Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002730 | Msa0006640 | 0.854294 | 1.354379e-61 | -8.615850e-47 |
| Msa0002730 | Msa0101130 | 0.909732 | 4.113375e-82 | -8.615850e-47 |
| Msa0002730 | Msa0148790 | 0.912514 | 1.785244e-83 | -8.615850e-47 |
| Msa0002730 | Msa0768810 | 0.829004 | 6.558297e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0002730 | MtrunA17_Chr1g0149461 | 95.728 | 515 | 22 | 0 | 1 | 515 | 1 | 515 | 0.0 | 956 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0002730 | AT4G32190.1 | 45.221 | 544 | 278 | 7 | 1 | 529 | 1 | 539 | 7.35e-104 | 329 |
Find 116 sgRNAs with CRISPR-Local
Find 252 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCTAGCGTGCTATTGTTTC+TGG | 0.076171 | 1_1:+4944456 | Msa0002730:five_prime_UTR |
| CTTGAAGCGAAGCCATTTCT+TGG | 0.183967 | 1_1:-4946683 | None:intergenic |
| TTTCGTTCTCCACTTCTATT+TGG | 0.209735 | 1_1:-4946533 | None:intergenic |
| GAAGAAAGAAAGAGCTTCTT+TGG | 0.211625 | 1_1:+4946650 | Msa0002730:CDS |
| CAAGGTTGCAGAGGCCTCTT+TGG | 0.261894 | 1_1:+4946230 | Msa0002730:CDS |
| GAAGGAGGCGACGGCTAGTT+TGG | 0.320741 | 1_1:+4945894 | Msa0002730:CDS |
| TCGAGAAGCCTAGCAGATTC+TGG | 0.328588 | 1_1:-4945622 | None:intergenic |
| CTTCTTTGCAATAGAATCAT+TGG | 0.330347 | 1_1:+4948533 | Msa0002730:CDS |
| TGCAGTTGTTGTGCTCTCTT+AGG | 0.332854 | 1_1:+4945467 | Msa0002730:intron |
| AGTCATAGCAATAGCGAATA+AGG | 0.335485 | 1_1:-4944513 | None:intergenic |
| TTCGTTCTCCACTTCTATTT+GGG | 0.342748 | 1_1:-4946532 | None:intergenic |
| CAGCTTTAATTTCACTCTCT+TGG | 0.346685 | 1_1:-4945837 | None:intergenic |
| GAGTCACAACAAAATTGATT+TGG | 0.357750 | 1_1:-4945510 | None:intergenic |
| TCTTAAGATCAGAGATTTCC+TGG | 0.358030 | 1_1:-4946893 | None:intergenic |
| GGAGAAGGAGGATCATTTAC+AGG | 0.372000 | 1_1:+4945750 | Msa0002730:CDS |
| AGGAAATGAAGCTCCGGCTT+AGG | 0.372074 | 1_1:+4945938 | Msa0002730:CDS |
| CTCTTCTCCTTCCTACTCTC+AGG | 0.372331 | 1_1:+4944562 | Msa0002730:CDS |
| TGTGCTCTCTTAGGTACAAT+AGG | 0.375275 | 1_1:+4945476 | Msa0002730:CDS |
| AAATTGAGCTTCTAGAATTA+CGG | 0.387513 | 1_1:+4946136 | Msa0002730:CDS |
| GGAAATGAAGCTCCGGCTTA+GGG | 0.388122 | 1_1:+4945939 | Msa0002730:CDS |
| GAAGAAAAGGTCGTTGGTTA+AGG | 0.395609 | 1_1:+4945536 | Msa0002730:CDS |
| ATAGTGAGATTGATGGTTTA+CGG | 0.396914 | 1_1:+4945968 | Msa0002730:CDS |
| GTCTGCGCTCATGGAATTGA+AGG | 0.397775 | 1_1:+4945729 | Msa0002730:CDS |
| GGCTTCTCTTCAGTCTCTCT+TGG | 0.398610 | 1_1:+4946818 | Msa0002730:CDS |
| GAGATGGAGAAAATGAAGAT+TGG | 0.405764 | 1_1:+4946015 | Msa0002730:CDS |
| GGAGGATCATTTACAGGAAG+TGG | 0.406116 | 1_1:+4945756 | Msa0002730:CDS |
| GACTGGAAGAGGAGGCTTCA+AGG | 0.407228 | 1_1:+4946298 | Msa0002730:CDS |
| TAGTGAGATTGATGGTTTAC+GGG | 0.413981 | 1_1:+4945969 | Msa0002730:CDS |
| AGCAATCGCTTGCATCTTCT+AGG | 0.416362 | 1_1:+4946409 | Msa0002730:CDS |
| ACAACATGACACTTTCCCTT+TGG | 0.422560 | 1_1:-4946488 | None:intergenic |
| GGAGAAAATGAAGATTGGTT+TGG | 0.423670 | 1_1:+4946020 | Msa0002730:CDS |
| GAATTCTCAGGTGACGGTCT+TGG | 0.425271 | 1_1:-4944255 | None:intergenic |
| GGAGCAGGCTGTCCAAGAAA+TGG | 0.430948 | 1_1:+4946671 | Msa0002730:CDS |
| AAGTTGGACAACCGGATGAT+AGG | 0.434647 | 1_1:+4945667 | Msa0002730:CDS |
| TTTGAATAAAGAACTCGAAC+AGG | 0.442246 | 1_1:+4946581 | Msa0002730:CDS |
| GCTAGTTTGGTTTCTCAAGC+TGG | 0.442794 | 1_1:+4945907 | Msa0002730:CDS |
| TTCTCTTCAGTCTCTCTTGG+AGG | 0.443922 | 1_1:+4946821 | Msa0002730:CDS |
| GGAGCTTATGAAGAAGTTAC+AGG | 0.444266 | 1_1:+4946620 | Msa0002730:CDS |
| ACGGGATGCGCTGTCTTTGA+AGG | 0.447564 | 1_1:+4945987 | Msa0002730:CDS |
| GATCGTGATAGTGAGATTGA+TGG | 0.456862 | 1_1:+4945961 | Msa0002730:CDS |
| TGATTCTGAGCTTAGACAAA+AGG | 0.457472 | 1_1:+4946071 | Msa0002730:CDS |
| GTGTGAAGAAGCTTCACTTT+GGG | 0.468839 | 1_1:-4948511 | Msa0002740:CDS |
| GTTGTGACTCAAGGAAGAAA+AGG | 0.469931 | 1_1:+4945523 | Msa0002730:CDS |
| CCAGGAATTGAAAACTGAAA+AGG | 0.470099 | 1_1:+4946797 | Msa0002730:CDS |
| GCAAGTACAAGAAGGGTTGT+TGG | 0.471519 | 1_1:+4946440 | Msa0002730:CDS |
| AGAAAGAGCTTCTTTGGAGC+AGG | 0.472671 | 1_1:+4946656 | Msa0002730:CDS |
| ATGGAGGGAGGGAAAAGTTA+TGG | 0.475948 | 1_1:-4944374 | None:intergenic |
| AGAACGAAAGAACAAAACTT+AGG | 0.479483 | 1_1:+4946547 | Msa0002730:CDS |
| GAGGCTTGAAGATGAGATGA+AGG | 0.479878 | 1_1:+4945876 | Msa0002730:CDS |
| AGGGTTGTTGGAACAGCAGC+TGG | 0.480838 | 1_1:+4946452 | Msa0002730:CDS |
| GGCTGAACTTGCAGACCAAA+GGG | 0.481085 | 1_1:+4946473 | Msa0002730:CDS |
| TTCAATATCCCTCGCAGCCA+CGG | 0.482128 | 1_1:-4946196 | None:intergenic |
| AGACACAAAAGTTGGACAAC+CGG | 0.482352 | 1_1:+4945659 | Msa0002730:CDS |
| TTCTCAAGCTGGACAGATAG+AGG | 0.486214 | 1_1:+4945918 | Msa0002730:CDS |
| AGTGTGAAGAAGCTTCACTT+TGG | 0.503173 | 1_1:-4948512 | Msa0002740:CDS |
| TACAAAATGCAAGTACAAGA+AGG | 0.505025 | 1_1:+4946432 | Msa0002730:CDS |
| TGATGCTAAGCTACAAATCC+AGG | 0.506835 | 1_1:+4946779 | Msa0002730:CDS |
| GACTCAAAATCACGAAGATC+TGG | 0.507607 | 1_1:-4945697 | None:intergenic |
| GAGGTAGAAGAAGAATTCTC+AGG | 0.511533 | 1_1:-4944267 | None:intergenic |
| GGAGAAGCATGTTAGTGATA+AGG | 0.513652 | 1_1:-4948561 | Msa0002740:CDS |
| AGAAGCTTCTCAGTGATGTC+AGG | 0.514810 | 1_1:+4946367 | Msa0002730:CDS |
| ACGTCTATCCGTGGCTGCGA+GGG | 0.515242 | 1_1:+4946188 | Msa0002730:CDS |
| CACTATCACGATCCCTAAGC+CGG | 0.519235 | 1_1:-4945951 | None:intergenic |
| GTTTGAGCAGACACAAAAGT+TGG | 0.519353 | 1_1:+4945651 | Msa0002730:CDS |
| GGAGGCTTCAAGGCATGCAC+AGG | 0.519791 | 1_1:+4946308 | Msa0002730:CDS |
| GAACGAAAGAACAAAACTTA+GGG | 0.519943 | 1_1:+4946548 | Msa0002730:CDS |
| ACAAGAGGAACTCAAGAGAC+TGG | 0.522581 | 1_1:+4946281 | Msa0002730:CDS |
| GTCTTTGAAGGAAGAAGAGA+TGG | 0.530883 | 1_1:+4945999 | Msa0002730:CDS |
| TGGCTGAACTTGCAGACCAA+AGG | 0.536581 | 1_1:+4946472 | Msa0002730:CDS |
| ACAGGATTTGTCCGTAGAGA+AGG | 0.537064 | 1_1:+4946599 | Msa0002730:CDS |
| ACTTGGAACTTTCAAGTGCT+AGG | 0.537214 | 1_1:+4946850 | Msa0002730:CDS |
| CTTCATAAGCTCCTTCTCTA+CGG | 0.541192 | 1_1:-4946610 | None:intergenic |
| CTGACTCTTTGACATCAAGA+AGG | 0.541859 | 1_1:-4946749 | None:intergenic |
| CTGGTTCCTCTCCTATCATC+CGG | 0.543300 | 1_1:-4945678 | None:intergenic |
| GGAAAGTGTCATGTTGTACA+TGG | 0.547682 | 1_1:+4946494 | Msa0002730:CDS |
| AAAGCTGAAGGATGCGAAAG+AGG | 0.552340 | 1_1:+4945804 | Msa0002730:CDS |
| AGATAGAGGAAATGAAGCTC+CGG | 0.558398 | 1_1:+4945932 | Msa0002730:CDS |
| TTCAAGTGCTAGGAAGATGC+TGG | 0.563574 | 1_1:+4946860 | Msa0002730:CDS |
| AAAAGATGTCGATGGAGGGA+GGG | 0.568749 | 1_1:-4944385 | None:intergenic |
| GAAAGATGCCCAAATAGAAG+TGG | 0.571824 | 1_1:+4946524 | Msa0002730:CDS |
| GGAACTCAAGAGACTGGAAG+AGG | 0.572397 | 1_1:+4946287 | Msa0002730:CDS |
| CTCAAGGAAGAAAAGGTCGT+TGG | 0.577956 | 1_1:+4945530 | Msa0002730:CDS |
| GAAGTAACAAACCTGAGAGT+AGG | 0.578102 | 1_1:-4944573 | None:intergenic |
| AAACAATAGCACGCTAGCGT+TGG | 0.578954 | 1_1:-4944452 | None:intergenic |
| GTTGGAGAATGGAAAGCTGA+AGG | 0.579685 | 1_1:+4945792 | Msa0002730:CDS |
| GTGCAAAATGCATTTACAGA+AGG | 0.579759 | 1_1:-4944491 | None:intergenic |
| TCTCTTGGAGGAGAAAGACT+TGG | 0.581096 | 1_1:+4946833 | Msa0002730:CDS |
| CTGAGAGTAGGAAGGAGAAG+AGG | 0.586906 | 1_1:-4944561 | None:intergenic |
| GAAGAAGAATTCTCAGGTGA+CGG | 0.591850 | 1_1:-4944261 | None:intergenic |
| AGAAATGGCTTCGCTTCAAG+AGG | 0.591969 | 1_1:+4946686 | Msa0002730:CDS |
| TACGTCTATCCGTGGCTGCG+AGG | 0.593135 | 1_1:+4946187 | Msa0002730:CDS |
| ATGGAGCGCCAGAATCTGCT+AGG | 0.595279 | 1_1:+4945614 | Msa0002730:CDS |
| GTGGCTGCGAGGGATATTGA+AGG | 0.597138 | 1_1:+4946198 | Msa0002730:CDS |
| GCTCCATAATTGTTAAAACT+AGG | 0.598816 | 1_1:-4945598 | None:intergenic |
| ACAAAATGCAAGTACAAGAA+GGG | 0.599552 | 1_1:+4946433 | Msa0002730:CDS |
| GAGTAGGAAGGAGAAGAGGT+AGG | 0.602593 | 1_1:-4944557 | None:intergenic |
| AAAGGTCGTTGGTTAAGGAA+TGG | 0.604287 | 1_1:+4945541 | Msa0002730:CDS |
| GCTCATGGAATTGAAGGAGA+AGG | 0.604339 | 1_1:+4945735 | Msa0002730:CDS |
| ACTCAAGAGACTGGAAGAGG+AGG | 0.605945 | 1_1:+4946290 | Msa0002730:CDS |
| TAACAAACCTGAGAGTAGGA+AGG | 0.606825 | 1_1:-4944569 | None:intergenic |
| TGGAAAAGCACACGATGGAG+TGG | 0.609324 | 1_1:+4946250 | Msa0002730:CDS |
| GGAGTGGTTGTTAACACAAG+AGG | 0.610855 | 1_1:+4946266 | Msa0002730:CDS |
| GAAGCATGTTAGTGATAAGG+TGG | 0.610857 | 1_1:-4948558 | Msa0002740:CDS |
| AGATGAGATGAAGGAGGCGA+CGG | 0.624465 | 1_1:+4945885 | Msa0002730:CDS |
| TGACTCTTTGACATCAAGAA+GGG | 0.625792 | 1_1:-4946748 | None:intergenic |
| GATGCTGGTGGAACTAAACC+AGG | 0.625978 | 1_1:+4946875 | Msa0002730:CDS |
| CATGGAATTGAAGGAGAAGG+AGG | 0.638231 | 1_1:+4945738 | Msa0002730:CDS |
| AAACGCTAGAGAATTTCAGA+AGG | 0.644568 | 1_1:+4946340 | Msa0002730:CDS |
| CTGCTCGCGAGAAGTATGAG+AGG | 0.645894 | 1_1:+4945857 | Msa0002730:CDS |
| AAGTGCTAGGAAGATGCTGG+TGG | 0.655984 | 1_1:+4946863 | Msa0002730:CDS |
| AGAAGAACTACGTCTATCCG+TGG | 0.663326 | 1_1:+4946179 | Msa0002730:CDS |
| GCTTGAAGATGAGATGAAGG+AGG | 0.679304 | 1_1:+4945879 | Msa0002730:CDS |
| GGACAACCGGATGATAGGAG+AGG | 0.688688 | 1_1:+4945672 | Msa0002730:CDS |
| GCTTATGAAGAAGTTACAGG+AGG | 0.689307 | 1_1:+4946623 | Msa0002730:CDS |
| CTCTTTGGAAAAGCACACGA+TGG | 0.698049 | 1_1:+4946245 | Msa0002730:CDS |
| AACGCTAGAGAATTTCAGAA+GGG | 0.699020 | 1_1:+4946341 | Msa0002730:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTCAACTAAAAAAAT+TGG | + | chr1_1:4944926-4944945 | Msa0002730:intron | 10.0% |
| !!! | TCAATATTTTAAAGCAAAAT+TGG | + | chr1_1:4945246-4945265 | Msa0002730:intron | 15.0% |
| !! | TCTATATTATGTATAACTTA+TGG | + | chr1_1:4945327-4945346 | Msa0002730:intron | 15.0% |
| !! | ATGCATAATTAAGTAAAATT+TGG | + | chr1_1:4947348-4947367 | Msa0002730:intron | 15.0% |
| !!! | CTACTACTATTAAATTTTTG+TGG | + | chr1_1:4944317-4944336 | Msa0002730:five_prime_UTR | 20.0% |
| !! | GGTATATAATATAGAAAAAG+AGG | - | chr1_1:4944602-4944621 | None:intergenic | 20.0% |
| !!! | TATTAATACTGTTTCTGTTA+CGG | + | chr1_1:4944732-4944751 | Msa0002730:intron | 20.0% |
| !! | TTGATTCTGTAAAAAATTGA+AGG | + | chr1_1:4945049-4945068 | Msa0002730:intron | 20.0% |
| !! | TATGAATGATGAATATTGAT+CGG | + | chr1_1:4945414-4945433 | Msa0002730:intron | 20.0% |
| !!! | TATAAAAAGTGCTGAATTTA+AGG | + | chr1_1:4946716-4946735 | Msa0002730:CDS | 20.0% |
| !! | TAACCTCCATTTAATTAAAA+GGG | - | chr1_1:4947096-4947115 | None:intergenic | 20.0% |
| !!! | ATGAGTGTTTATTTAAAGTA+TGG | - | chr1_1:4947305-4947324 | None:intergenic | 20.0% |
| !!! | ATTTTTTCGAAATCAGTTTT+TGG | - | chr1_1:4947878-4947897 | None:intergenic | 20.0% |
| !! | ACAAAAGAAAAATCTTAGTA+AGG | + | chr1_1:4947979-4947998 | Msa0002730:intron | 20.0% |
| !!! | TCCTTTCTTTTCTTTTTATT+TGG | + | chr1_1:4948135-4948154 | Msa0002730:intron | 20.0% |
| !! | ACCAAATAAAAAGAAAAGAA+AGG | - | chr1_1:4948139-4948158 | None:intergenic | 20.0% |
| !! | TTTATCACAAAGAGATAAAA+TGG | - | chr1_1:4948328-4948347 | None:intergenic | 20.0% |
| !!! | AAGAAAAAGTTTTGTTTGAG+AGG | - | chr1_1:4944289-4944308 | None:intergenic | 25.0% |
| ! | AAGGAAACAGAAAAAACAAA+AGG | - | chr1_1:4944623-4944642 | None:intergenic | 25.0% |
| !! | ACAAAATCAATTTTTGTCAC+GGG | - | chr1_1:4945009-4945028 | None:intergenic | 25.0% |
| !! | GACAAAATCAATTTTTGTCA+CGG | - | chr1_1:4945010-4945029 | None:intergenic | 25.0% |
| ! | GTAAAAAATTGAAGGTAAAG+TGG | + | chr1_1:4945057-4945076 | Msa0002730:intron | 25.0% |
| !!! | TACACTTGAACTCATTTTTT+AGG | - | chr1_1:4945105-4945124 | None:intergenic | 25.0% |
| !!! | TGAATTGATTTTGACATGTT+TGG | - | chr1_1:4945182-4945201 | None:intergenic | 25.0% |
| !! | TGTGAATTTATTGTGCTTTT+AGG | + | chr1_1:4945303-4945322 | Msa0002730:intron | 25.0% |
| !!! | AGACCTAGTTTTAACAATTA+TGG | + | chr1_1:4945595-4945614 | Msa0002730:CDS | 25.0% |
| !!! | AAATTGAGCTTCTAGAATTA+CGG | + | chr1_1:4946136-4946155 | Msa0002730:CDS | 25.0% |
| !!! | CTCTTTCCCTTTTAATTAAA+TGG | + | chr1_1:4947087-4947106 | Msa0002730:intron | 25.0% |
| !!! | TTTCCCTTTTAATTAAATGG+AGG | + | chr1_1:4947090-4947109 | Msa0002730:intron | 25.0% |
| ! | GTAACCTCCATTTAATTAAA+AGG | - | chr1_1:4947097-4947116 | None:intergenic | 25.0% |
| !!! | GTGTGTTTTTTGAATGAAAT+GGG | - | chr1_1:4947230-4947249 | None:intergenic | 25.0% |
| !!! | TGTGTGTTTTTTGAATGAAA+TGG | - | chr1_1:4947231-4947250 | None:intergenic | 25.0% |
| !! | TTTATTTAAAGTATGGAGCA+TGG | - | chr1_1:4947298-4947317 | None:intergenic | 25.0% |
| ! | AATTTGGTCAAATAGTCTAA+TGG | + | chr1_1:4947364-4947383 | Msa0002730:intron | 25.0% |
| ! | CAAAGATATTCACCTTAAAA+AGG | + | chr1_1:4947387-4947406 | Msa0002730:intron | 25.0% |
| ! | TATTATCGTTAACACCAAAA+AGG | + | chr1_1:4947656-4947675 | Msa0002730:intron | 25.0% |
| !! | AAGCTCTACAATGAATATTT+TGG | + | chr1_1:4947806-4947825 | Msa0002730:intron | 25.0% |
| ! | GTTAATTCAATTTACCATTC+AGG | - | chr1_1:4947951-4947970 | None:intergenic | 25.0% |
| ! | AGAAAGTTTGCATAAGAATT+TGG | - | chr1_1:4948093-4948112 | None:intergenic | 25.0% |
| ! | AGAACAATGAAATTATTGCA+TGG | - | chr1_1:4948241-4948260 | None:intergenic | 25.0% |
| AAGAGAAAAAAAGATGTCGA+TGG | - | chr1_1:4944396-4944415 | None:intergenic | 30.0% | |
| !! | TGTTACTTCAGTTAGTGTTT+TGG | + | chr1_1:4944979-4944998 | Msa0002730:intron | 30.0% |
| TTAATGCAAGTTTGATGAGT+AGG | + | chr1_1:4945384-4945403 | Msa0002730:intron | 30.0% | |
| TAATGCAAGTTTGATGAGTA+GGG | + | chr1_1:4945385-4945404 | Msa0002730:intron | 30.0% | |
| ATATTGATCGGATCATGATT+TGG | + | chr1_1:4945426-4945445 | Msa0002730:intron | 30.0% | |
| GAGTCACAACAAAATTGATT+TGG | - | chr1_1:4945513-4945532 | None:intergenic | 30.0% | |
| !! | ATCAATTTTGTTGTGACTCA+AGG | + | chr1_1:4945514-4945533 | Msa0002730:CDS | 30.0% |
| GCTCCATAATTGTTAAAACT+AGG | - | chr1_1:4945601-4945620 | None:intergenic | 30.0% | |
| ! | ATAGTGAGATTGATGGTTTA+CGG | + | chr1_1:4945968-4945987 | Msa0002730:CDS | 30.0% |
| TATTGAAGGAGAAAAACTCA+AGG | + | chr1_1:4946212-4946231 | Msa0002730:CDS | 30.0% | |
| TACAAAATGCAAGTACAAGA+AGG | + | chr1_1:4946432-4946451 | Msa0002730:CDS | 30.0% | |
| ACAAAATGCAAGTACAAGAA+GGG | + | chr1_1:4946433-4946452 | Msa0002730:CDS | 30.0% | |
| AGAACGAAAGAACAAAACTT+AGG | + | chr1_1:4946547-4946566 | Msa0002730:CDS | 30.0% | |
| GAACGAAAGAACAAAACTTA+GGG | + | chr1_1:4946548-4946567 | Msa0002730:CDS | 30.0% | |
| TTTGAATAAAGAACTCGAAC+AGG | + | chr1_1:4946581-4946600 | Msa0002730:CDS | 30.0% | |
| TTGAAGCAACCAATATGTTA+AGG | + | chr1_1:4946946-4946965 | Msa0002730:intron | 30.0% | |
| TGAAGCAACCAATATGTTAA+GGG | + | chr1_1:4946947-4946966 | Msa0002730:intron | 30.0% | |
| ATCTTTCTCCCTTAACATAT+TGG | - | chr1_1:4946958-4946977 | None:intergenic | 30.0% | |
| GTTCATGTATGTATGAAAGA+CGG | - | chr1_1:4947208-4947227 | None:intergenic | 30.0% | |
| ACCTTAAAAAGGTGAATATG+CGG | + | chr1_1:4947398-4947417 | Msa0002730:intron | 30.0% | |
| ! | TGAACATAACATGGTTGATA+GGG | - | chr1_1:4947454-4947473 | None:intergenic | 30.0% |
| TATCAACCATGTTATGTTCA+CGG | + | chr1_1:4947454-4947473 | Msa0002730:intron | 30.0% | |
| TTTGCCAGTTGTAATAAAGA+CGG | - | chr1_1:4947497-4947516 | None:intergenic | 30.0% | |
| GGTTACAAATGAGCTTATAT+TGG | + | chr1_1:4947783-4947802 | Msa0002730:intron | 30.0% | |
| ATCCCTAACTAATTTCAGTT+AGG | + | chr1_1:4947844-4947863 | Msa0002730:intron | 30.0% | |
| AGCCTAACTGAAATTAGTTA+GGG | - | chr1_1:4947849-4947868 | None:intergenic | 30.0% | |
| TAGCCTAACTGAAATTAGTT+AGG | - | chr1_1:4947850-4947869 | None:intergenic | 30.0% | |
| CTTCAACTAAGAATATTCCT+CGG | + | chr1_1:4948040-4948059 | Msa0002730:intron | 30.0% | |
| TTGCATGGTTTAAATGTGAA+AGG | - | chr1_1:4948226-4948245 | None:intergenic | 30.0% | |
| !! | TTCTTGAAGTGGCTTTATTA+GGG | - | chr1_1:4948281-4948300 | None:intergenic | 30.0% |
| TGAACTTAGATTTCGATGAT+CGG | - | chr1_1:4948365-4948384 | None:intergenic | 30.0% | |
| CTTCTTTGCAATAGAATCAT+TGG | + | chr1_1:4948533-4948552 | Msa0002730:CDS | 30.0% | |
| GAAAAAAAGATGTCGATGGA+GGG | - | chr1_1:4944392-4944411 | None:intergenic | 35.0% | |
| AGAAAAAAAGATGTCGATGG+AGG | - | chr1_1:4944393-4944412 | None:intergenic | 35.0% | |
| GTGCAAAATGCATTTACAGA+AGG | - | chr1_1:4944494-4944513 | None:intergenic | 35.0% | |
| AGTCATAGCAATAGCGAATA+AGG | - | chr1_1:4944516-4944535 | None:intergenic | 35.0% | |
| GCGTGCATAAAAAATAACGA+AGG | - | chr1_1:4944642-4944661 | None:intergenic | 35.0% | |
| !! | GGTAAAGTGGTGTTTTTGTT+TGG | + | chr1_1:4945070-4945089 | Msa0002730:intron | 35.0% |
| AATTGGTGAATTGTGAGATG+TGG | + | chr1_1:4945263-4945282 | Msa0002730:intron | 35.0% | |
| !! | AGATCTTCGTGATTTTGAGT+CGG | + | chr1_1:4945699-4945718 | Msa0002730:CDS | 35.0% |
| !! | AGAACTGTTTTGTTGGAGAA+TGG | + | chr1_1:4945781-4945800 | Msa0002730:CDS | 35.0% |
| ! | CAGCTTTAATTTCACTCTCT+TGG | - | chr1_1:4945840-4945859 | None:intergenic | 35.0% |
| ! | TAGTGAGATTGATGGTTTAC+GGG | + | chr1_1:4945969-4945988 | Msa0002730:CDS | 35.0% |
| GAGATGGAGAAAATGAAGAT+TGG | + | chr1_1:4946015-4946034 | Msa0002730:CDS | 35.0% | |
| ! | GGAGAAAATGAAGATTGGTT+TGG | + | chr1_1:4946020-4946039 | Msa0002730:CDS | 35.0% |
| TGATTCTGAGCTTAGACAAA+AGG | + | chr1_1:4946071-4946090 | Msa0002730:CDS | 35.0% | |
| AAACGCTAGAGAATTTCAGA+AGG | + | chr1_1:4946340-4946359 | Msa0002730:CDS | 35.0% | |
| AACGCTAGAGAATTTCAGAA+GGG | + | chr1_1:4946341-4946360 | Msa0002730:CDS | 35.0% | |
| TTCGTTCTCCACTTCTATTT+GGG | - | chr1_1:4946535-4946554 | None:intergenic | 35.0% | |
| TTTCGTTCTCCACTTCTATT+TGG | - | chr1_1:4946536-4946555 | None:intergenic | 35.0% | |
| GAAGAAAGAAAGAGCTTCTT+TGG | + | chr1_1:4946650-4946669 | Msa0002730:CDS | 35.0% | |
| TGACTCTTTGACATCAAGAA+GGG | - | chr1_1:4946751-4946770 | None:intergenic | 35.0% | |
| ! | CCTTTTCAGTTTTCAATTCC+TGG | - | chr1_1:4946800-4946819 | None:intergenic | 35.0% |
| CCAGGAATTGAAAACTGAAA+AGG | + | chr1_1:4946797-4946816 | Msa0002730:CDS | 35.0% | |
| TCTTAAGATCAGAGATTTCC+TGG | - | chr1_1:4946896-4946915 | None:intergenic | 35.0% | |
| ! | TCCGCATATTCACCTTTTTA+AGG | - | chr1_1:4947402-4947421 | None:intergenic | 35.0% |
| GTGAACATAACATGGTTGAT+AGG | - | chr1_1:4947455-4947474 | None:intergenic | 35.0% | |
| ATCAACCATGTTATGTTCAC+GGG | + | chr1_1:4947455-4947474 | Msa0002730:intron | 35.0% | |
| TCTACCGTCTTTATTACAAC+TGG | + | chr1_1:4947490-4947509 | Msa0002730:intron | 35.0% | |
| ! | ATTTTCTTTGCCTTCCACAA+AGG | - | chr1_1:4947534-4947553 | None:intergenic | 35.0% |
| CTATGATGTGCTCGTTTAAT+AGG | + | chr1_1:4947558-4947577 | Msa0002730:intron | 35.0% | |
| CAACATGATTGCATGACTAT+CGG | + | chr1_1:4947595-4947614 | Msa0002730:intron | 35.0% | |
| TATCGTTAACACCAAAAAGG+TGG | + | chr1_1:4947659-4947678 | Msa0002730:intron | 35.0% | |
| ! | ATTTGAGCTATCCACCTTTT+TGG | - | chr1_1:4947673-4947692 | None:intergenic | 35.0% |
| GCACAGATATAAGACAACTA+TGG | + | chr1_1:4947703-4947722 | Msa0002730:intron | 35.0% | |
| ! | TCACGACATTTTCTTGATCA+TGG | - | chr1_1:4947754-4947773 | None:intergenic | 35.0% |
| AAAATGTCGTGATCGTACAA+AGG | + | chr1_1:4947762-4947781 | Msa0002730:intron | 35.0% | |
| TGTTTATCAGCACAAGTTCA+AGG | - | chr1_1:4948012-4948031 | None:intergenic | 35.0% | |
| !! | CTTCTTGAAGTGGCTTTATT+AGG | - | chr1_1:4948282-4948301 | None:intergenic | 35.0% |
| GAACTTAGATTTCGATGATC+GGG | - | chr1_1:4948364-4948383 | None:intergenic | 35.0% | |
| ATCGAAATCTAAGTTCACCA+TGG | + | chr1_1:4948368-4948387 | Msa0002730:intron | 35.0% | |
| TCGAAATCTAAGTTCACCAT+GGG | + | chr1_1:4948369-4948388 | Msa0002730:intron | 35.0% | |
| !! | AAAGTTGATGGTTGAACTTG+GGG | - | chr1_1:4948423-4948442 | None:intergenic | 35.0% |
| !! | GAAAGTTGATGGTTGAACTT+GGG | - | chr1_1:4948424-4948443 | None:intergenic | 35.0% |
| AGCAAAGGATACTGAAATGT+TGG | - | chr1_1:4948468-4948487 | None:intergenic | 35.0% | |
| GAAGAAGAATTCTCAGGTGA+CGG | - | chr1_1:4944264-4944283 | None:intergenic | 40.0% | |
| GAGGTAGAAGAAGAATTCTC+AGG | - | chr1_1:4944270-4944289 | None:intergenic | 40.0% | |
| TAACAAACCTGAGAGTAGGA+AGG | - | chr1_1:4944572-4944591 | None:intergenic | 40.0% | |
| GAAGTAACAAACCTGAGAGT+AGG | - | chr1_1:4944576-4944595 | None:intergenic | 40.0% | |
| ! | CTGTTACGGACTGTGATTTA+CGG | + | chr1_1:4944746-4944765 | Msa0002730:intron | 40.0% |
| GTGAATTGTGAGATGTGGAA+TGG | + | chr1_1:4945268-4945287 | Msa0002730:intron | 40.0% | |
| ! | GATCGGATCATGATTTGGAA+TGG | + | chr1_1:4945431-4945450 | Msa0002730:intron | 40.0% |
| TGTGCTCTCTTAGGTACAAT+AGG | + | chr1_1:4945476-4945495 | Msa0002730:CDS | 40.0% | |
| GTTGTGACTCAAGGAAGAAA+AGG | + | chr1_1:4945523-4945542 | Msa0002730:CDS | 40.0% | |
| ! | GAAGAAAAGGTCGTTGGTTA+AGG | + | chr1_1:4945536-4945555 | Msa0002730:CDS | 40.0% |
| ! | AAAGGTCGTTGGTTAAGGAA+TGG | + | chr1_1:4945541-4945560 | Msa0002730:CDS | 40.0% |
| GTTTGAGCAGACACAAAAGT+TGG | + | chr1_1:4945651-4945670 | Msa0002730:CDS | 40.0% | |
| AGACACAAAAGTTGGACAAC+CGG | + | chr1_1:4945659-4945678 | Msa0002730:CDS | 40.0% | |
| GACTCAAAATCACGAAGATC+TGG | - | chr1_1:4945700-4945719 | None:intergenic | 40.0% | |
| ! | AGTGGAGAGAACTGTTTTGT+TGG | + | chr1_1:4945774-4945793 | Msa0002730:CDS | 40.0% |
| AGATAGAGGAAATGAAGCTC+CGG | + | chr1_1:4945932-4945951 | Msa0002730:CDS | 40.0% | |
| ! | GATCGTGATAGTGAGATTGA+TGG | + | chr1_1:4945961-4945980 | Msa0002730:CDS | 40.0% |
| ! | GTCTTTGAAGGAAGAAGAGA+TGG | + | chr1_1:4945999-4946018 | Msa0002730:CDS | 40.0% |
| AGAAAAACTCAAGGTTGCAG+AGG | + | chr1_1:4946221-4946240 | Msa0002730:CDS | 40.0% | |
| ACAACATGACACTTTCCCTT+TGG | - | chr1_1:4946491-4946510 | None:intergenic | 40.0% | |
| !! | GGAAAGTGTCATGTTGTACA+TGG | + | chr1_1:4946494-4946513 | Msa0002730:CDS | 40.0% |
| GAAAGATGCCCAAATAGAAG+TGG | + | chr1_1:4946524-4946543 | Msa0002730:CDS | 40.0% | |
| CTTCATAAGCTCCTTCTCTA+CGG | - | chr1_1:4946613-4946632 | None:intergenic | 40.0% | |
| GGAGCTTATGAAGAAGTTAC+AGG | + | chr1_1:4946620-4946639 | Msa0002730:CDS | 40.0% | |
| GCTTATGAAGAAGTTACAGG+AGG | + | chr1_1:4946623-4946642 | Msa0002730:CDS | 40.0% | |
| CTGACTCTTTGACATCAAGA+AGG | - | chr1_1:4946752-4946771 | None:intergenic | 40.0% | |
| TGATGCTAAGCTACAAATCC+AGG | + | chr1_1:4946779-4946798 | Msa0002730:CDS | 40.0% | |
| ! | ACTTGGAACTTTCAAGTGCT+AGG | + | chr1_1:4946850-4946869 | Msa0002730:CDS | 40.0% |
| TACAATCCACCAAGGATTAC+CGG | + | chr1_1:4947114-4947133 | Msa0002730:intron | 40.0% | |
| CAAATGCTTCATGTGATGAC+CGG | - | chr1_1:4947136-4947155 | None:intergenic | 40.0% | |
| !! | CATGGTTGATAGGGATATTG+CGG | - | chr1_1:4947445-4947464 | None:intergenic | 40.0% |
| TCAACCATGTTATGTTCACG+GGG | + | chr1_1:4947456-4947475 | Msa0002730:intron | 40.0% | |
| GTAATAAAGACGGTAGATGC+AGG | - | chr1_1:4947487-4947506 | None:intergenic | 40.0% | |
| ! | GACAACTATGGTGTTGAGAA+AGG | + | chr1_1:4947715-4947734 | Msa0002730:intron | 40.0% |
| ! | ACTATGGTGTTGAGAAAGGA+AGG | + | chr1_1:4947719-4947738 | Msa0002730:intron | 40.0% |
| ! | TTCAGGCTCACTCTTATTTC+AGG | - | chr1_1:4947934-4947953 | None:intergenic | 40.0% |
| GAAATAAGAGTGAGCCTGAA+TGG | + | chr1_1:4947934-4947953 | Msa0002730:intron | 40.0% | |
| GCTGAATTCATTGTAGCTCT+TGG | + | chr1_1:4948164-4948183 | Msa0002730:intron | 40.0% | |
| TGTGCATGTACTTCTTGAAG+TGG | - | chr1_1:4948292-4948311 | None:intergenic | 40.0% | |
| !! | GGAAAGTTGATGGTTGAACT+TGG | - | chr1_1:4948425-4948444 | None:intergenic | 40.0% |
| GCTAAAGAAGATGTCAAGGT+CGG | - | chr1_1:4948446-4948465 | None:intergenic | 40.0% | |
| GTTGGCTAAAGAAGATGTCA+AGG | - | chr1_1:4948450-4948469 | None:intergenic | 40.0% | |
| AGAGAAATAAGCAGCAGCAA+AGG | - | chr1_1:4948483-4948502 | None:intergenic | 40.0% | |
| GTGTGAAGAAGCTTCACTTT+GGG | - | chr1_1:4948514-4948533 | Msa0002740:CDS | 40.0% | |
| AGTGTGAAGAAGCTTCACTT+TGG | - | chr1_1:4948515-4948534 | Msa0002740:CDS | 40.0% | |
| ATGGAGGGAGGGAAAAGTTA+TGG | - | chr1_1:4944377-4944396 | None:intergenic | 45.0% | |
| AAAAGATGTCGATGGAGGGA+GGG | - | chr1_1:4944388-4944407 | None:intergenic | 45.0% | |
| AAAAAGATGTCGATGGAGGG+AGG | - | chr1_1:4944389-4944408 | None:intergenic | 45.0% | |
| AAACAATAGCACGCTAGCGT+TGG | - | chr1_1:4944455-4944474 | None:intergenic | 45.0% | |
| TTCCACATCTCACTGTTCGA+AGG | + | chr1_1:4945206-4945225 | Msa0002730:intron | 45.0% | |
| TCCACATCTCACTGTTCGAA+GGG | + | chr1_1:4945207-4945226 | Msa0002730:intron | 45.0% | |
| GCAAGTTTGATGAGTAGGGT+TGG | + | chr1_1:4945389-4945408 | Msa0002730:intron | 45.0% | |
| TGCAGTTGTTGTGCTCTCTT+AGG | + | chr1_1:4945467-4945486 | Msa0002730:intron | 45.0% | |
| CTCAAGGAAGAAAAGGTCGT+TGG | + | chr1_1:4945530-4945549 | Msa0002730:CDS | 45.0% | |
| AAGTTGGACAACCGGATGAT+AGG | + | chr1_1:4945667-4945686 | Msa0002730:CDS | 45.0% | |
| GCTCATGGAATTGAAGGAGA+AGG | + | chr1_1:4945735-4945754 | Msa0002730:CDS | 45.0% | |
| CATGGAATTGAAGGAGAAGG+AGG | + | chr1_1:4945738-4945757 | Msa0002730:CDS | 45.0% | |
| GGAGAAGGAGGATCATTTAC+AGG | + | chr1_1:4945750-4945769 | Msa0002730:CDS | 45.0% | |
| GGAGGATCATTTACAGGAAG+TGG | + | chr1_1:4945756-4945775 | Msa0002730:CDS | 45.0% | |
| GTTGGAGAATGGAAAGCTGA+AGG | + | chr1_1:4945792-4945811 | Msa0002730:CDS | 45.0% | |
| AAAGCTGAAGGATGCGAAAG+AGG | + | chr1_1:4945804-4945823 | Msa0002730:CDS | 45.0% | |
| GAGGCTTGAAGATGAGATGA+AGG | + | chr1_1:4945876-4945895 | Msa0002730:CDS | 45.0% | |
| GCTTGAAGATGAGATGAAGG+AGG | + | chr1_1:4945879-4945898 | Msa0002730:CDS | 45.0% | |
| ! | GCTAGTTTGGTTTCTCAAGC+TGG | + | chr1_1:4945907-4945926 | Msa0002730:CDS | 45.0% |
| TTCTCAAGCTGGACAGATAG+AGG | + | chr1_1:4945918-4945937 | Msa0002730:CDS | 45.0% | |
| AGAAGAACTACGTCTATCCG+TGG | + | chr1_1:4946179-4946198 | Msa0002730:CDS | 45.0% | |
| ! | CATCGTGTGCTTTTCCAAAG+AGG | - | chr1_1:4946247-4946266 | None:intergenic | 45.0% |
| ! | CTCTTTGGAAAAGCACACGA+TGG | + | chr1_1:4946245-4946264 | Msa0002730:CDS | 45.0% |
| GGAGTGGTTGTTAACACAAG+AGG | + | chr1_1:4946266-4946285 | Msa0002730:CDS | 45.0% | |
| ACAAGAGGAACTCAAGAGAC+TGG | + | chr1_1:4946281-4946300 | Msa0002730:CDS | 45.0% | |
| AGAAGCTTCTCAGTGATGTC+AGG | + | chr1_1:4946367-4946386 | Msa0002730:CDS | 45.0% | |
| AGCAATCGCTTGCATCTTCT+AGG | + | chr1_1:4946409-4946428 | Msa0002730:CDS | 45.0% | |
| GCAAGTACAAGAAGGGTTGT+TGG | + | chr1_1:4946440-4946459 | Msa0002730:CDS | 45.0% | |
| ACAGGATTTGTCCGTAGAGA+AGG | + | chr1_1:4946599-4946618 | Msa0002730:CDS | 45.0% | |
| !! | AGAAAGAGCTTCTTTGGAGC+AGG | + | chr1_1:4946656-4946675 | Msa0002730:CDS | 45.0% |
| CTTGAAGCGAAGCCATTTCT+TGG | - | chr1_1:4946686-4946705 | None:intergenic | 45.0% | |
| AGAAATGGCTTCGCTTCAAG+AGG | + | chr1_1:4946686-4946705 | Msa0002730:CDS | 45.0% | |
| TTCTCTTCAGTCTCTCTTGG+AGG | + | chr1_1:4946821-4946840 | Msa0002730:CDS | 45.0% | |
| TCTCTTGGAGGAGAAAGACT+TGG | + | chr1_1:4946833-4946852 | Msa0002730:CDS | 45.0% | |
| TTCAAGTGCTAGGAAGATGC+TGG | + | chr1_1:4946860-4946879 | Msa0002730:CDS | 45.0% | |
| ATGGAGGTTACAATCCACCA+AGG | + | chr1_1:4947106-4947125 | Msa0002730:intron | 45.0% | |
| ATGTGATGACCGGTAATCCT+TGG | - | chr1_1:4947126-4947145 | None:intergenic | 45.0% | |
| GGAGTTTGTGTGTCTGAATG+TGG | + | chr1_1:4948185-4948204 | Msa0002730:intron | 45.0% | |
| GCTAGCCATCGATACCAAAA+CGG | + | chr1_1:4948391-4948410 | Msa0002730:intron | 45.0% | |
| !! | GATGTCCGTTTTGGTATCGA+TGG | - | chr1_1:4948399-4948418 | None:intergenic | 45.0% |
| TGTCAAGGTCGGAAAGTTGA+TGG | - | chr1_1:4948435-4948454 | None:intergenic | 45.0% | |
| ! | GAATTCTCAGGTGACGGTCT+TGG | - | chr1_1:4944258-4944277 | None:intergenic | 50.0% |
| ! | CGCTAGCGTGCTATTGTTTC+TGG | + | chr1_1:4944456-4944475 | Msa0002730:five_prime_UTR | 50.0% |
| GAGTAGGAAGGAGAAGAGGT+AGG | - | chr1_1:4944560-4944579 | None:intergenic | 50.0% | |
| CTGAGAGTAGGAAGGAGAAG+AGG | - | chr1_1:4944564-4944583 | None:intergenic | 50.0% | |
| CTCTTCTCCTTCCTACTCTC+AGG | + | chr1_1:4944562-4944581 | Msa0002730:CDS | 50.0% | |
| TCCCTTCGAACAGTGAGATG+TGG | - | chr1_1:4945211-4945230 | None:intergenic | 50.0% | |
| TCGAGAAGCCTAGCAGATTC+TGG | - | chr1_1:4945625-4945644 | None:intergenic | 50.0% | |
| CTGGTTCCTCTCCTATCATC+CGG | - | chr1_1:4945681-4945700 | None:intergenic | 50.0% | |
| ! | GGATCTTTTGTCTGCGCTCA+TGG | + | chr1_1:4945720-4945739 | Msa0002730:CDS | 50.0% |
| GTCTGCGCTCATGGAATTGA+AGG | + | chr1_1:4945729-4945748 | Msa0002730:CDS | 50.0% | |
| AGATGAGATGAAGGAGGCGA+CGG | + | chr1_1:4945885-4945904 | Msa0002730:CDS | 50.0% | |
| AGGAAATGAAGCTCCGGCTT+AGG | + | chr1_1:4945938-4945957 | Msa0002730:CDS | 50.0% | |
| GGAAATGAAGCTCCGGCTTA+GGG | + | chr1_1:4945939-4945958 | Msa0002730:CDS | 50.0% | |
| CACTATCACGATCCCTAAGC+CGG | - | chr1_1:4945954-4945973 | None:intergenic | 50.0% | |
| TTCAATATCCCTCGCAGCCA+CGG | - | chr1_1:4946199-4946218 | None:intergenic | 50.0% | |
| ! | TGGAAAAGCACACGATGGAG+TGG | + | chr1_1:4946250-4946269 | Msa0002730:CDS | 50.0% |
| GGAACTCAAGAGACTGGAAG+AGG | + | chr1_1:4946287-4946306 | Msa0002730:CDS | 50.0% | |
| ACTCAAGAGACTGGAAGAGG+AGG | + | chr1_1:4946290-4946309 | Msa0002730:CDS | 50.0% | |
| TGGCTGAACTTGCAGACCAA+AGG | + | chr1_1:4946472-4946491 | Msa0002730:CDS | 50.0% | |
| GGCTGAACTTGCAGACCAAA+GGG | + | chr1_1:4946473-4946492 | Msa0002730:CDS | 50.0% | |
| GGCTTCTCTTCAGTCTCTCT+TGG | + | chr1_1:4946818-4946837 | Msa0002730:CDS | 50.0% | |
| AAGTGCTAGGAAGATGCTGG+TGG | + | chr1_1:4946863-4946882 | Msa0002730:CDS | 50.0% | |
| GATGCTGGTGGAACTAAACC+AGG | + | chr1_1:4946875-4946894 | Msa0002730:CDS | 50.0% | |
| TGATGACCGGTAATCCTTGG+TGG | - | chr1_1:4947123-4947142 | None:intergenic | 50.0% | |
| !! | TTGGGGTGAGAGCACTTGTT+TGG | - | chr1_1:4947177-4947196 | None:intergenic | 50.0% |
| TGAAAGACGGCGTCCATGTT+GGG | - | chr1_1:4947195-4947214 | None:intergenic | 50.0% | |
| ATGAAAGACGGCGTCCATGT+TGG | - | chr1_1:4947196-4947215 | None:intergenic | 50.0% | |
| CCATGTTATGTTCACGGGGA+CGG | + | chr1_1:4947460-4947479 | Msa0002730:intron | 50.0% | |
| CATGTTATGTTCACGGGGAC+GGG | + | chr1_1:4947461-4947480 | Msa0002730:intron | 50.0% | |
| TTGCGTGTAGCCTTTGTGGA+AGG | + | chr1_1:4947521-4947540 | Msa0002730:intron | 50.0% | |
| TCAAAGAGCAAATGCAGCCG+AGG | - | chr1_1:4948060-4948079 | None:intergenic | 50.0% | |
| ! | ACTTGGGGTGATGTCCGTTT+TGG | - | chr1_1:4948408-4948427 | None:intergenic | 50.0% |
| ! | ATGGAGCGCCAGAATCTGCT+AGG | + | chr1_1:4945614-4945633 | Msa0002730:CDS | 55.0% |
| GGACAACCGGATGATAGGAG+AGG | + | chr1_1:4945672-4945691 | Msa0002730:CDS | 55.0% | |
| ! | CTGCTCGCGAGAAGTATGAG+AGG | + | chr1_1:4945857-4945876 | Msa0002730:CDS | 55.0% |
| ACGGGATGCGCTGTCTTTGA+AGG | + | chr1_1:4945987-4946006 | Msa0002730:CDS | 55.0% | |
| GTGGCTGCGAGGGATATTGA+AGG | + | chr1_1:4946198-4946217 | Msa0002730:CDS | 55.0% | |
| CAAGGTTGCAGAGGCCTCTT+TGG | + | chr1_1:4946230-4946249 | Msa0002730:CDS | 55.0% | |
| GACTGGAAGAGGAGGCTTCA+AGG | + | chr1_1:4946298-4946317 | Msa0002730:CDS | 55.0% | |
| AGGGTTGTTGGAACAGCAGC+TGG | + | chr1_1:4946452-4946471 | Msa0002730:CDS | 55.0% | |
| GGAGCAGGCTGTCCAAGAAA+TGG | + | chr1_1:4946671-4946690 | Msa0002730:CDS | 55.0% | |
| CAAGTGCTCTCACCCCAACA+TGG | + | chr1_1:4947179-4947198 | Msa0002730:intron | 55.0% | |
| GAAAGACGGCGTCCATGTTG+GGG | - | chr1_1:4947194-4947213 | None:intergenic | 55.0% | |
| CCGTCCCCGTGAACATAACA+TGG | - | chr1_1:4947463-4947482 | None:intergenic | 55.0% | |
| GCAGTTGCGTGTAGCCTTTG+TGG | + | chr1_1:4947517-4947536 | Msa0002730:intron | 55.0% | |
| !! | TGGTATCGATGGCTAGCCCA+TGG | - | chr1_1:4948388-4948407 | None:intergenic | 55.0% |
| ! | GAAGGAGGCGACGGCTAGTT+TGG | + | chr1_1:4945894-4945913 | Msa0002730:CDS | 60.0% |
| TACGTCTATCCGTGGCTGCG+AGG | + | chr1_1:4946187-4946206 | Msa0002730:CDS | 60.0% | |
| ACGTCTATCCGTGGCTGCGA+GGG | + | chr1_1:4946188-4946207 | Msa0002730:CDS | 60.0% | |
| GGAGGCTTCAAGGCATGCAC+AGG | + | chr1_1:4946308-4946327 | Msa0002730:CDS | 60.0% | |
| CGACAGTGCACTCGCACTTG+CGG | + | chr1_1:4947271-4947290 | Msa0002730:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 4944233 | 4948572 | 4944233 | ID=Msa0002730;Name=Msa0002730 |
| chr1_1 | mRNA | 4944233 | 4948572 | 4944233 | ID=Msa0002730-mRNA-1;Parent=Msa0002730;Name=Msa0002730-mRNA-1;_AED=0.02;_eAED=0.02;_QI=297|0.5|0.33|0.66|1|1|3|0|535 |
| chr1_1 | exon | 4944233 | 4944583 | 4944233 | ID=Msa0002730-mRNA-1:exon:1474;Parent=Msa0002730-mRNA-1 |
| chr1_1 | exon | 4945472 | 4946961 | 4945472 | ID=Msa0002730-mRNA-1:exon:1475;Parent=Msa0002730-mRNA-1 |
| chr1_1 | exon | 4948509 | 4948572 | 4948509 | ID=Msa0002730-mRNA-1:exon:1476;Parent=Msa0002730-mRNA-1 |
| chr1_1 | five_prime_UTR | 4944233 | 4944529 | 4944233 | ID=Msa0002730-mRNA-1:five_prime_utr;Parent=Msa0002730-mRNA-1 |
| chr1_1 | CDS | 4944530 | 4944583 | 4944530 | ID=Msa0002730-mRNA-1:cds;Parent=Msa0002730-mRNA-1 |
| chr1_1 | CDS | 4945472 | 4946961 | 4945472 | ID=Msa0002730-mRNA-1:cds;Parent=Msa0002730-mRNA-1 |
| chr1_1 | CDS | 4948509 | 4948572 | 4948509 | ID=Msa0002730-mRNA-1:cds;Parent=Msa0002730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
