Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0148790 | XP_024631024.1 | 96.368 | 771 | 28 | 0 | 1 | 771 | 1 | 771 | 0.0 | 1449 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0148790 | A0A396JFC3 | 96.368 | 771 | 28 | 0 | 1 | 771 | 1 | 771 | 0.0 | 1449 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002730 | Msa0148790 | 0.912514 | 1.785244e-83 | -8.615850e-47 |
| Msa0006640 | Msa0148790 | 0.972457 | 8.499677e-135 | -8.615850e-47 |
| Msa0101130 | Msa0148790 | 0.988384 | 8.292746e-174 | -8.615850e-47 |
| Msa0148790 | Msa0479120 | -0.806098 | 9.701776e-50 | -8.615850e-47 |
| Msa0148790 | Msa0768810 | 0.853271 | 2.668704e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0148790 | MtrunA17_Chr1g0149461 | 96.368 | 771 | 28 | 0 | 1 | 771 | 1 | 771 | 0.0 | 1449 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0148790 | AT4G32190.1 | 46.447 | 788 | 391 | 11 | 1 | 771 | 1 | 774 | 4.14e-177 | 528 |
Find 165 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCTAGCGTGCTATTGTTTC+TGG | 0.076171 | 1_4:-9261341 | Msa0148790:five_prime_UTR |
| ATTGATGTCTTCATTCTTAA+TGG | 0.150281 | 1_4:+9258709 | None:intergenic |
| CTTGAAGCGAAGCCATTTCT+TGG | 0.183967 | 1_4:+9259113 | None:intergenic |
| TTGTATTATTCAACTTATTT+TGG | 0.204495 | 1_4:+9258801 | None:intergenic |
| TTTCGTTCTCCACTTCTATT+TGG | 0.209735 | 1_4:+9259263 | None:intergenic |
| TTGTAATCTATTTGGCTAAA+AGG | 0.210144 | 1_4:-9258013 | Msa0148790:three_prime_UTR |
| GAAGAAAGAAAGAGCTTCTT+TGG | 0.211625 | 1_4:-9259146 | Msa0148790:CDS |
| CAAGGTTGCAGAGGCCTCTT+TGG | 0.261894 | 1_4:-9259566 | Msa0148790:CDS |
| ATCAATACCACTAAATGAAT+TGG | 0.277257 | 1_4:-9258684 | Msa0148790:CDS |
| TAAAATGACTCTTGCAAGAT+TGG | 0.293172 | 1_4:-9258498 | Msa0148790:CDS |
| ATCTTTCTCCCTTAACATAT+TGG | 0.298583 | 1_4:+9258841 | None:intergenic |
| GAAGGAGGCGACGGCTAGTT+TGG | 0.320741 | 1_4:-9259902 | Msa0148790:CDS |
| TTTGTATGTTGTAATCTATT+TGG | 0.321922 | 1_4:-9258021 | Msa0148790:three_prime_UTR |
| TCGAGAAGCCTAGCAGATTC+TGG | 0.328588 | 1_4:+9260174 | None:intergenic |
| TGCAGTTGTTGTGCTCTCTT+AGG | 0.332854 | 1_4:-9260329 | Msa0148790:intron |
| AGTCATAGCAATAGCGAATA+AGG | 0.335485 | 1_4:+9261284 | None:intergenic |
| TTCGTTCTCCACTTCTATTT+GGG | 0.342748 | 1_4:+9259264 | None:intergenic |
| TTTCGGCCTCGAAAGCCTTC+AGG | 0.344280 | 1_4:+9258777 | None:intergenic |
| CAGCTTTAATTTCACTCTCT+TGG | 0.346685 | 1_4:+9259959 | None:intergenic |
| CAAGCTAAAAGACATGTTAA+AGG | 0.351508 | 1_4:-9258070 | Msa0148790:exon |
| TGATCACCCAATTCATTTAG+TGG | 0.352770 | 1_4:+9258677 | None:intergenic |
| TTGAAGCAACCAATATGTTA+AGG | 0.356086 | 1_4:-9258850 | Msa0148790:CDS |
| GAGTCACAACAAAATTGATT+TGG | 0.357750 | 1_4:+9260286 | None:intergenic |
| TCTTAAGATCAGAGATTTCC+TGG | 0.358030 | 1_4:+9258903 | None:intergenic |
| TATCAATTGCATTGACTGTT+TGG | 0.359145 | 1_4:-9258168 | Msa0148790:CDS |
| GGAGAAGGAGGATCATTTAC+AGG | 0.372000 | 1_4:-9260046 | Msa0148790:CDS |
| AGGAAATGAAGCTCCGGCTT+AGG | 0.372074 | 1_4:-9259858 | Msa0148790:CDS |
| CTCTTCTCCTTCCTACTCTC+AGG | 0.372331 | 1_4:-9261235 | Msa0148790:intron |
| AACTCGTTCAACCACAGTTT+CGG | 0.374671 | 1_4:+9258760 | None:intergenic |
| TGTGCTCTCTTAGGTACAAT+AGG | 0.375275 | 1_4:-9260320 | Msa0148790:CDS |
| AGATGCTAATGAGCATAAAA+TGG | 0.376441 | 1_4:-9258429 | Msa0148790:CDS |
| AAATTGAGCTTCTAGAATTA+CGG | 0.387513 | 1_4:-9259660 | Msa0148790:CDS |
| GGAAATGAAGCTCCGGCTTA+GGG | 0.388122 | 1_4:-9259857 | Msa0148790:CDS |
| GAAGAAAAGGTCGTTGGTTA+AGG | 0.395609 | 1_4:-9260260 | Msa0148790:CDS |
| ATAGTGAGATTGATGGTTTA+CGG | 0.396914 | 1_4:-9259828 | Msa0148790:CDS |
| GTCTGCGCTCATGGAATTGA+AGG | 0.397775 | 1_4:-9260067 | Msa0148790:CDS |
| GGCTTCTCTTCAGTCTCTCT+TGG | 0.398610 | 1_4:-9258978 | Msa0148790:CDS |
| TCAATTAATGATGCCACTTT+CGG | 0.401307 | 1_4:-9258657 | Msa0148790:CDS |
| TAAGATATTCACTTTGTTTG+CGG | 0.405390 | 1_4:-9257959 | Msa0148790:three_prime_UTR |
| GAGATGGAGAAAATGAAGAT+TGG | 0.405764 | 1_4:-9259781 | Msa0148790:CDS |
| GGAGGATCATTTACAGGAAG+TGG | 0.406116 | 1_4:-9260040 | Msa0148790:CDS |
| GACTGGAAGAGGAGGCTTCA+AGG | 0.407228 | 1_4:-9259498 | Msa0148790:CDS |
| TGAAGCAACCAATATGTTAA+GGG | 0.412520 | 1_4:-9258849 | Msa0148790:CDS |
| TAGTGAGATTGATGGTTTAC+GGG | 0.413981 | 1_4:-9259827 | Msa0148790:CDS |
| AGCAGCAGAAGTCATTGCTT+TGG | 0.413989 | 1_4:+9257728 | None:intergenic |
| AGCAATCGCTTGCATCTTCT+AGG | 0.416362 | 1_4:-9259387 | Msa0148790:CDS |
| GAGAATCGGCGAGAAAACTA+TGG | 0.417613 | 1_4:-9258387 | Msa0148790:CDS |
| ACAACATGACACTTTCCCTT+TGG | 0.422560 | 1_4:+9259308 | None:intergenic |
| GGAGAAAATGAAGATTGGTT+TGG | 0.423670 | 1_4:-9259776 | Msa0148790:CDS |
| AAGTTGGACAACCGGATGAT+AGG | 0.425017 | 1_4:-9260129 | Msa0148790:CDS |
| GAATTCTCAGGTGACGGTCT+TGG | 0.425271 | 1_4:+9261542 | None:intergenic |
| GGAGCAGGCTGTCCAAGAAA+TGG | 0.430948 | 1_4:-9259125 | Msa0148790:CDS |
| TTTGAATAAAGAACTCGAAC+AGG | 0.433509 | 1_4:-9259215 | Msa0148790:CDS |
| GCTAGTTTGGTTTCTCAAGC+TGG | 0.442794 | 1_4:-9259889 | Msa0148790:CDS |
| TTCTCTTCAGTCTCTCTTGG+AGG | 0.443922 | 1_4:-9258975 | Msa0148790:CDS |
| GGAGCTTATGAAGAAGTTAC+AGG | 0.444266 | 1_4:-9259176 | Msa0148790:CDS |
| TGCCAACTCAATTCACTAGT+AGG | 0.444901 | 1_4:+9258629 | None:intergenic |
| ACGGGATGCGCTGTCTTTGA+AGG | 0.447564 | 1_4:-9259809 | Msa0148790:CDS |
| GATCGTGATAGTGAGATTGA+TGG | 0.456862 | 1_4:-9259835 | Msa0148790:CDS |
| TGATTCTGAGCTTAGACAAA+AGG | 0.457472 | 1_4:-9259725 | Msa0148790:CDS |
| TGATATTTGTGATTAAATTG+AGG | 0.464943 | 1_4:+9258186 | None:intergenic |
| TCAATACCACTAAATGAATT+GGG | 0.468024 | 1_4:-9258683 | Msa0148790:CDS |
| CGAGAAAACTATGGATGACT+TGG | 0.468169 | 1_4:-9258378 | Msa0148790:CDS |
| GTTGTGACTCAAGGAAGAAA+AGG | 0.469931 | 1_4:-9260273 | Msa0148790:CDS |
| CCAGGAATTGAAAACTGAAA+AGG | 0.470099 | 1_4:-9258999 | Msa0148790:CDS |
| GCAAGTACAAGAAGGGTTGT+TGG | 0.471519 | 1_4:-9259356 | Msa0148790:CDS |
| AGAAAGAGCTTCTTTGGAGC+AGG | 0.472671 | 1_4:-9259140 | Msa0148790:CDS |
| ATGGAGGGAGGGAAAAGTTA+TGG | 0.475948 | 1_4:+9261423 | None:intergenic |
| AGAACGAAAGAACAAAACTT+AGG | 0.479483 | 1_4:-9259249 | Msa0148790:CDS |
| GAGGCTTGAAGATGAGATGA+AGG | 0.479878 | 1_4:-9259920 | Msa0148790:CDS |
| AGGGTTGTTGGAACAGCAGC+TGG | 0.480838 | 1_4:-9259344 | Msa0148790:CDS |
| GGCTGAACTTGCAGACCAAA+GGG | 0.481085 | 1_4:-9259323 | Msa0148790:CDS |
| AGACACAGAAGTTGGACAAC+CGG | 0.482352 | 1_4:-9260137 | Msa0148790:CDS |
| TTCTCAAGCTGGACAGATAG+AGG | 0.486214 | 1_4:-9259878 | Msa0148790:CDS |
| TACAAGCCTGAAGGCTTTCG+AGG | 0.490119 | 1_4:-9258783 | Msa0148790:CDS |
| TGCAAGATTGGATGCAAAAG+AGG | 0.490164 | 1_4:-9258486 | Msa0148790:CDS |
| GACTCAAAATCACAAAGATC+TGG | 0.498225 | 1_4:+9260099 | None:intergenic |
| TACAAAATGCAAGTACAAGA+AGG | 0.505025 | 1_4:-9259364 | Msa0148790:CDS |
| TGATGCTAAGCTACAAATCC+AGG | 0.506835 | 1_4:-9259017 | Msa0148790:CDS |
| GTTTGAGCAGACACAGAAGT+TGG | 0.508360 | 1_4:-9260145 | Msa0148790:CDS |
| GAGCAGCTTGTGATGGATGC+AGG | 0.510253 | 1_4:-9258104 | Msa0148790:CDS |
| GAGGTAGAAGAAGAATTCTC+AGG | 0.511533 | 1_4:+9261530 | None:intergenic |
| AGAAGCTTCTCAGTGATGTC+AGG | 0.514810 | 1_4:-9259429 | Msa0148790:CDS |
| AGCAGGAGTTGCTCGACTCT+CGG | 0.517054 | 1_4:-9258135 | Msa0148790:CDS |
| CACTATCACGATCCCTAAGC+CGG | 0.519235 | 1_4:+9259845 | None:intergenic |
| GCTATGACGCAGGAGAGAAT+CGG | 0.519440 | 1_4:-9258401 | Msa0148790:CDS |
| GGAGGCTTCAAGGCATGCAC+AGG | 0.519791 | 1_4:-9259488 | Msa0148790:CDS |
| GAACGAAAGAACAAAACTTA+GGG | 0.519943 | 1_4:-9259248 | Msa0148790:CDS |
| ACAAGAGGAACTCAAGAGAC+TGG | 0.522581 | 1_4:-9259515 | Msa0148790:CDS |
| AAACTTGAAAACAAAGGAGA+TGG | 0.522636 | 1_4:-9258567 | Msa0148790:CDS |
| ACGTCTATCCGTGGCTGCGA+GGG | 0.526538 | 1_4:-9259608 | Msa0148790:CDS |
| TAGCTATCAGCTTCAACGCT+CGG | 0.528239 | 1_4:+9258242 | None:intergenic |
| CTAGTAGGGTCCTCCGAAAG+TGG | 0.529235 | 1_4:+9258644 | None:intergenic |
| GTCTTTGAAGGAAGAAGAGA+TGG | 0.530883 | 1_4:-9259797 | Msa0148790:CDS |
| TATCTGTCATGTATTTGTGC+AGG | 0.534353 | 1_4:-9257918 | Msa0148790:three_prime_UTR |
| TGGCTGAACTTGCAGACCAA+AGG | 0.536581 | 1_4:-9259324 | Msa0148790:CDS |
| ACAGGATTTGTCCGTAGAGA+AGG | 0.537064 | 1_4:-9259197 | Msa0148790:CDS |
| ACTTGGAACTTTCAAGTGCT+AGG | 0.537214 | 1_4:-9258946 | Msa0148790:CDS |
| CTTCATAAGCTCCTTCTCTA+CGG | 0.541192 | 1_4:+9259186 | None:intergenic |
| CTGACTCTTTGACATCAAGA+AGG | 0.541859 | 1_4:+9259047 | None:intergenic |
| AATGGTGTATGCTATGACGC+AGG | 0.542611 | 1_4:-9258411 | Msa0148790:CDS |
| CTGGTTCCTCTCCTATCATC+CGG | 0.543300 | 1_4:+9260118 | None:intergenic |
| TTCAACATCCCTCGCAGCCA+CGG | 0.543338 | 1_4:+9259600 | None:intergenic |
| AATTGAGAAGCTTCAGCTTG+AGG | 0.546672 | 1_4:-9258354 | Msa0148790:CDS |
| GGAAAGTGTCATGTTGTACA+TGG | 0.547682 | 1_4:-9259302 | Msa0148790:CDS |
| AAAGCTGAAGGATGCGAAAG+AGG | 0.552340 | 1_4:-9259992 | Msa0148790:CDS |
| GCCAACTCAATTCACTAGTA+GGG | 0.553485 | 1_4:+9258630 | None:intergenic |
| TTTGGCTAAAAGGCATTGCA+AGG | 0.554688 | 1_4:-9258003 | Msa0148790:three_prime_UTR |
| ACCCTACTAGTGAATTGAGT+TGG | 0.555028 | 1_4:-9258631 | Msa0148790:CDS |
| AGATAGAGGAAATGAAGCTC+CGG | 0.558398 | 1_4:-9259864 | Msa0148790:CDS |
| GGAAGAGTTGAGAAAAGCAA+AGG | 0.558851 | 1_4:-9258465 | Msa0148790:CDS |
| GTGGCTGCGAGGGATGTTGA+AGG | 0.560868 | 1_4:-9259598 | Msa0148790:CDS |
| TTCAAGTGCTAGGAAGATGC+TGG | 0.563574 | 1_4:-9258936 | Msa0148790:CDS |
| ATCAGCTTCAACGCTCGGCA+TGG | 0.566649 | 1_4:+9258247 | None:intergenic |
| AAAAGATGTCGATGGAGGGA+GGG | 0.568749 | 1_4:+9261412 | None:intergenic |
| GAAAGATGCCCAAATAGAAG+TGG | 0.571824 | 1_4:-9259272 | Msa0148790:CDS |
| GGAACTCAAGAGACTGGAAG+AGG | 0.572397 | 1_4:-9259509 | Msa0148790:CDS |
| TTGCATTGACTGTTTGGCTG+TGG | 0.572710 | 1_4:-9258162 | Msa0148790:CDS |
| TGTCATATACACTAGTGGAA+TGG | 0.573280 | 1_4:+9257809 | None:intergenic |
| CTCAAGGAAGAAAAGGTCGT+TGG | 0.577956 | 1_4:-9260266 | Msa0148790:CDS |
| GAAGTAACAAACCTGAGAGT+AGG | 0.578102 | 1_4:+9261224 | None:intergenic |
| AAACAATAGCACGCTAGCGT+TGG | 0.578954 | 1_4:+9261345 | None:intergenic |
| GTTGGAGAATGGAAAGCTGA+AGG | 0.579685 | 1_4:-9260004 | Msa0148790:CDS |
| GTGCAAAATGCATTTACAGA+AGG | 0.579759 | 1_4:+9261306 | None:intergenic |
| TCTCTTGGAGGAGAAAGACT+TGG | 0.581096 | 1_4:-9258963 | Msa0148790:CDS |
| CTGTCATGTATTTGTGCAGG+TGG | 0.584392 | 1_4:-9257915 | Msa0148790:three_prime_UTR |
| CTGAGAGTAGGAAGGAGAAG+AGG | 0.586906 | 1_4:+9261236 | None:intergenic |
| GGCTTTCGAGGCCGAAACTG+TGG | 0.587517 | 1_4:-9258771 | Msa0148790:CDS |
| GAAGAAGAATTCTCAGGTGA+CGG | 0.591850 | 1_4:+9261536 | None:intergenic |
| AGAAATGGCTTCGCTTCAAG+AGG | 0.591969 | 1_4:-9259110 | Msa0148790:CDS |
| TACGTCTATCCGTGGCTGCG+AGG | 0.593135 | 1_4:-9259609 | Msa0148790:CDS |
| ATGGAGCGCCAGAATCTGCT+AGG | 0.595279 | 1_4:-9260182 | Msa0148790:CDS |
| GCTCCATAATTGTTAAAACT+AGG | 0.598816 | 1_4:+9260198 | None:intergenic |
| ACAAAATGCAAGTACAAGAA+GGG | 0.599552 | 1_4:-9259363 | Msa0148790:CDS |
| GTTGAATAATACAAGCCTGA+AGG | 0.600888 | 1_4:-9258792 | Msa0148790:CDS |
| ATTAATGATGCCACTTTCGG+AGG | 0.601136 | 1_4:-9258654 | Msa0148790:CDS |
| GAGTAGGAAGGAGAAGAGGT+AGG | 0.602593 | 1_4:+9261240 | None:intergenic |
| AAAGGTCGTTGGTTAAGGAA+TGG | 0.604287 | 1_4:-9260255 | Msa0148790:CDS |
| GCTCATGGAATTGAAGGAGA+AGG | 0.604339 | 1_4:-9260061 | Msa0148790:CDS |
| ACTCAAGAGACTGGAAGAGG+AGG | 0.605945 | 1_4:-9259506 | Msa0148790:CDS |
| TAACAAACCTGAGAGTAGGA+AGG | 0.606825 | 1_4:+9261228 | None:intergenic |
| TGGAAAAGCACACGATGGAG+TGG | 0.609324 | 1_4:-9259546 | Msa0148790:CDS |
| AGCTCTAACAATAAAAGATG+AGG | 0.610854 | 1_4:-9258525 | Msa0148790:CDS |
| GGAGTGGTTGTTAACACAAG+AGG | 0.610855 | 1_4:-9259530 | Msa0148790:CDS |
| CAAGGAAAACTTGAAAACAA+AGG | 0.617778 | 1_4:-9258573 | Msa0148790:CDS |
| AGATGAGATGAAGGAGGCGA+CGG | 0.624465 | 1_4:-9259911 | Msa0148790:CDS |
| TGACTCTTTGACATCAAGAA+GGG | 0.625792 | 1_4:+9259048 | None:intergenic |
| GATGCTGGTGGAACTAAACC+AGG | 0.625978 | 1_4:-9258921 | Msa0148790:CDS |
| GGAGAAAGATGACCATGTGA+AGG | 0.626967 | 1_4:-9258828 | Msa0148790:CDS |
| TGTTTGGCTGTGGTAAAAGC+AGG | 0.636480 | 1_4:-9258152 | Msa0148790:CDS |
| ATTGACAGAGCAGCTTGTGA+TGG | 0.636680 | 1_4:-9258111 | Msa0148790:CDS |
| CATGGAATTGAAGGAGAAGG+AGG | 0.638231 | 1_4:-9260058 | Msa0148790:CDS |
| AAACGCTAGAGAATTTCAGA+AGG | 0.644568 | 1_4:-9259456 | Msa0148790:CDS |
| CTGCTCGCGAGAAGTATGAG+AGG | 0.645894 | 1_4:-9259939 | Msa0148790:CDS |
| GTTGAGAAAAGCAAAGGACA+TGG | 0.655159 | 1_4:-9258459 | Msa0148790:CDS |
| AAGTGCTAGGAAGATGCTGG+TGG | 0.655984 | 1_4:-9258933 | Msa0148790:CDS |
| AGAAGAACTACGTCTATCCG+TGG | 0.663326 | 1_4:-9259617 | Msa0148790:CDS |
| TACAACGTTCCTCTGTGACG+TGG | 0.671813 | 1_4:+9258044 | None:intergenic |
| GCTTGAAGATGAGATGAAGG+AGG | 0.679304 | 1_4:-9259917 | Msa0148790:CDS |
| GGACAACCGGATGATAGGAG+AGG | 0.688688 | 1_4:-9260124 | Msa0148790:CDS |
| GCTTATGAAGAAGTTACAGG+AGG | 0.689307 | 1_4:-9259173 | Msa0148790:CDS |
| CTCTTTGGAAAAGCACACGA+TGG | 0.698049 | 1_4:-9259551 | Msa0148790:CDS |
| AACGCTAGAGAATTTCAGAA+GGG | 0.699020 | 1_4:-9259455 | Msa0148790:CDS |
| GAATGTGCTTGAGTTGACCA+AGG | 0.746422 | 1_4:-9258591 | Msa0148790:CDS |
| TAAAGGACGCCACGTCACAG+AGG | 0.758128 | 1_4:-9258053 | Msa0148790:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATTCAACTAAAAAAAT+TGG | - | chr1_4:9258421-9258440 | Msa0148790:CDS | 10.0% |
| !!! | TCAATATTTTAAAGCAAAAT+TGG | - | chr1_4:9258741-9258760 | Msa0148790:CDS | 15.0% |
| !! | TCTATATTATGTATAACTTA+TGG | - | chr1_4:9258822-9258841 | Msa0148790:CDS | 15.0% |
| !!! | TTGTATTATTCAACTTATTT+TGG | + | chr1_4:9260493-9260512 | None:intergenic | 15.0% |
| !! | GGTATATAATATAGAAAAAG+AGG | + | chr1_4:9258096-9258115 | None:intergenic | 20.0% |
| !!! | TATTAATACTGTTTCTGTTA+CGG | - | chr1_4:9258227-9258246 | Msa0148790:CDS | 20.0% |
| !! | TTGATTCTGTAAAAAATTGA+AGG | - | chr1_4:9258544-9258563 | Msa0148790:CDS | 20.0% |
| !!! | TAAATTGATTTTGACATGTT+TGG | + | chr1_4:9258677-9258696 | None:intergenic | 20.0% |
| !! | TATGAATGATGAATATTGAT+CGG | - | chr1_4:9258909-9258928 | Msa0148790:CDS | 20.0% |
| !!! | TATAAAAAGTGCTGAATTTA+AGG | - | chr1_4:9260211-9260230 | Msa0148790:CDS | 20.0% |
| !! | TGATATTTGTGATTAAATTG+AGG | + | chr1_4:9261108-9261127 | None:intergenic | 20.0% |
| !! | TTTGTATGTTGTAATCTATT+TGG | - | chr1_4:9261270-9261289 | Msa0148790:CDS | 20.0% |
| !!! | AAGAAAAAGTTTTGTTTGAG+AGG | + | chr1_4:9257783-9257802 | None:intergenic | 25.0% |
| !! | CTACTACTATTAAACTTTTG+TGG | - | chr1_4:9257811-9257830 | Msa0148790:three_prime_UTR | 25.0% |
| ! | AAGGAAACAGAAAAAACAAA+AGG | + | chr1_4:9258117-9258136 | None:intergenic | 25.0% |
| ! | CAGAAACAGTATTAATATGA+AGG | + | chr1_4:9258224-9258243 | None:intergenic | 25.0% |
| !! | TCAAAATCAATTTTTGTCAC+GGG | + | chr1_4:9258504-9258523 | None:intergenic | 25.0% |
| !! | GTCAAAATCAATTTTTGTCA+CGG | + | chr1_4:9258505-9258524 | None:intergenic | 25.0% |
| ! | GTAAAAAATTGAAGGTAAAG+TGG | - | chr1_4:9258552-9258571 | Msa0148790:CDS | 25.0% |
| !!! | TACACTTGAACTCATTTTTT+AGG | + | chr1_4:9258600-9258619 | None:intergenic | 25.0% |
| !! | TGTGAATTTATTGTGCTTTT+AGG | - | chr1_4:9258798-9258817 | Msa0148790:CDS | 25.0% |
| !!! | AGACCTAGTTTTAACAATTA+TGG | - | chr1_4:9259090-9259109 | Msa0148790:CDS | 25.0% |
| !!! | AAATTGAGCTTCTAGAATTA+CGG | - | chr1_4:9259631-9259650 | Msa0148790:CDS | 25.0% |
| ! | ATTGATGTCTTCATTCTTAA+TGG | + | chr1_4:9260585-9260604 | None:intergenic | 25.0% |
| ! | ATCAATACCACTAAATGAAT+TGG | - | chr1_4:9260607-9260626 | Msa0148790:intron | 25.0% |
| ! | TCAATACCACTAAATGAATT+GGG | - | chr1_4:9260608-9260627 | Msa0148790:intron | 25.0% |
| ! | TTGTAATCTATTTGGCTAAA+AGG | - | chr1_4:9261278-9261297 | Msa0148790:exon | 25.0% |
| !!! | ATCTTATAACCTACTTTTTG+TGG | + | chr1_4:9261318-9261337 | None:intergenic | 25.0% |
| !! | TAAGATATTCACTTTGTTTG+CGG | - | chr1_4:9261332-9261351 | Msa0148790:five_prime_UTR | 25.0% |
| !! | TATTTTGTCATATACACTAG+TGG | + | chr1_4:9261490-9261509 | None:intergenic | 25.0% |
| AAGAGAAAAAAAGATGTCGA+TGG | + | chr1_4:9257890-9257909 | None:intergenic | 30.0% | |
| !! | TGTTACTTCAGTTAGTGTTT+TGG | - | chr1_4:9258474-9258493 | Msa0148790:CDS | 30.0% |
| TTAATGCAAGTTTGATGAGT+AGG | - | chr1_4:9258879-9258898 | Msa0148790:CDS | 30.0% | |
| TAATGCAAGTTTGATGAGTA+GGG | - | chr1_4:9258880-9258899 | Msa0148790:CDS | 30.0% | |
| ATATTGATCGGATCATGATT+TGG | - | chr1_4:9258921-9258940 | Msa0148790:CDS | 30.0% | |
| GAGTCACAACAAAATTGATT+TGG | + | chr1_4:9259008-9259027 | None:intergenic | 30.0% | |
| !! | ATCAATTTTGTTGTGACTCA+AGG | - | chr1_4:9259009-9259028 | Msa0148790:CDS | 30.0% |
| GCTCCATAATTGTTAAAACT+AGG | + | chr1_4:9259096-9259115 | None:intergenic | 30.0% | |
| !! | AGATCTTTGTGATTTTGAGT+CGG | - | chr1_4:9259194-9259213 | Msa0148790:CDS | 30.0% |
| ! | ATAGTGAGATTGATGGTTTA+CGG | - | chr1_4:9259463-9259482 | Msa0148790:CDS | 30.0% |
| TACAAAATGCAAGTACAAGA+AGG | - | chr1_4:9259927-9259946 | Msa0148790:CDS | 30.0% | |
| ACAAAATGCAAGTACAAGAA+GGG | - | chr1_4:9259928-9259947 | Msa0148790:CDS | 30.0% | |
| AGAACGAAAGAACAAAACTT+AGG | - | chr1_4:9260042-9260061 | Msa0148790:CDS | 30.0% | |
| GAACGAAAGAACAAAACTTA+GGG | - | chr1_4:9260043-9260062 | Msa0148790:CDS | 30.0% | |
| TTTGAATAAAGAACTCGAAC+AGG | - | chr1_4:9260076-9260095 | Msa0148790:CDS | 30.0% | |
| TTGAAGCAACCAATATGTTA+AGG | - | chr1_4:9260441-9260460 | Msa0148790:intron | 30.0% | |
| TGAAGCAACCAATATGTTAA+GGG | - | chr1_4:9260442-9260461 | Msa0148790:intron | 30.0% | |
| ATCTTTCTCCCTTAACATAT+TGG | + | chr1_4:9260453-9260472 | None:intergenic | 30.0% | |
| !! | TATTTTGGATTACCTTCACA+TGG | + | chr1_4:9260478-9260497 | None:intergenic | 30.0% |
| !! | TCAATTAATGATGCCACTTT+CGG | - | chr1_4:9260634-9260653 | Msa0148790:intron | 30.0% |
| !! | AATTGAGTTGGCAACAAAAA+CGG | - | chr1_4:9260672-9260691 | Msa0148790:intron | 30.0% |
| !!! | CTTTGTTTTCAAGTTTTCCT+TGG | + | chr1_4:9260720-9260739 | None:intergenic | 30.0% |
| CAAGGAAAACTTGAAAACAA+AGG | - | chr1_4:9260718-9260737 | Msa0148790:intron | 30.0% | |
| AAACTTGAAAACAAAGGAGA+TGG | - | chr1_4:9260724-9260743 | Msa0148790:intron | 30.0% | |
| ! | AGCTCTAACAATAAAAGATG+AGG | - | chr1_4:9260766-9260785 | Msa0148790:intron | 30.0% |
| TAAAATGACTCTTGCAAGAT+TGG | - | chr1_4:9260793-9260812 | Msa0148790:intron | 30.0% | |
| AGATGCTAATGAGCATAAAA+TGG | - | chr1_4:9260862-9260881 | Msa0148790:intron | 30.0% | |
| !! | TATCAATTGCATTGACTGTT+TGG | - | chr1_4:9261123-9261142 | Msa0148790:intron | 30.0% |
| CAAGCTAAAAGACATGTTAA+AGG | - | chr1_4:9261221-9261240 | Msa0148790:intron | 30.0% | |
| GAAAAAAAGATGTCGATGGA+GGG | + | chr1_4:9257886-9257905 | None:intergenic | 35.0% | |
| AGAAAAAAAGATGTCGATGG+AGG | + | chr1_4:9257887-9257906 | None:intergenic | 35.0% | |
| GTGCAAAATGCATTTACAGA+AGG | + | chr1_4:9257988-9258007 | None:intergenic | 35.0% | |
| AGTCATAGCAATAGCGAATA+AGG | + | chr1_4:9258010-9258029 | None:intergenic | 35.0% | |
| GCGTGCATAAAAAATAACGA+AGG | + | chr1_4:9258136-9258155 | None:intergenic | 35.0% | |
| !! | GGTAAAGTGGTGTTTTTGTT+TGG | - | chr1_4:9258565-9258584 | Msa0148790:CDS | 35.0% |
| AATTGGTGAATTGTGAGATG+TGG | - | chr1_4:9258758-9258777 | Msa0148790:CDS | 35.0% | |
| GACTCAAAATCACAAAGATC+TGG | + | chr1_4:9259195-9259214 | None:intergenic | 35.0% | |
| !! | AGAACTGTTTTGTTGGAGAA+TGG | - | chr1_4:9259276-9259295 | Msa0148790:CDS | 35.0% |
| ! | CAGCTTTAATTTCACTCTCT+TGG | + | chr1_4:9259335-9259354 | None:intergenic | 35.0% |
| ! | TAGTGAGATTGATGGTTTAC+GGG | - | chr1_4:9259464-9259483 | Msa0148790:CDS | 35.0% |
| GAGATGGAGAAAATGAAGAT+TGG | - | chr1_4:9259510-9259529 | Msa0148790:CDS | 35.0% | |
| ! | GGAGAAAATGAAGATTGGTT+TGG | - | chr1_4:9259515-9259534 | Msa0148790:CDS | 35.0% |
| TGATTCTGAGCTTAGACAAA+AGG | - | chr1_4:9259566-9259585 | Msa0148790:CDS | 35.0% | |
| TGTTGAAGGAGAAAAACTCA+AGG | - | chr1_4:9259707-9259726 | Msa0148790:CDS | 35.0% | |
| AAACGCTAGAGAATTTCAGA+AGG | - | chr1_4:9259835-9259854 | Msa0148790:CDS | 35.0% | |
| AACGCTAGAGAATTTCAGAA+GGG | - | chr1_4:9259836-9259855 | Msa0148790:CDS | 35.0% | |
| TTCGTTCTCCACTTCTATTT+GGG | + | chr1_4:9260030-9260049 | None:intergenic | 35.0% | |
| TTTCGTTCTCCACTTCTATT+TGG | + | chr1_4:9260031-9260050 | None:intergenic | 35.0% | |
| GAAGAAAGAAAGAGCTTCTT+TGG | - | chr1_4:9260145-9260164 | Msa0148790:CDS | 35.0% | |
| TGACTCTTTGACATCAAGAA+GGG | + | chr1_4:9260246-9260265 | None:intergenic | 35.0% | |
| ! | CCTTTTCAGTTTTCAATTCC+TGG | + | chr1_4:9260295-9260314 | None:intergenic | 35.0% |
| CCAGGAATTGAAAACTGAAA+AGG | - | chr1_4:9260292-9260311 | Msa0148790:CDS | 35.0% | |
| TCTTAAGATCAGAGATTTCC+TGG | + | chr1_4:9260391-9260410 | None:intergenic | 35.0% | |
| GTTGAATAATACAAGCCTGA+AGG | - | chr1_4:9260499-9260518 | Msa0148790:intron | 35.0% | |
| TGATCACCCAATTCATTTAG+TGG | + | chr1_4:9260617-9260636 | None:intergenic | 35.0% | |
| ! | GAGTCAACAACTTTTGAACA+AGG | - | chr1_4:9261021-9261040 | Msa0148790:intron | 35.0% |
| CAAGGTTAACCACAAAAAGT+AGG | - | chr1_4:9261306-9261325 | Msa0148790:five_prime_UTR | 35.0% | |
| TATCTGTCATGTATTTGTGC+AGG | - | chr1_4:9261373-9261392 | Msa0148790:five_prime_UTR | 35.0% | |
| TGTCATATACACTAGTGGAA+TGG | + | chr1_4:9261485-9261504 | None:intergenic | 35.0% | |
| ! | TTTTCTGCATTCAACTACTC+TGG | - | chr1_4:9261533-9261552 | Msa0148790:five_prime_UTR | 35.0% |
| GAAGAAGAATTCTCAGGTGA+CGG | + | chr1_4:9257758-9257777 | None:intergenic | 40.0% | |
| GAGGTAGAAGAAGAATTCTC+AGG | + | chr1_4:9257764-9257783 | None:intergenic | 40.0% | |
| TAACAAACCTGAGAGTAGGA+AGG | + | chr1_4:9258066-9258085 | None:intergenic | 40.0% | |
| GAAGTAACAAACCTGAGAGT+AGG | + | chr1_4:9258070-9258089 | None:intergenic | 40.0% | |
| ! | CTGTTACGGACTGTGATTTA+CGG | - | chr1_4:9258241-9258260 | Msa0148790:CDS | 40.0% |
| GTGAATTGTGAGATGTGGAA+TGG | - | chr1_4:9258763-9258782 | Msa0148790:CDS | 40.0% | |
| ! | GATCGGATCATGATTTGGAA+TGG | - | chr1_4:9258926-9258945 | Msa0148790:CDS | 40.0% |
| TGTGCTCTCTTAGGTACAAT+AGG | - | chr1_4:9258971-9258990 | Msa0148790:CDS | 40.0% | |
| GTTGTGACTCAAGGAAGAAA+AGG | - | chr1_4:9259018-9259037 | Msa0148790:CDS | 40.0% | |
| ! | GAAGAAAAGGTCGTTGGTTA+AGG | - | chr1_4:9259031-9259050 | Msa0148790:CDS | 40.0% |
| ! | AAAGGTCGTTGGTTAAGGAA+TGG | - | chr1_4:9259036-9259055 | Msa0148790:CDS | 40.0% |
| ! | AGTGGAGAGAACTGTTTTGT+TGG | - | chr1_4:9259269-9259288 | Msa0148790:CDS | 40.0% |
| AGATAGAGGAAATGAAGCTC+CGG | - | chr1_4:9259427-9259446 | Msa0148790:CDS | 40.0% | |
| ! | GATCGTGATAGTGAGATTGA+TGG | - | chr1_4:9259456-9259475 | Msa0148790:CDS | 40.0% |
| ! | GTCTTTGAAGGAAGAAGAGA+TGG | - | chr1_4:9259494-9259513 | Msa0148790:CDS | 40.0% |
| AGAAAAACTCAAGGTTGCAG+AGG | - | chr1_4:9259716-9259735 | Msa0148790:CDS | 40.0% | |
| ACAACATGACACTTTCCCTT+TGG | + | chr1_4:9259986-9260005 | None:intergenic | 40.0% | |
| !! | GGAAAGTGTCATGTTGTACA+TGG | - | chr1_4:9259989-9260008 | Msa0148790:CDS | 40.0% |
| GAAAGATGCCCAAATAGAAG+TGG | - | chr1_4:9260019-9260038 | Msa0148790:CDS | 40.0% | |
| CTTCATAAGCTCCTTCTCTA+CGG | + | chr1_4:9260108-9260127 | None:intergenic | 40.0% | |
| GGAGCTTATGAAGAAGTTAC+AGG | - | chr1_4:9260115-9260134 | Msa0148790:CDS | 40.0% | |
| GCTTATGAAGAAGTTACAGG+AGG | - | chr1_4:9260118-9260137 | Msa0148790:CDS | 40.0% | |
| CTGACTCTTTGACATCAAGA+AGG | + | chr1_4:9260247-9260266 | None:intergenic | 40.0% | |
| TGATGCTAAGCTACAAATCC+AGG | - | chr1_4:9260274-9260293 | Msa0148790:CDS | 40.0% | |
| ! | ACTTGGAACTTTCAAGTGCT+AGG | - | chr1_4:9260345-9260364 | Msa0148790:intron | 40.0% |
| AACTCGTTCAACCACAGTTT+CGG | + | chr1_4:9260534-9260553 | None:intergenic | 40.0% | |
| !! | ATTAATGATGCCACTTTCGG+AGG | - | chr1_4:9260637-9260656 | Msa0148790:intron | 40.0% |
| ACCCTACTAGTGAATTGAGT+TGG | - | chr1_4:9260660-9260679 | Msa0148790:intron | 40.0% | |
| GCCAACTCAATTCACTAGTA+GGG | + | chr1_4:9260664-9260683 | None:intergenic | 40.0% | |
| TGCCAACTCAATTCACTAGT+AGG | + | chr1_4:9260665-9260684 | None:intergenic | 40.0% | |
| TGCAAGATTGGATGCAAAAG+AGG | - | chr1_4:9260805-9260824 | Msa0148790:intron | 40.0% | |
| GGAAGAGTTGAGAAAAGCAA+AGG | - | chr1_4:9260826-9260845 | Msa0148790:intron | 40.0% | |
| GTTGAGAAAAGCAAAGGACA+TGG | - | chr1_4:9260832-9260851 | Msa0148790:intron | 40.0% | |
| CGAGAAAACTATGGATGACT+TGG | - | chr1_4:9260913-9260932 | Msa0148790:intron | 40.0% | |
| AATTGAGAAGCTTCAGCTTG+AGG | - | chr1_4:9260937-9260956 | Msa0148790:intron | 40.0% | |
| !! | TTTGGCTAAAAGGCATTGCA+AGG | - | chr1_4:9261288-9261307 | Msa0148790:exon | 40.0% |
| ATGGAGGGAGGGAAAAGTTA+TGG | + | chr1_4:9257871-9257890 | None:intergenic | 45.0% | |
| AAAAGATGTCGATGGAGGGA+GGG | + | chr1_4:9257882-9257901 | None:intergenic | 45.0% | |
| AAAAAGATGTCGATGGAGGG+AGG | + | chr1_4:9257883-9257902 | None:intergenic | 45.0% | |
| AAACAATAGCACGCTAGCGT+TGG | + | chr1_4:9257949-9257968 | None:intergenic | 45.0% | |
| TTCCACATCTCACTGTTCGA+AGG | - | chr1_4:9258701-9258720 | Msa0148790:CDS | 45.0% | |
| TCCACATCTCACTGTTCGAA+GGG | - | chr1_4:9258702-9258721 | Msa0148790:CDS | 45.0% | |
| GCAAGTTTGATGAGTAGGGT+TGG | - | chr1_4:9258884-9258903 | Msa0148790:CDS | 45.0% | |
| TGCAGTTGTTGTGCTCTCTT+AGG | - | chr1_4:9258962-9258981 | Msa0148790:CDS | 45.0% | |
| CTCAAGGAAGAAAAGGTCGT+TGG | - | chr1_4:9259025-9259044 | Msa0148790:CDS | 45.0% | |
| GTTTGAGCAGACACAGAAGT+TGG | - | chr1_4:9259146-9259165 | Msa0148790:CDS | 45.0% | |
| AGACACAGAAGTTGGACAAC+CGG | - | chr1_4:9259154-9259173 | Msa0148790:CDS | 45.0% | |
| AAGTTGGACAACCGGATGAT+AGG | - | chr1_4:9259162-9259181 | Msa0148790:CDS | 45.0% | |
| GCTCATGGAATTGAAGGAGA+AGG | - | chr1_4:9259230-9259249 | Msa0148790:CDS | 45.0% | |
| CATGGAATTGAAGGAGAAGG+AGG | - | chr1_4:9259233-9259252 | Msa0148790:CDS | 45.0% | |
| GGAGAAGGAGGATCATTTAC+AGG | - | chr1_4:9259245-9259264 | Msa0148790:CDS | 45.0% | |
| GGAGGATCATTTACAGGAAG+TGG | - | chr1_4:9259251-9259270 | Msa0148790:CDS | 45.0% | |
| GTTGGAGAATGGAAAGCTGA+AGG | - | chr1_4:9259287-9259306 | Msa0148790:CDS | 45.0% | |
| AAAGCTGAAGGATGCGAAAG+AGG | - | chr1_4:9259299-9259318 | Msa0148790:CDS | 45.0% | |
| GAGGCTTGAAGATGAGATGA+AGG | - | chr1_4:9259371-9259390 | Msa0148790:CDS | 45.0% | |
| GCTTGAAGATGAGATGAAGG+AGG | - | chr1_4:9259374-9259393 | Msa0148790:CDS | 45.0% | |
| ! | GCTAGTTTGGTTTCTCAAGC+TGG | - | chr1_4:9259402-9259421 | Msa0148790:CDS | 45.0% |
| TTCTCAAGCTGGACAGATAG+AGG | - | chr1_4:9259413-9259432 | Msa0148790:CDS | 45.0% | |
| AGAAGAACTACGTCTATCCG+TGG | - | chr1_4:9259674-9259693 | Msa0148790:CDS | 45.0% | |
| ! | CATCGTGTGCTTTTCCAAAG+AGG | + | chr1_4:9259742-9259761 | None:intergenic | 45.0% |
| ! | CTCTTTGGAAAAGCACACGA+TGG | - | chr1_4:9259740-9259759 | Msa0148790:CDS | 45.0% |
| GGAGTGGTTGTTAACACAAG+AGG | - | chr1_4:9259761-9259780 | Msa0148790:CDS | 45.0% | |
| ACAAGAGGAACTCAAGAGAC+TGG | - | chr1_4:9259776-9259795 | Msa0148790:CDS | 45.0% | |
| AGAAGCTTCTCAGTGATGTC+AGG | - | chr1_4:9259862-9259881 | Msa0148790:CDS | 45.0% | |
| AGCAATCGCTTGCATCTTCT+AGG | - | chr1_4:9259904-9259923 | Msa0148790:CDS | 45.0% | |
| GCAAGTACAAGAAGGGTTGT+TGG | - | chr1_4:9259935-9259954 | Msa0148790:CDS | 45.0% | |
| ACAGGATTTGTCCGTAGAGA+AGG | - | chr1_4:9260094-9260113 | Msa0148790:CDS | 45.0% | |
| !! | AGAAAGAGCTTCTTTGGAGC+AGG | - | chr1_4:9260151-9260170 | Msa0148790:CDS | 45.0% |
| CTTGAAGCGAAGCCATTTCT+TGG | + | chr1_4:9260181-9260200 | None:intergenic | 45.0% | |
| AGAAATGGCTTCGCTTCAAG+AGG | - | chr1_4:9260181-9260200 | Msa0148790:CDS | 45.0% | |
| TTCTCTTCAGTCTCTCTTGG+AGG | - | chr1_4:9260316-9260335 | Msa0148790:CDS | 45.0% | |
| TCTCTTGGAGGAGAAAGACT+TGG | - | chr1_4:9260328-9260347 | Msa0148790:intron | 45.0% | |
| TTCAAGTGCTAGGAAGATGC+TGG | - | chr1_4:9260355-9260374 | Msa0148790:intron | 45.0% | |
| GGAGAAAGATGACCATGTGA+AGG | - | chr1_4:9260463-9260482 | Msa0148790:intron | 45.0% | |
| !! | GAATGTGCTTGAGTTGACCA+AGG | - | chr1_4:9260700-9260719 | Msa0148790:intron | 45.0% |
| AATGGTGTATGCTATGACGC+AGG | - | chr1_4:9260880-9260899 | Msa0148790:intron | 45.0% | |
| GAGAATCGGCGAGAAAACTA+TGG | - | chr1_4:9260904-9260923 | Msa0148790:intron | 45.0% | |
| TAGCTATCAGCTTCAACGCT+CGG | + | chr1_4:9261052-9261071 | None:intergenic | 45.0% | |
| !! | TTGCATTGACTGTTTGGCTG+TGG | - | chr1_4:9261129-9261148 | Msa0148790:intron | 45.0% |
| TGTTTGGCTGTGGTAAAAGC+AGG | - | chr1_4:9261139-9261158 | Msa0148790:intron | 45.0% | |
| ATTGACAGAGCAGCTTGTGA+TGG | - | chr1_4:9261180-9261199 | Msa0148790:intron | 45.0% | |
| CTGTCATGTATTTGTGCAGG+TGG | - | chr1_4:9261376-9261395 | Msa0148790:five_prime_UTR | 45.0% | |
| AGCAGCAGAAGTCATTGCTT+TGG | + | chr1_4:9261566-9261585 | None:intergenic | 45.0% | |
| ! | GAATTCTCAGGTGACGGTCT+TGG | + | chr1_4:9257752-9257771 | None:intergenic | 50.0% |
| ! | CGCTAGCGTGCTATTGTTTC+TGG | - | chr1_4:9257950-9257969 | Msa0148790:three_prime_UTR | 50.0% |
| GAGTAGGAAGGAGAAGAGGT+AGG | + | chr1_4:9258054-9258073 | None:intergenic | 50.0% | |
| CTGAGAGTAGGAAGGAGAAG+AGG | + | chr1_4:9258058-9258077 | None:intergenic | 50.0% | |
| CTCTTCTCCTTCCTACTCTC+AGG | - | chr1_4:9258056-9258075 | Msa0148790:three_prime_UTR | 50.0% | |
| TCCCTTCGAACAGTGAGATG+TGG | + | chr1_4:9258706-9258725 | None:intergenic | 50.0% | |
| TCGAGAAGCCTAGCAGATTC+TGG | + | chr1_4:9259120-9259139 | None:intergenic | 50.0% | |
| CTGGTTCCTCTCCTATCATC+CGG | + | chr1_4:9259176-9259195 | None:intergenic | 50.0% | |
| ! | GGATCTTTTGTCTGCGCTCA+TGG | - | chr1_4:9259215-9259234 | Msa0148790:CDS | 50.0% |
| GTCTGCGCTCATGGAATTGA+AGG | - | chr1_4:9259224-9259243 | Msa0148790:CDS | 50.0% | |
| AGATGAGATGAAGGAGGCGA+CGG | - | chr1_4:9259380-9259399 | Msa0148790:CDS | 50.0% | |
| AGGAAATGAAGCTCCGGCTT+AGG | - | chr1_4:9259433-9259452 | Msa0148790:CDS | 50.0% | |
| GGAAATGAAGCTCCGGCTTA+GGG | - | chr1_4:9259434-9259453 | Msa0148790:CDS | 50.0% | |
| CACTATCACGATCCCTAAGC+CGG | + | chr1_4:9259449-9259468 | None:intergenic | 50.0% | |
| ! | TGGAAAAGCACACGATGGAG+TGG | - | chr1_4:9259745-9259764 | Msa0148790:CDS | 50.0% |
| GGAACTCAAGAGACTGGAAG+AGG | - | chr1_4:9259782-9259801 | Msa0148790:CDS | 50.0% | |
| ACTCAAGAGACTGGAAGAGG+AGG | - | chr1_4:9259785-9259804 | Msa0148790:CDS | 50.0% | |
| TGGCTGAACTTGCAGACCAA+AGG | - | chr1_4:9259967-9259986 | Msa0148790:CDS | 50.0% | |
| GGCTGAACTTGCAGACCAAA+GGG | - | chr1_4:9259968-9259987 | Msa0148790:CDS | 50.0% | |
| GGCTTCTCTTCAGTCTCTCT+TGG | - | chr1_4:9260313-9260332 | Msa0148790:CDS | 50.0% | |
| AAGTGCTAGGAAGATGCTGG+TGG | - | chr1_4:9260358-9260377 | Msa0148790:intron | 50.0% | |
| GATGCTGGTGGAACTAAACC+AGG | - | chr1_4:9260370-9260389 | Msa0148790:intron | 50.0% | |
| TACAAGCCTGAAGGCTTTCG+AGG | - | chr1_4:9260508-9260527 | Msa0148790:intron | 50.0% | |
| GAGTTGGCAACAAAAACGGC+TGG | - | chr1_4:9260676-9260695 | Msa0148790:intron | 50.0% | |
| GCTATGACGCAGGAGAGAAT+CGG | - | chr1_4:9260890-9260909 | Msa0148790:intron | 50.0% | |
| TACAACGTTCCTCTGTGACG+TGG | + | chr1_4:9261250-9261269 | None:intergenic | 50.0% | |
| ! | ATGGAGCGCCAGAATCTGCT+AGG | - | chr1_4:9259109-9259128 | Msa0148790:CDS | 55.0% |
| GGACAACCGGATGATAGGAG+AGG | - | chr1_4:9259167-9259186 | Msa0148790:CDS | 55.0% | |
| ! | CTGCTCGCGAGAAGTATGAG+AGG | - | chr1_4:9259352-9259371 | Msa0148790:CDS | 55.0% |
| ACGGGATGCGCTGTCTTTGA+AGG | - | chr1_4:9259482-9259501 | Msa0148790:CDS | 55.0% | |
| TTCAACATCCCTCGCAGCCA+CGG | + | chr1_4:9259694-9259713 | None:intergenic | 55.0% | |
| CAAGGTTGCAGAGGCCTCTT+TGG | - | chr1_4:9259725-9259744 | Msa0148790:CDS | 55.0% | |
| GACTGGAAGAGGAGGCTTCA+AGG | - | chr1_4:9259793-9259812 | Msa0148790:CDS | 55.0% | |
| AGGGTTGTTGGAACAGCAGC+TGG | - | chr1_4:9259947-9259966 | Msa0148790:CDS | 55.0% | |
| GGAGCAGGCTGTCCAAGAAA+TGG | - | chr1_4:9260166-9260185 | Msa0148790:CDS | 55.0% | |
| TTTCGGCCTCGAAAGCCTTC+AGG | + | chr1_4:9260517-9260536 | None:intergenic | 55.0% | |
| CTAGTAGGGTCCTCCGAAAG+TGG | + | chr1_4:9260650-9260669 | None:intergenic | 55.0% | |
| ATCAGCTTCAACGCTCGGCA+TGG | + | chr1_4:9261047-9261066 | None:intergenic | 55.0% | |
| AGCAGGAGTTGCTCGACTCT+CGG | - | chr1_4:9261156-9261175 | Msa0148790:intron | 55.0% | |
| !! | GAGCAGCTTGTGATGGATGC+AGG | - | chr1_4:9261187-9261206 | Msa0148790:intron | 55.0% |
| TAAAGGACGCCACGTCACAG+AGG | - | chr1_4:9261238-9261257 | Msa0148790:CDS | 55.0% | |
| ! | GAAGGAGGCGACGGCTAGTT+TGG | - | chr1_4:9259389-9259408 | Msa0148790:CDS | 60.0% |
| TACGTCTATCCGTGGCTGCG+AGG | - | chr1_4:9259682-9259701 | Msa0148790:CDS | 60.0% | |
| ACGTCTATCCGTGGCTGCGA+GGG | - | chr1_4:9259683-9259702 | Msa0148790:CDS | 60.0% | |
| GTGGCTGCGAGGGATGTTGA+AGG | - | chr1_4:9259693-9259712 | Msa0148790:CDS | 60.0% | |
| GGAGGCTTCAAGGCATGCAC+AGG | - | chr1_4:9259803-9259822 | Msa0148790:CDS | 60.0% | |
| GGCTTTCGAGGCCGAAACTG+TGG | - | chr1_4:9260520-9260539 | Msa0148790:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 9257727 | 9261586 | 9257727 | ID=Msa0148790;Name=Msa0148790 |
| chr1_4 | mRNA | 9257727 | 9261586 | 9257727 | ID=Msa0148790-mRNA-1;Parent=Msa0148790;Name=Msa0148790-mRNA-1;_AED=0.00;_eAED=0.00;_QI=297|1|1|1|1|1|2|358|771 |
| chr1_4 | exon | 9257727 | 9260346 | 9257727 | ID=Msa0148790-mRNA-1:exon:3901;Parent=Msa0148790-mRNA-1 |
| chr1_4 | exon | 9261236 | 9261586 | 9261236 | ID=Msa0148790-mRNA-1:exon:3900;Parent=Msa0148790-mRNA-1 |
| chr1_4 | five_prime_UTR | 9261290 | 9261586 | 9261290 | ID=Msa0148790-mRNA-1:five_prime_utr;Parent=Msa0148790-mRNA-1 |
| chr1_4 | CDS | 9261236 | 9261289 | 9261236 | ID=Msa0148790-mRNA-1:cds;Parent=Msa0148790-mRNA-1 |
| chr1_4 | CDS | 9258085 | 9260346 | 9258085 | ID=Msa0148790-mRNA-1:cds;Parent=Msa0148790-mRNA-1 |
| chr1_4 | three_prime_UTR | 9257727 | 9258084 | 9257727 | ID=Msa0148790-mRNA-1:three_prime_utr;Parent=Msa0148790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
