56.000 | 75 | 32 | 1 | 309 | 382 | 122 | 196 | 1.28e-21 | 94.7 |
| Msa0051280 | MtrunA17_Chr7g0233571 | 37.755 | 98 | 61 | 0 | 16 | 113 | 3 | 100 | 7.50e-16 | 76.3 |
| Msa0051280 | MtrunA17_Chr3g0131891 | 35.484 | 93 | 60 | 0 | 21 | 113 | 17 | 109 | 3.74e-15 | 75.9 |
| Msa0051280 | MtrunA17_Chr7g0233561 | 36.957 | 92 | 58 | 0 | 21 | 112 | 16 | 107 | 6.44e-15 | 75.1 |
| Msa0051280 | MtrunA17_Chr7g0233531 | 40.000 | 75 | 45 | 0 | 39 | 113 | 2 | 76 | 2.46e-13 | 70.1 |
| Msa0051280 | MtrunA17_Chr5g0419201 | 36.264 | 91 | 58 | 0 | 23 | 113 | 16 | 106 | 1.82e-12 | 65.9 |
| Msa0051280 | MtrunA17_Chr7g0233541 | 37.975 | 79 | 49 | 0 | 39 | 117 | 2 | 80 | 2.15e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0051280 | AT4G33280.3 | 33.158 | 380 | 208 | 11 | 9 | 366 | 11 | 366 | 3.65e-50 | 174 |
| Msa0051280 | AT4G33280.1 | 32.597 | 362 | 173 | 10 | 9 | 366 | 11 | 305 | 1.98e-48 | 168 |
| Msa0051280 | AT4G33280.2 | 55.385 | 130 | 55 | 2 | 9 | 137 | 11 | 138 | 7.22e-45 | 157 |
| Msa0051280 | AT3G18990.2 | 24.810 | 395 | 230 | 10 | 23 | 399 | 6 | 351 | 3.63e-22 | 97.4 |
| Msa0051280 | AT3G18990.1 | 25.000 | 380 | 216 | 8 | 23 | 379 | 6 | 339 | 4.20e-22 | 96.7 |
| Msa0051280 | AT4G34400.2 | 35.644 | 101 | 61 | 2 | 23 | 122 | 17 | 114 | 1.23e-16 | 81.6 |
| Msa0051280 | AT4G34400.1 | 35.644 | 101 | 61 | 2 | 23 | 122 | 17 | 114 | 1.23e-16 | 81.6 |
| Msa0051280 | AT3G06220.1 | 30.233 | 129 | 80 | 4 | 23 | 151 | 11 | 129 | 1.88e-14 | 71.6 |
| Msa0051280 | AT3G06160.5 | 26.512 | 215 | 133 | 7 | 23 | 236 | 11 | 201 | 1.00e-13 | 72.0 |
| Msa0051280 | AT3G06160.4 | 26.512 | 215 | 133 | 7 | 23 | 236 | 11 | 201 | 1.00e-13 | 72.0 |
| Msa0051280 | AT3G06160.3 | 26.512 | 215 | 133 | 7 | 23 | 236 | 11 | 201 | 1.00e-13 | 72.0 |
| Msa0051280 | AT3G06160.1 | 26.512 | 215 | 133 | 7 | 23 | 236 | 26 | 216 | 1.06e-13 | 72.0 |
| Msa0051280 | AT3G06160.2 | 26.512 | 215 | 133 | 7 | 23 | 236 | 70 | 260 | 1.52e-13 | 72.0 |
| Msa0051280 | AT3G53310.1 | 35.165 | 91 | 57 | 1 | 23 | 113 | 12 | 100 | 6.65e-12 | 66.2 |
| Msa0051280 | AT5G60130.5 | 38.462 | 91 | 51 | 2 | 35 | 120 | 25 | 115 | 1.41e-11 | 64.7 |
| Msa0051280 | AT5G60130.3 | 39.326 | 89 | 49 | 2 | 37 | 120 | 1 | 89 | 2.18e-11 | 64.7 |
| Msa0051280 | AT5G66980.1 | 40.244 | 82 | 45 | 1 | 35 | 112 | 21 | 102 | 2.39e-11 | 65.1 |
| Msa0051280 | AT5G60130.2 | 39.326 | 89 | 49 | 2 | 37 | 120 | 27 | 115 | 2.84e-11 | 64.3 |
| Msa0051280 | AT5G60130.4 | 39.326 | 89 | 49 | 2 | 37 | 120 | 24 | 112 | 3.12e-11 | 64.7 |
| Msa0051280 | AT5G60140.1 | 32.727 | 110 | 69 | 2 | 14 | 120 | 7 | 114 | 3.16e-11 | 64.7 |
| Msa0051280 | AT5G60130.1 | 39.326 | 89 | 49 | 2 | 37 | 120 | 27 | 115 | 3.18e-11 | 64.7 |
Find 114 sgRNAs with CRISPR-Local
Find 251 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTCCAAGCTTTATGTTAT+TGG | 0.166151 | 1_2:+5386373 | None:intergenic |
| TCTTCCTCGTGAACCGTTAA+AGG | 0.176194 | 1_2:-5389749 | Msa0051280:five_prime_UTR |
| CAGCTCCACTAGGACCTTTA+AGG | 0.180866 | 1_2:+5388779 | None:intergenic |
| CCAGAAAATGTGACCCTTAA+AGG | 0.236805 | 1_2:-5388793 | Msa0051280:CDS |
| AACTTCATTAGCTGGCTTCT+TGG | 0.255515 | 1_2:+5388300 | None:intergenic |
| CCTTTGGCCGGTTGGTTGTT+TGG | 0.258620 | 1_2:+5388324 | None:intergenic |
| GAAAGTATTGATCATCAAAA+TGG | 0.270213 | 1_2:-5386260 | Msa0051280:CDS |
| TACAAGTTGTTGTTGAAAAT+TGG | 0.275640 | 1_2:+5389545 | None:intergenic |
| TGGTTGTTTGGGAAAGTAGA+TGG | 0.276616 | 1_2:+5388336 | None:intergenic |
| CTTTGGCCGGTTGGTTGTTT+GGG | 0.281327 | 1_2:+5388325 | None:intergenic |
| TCACGAGAATTACCTTCTTT+TGG | 0.284057 | 1_2:+5388244 | None:intergenic |
| TGGTTCACCTGAGAGATTTC+GGG | 0.291973 | 1_2:-5388464 | Msa0051280:CDS |
| CTCTCTGCTTCTGTTTGAAA+TGG | 0.300695 | 1_2:-5389655 | Msa0051280:exon |
| AGTGGAGCTGTGTGGGATAT+TGG | 0.305311 | 1_2:-5388766 | Msa0051280:CDS |
| GTGGTTCACCTGAGAGATTT+CGG | 0.308902 | 1_2:-5388465 | Msa0051280:CDS |
| TGTCGATGGTCCACGTATTC+TGG | 0.310730 | 1_2:-5387125 | Msa0051280:intron |
| AAGTAGATGGGGAGTTCCTT+AGG | 0.312746 | 1_2:+5388349 | None:intergenic |
| CTTGGGAAGAAGATATTTAC+TGG | 0.326346 | 1_2:-5389614 | Msa0051280:CDS |
| TTAGTGATGATACAGCTAAT+TGG | 0.326516 | 1_2:+5386081 | None:intergenic |
| GTCTTCCTCGCTTCTTAGTC+TGG | 0.344493 | 1_2:+5388269 | None:intergenic |
| TAGCTGGCTTCTTGGTCCTT+TGG | 0.354794 | 1_2:+5388308 | None:intergenic |
| CACCTGAGAGATTTCGGGTT+CGG | 0.376625 | 1_2:-5388459 | Msa0051280:CDS |
| CTTGTATGCACTCTACTTCT+AGG | 0.379008 | 1_2:+5386434 | None:intergenic |
| GTGGAGCTGTGTGGGATATT+GGG | 0.390357 | 1_2:-5388765 | Msa0051280:CDS |
| CAAGAATGTTAGCAAGTAGA+TGG | 0.391596 | 1_2:+5386199 | None:intergenic |
| ATAATCTTTATCTTGCCGTT+TGG | 0.397078 | 1_2:+5386500 | None:intergenic |
| TAGTGATGATACAGCTAATT+GGG | 0.397772 | 1_2:+5386082 | None:intergenic |
| GTGAGGGAGCACTTGATTTG+AGG | 0.403845 | 1_2:-5388225 | Msa0051280:CDS |
| CTTCCTCGTGAACCGTTAAA+GGG | 0.406379 | 1_2:-5389748 | Msa0051280:five_prime_UTR |
| TGTTTACTTCGTGGGCGGTT+GGG | 0.420992 | 1_2:-5388722 | Msa0051280:CDS |
| TGAGGGAGCACTTGATTTGA+GGG | 0.422320 | 1_2:-5388224 | Msa0051280:CDS |
| TAGGGCTTTAAACCCTTTAA+CGG | 0.424192 | 1_2:+5389736 | None:intergenic |
| CTGTTTACTTCGTGGGCGGT+TGG | 0.428777 | 1_2:-5388723 | Msa0051280:CDS |
| TTCTTGGTCCTTTGGCCGGT+TGG | 0.434930 | 1_2:+5388316 | None:intergenic |
| CTGTTTGAAATGGAAGTAGA+TGG | 0.435371 | 1_2:-5389645 | Msa0051280:exon |
| GGTTGTTTGGGAAAGTAGAT+GGG | 0.439627 | 1_2:+5388337 | None:intergenic |
| TGGCTTCTTGGTCCTTTGGC+CGG | 0.440342 | 1_2:+5388312 | None:intergenic |
| AAGTAGATGGAAGCAGATCT+TGG | 0.447214 | 1_2:-5389632 | Msa0051280:CDS |
| CCTCGCTTCTTAGTCTGGCC+AGG | 0.449815 | 1_2:+5388274 | None:intergenic |
| AGTAGATGGGGAGTTCCTTA+GGG | 0.454636 | 1_2:+5388350 | None:intergenic |
| CCAGGTGTAACTTCATTAGC+TGG | 0.461198 | 1_2:+5388292 | None:intergenic |
| GATGCGCTATGGAAAATTGA+TGG | 0.463928 | 1_2:+5386525 | None:intergenic |
| AGCTCCACTAGGACCTTTAA+GGG | 0.472647 | 1_2:+5388780 | None:intergenic |
| CGCCGAACCCGAAATCTCTC+AGG | 0.473424 | 1_2:+5388457 | None:intergenic |
| AAAGTATTGATCATCAAAAT+GGG | 0.485102 | 1_2:-5386259 | Msa0051280:CDS |
| GAAGTCAATACTGCTTCTAA+TGG | 0.487691 | 1_2:-5388499 | Msa0051280:CDS |
| GATGGTACTGTTTACTTCGT+GGG | 0.490529 | 1_2:-5388730 | Msa0051280:CDS |
| TACTTTCCCAAACAACCAAC+CGG | 0.491088 | 1_2:-5388331 | Msa0051280:CDS |
| CAACGGTGAATCTCTCTTTG+AGG | 0.491919 | 1_2:-5388644 | Msa0051280:CDS |
| GATTATTCTTCGTAATTTGA+AGG | 0.492590 | 1_2:-5386483 | Msa0051280:CDS |
| TCCATAGCGCATCTTCCAAA+CGG | 0.492621 | 1_2:-5386515 | Msa0051280:CDS |
| CGAGGAAGACCGCCAAAAGA+AGG | 0.494591 | 1_2:-5388256 | Msa0051280:CDS |
| AAGAACACAAACACATCTGT+TGG | 0.496016 | 1_2:-5388523 | Msa0051280:CDS |
| GCTAGTCTCCGAGGTTCAAA+AGG | 0.500197 | 1_2:-5386282 | Msa0051280:CDS |
| TTGCTGAGGTCGACGAAGAC+GGG | 0.500559 | 1_2:-5386304 | Msa0051280:CDS |
| GGACATGCTCAAACTGAAGA+AGG | 0.510328 | 1_2:-5388559 | Msa0051280:CDS |
| ATTATTCTTCGTAATTTGAA+GGG | 0.513122 | 1_2:-5386482 | Msa0051280:CDS |
| GTTGCTGAGGTCGACGAAGA+CGG | 0.514090 | 1_2:-5386305 | Msa0051280:CDS |
| AGTAGATGGAAGCAGATCTT+GGG | 0.514632 | 1_2:-5389631 | Msa0051280:CDS |
| AACAAAATATGGAAAAGTTG+AGG | 0.516177 | 1_2:+5387168 | None:intergenic |
| TATTGAATCTGCTTCCCCTA+AGG | 0.518194 | 1_2:-5388365 | Msa0051280:CDS |
| GAAAAGTTGAGGTAAATGAC+TGG | 0.520804 | 1_2:+5387179 | None:intergenic |
| AACAGAAGCAGAGAGTGAAA+TGG | 0.524263 | 1_2:+5389663 | None:intergenic |
| CACCGTTGTACTTAAAGACA+AGG | 0.534444 | 1_2:+5388659 | None:intergenic |
| ATGCGCTATGGAAAATTGAT+GGG | 0.534562 | 1_2:+5386526 | None:intergenic |
| TCCGTAGGCTCGTGAACTGT+TGG | 0.536321 | 1_2:-5385965 | Msa0051280:three_prime_UTR |
| AGATGGTACTGTTTACTTCG+TGG | 0.536376 | 1_2:-5388731 | Msa0051280:CDS |
| CGTGCCAATAACATAAAGCT+TGG | 0.537860 | 1_2:-5386377 | Msa0051280:CDS |
| GACATGCTCAAACTGAAGAA+GGG | 0.539180 | 1_2:-5388558 | Msa0051280:CDS |
| GCTTCTAACAAGGAACTCTC+AGG | 0.540714 | 1_2:-5388202 | Msa0051280:intron |
| ATCAAAACATTCAATGTCGA+TGG | 0.543207 | 1_2:-5387139 | Msa0051280:CDS |
| GCCGTTTGGAAGATGCGCTA+TGG | 0.543496 | 1_2:+5386514 | None:intergenic |
| CCAGCTAATGAAGTTACACC+TGG | 0.556435 | 1_2:-5388292 | Msa0051280:CDS |
| ACAGCTAATTGGGGTGTGAA+TGG | 0.556813 | 1_2:+5386092 | None:intergenic |
| TTCCTTGTCTTTAAGTACAA+CGG | 0.557608 | 1_2:-5388661 | Msa0051280:CDS |
| TGGAGTTAGTTTCTGTGAGA+AGG | 0.558125 | 1_2:-5388608 | Msa0051280:CDS |
| CATGAATTATGATGATACAT+TGG | 0.565560 | 1_2:+5386152 | None:intergenic |
| ACCAACAGTTCACGAGCCTA+CGG | 0.567318 | 1_2:+5385964 | None:intergenic |
| AGGTCCTAGTGGAGCTGTGT+GGG | 0.568073 | 1_2:-5388773 | Msa0051280:CDS |
| TGATTTGAGGGCTTCTAACA+AGG | 0.574575 | 1_2:-5388212 | Msa0051280:CDS |
| CCAAACAACCAACCGGCCAA+AGG | 0.585015 | 1_2:-5388324 | Msa0051280:CDS |
| ATATCCCACACAGCTCCACT+AGG | 0.588180 | 1_2:+5388769 | None:intergenic |
| GTTGTTTGGGAAAGTAGATG+GGG | 0.591431 | 1_2:+5388338 | None:intergenic |
| CGGTTCACGAGGAAGATGAA+TGG | 0.593697 | 1_2:+5389756 | None:intergenic |
| GTCAATACTGCTTCTAATGG+TGG | 0.601970 | 1_2:-5388496 | Msa0051280:CDS |
| CATACAAGTCACACTTTGTG+TGG | 0.602821 | 1_2:-5386419 | Msa0051280:CDS |
| TCTAATGGTGGCGTTGACTG+TGG | 0.604326 | 1_2:-5388484 | Msa0051280:CDS |
| GTCAAGGTTATCGTCAGCAA+AGG | 0.607838 | 1_2:-5387218 | Msa0051280:CDS |
| AAGTTGTTGTTGAAAATTGG+TGG | 0.610802 | 1_2:+5389548 | None:intergenic |
| GTCACACTTTGTGTGGAGGA+TGG | 0.614641 | 1_2:-5386412 | Msa0051280:CDS |
| AGTCTGTCATAGGTCAACCT+AGG | 0.615410 | 1_2:+5389849 | None:intergenic |
| AAAAGTTGAGGTAAATGACT+GGG | 0.616205 | 1_2:+5387180 | None:intergenic |
| AAGGTCCTAGTGGAGCTGTG+TGG | 0.617527 | 1_2:-5388774 | Msa0051280:CDS |
| ATTACGTGTCCGTGTTGCTG+AGG | 0.620142 | 1_2:-5386318 | Msa0051280:CDS |
| ACATGCTCAAACTGAAGAAG+GGG | 0.624407 | 1_2:-5388557 | Msa0051280:CDS |
| AAAAGAAGGTAATTCTCGTG+AGG | 0.624894 | 1_2:-5388242 | Msa0051280:CDS |
| GTGACCCTTAAAGGTCCTAG+TGG | 0.630968 | 1_2:-5388784 | Msa0051280:CDS |
| GAACAACTCACCAGAATACG+TGG | 0.631909 | 1_2:+5387115 | None:intergenic |
| AAAGAAGGTAATTCTCGTGA+GGG | 0.632567 | 1_2:-5388241 | Msa0051280:CDS |
| TTCACGAGGAAGATGAATGG+TGG | 0.634155 | 1_2:+5389759 | None:intergenic |
| CCACAGAGGCAGCACAGTCA+AGG | 0.637815 | 1_2:-5387234 | Msa0051280:intron |
| ATTGGGTTGACAACTAGAGA+TGG | 0.647577 | 1_2:-5388748 | Msa0051280:CDS |
| GTAATTTGAAGGGAGAACAG+TGG | 0.655181 | 1_2:-5386472 | Msa0051280:CDS |
| AAACCCTTTAACGGTTCACG+AGG | 0.657561 | 1_2:+5389745 | None:intergenic |
| AGTGATGATACAGCTAATTG+GGG | 0.658407 | 1_2:+5386083 | None:intergenic |
| GGTACTGTTTACTTCGTGGG+CGG | 0.659429 | 1_2:-5388727 | Msa0051280:CDS |
| TTGTCTATATAACATTCCGT+AGG | 0.662376 | 1_2:-5385980 | Msa0051280:three_prime_UTR |
| CTTCGTCGACCTCAGCAACA+CGG | 0.662749 | 1_2:+5386309 | None:intergenic |
| CGAAGACGGGCTAGTCTCCG+AGG | 0.666474 | 1_2:-5386291 | Msa0051280:CDS |
| TGCGCTATGGAAAATTGATG+GGG | 0.667850 | 1_2:+5386527 | None:intergenic |
| ACAAGTCACACTTTGTGTGG+AGG | 0.672770 | 1_2:-5386416 | Msa0051280:CDS |
| GTAGATGGGGAGTTCCTTAG+GGG | 0.675019 | 1_2:+5388351 | None:intergenic |
| CATGCTCAAACTGAAGAAGG+GGG | 0.720080 | 1_2:-5388556 | Msa0051280:CDS |
| CCTGGCCAGACTAAGAAGCG+AGG | 0.722966 | 1_2:-5388274 | Msa0051280:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAATGTAGTAAAATTTAA+TGG | + | chr1_2:5387658-5387677 | None:intergenic | 10.0% |
| !!! | TTGATTATTTTAACAAAATA+TGG | + | chr1_2:5388660-5388679 | None:intergenic | 10.0% |
| !! | ACAAAAATTAAACCTTTATA+AGG | - | chr1_2:5386337-5386356 | Msa0051280:CDS | 15.0% |
| !! | AGATACAAAATTTAAAAGAT+GGG | + | chr1_2:5386405-5386424 | None:intergenic | 15.0% |
| !! | AAGATACAAAATTTAAAAGA+TGG | + | chr1_2:5386406-5386425 | None:intergenic | 15.0% |
| !! | TATACTATATGTTCAAAATA+TGG | + | chr1_2:5386518-5386537 | None:intergenic | 15.0% |
| !!! | ATTAATTATGTTTAGCTTTT+AGG | - | chr1_2:5386670-5386689 | Msa0051280:intron | 15.0% |
| !!! | ACTTTTCAAAAACAAAATTA+AGG | - | chr1_2:5386745-5386764 | Msa0051280:intron | 15.0% |
| !!! | CTTTTCAAAAACAAAATTAA+GGG | - | chr1_2:5386746-5386765 | Msa0051280:intron | 15.0% |
| !!! | TTTTCAAAAACAAAATTAAG+GGG | - | chr1_2:5386747-5386766 | Msa0051280:intron | 15.0% |
| !! | GAAGTTTATATATAATGTAT+TGG | - | chr1_2:5388055-5388074 | Msa0051280:intron | 15.0% |
| !!! | AATCATGAGTTTAAAATAAA+AGG | + | chr1_2:5388547-5388566 | None:intergenic | 15.0% |
| !! | AAAAAACTAACAATTACAAT+TGG | + | chr1_2:5389128-5389147 | None:intergenic | 15.0% |
| !!! | TTTTAAGAAATTGAGTGAAA+TGG | + | chr1_2:5386243-5386262 | None:intergenic | 20.0% |
| !! | AAAAAGAGAAAAAGAATGAA+GGG | + | chr1_2:5386301-5386320 | None:intergenic | 20.0% |
| !! | TAAAAAGAGAAAAAGAATGA+AGG | + | chr1_2:5386302-5386321 | None:intergenic | 20.0% |
| !!! | TTAATTTTTGTTAACATGGA+AGG | + | chr1_2:5386328-5386347 | None:intergenic | 20.0% |
| !!! | AGGTTTAATTTTTGTTAACA+TGG | + | chr1_2:5386332-5386351 | None:intergenic | 20.0% |
| !!! | TTTATAAGGTTTTCATACTT+GGG | - | chr1_2:5386351-5386370 | Msa0051280:CDS | 20.0% |
| !!! | ATATGCTTGTTTTTACATAA+TGG | - | chr1_2:5386545-5386564 | Msa0051280:intron | 20.0% |
| !! | TTTCAAAAACAAAATTAAGG+GGG | - | chr1_2:5386748-5386767 | Msa0051280:intron | 20.0% |
| !! | TCAAGCAAATTATTATCTTT+AGG | - | chr1_2:5386901-5386920 | Msa0051280:intron | 20.0% |
| !!! | AAATTGTCTGAAAATGTTTT+AGG | + | chr1_2:5386988-5387007 | None:intergenic | 20.0% |
| !!! | TCTTATTTTGTTAGAAAATG+TGG | - | chr1_2:5387234-5387253 | Msa0051280:intron | 20.0% |
| !! | ACAAATTTGACAAAAAAAAC+TGG | + | chr1_2:5387977-5387996 | None:intergenic | 20.0% |
| !! | TAAAATAAAAGGATAATCTC+TGG | + | chr1_2:5388536-5388555 | None:intergenic | 20.0% |
| !! | GTAAATTAAGAATCACAAAA+GGG | + | chr1_2:5388724-5388743 | None:intergenic | 20.0% |
| !! | GAGATAAAACAACATTATTT+GGG | + | chr1_2:5388749-5388768 | None:intergenic | 20.0% |
| !! | AGAGATAAAACAACATTATT+TGG | + | chr1_2:5388750-5388769 | None:intergenic | 20.0% |
| !!! | ACAGGAAATATTAACTTTTA+AGG | + | chr1_2:5389152-5389171 | None:intergenic | 20.0% |
| !! | ATTTCCTGTATTAAGTTTAT+TGG | - | chr1_2:5389163-5389182 | Msa0051280:intron | 20.0% |
| !! | ATTATTCTTCGTAATTTGAA+GGG | - | chr1_2:5389332-5389351 | Msa0051280:intron | 20.0% |
| !!! | AAAGTATTGATCATCAAAAT+GGG | - | chr1_2:5389555-5389574 | Msa0051280:CDS | 20.0% |
| !!! | ATTCTTAGTATATGTTTTAG+AGG | - | chr1_2:5389696-5389715 | Msa0051280:five_prime_UTR | 20.0% |
| !! | TACAAGTTGTTGTTGAAAAT+TGG | + | chr1_2:5386272-5386291 | None:intergenic | 25.0% |
| ! | CAAGTATGAAAACCTTATAA+AGG | + | chr1_2:5386352-5386371 | None:intergenic | 25.0% |
| !! | CTTTATAAGGTTTTCATACT+TGG | - | chr1_2:5386350-5386369 | Msa0051280:CDS | 25.0% |
| !!! | AGTTTTCAGCTTTTGATTAT+TGG | - | chr1_2:5386465-5386484 | Msa0051280:CDS | 25.0% |
| !!! | TTGTTTTTACATAATGGCTT+AGG | - | chr1_2:5386551-5386570 | Msa0051280:intron | 25.0% |
| !!! | GGAAATTATATTTTAACTGC+AGG | - | chr1_2:5386957-5386976 | Msa0051280:intron | 25.0% |
| !!! | TTTGAGGTTTTAATCTTTGA+TGG | - | chr1_2:5387186-5387205 | Msa0051280:CDS | 25.0% |
| !!! | ATTTTATCAGTAGTTTTGAC+AGG | + | chr1_2:5387414-5387433 | None:intergenic | 25.0% |
| ! | GTTATAGATACTAAATAAGC+TGG | + | chr1_2:5387682-5387701 | None:intergenic | 25.0% |
| !! | GTTTAGTATCGAATTAAGAT+AGG | + | chr1_2:5387828-5387847 | None:intergenic | 25.0% |
| ! | ACATCTAGTATGTATCTATT+TGG | - | chr1_2:5387866-5387885 | Msa0051280:intron | 25.0% |
| ! | AAAATTCATCATAGTGAATC+AGG | + | chr1_2:5387912-5387931 | None:intergenic | 25.0% |
| ! | ATTTGACAAAAAAAACTGGT+TGG | + | chr1_2:5387973-5387992 | None:intergenic | 25.0% |
| ! | TCAAATGACAAAAAGAAAAG+TGG | + | chr1_2:5388008-5388027 | None:intergenic | 25.0% |
| ! | AAAATGACATACTTTCTGAT+AGG | - | chr1_2:5388112-5388131 | Msa0051280:intron | 25.0% |
| ! | AACAAAATATGGAAAAGTTG+AGG | + | chr1_2:5388649-5388668 | None:intergenic | 25.0% |
| ! | GGTAAATTAAGAATCACAAA+AGG | + | chr1_2:5388725-5388744 | None:intergenic | 25.0% |
| ! | ATAAAACAACATTATTTGGG+AGG | + | chr1_2:5388746-5388765 | None:intergenic | 25.0% |
| ! | AAGTTACTTAAAGATAGAGA+CGG | + | chr1_2:5388773-5388792 | None:intergenic | 25.0% |
| ! | GATTATTCTTCGTAATTTGA+AGG | - | chr1_2:5389331-5389350 | Msa0051280:intron | 25.0% |
| !!! | GAAAGTATTGATCATCAAAA+TGG | - | chr1_2:5389554-5389573 | Msa0051280:CDS | 25.0% |
| ! | CATGAATTATGATGATACAT+TGG | + | chr1_2:5389665-5389684 | None:intergenic | 25.0% |
| !! | CATTCATTTTAGTCTGTCAT+AGG | + | chr1_2:5385978-5385997 | None:intergenic | 30.0% |
| ! | AAAAAGGAAAGAAGGGTATA+GGG | + | chr1_2:5386099-5386118 | None:intergenic | 30.0% |
| !!! | TTTTGGTTTGAGGAAGAAAA+AGG | + | chr1_2:5386115-5386134 | None:intergenic | 30.0% |
| ! | AAGTTGTTGTTGAAAATTGG+TGG | + | chr1_2:5386269-5386288 | None:intergenic | 30.0% |
| ATAGAACTAACTGCAGTTAA+AGG | + | chr1_2:5386438-5386457 | None:intergenic | 30.0% | |
| !! | TAAGGGGGAAATTTTGATAT+TGG | - | chr1_2:5386763-5386782 | Msa0051280:intron | 30.0% |
| ! | ACGTATCTTTTAATCTCAGA+TGG | - | chr1_2:5386936-5386955 | Msa0051280:intron | 30.0% |
| TTCCTTGTCTTTAAGTACAA+CGG | - | chr1_2:5387153-5387172 | Msa0051280:CDS | 30.0% | |
| TCTATAACTTTCTGATGTCA+TGG | - | chr1_2:5387694-5387713 | Msa0051280:intron | 30.0% | |
| TCCTGTGTATCTATAAAAAG+GGG | + | chr1_2:5387803-5387822 | None:intergenic | 30.0% | |
| CTCCTGTGTATCTATAAAAA+GGG | + | chr1_2:5387804-5387823 | None:intergenic | 30.0% | |
| ACTCCTGTGTATCTATAAAA+AGG | + | chr1_2:5387805-5387824 | None:intergenic | 30.0% | |
| TATGTCATCTGCTAAAGTTA+AGG | + | chr1_2:5388139-5388158 | None:intergenic | 30.0% | |
| TTAACTTTAGCAGATGACAT+AGG | - | chr1_2:5388138-5388157 | Msa0051280:intron | 30.0% | |
| ACATAAACTGCCTACAATTT+GGG | + | chr1_2:5388186-5388205 | None:intergenic | 30.0% | |
| !! | GGAAGAATCATTGTTTTGTT+TGG | - | chr1_2:5388307-5388326 | Msa0051280:CDS | 30.0% |
| AAAAGTTGAGGTAAATGACT+GGG | + | chr1_2:5388637-5388656 | None:intergenic | 30.0% | |
| ATCAAAACATTCAATGTCGA+TGG | - | chr1_2:5388675-5388694 | Msa0051280:CDS | 30.0% | |
| ! | AGCATTTCTCCTTTTATGTA+TGG | - | chr1_2:5388836-5388855 | Msa0051280:CDS | 30.0% |
| ! | ATTTCTCCTTTTATGTATGG+AGG | - | chr1_2:5388839-5388858 | Msa0051280:intron | 30.0% |
| ! | TCATTGAAATCGTCTTTTAC+TGG | + | chr1_2:5388905-5388924 | None:intergenic | 30.0% |
| ! | GATTGACTCATAAATTAGGA+TGG | + | chr1_2:5388945-5388964 | None:intergenic | 30.0% |
| ! | CCAAGATTGACTCATAAATT+AGG | + | chr1_2:5388949-5388968 | None:intergenic | 30.0% |
| CCTAATTTATGAGTCAATCT+TGG | - | chr1_2:5388946-5388965 | Msa0051280:intron | 30.0% | |
| CAATTACAATTGGTACTTCT+TGG | + | chr1_2:5389118-5389137 | None:intergenic | 30.0% | |
| ACGACCAATAAACTTAATAC+AGG | + | chr1_2:5389170-5389189 | None:intergenic | 30.0% | |
| ATAATCTTTATCTTGCCGTT+TGG | + | chr1_2:5389317-5389336 | None:intergenic | 30.0% | |
| ! | ATCTCCAAGCTTTATGTTAT+TGG | + | chr1_2:5389444-5389463 | None:intergenic | 30.0% |
| ! | AATACTTTCCTTTTGAACCT+CGG | + | chr1_2:5389543-5389562 | None:intergenic | 30.0% |
| TAGTGATGATACAGCTAATT+GGG | + | chr1_2:5389735-5389754 | None:intergenic | 30.0% | |
| TTAGTGATGATACAGCTAAT+TGG | + | chr1_2:5389736-5389755 | None:intergenic | 30.0% | |
| TTGTCTATATAACATTCCGT+AGG | - | chr1_2:5389834-5389853 | Msa0051280:five_prime_UTR | 30.0% | |
| !! | TAGGGCTTTAAACCCTTTAA+CGG | + | chr1_2:5386081-5386100 | None:intergenic | 35.0% |
| ! | GAAAAAGGAAAGAAGGGTAT+AGG | + | chr1_2:5386100-5386119 | None:intergenic | 35.0% |
| GAGGAAGAAAAAGGAAAGAA+GGG | + | chr1_2:5386106-5386125 | None:intergenic | 35.0% | |
| TGAGGAAGAAAAAGGAAAGA+AGG | + | chr1_2:5386107-5386126 | None:intergenic | 35.0% | |
| ! | GTTCAAAGTTGCAAGCTTTT+TGG | + | chr1_2:5386132-5386151 | None:intergenic | 35.0% |
| ! | CTGTTTGAAATGGAAGTAGA+TGG | - | chr1_2:5386169-5386188 | Msa0051280:three_prime_UTR | 35.0% |
| CTTGGGAAGAAGATATTTAC+TGG | - | chr1_2:5386200-5386219 | Msa0051280:three_prime_UTR | 35.0% | |
| TTTATTATTCCTTTCCTGCC+TGG | - | chr1_2:5386693-5386712 | Msa0051280:intron | 35.0% | |
| GATTTGAACCTTGAAGATTG+AGG | - | chr1_2:5386808-5386827 | Msa0051280:intron | 35.0% | |
| TGTTGTAACCTCAATCTTCA+AGG | + | chr1_2:5386819-5386838 | None:intergenic | 35.0% | |
| ACATGATTCACATACACTTG+AGG | + | chr1_2:5386853-5386872 | None:intergenic | 35.0% | |
| AAGAACACAAACACATCTGT+TGG | - | chr1_2:5387291-5387310 | Msa0051280:intron | 35.0% | |
| GAAGTCAATACTGCTTCTAA+TGG | - | chr1_2:5387315-5387334 | Msa0051280:intron | 35.0% | |
| ! | TCACGAGAATTACCTTCTTT+TGG | + | chr1_2:5387573-5387592 | None:intergenic | 35.0% |
| AAAAGAAGGTAATTCTCGTG+AGG | - | chr1_2:5387572-5387591 | Msa0051280:intron | 35.0% | |
| AAAGAAGGTAATTCTCGTGA+GGG | - | chr1_2:5387573-5387592 | Msa0051280:intron | 35.0% | |
| ! | ACTAGTTTGTGCAATGAACA+TGG | + | chr1_2:5387775-5387794 | None:intergenic | 35.0% |
| ! | TCCCCTTTTTATAGATACAC+AGG | - | chr1_2:5387799-5387818 | Msa0051280:intron | 35.0% |
| ACTAGATGTTCGCATCAATT+GGG | + | chr1_2:5387855-5387874 | None:intergenic | 35.0% | |
| TACTAGATGTTCGCATCAAT+TGG | + | chr1_2:5387856-5387875 | None:intergenic | 35.0% | |
| CACATAAACTGCCTACAATT+TGG | + | chr1_2:5388187-5388206 | None:intergenic | 35.0% | |
| AATTGTAGGCAGTTTATGTG+AGG | - | chr1_2:5388187-5388206 | Msa0051280:intron | 35.0% | |
| AGTGAAAAGACACTATTCTC+TGG | + | chr1_2:5388333-5388352 | None:intergenic | 35.0% | |
| CGAGAAATTAAAGAGAAACC+GGG | + | chr1_2:5388424-5388443 | None:intergenic | 35.0% | |
| GCGAGAAATTAAAGAGAAAC+CGG | + | chr1_2:5388425-5388444 | None:intergenic | 35.0% | |
| TGAATTGTTCAATTCCACAG+AGG | - | chr1_2:5388566-5388585 | Msa0051280:CDS | 35.0% | |
| GAAAAGTTGAGGTAAATGAC+TGG | + | chr1_2:5388638-5388657 | None:intergenic | 35.0% | |
| TACCATCCTCCATACATAAA+AGG | + | chr1_2:5388848-5388867 | None:intergenic | 35.0% | |
| AGTAGTTGAGAAGTTTGTCA+AGG | + | chr1_2:5389045-5389064 | None:intergenic | 35.0% | |
| TAATGCCAAGCACATTGAAT+GGG | + | chr1_2:5389215-5389234 | None:intergenic | 35.0% | |
| TTAATGCCAAGCACATTGAA+TGG | + | chr1_2:5389216-5389235 | None:intergenic | 35.0% | |
| ATGCGCTATGGAAAATTGAT+GGG | + | chr1_2:5389291-5389310 | None:intergenic | 35.0% | |
| CAAGAATGTTAGCAAGTAGA+TGG | + | chr1_2:5389618-5389637 | None:intergenic | 35.0% | |
| AGTGATGATACAGCTAATTG+GGG | + | chr1_2:5389734-5389753 | None:intergenic | 35.0% | |
| !!! | GTTGCAAGCTTTTTGGTTTG+AGG | + | chr1_2:5386125-5386144 | None:intergenic | 40.0% |
| AACAGAAGCAGAGAGTGAAA+TGG | + | chr1_2:5386154-5386173 | None:intergenic | 40.0% | |
| CTCTCTGCTTCTGTTTGAAA+TGG | - | chr1_2:5386159-5386178 | Msa0051280:three_prime_UTR | 40.0% | |
| AAGTAGATGGAAGCAGATCT+TGG | - | chr1_2:5386182-5386201 | Msa0051280:three_prime_UTR | 40.0% | |
| AGTAGATGGAAGCAGATCTT+GGG | - | chr1_2:5386183-5386202 | Msa0051280:three_prime_UTR | 40.0% | |
| TAGATAGTGTTTGCAGAACC+AGG | + | chr1_2:5386714-5386733 | None:intergenic | 40.0% | |
| !! | CCTTTAAGGGTCACATTTTC+TGG | + | chr1_2:5387024-5387043 | None:intergenic | 40.0% |
| CCAGAAAATGTGACCCTTAA+AGG | - | chr1_2:5387021-5387040 | Msa0051280:intron | 40.0% | |
| !! | ATTGGGTTGACAACTAGAGA+TGG | - | chr1_2:5387066-5387085 | Msa0051280:intron | 40.0% |
| AGATGGTACTGTTTACTTCG+TGG | - | chr1_2:5387083-5387102 | Msa0051280:intron | 40.0% | |
| GATGGTACTGTTTACTTCGT+GGG | - | chr1_2:5387084-5387103 | Msa0051280:intron | 40.0% | |
| CACCGTTGTACTTAAAGACA+AGG | + | chr1_2:5387158-5387177 | None:intergenic | 40.0% | |
| ! | TGGAGTTAGTTTCTGTGAGA+AGG | - | chr1_2:5387206-5387225 | Msa0051280:CDS | 40.0% |
| GACATGCTCAAACTGAAGAA+GGG | - | chr1_2:5387256-5387275 | Msa0051280:intron | 40.0% | |
| ACATGCTCAAACTGAAGAAG+GGG | - | chr1_2:5387257-5387276 | Msa0051280:intron | 40.0% | |
| GTCAATACTGCTTCTAATGG+TGG | - | chr1_2:5387318-5387337 | Msa0051280:intron | 40.0% | |
| !! | GTTTTGACAGGTACAGCTAA+TGG | + | chr1_2:5387402-5387421 | None:intergenic | 40.0% |
| TATTGAATCTGCTTCCCCTA+AGG | - | chr1_2:5387449-5387468 | Msa0051280:intron | 40.0% | |
| GTTGTTTGGGAAAGTAGATG+GGG | + | chr1_2:5387479-5387498 | None:intergenic | 40.0% | |
| GGTTGTTTGGGAAAGTAGAT+GGG | + | chr1_2:5387480-5387499 | None:intergenic | 40.0% | |
| TGGTTGTTTGGGAAAGTAGA+TGG | + | chr1_2:5387481-5387500 | None:intergenic | 40.0% | |
| TACTTTCCCAAACAACCAAC+CGG | - | chr1_2:5387483-5387502 | Msa0051280:intron | 40.0% | |
| ! | AACTTCATTAGCTGGCTTCT+TGG | + | chr1_2:5387517-5387536 | None:intergenic | 40.0% |
| ! | CGAGAATTACCTTCTTTTGG+CGG | + | chr1_2:5387570-5387589 | None:intergenic | 40.0% |
| TGATTTGAGGGCTTCTAACA+AGG | - | chr1_2:5387602-5387621 | Msa0051280:intron | 40.0% | |
| AGGGAATAAGCCCAAATTGT+AGG | - | chr1_2:5388173-5388192 | Msa0051280:intron | 40.0% | |
| AGAAACAGTAACAGAGAGGA+GGG | - | chr1_2:5388210-5388229 | Msa0051280:CDS | 40.0% | |
| !! | GAGAATTAGTGGATTGCTTG+AGG | - | chr1_2:5388238-5388257 | Msa0051280:CDS | 40.0% |
| !! | TAGTGGATTGCTTGAGGATT+CGG | - | chr1_2:5388244-5388263 | Msa0051280:CDS | 40.0% |
| ! | CTTGAGGATTCGGTTATATG+AGG | - | chr1_2:5388254-5388273 | Msa0051280:CDS | 40.0% |
| ! | AGGATTCGGTTATATGAGGT+GGG | - | chr1_2:5388258-5388277 | Msa0051280:CDS | 40.0% |
| !! | TGTGTAGAGCATTGCTCTTT+GGG | - | chr1_2:5388352-5388371 | Msa0051280:CDS | 40.0% |
| TAGCAATCTGACACTTGTCA+AGG | - | chr1_2:5388475-5388494 | Msa0051280:CDS | 40.0% | |
| ! | CTCCTTTTATGTATGGAGGA+TGG | - | chr1_2:5388843-5388862 | Msa0051280:intron | 40.0% |
| TTCATCCCATTCAATGTGCT+TGG | - | chr1_2:5389207-5389226 | Msa0051280:intron | 40.0% | |
| TGCGCTATGGAAAATTGATG+GGG | + | chr1_2:5389290-5389309 | None:intergenic | 40.0% | |
| GATGCGCTATGGAAAATTGA+TGG | + | chr1_2:5389292-5389311 | None:intergenic | 40.0% | |
| GTAATTTGAAGGGAGAACAG+TGG | - | chr1_2:5389342-5389361 | Msa0051280:intron | 40.0% | |
| CTTGTATGCACTCTACTTCT+AGG | + | chr1_2:5389383-5389402 | None:intergenic | 40.0% | |
| CATACAAGTCACACTTTGTG+TGG | - | chr1_2:5389395-5389414 | Msa0051280:intron | 40.0% | |
| CGTGCCAATAACATAAAGCT+TGG | - | chr1_2:5389437-5389456 | Msa0051280:intron | 40.0% | |
| AGTCTGTCATAGGTCAACCT+AGG | + | chr1_2:5385968-5385987 | None:intergenic | 45.0% | |
| TTCACGAGGAAGATGAATGG+TGG | + | chr1_2:5386058-5386077 | None:intergenic | 45.0% | |
| TCTTCCTCGTGAACCGTTAA+AGG | - | chr1_2:5386065-5386084 | Msa0051280:three_prime_UTR | 45.0% | |
| CTTCCTCGTGAACCGTTAAA+GGG | - | chr1_2:5386066-5386085 | Msa0051280:three_prime_UTR | 45.0% | |
| AAACCCTTTAACGGTTCACG+AGG | + | chr1_2:5386072-5386091 | None:intergenic | 45.0% | |
| TTCAAGGTTCAAATCCCCTC+GGG | + | chr1_2:5386803-5386822 | None:intergenic | 45.0% | |
| CTTCAAGGTTCAAATCCCCT+CGG | + | chr1_2:5386804-5386823 | None:intergenic | 45.0% | |
| AGCTCCACTAGGACCTTTAA+GGG | + | chr1_2:5387037-5387056 | None:intergenic | 45.0% | |
| CAACGGTGAATCTCTCTTTG+AGG | - | chr1_2:5387170-5387189 | Msa0051280:CDS | 45.0% | |
| GGACATGCTCAAACTGAAGA+AGG | - | chr1_2:5387255-5387274 | Msa0051280:intron | 45.0% | |
| CATGCTCAAACTGAAGAAGG+GGG | - | chr1_2:5387258-5387277 | Msa0051280:intron | 45.0% | |
| GTGGTTCACCTGAGAGATTT+CGG | - | chr1_2:5387349-5387368 | Msa0051280:intron | 45.0% | |
| TGGTTCACCTGAGAGATTTC+GGG | - | chr1_2:5387350-5387369 | Msa0051280:intron | 45.0% | |
| AGTAGATGGGGAGTTCCTTA+GGG | + | chr1_2:5387467-5387486 | None:intergenic | 45.0% | |
| AAGTAGATGGGGAGTTCCTT+AGG | + | chr1_2:5387468-5387487 | None:intergenic | 45.0% | |
| CCAGGTGTAACTTCATTAGC+TGG | + | chr1_2:5387525-5387544 | None:intergenic | 45.0% | |
| CCAGCTAATGAAGTTACACC+TGG | - | chr1_2:5387522-5387541 | Msa0051280:intron | 45.0% | |
| !! | TGAGGGAGCACTTGATTTGA+GGG | - | chr1_2:5387590-5387609 | Msa0051280:intron | 45.0% |
| GCTTCTAACAAGGAACTCTC+AGG | - | chr1_2:5387612-5387631 | Msa0051280:intron | 45.0% | |
| ! | TGGTTGGCTACTCTGAGTTT+AGG | + | chr1_2:5387957-5387976 | None:intergenic | 45.0% |
| ACATAGGCCTGAGTGACAAA+GGG | - | chr1_2:5388154-5388173 | Msa0051280:intron | 45.0% | |
| GCTTATTCCCTTTGTCACTC+AGG | + | chr1_2:5388164-5388183 | None:intergenic | 45.0% | |
| GAGGAGAAACAGTAACAGAG+AGG | - | chr1_2:5388206-5388225 | Msa0051280:CDS | 45.0% | |
| GAGAAACAGTAACAGAGAGG+AGG | - | chr1_2:5388209-5388228 | Msa0051280:CDS | 45.0% | |
| GGAGGGAAAGTGAGAATTAG+TGG | - | chr1_2:5388227-5388246 | Msa0051280:CDS | 45.0% | |
| ! | GAGGATTCGGTTATATGAGG+TGG | - | chr1_2:5388257-5388276 | Msa0051280:CDS | 45.0% |
| GTTATATGAGGTGGGAGTTG+TGG | - | chr1_2:5388266-5388285 | Msa0051280:CDS | 45.0% | |
| !! | CTGTGTAGAGCATTGCTCTT+TGG | - | chr1_2:5388351-5388370 | Msa0051280:CDS | 45.0% |
| GAGAAACCGGGAATTGCAAA+TGG | + | chr1_2:5388412-5388431 | None:intergenic | 45.0% | |
| GTCAAGGTTATCGTCAGCAA+AGG | - | chr1_2:5388596-5388615 | Msa0051280:CDS | 45.0% | |
| GAACAACTCACCAGAATACG+TGG | + | chr1_2:5388702-5388721 | None:intergenic | 45.0% | |
| TGTATGGAGGATGGTAAGCA+TGG | - | chr1_2:5388852-5388871 | Msa0051280:intron | 45.0% | |
| TCCATAGCGCATCTTCCAAA+CGG | - | chr1_2:5389299-5389318 | Msa0051280:intron | 45.0% | |
| ACAAGTCACACTTTGTGTGG+AGG | - | chr1_2:5389398-5389417 | Msa0051280:intron | 45.0% | |
| ACAGCTAATTGGGGTGTGAA+TGG | + | chr1_2:5389725-5389744 | None:intergenic | 45.0% | |
| CGGTTCACGAGGAAGATGAA+TGG | + | chr1_2:5386061-5386080 | None:intergenic | 50.0% | |
| TTTGCAGAACCAGGCAGGAA+AGG | + | chr1_2:5386705-5386724 | None:intergenic | 50.0% | |
| TAGTGTTTGCAGAACCAGGC+AGG | + | chr1_2:5386710-5386729 | None:intergenic | 50.0% | |
| GTGACCCTTAAAGGTCCTAG+TGG | - | chr1_2:5387030-5387049 | Msa0051280:intron | 50.0% | |
| CAGCTCCACTAGGACCTTTA+AGG | + | chr1_2:5387038-5387057 | None:intergenic | 50.0% | |
| ATATCCCACACAGCTCCACT+AGG | + | chr1_2:5387048-5387067 | None:intergenic | 50.0% | |
| AGTGGAGCTGTGTGGGATAT+TGG | - | chr1_2:5387048-5387067 | Msa0051280:intron | 50.0% | |
| GTGGAGCTGTGTGGGATATT+GGG | - | chr1_2:5387049-5387068 | Msa0051280:intron | 50.0% | |
| GGTACTGTTTACTTCGTGGG+CGG | - | chr1_2:5387087-5387106 | Msa0051280:intron | 50.0% | |
| TGTTTACTTCGTGGGCGGTT+GGG | - | chr1_2:5387092-5387111 | Msa0051280:intron | 50.0% | |
| AACTGAAGAAGGGGGTAGCA+AGG | - | chr1_2:5387266-5387285 | Msa0051280:intron | 50.0% | |
| !! | TCTAATGGTGGCGTTGACTG+TGG | - | chr1_2:5387330-5387349 | Msa0051280:intron | 50.0% |
| !! | CACCTGAGAGATTTCGGGTT+CGG | - | chr1_2:5387355-5387374 | Msa0051280:intron | 50.0% |
| GTAGATGGGGAGTTCCTTAG+GGG | + | chr1_2:5387466-5387485 | None:intergenic | 50.0% | |
| ! | CTTTGGCCGGTTGGTTGTTT+GGG | + | chr1_2:5387492-5387511 | None:intergenic | 50.0% |
| ! | TAGCTGGCTTCTTGGTCCTT+TGG | + | chr1_2:5387509-5387528 | None:intergenic | 50.0% |
| GTCTTCCTCGCTTCTTAGTC+TGG | + | chr1_2:5387548-5387567 | None:intergenic | 50.0% | |
| !! | GTGAGGGAGCACTTGATTTG+AGG | - | chr1_2:5387589-5387608 | Msa0051280:intron | 50.0% |
| GACATAGGCCTGAGTGACAA+AGG | - | chr1_2:5388153-5388172 | Msa0051280:intron | 50.0% | |
| AGCATTGCTCTTTGGGCTGT+AGG | - | chr1_2:5388359-5388378 | Msa0051280:CDS | 50.0% | |
| GCATTGCTCTTTGGGCTGTA+GGG | - | chr1_2:5388360-5388379 | Msa0051280:CDS | 50.0% | |
| CGCGTTCCATTTGCAATTCC+CGG | - | chr1_2:5388403-5388422 | Msa0051280:CDS | 50.0% | |
| TGTCGATGGTCCACGTATTC+TGG | - | chr1_2:5388689-5388708 | Msa0051280:CDS | 50.0% | |
| GTCACACTTTGTGTGGAGGA+TGG | - | chr1_2:5389402-5389421 | Msa0051280:intron | 50.0% | |
| ! | ATTACGTGTCCGTGTTGCTG+AGG | - | chr1_2:5389496-5389515 | Msa0051280:intron | 50.0% |
| ! | GCTAGTCTCCGAGGTTCAAA+AGG | - | chr1_2:5389532-5389551 | Msa0051280:intron | 50.0% |
| !! | GCCATTTTCAACCGTCCCGA+GGG | - | chr1_2:5386785-5386804 | Msa0051280:intron | 55.0% |
| ! | CCATTTTCAACCGTCCCGAG+GGG | - | chr1_2:5386786-5386805 | Msa0051280:intron | 55.0% |
| AGGTTCAAATCCCCTCGGGA+CGG | + | chr1_2:5386799-5386818 | None:intergenic | 55.0% | |
| AAGGTCCTAGTGGAGCTGTG+TGG | - | chr1_2:5387040-5387059 | Msa0051280:intron | 55.0% | |
| AGGTCCTAGTGGAGCTGTGT+GGG | - | chr1_2:5387041-5387060 | Msa0051280:intron | 55.0% | |
| CTGTTTACTTCGTGGGCGGT+TGG | - | chr1_2:5387091-5387110 | Msa0051280:intron | 55.0% | |
| ! | CCTTTGGCCGGTTGGTTGTT+TGG | + | chr1_2:5387493-5387512 | None:intergenic | 55.0% |
| CCAAACAACCAACCGGCCAA+AGG | - | chr1_2:5387490-5387509 | Msa0051280:intron | 55.0% | |
| TTCTTGGTCCTTTGGCCGGT+TGG | + | chr1_2:5387501-5387520 | None:intergenic | 55.0% | |
| TGGCTTCTTGGTCCTTTGGC+CGG | + | chr1_2:5387505-5387524 | None:intergenic | 55.0% | |
| CGAGGAAGACCGCCAAAAGA+AGG | - | chr1_2:5387558-5387577 | Msa0051280:intron | 55.0% | |
| ATGAGGTGGGAGTTGTGGAG+AGG | - | chr1_2:5388271-5388290 | Msa0051280:CDS | 55.0% | |
| TGGGAGTTGTGGAGAGGAAG+AGG | - | chr1_2:5388277-5388296 | Msa0051280:CDS | 55.0% | |
| GGGAGTTGTGGAGAGGAAGA+GGG | - | chr1_2:5388278-5388297 | Msa0051280:CDS | 55.0% | |
| GCCGTTTGGAAGATGCGCTA+TGG | + | chr1_2:5389303-5389322 | None:intergenic | 55.0% | |
| CTTCGTCGACCTCAGCAACA+CGG | + | chr1_2:5389508-5389527 | None:intergenic | 55.0% | |
| GTTGCTGAGGTCGACGAAGA+CGG | - | chr1_2:5389509-5389528 | Msa0051280:intron | 55.0% | |
| TTGCTGAGGTCGACGAAGAC+GGG | - | chr1_2:5389510-5389529 | Msa0051280:intron | 55.0% | |
| !! | GGCCATTTTCAACCGTCCCG+AGG | - | chr1_2:5386784-5386803 | Msa0051280:intron | 60.0% |
| CCCCTCGGGACGGTTGAAAA+TGG | + | chr1_2:5386789-5386808 | None:intergenic | 60.0% | |
| CGCCGAACCCGAAATCTCTC+AGG | + | chr1_2:5387360-5387379 | None:intergenic | 60.0% | |
| CCTCGCTTCTTAGTCTGGCC+AGG | + | chr1_2:5387543-5387562 | None:intergenic | 60.0% | |
| CCTGGCCAGACTAAGAAGCG+AGG | - | chr1_2:5387540-5387559 | Msa0051280:intron | 60.0% | |
| !! | TGGAGAGGAAGAGGGCATCG+AGG | - | chr1_2:5388286-5388305 | Msa0051280:CDS | 60.0% |
| CCTTGACTGTGCTGCCTCTG+TGG | + | chr1_2:5388583-5388602 | None:intergenic | 60.0% | |
| CCACAGAGGCAGCACAGTCA+AGG | - | chr1_2:5388580-5388599 | Msa0051280:CDS | 60.0% | |
| !! | CGAAGACGGGCTAGTCTCCG+AGG | - | chr1_2:5389523-5389542 | Msa0051280:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 5385965 | 5389871 | 5385965 | ID=Msa0051280;Name=Msa0051280 |
| chr1_2 | mRNA | 5385965 | 5389871 | 5385965 | ID=Msa0051280-mRNA-1;Parent=Msa0051280;Name=Msa0051280-mRNA-1;_AED=0.33;_eAED=0.33;_QI=213|1|1|1|1|1|4|279|400 |
| chr1_2 | exon | 5385965 | 5386555 | 5385965 | ID=Msa0051280-mRNA-1:exon:1603;Parent=Msa0051280-mRNA-1 |
| chr1_2 | exon | 5387126 | 5387250 | 5387126 | ID=Msa0051280-mRNA-1:exon:1602;Parent=Msa0051280-mRNA-1 |
| chr1_2 | exon | 5388203 | 5388857 | 5388203 | ID=Msa0051280-mRNA-1:exon:1601;Parent=Msa0051280-mRNA-1 |
| chr1_2 | exon | 5389548 | 5389871 | 5389548 | ID=Msa0051280-mRNA-1:exon:1600;Parent=Msa0051280-mRNA-1 |
| chr1_2 | five_prime_UTR | 5389659 | 5389871 | 5389659 | ID=Msa0051280-mRNA-1:five_prime_utr;Parent=Msa0051280-mRNA-1 |
| chr1_2 | CDS | 5389548 | 5389658 | 5389548 | ID=Msa0051280-mRNA-1:cds;Parent=Msa0051280-mRNA-1 |
| chr1_2 | CDS | 5388203 | 5388857 | 5388203 | ID=Msa0051280-mRNA-1:cds;Parent=Msa0051280-mRNA-1 |
| chr1_2 | CDS | 5387126 | 5387250 | 5387126 | ID=Msa0051280-mRNA-1:cds;Parent=Msa0051280-mRNA-1 |
| chr1_2 | CDS | 5386244 | 5386555 | 5386244 | ID=Msa0051280-mRNA-1:cds;Parent=Msa0051280-mRNA-1 |
| chr1_2 | three_prime_UTR | 5385965 | 5386243 | 5385965 | ID=Msa0051280-mRNA-1:three_prime_utr;Parent=Msa0051280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
