Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0101130 | XP_024631024.1 | 96.628 | 771 | 26 | 0 | 1 | 771 | 1 | 771 | 0.0 | 1456 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0101130 | A0A396JFC3 | 96.628 | 771 | 26 | 0 | 1 | 771 | 1 | 771 | 0.0 | 1456 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002730 | Msa0101130 | 0.909732 | 4.113375e-82 | -8.615850e-47 |
| Msa0006640 | Msa0101130 | 0.963279 | 6.842328e-122 | -8.615850e-47 |
| Msa0101130 | Msa0148790 | 0.988384 | 8.292746e-174 | -8.615850e-47 |
| Msa0101130 | Msa0479120 | -0.816534 | 5.263905e-52 | -8.615850e-47 |
| Msa0101130 | Msa0768810 | 0.864112 | 1.536668e-64 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0101130 | MtrunA17_Chr1g0149461 | 96.628 | 771 | 26 | 0 | 1 | 771 | 1 | 771 | 0.0 | 1456 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0101130 | AT4G32190.1 | 46.574 | 788 | 390 | 11 | 1 | 771 | 1 | 774 | 3.79e-178 | 530 |
Find 165 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCTAGCGTGCTATTGTTTC+TGG | 0.076171 | 1_3:-7605442 | Msa0101130:five_prime_UTR |
| ATTGATGTCTTCATTCTTAA+TGG | 0.150281 | 1_3:+7602810 | None:intergenic |
| CTTGAAGCGAAGCCATTTCT+TGG | 0.183967 | 1_3:+7603214 | None:intergenic |
| TTGTATTATTCAACTTATTT+TGG | 0.204495 | 1_3:+7602902 | None:intergenic |
| TTTCGTTCTCCACTTCTATT+TGG | 0.209735 | 1_3:+7603364 | None:intergenic |
| TTGTAATCTATTTGGCTAAA+AGG | 0.210144 | 1_3:-7602114 | Msa0101130:three_prime_UTR |
| GAAGAAAGAAAGAGCTTCTT+TGG | 0.211625 | 1_3:-7603247 | Msa0101130:CDS |
| CAAGGTTGCAGAGGCCTCTT+TGG | 0.261894 | 1_3:-7603667 | Msa0101130:CDS |
| ATCAATACCACTAAATGAAT+TGG | 0.277257 | 1_3:-7602785 | Msa0101130:CDS |
| TAAAATGACTCTTGCAAGAT+TGG | 0.293172 | 1_3:-7602599 | Msa0101130:CDS |
| ATCTTTCTCCCTTAACATAT+TGG | 0.298583 | 1_3:+7602942 | None:intergenic |
| GAAGGAGGCGACGGCTAGTT+TGG | 0.320741 | 1_3:-7604003 | Msa0101130:CDS |
| TTTGTATGTTGTAATCTATT+TGG | 0.321922 | 1_3:-7602122 | Msa0101130:three_prime_UTR |
| TCGAGAAGCCTAGCAGATTC+TGG | 0.328588 | 1_3:+7604275 | None:intergenic |
| TGCAGTTGTTGTGCTCTCTT+AGG | 0.332854 | 1_3:-7604430 | Msa0101130:intron |
| AGTCATAGCAATAGCGAATA+AGG | 0.335485 | 1_3:+7605385 | None:intergenic |
| TTCGTTCTCCACTTCTATTT+GGG | 0.342748 | 1_3:+7603365 | None:intergenic |
| TTTCGGCCTCGAAAGCCTTC+AGG | 0.344280 | 1_3:+7602878 | None:intergenic |
| CAGCTTTAATTTCACTCTCT+TGG | 0.346685 | 1_3:+7604060 | None:intergenic |
| CAAGCTAAAAGACATGTTAA+AGG | 0.351508 | 1_3:-7602171 | Msa0101130:exon |
| TGATCACCCAATTCATTTAG+TGG | 0.352770 | 1_3:+7602778 | None:intergenic |
| TTGAAGCAACCAATATGTTA+AGG | 0.356086 | 1_3:-7602951 | Msa0101130:CDS |
| GAGTCACAACAAAATTGATT+TGG | 0.357750 | 1_3:+7604387 | None:intergenic |
| TCTTAAGATCAGAGATTTCC+TGG | 0.358030 | 1_3:+7603004 | None:intergenic |
| TATCAATTGCATTGACTGTT+TGG | 0.359145 | 1_3:-7602269 | Msa0101130:CDS |
| AGATGCTAATGATCATAAAA+TGG | 0.364070 | 1_3:-7602530 | Msa0101130:CDS |
| GGAGAAGGAGGATCATTTAC+AGG | 0.372000 | 1_3:-7604147 | Msa0101130:CDS |
| AGGAAATGAAGCTCCGGCTT+AGG | 0.372074 | 1_3:-7603959 | Msa0101130:CDS |
| CTCTTCTCCTTCCTACTCTC+AGG | 0.372331 | 1_3:-7605336 | Msa0101130:intron |
| AACTCGTTCAACCACAGTTT+CGG | 0.374671 | 1_3:+7602861 | None:intergenic |
| TGTGCTCTCTTAGGTACAAT+AGG | 0.375275 | 1_3:-7604421 | Msa0101130:CDS |
| AAATTGAGCTTCTAGAATTA+CGG | 0.387513 | 1_3:-7603761 | Msa0101130:CDS |
| GGAAATGAAGCTCCGGCTTA+GGG | 0.388122 | 1_3:-7603958 | Msa0101130:CDS |
| GAAGAAAAGGTCGTTGGTTA+AGG | 0.395609 | 1_3:-7604361 | Msa0101130:CDS |
| ATAGTGAGATTGATGGTTTA+CGG | 0.396914 | 1_3:-7603929 | Msa0101130:CDS |
| GTCTGCGCTCATGGAATTGA+AGG | 0.397775 | 1_3:-7604168 | Msa0101130:CDS |
| GGCTTCTCTTCAGTCTCTCT+TGG | 0.398610 | 1_3:-7603079 | Msa0101130:CDS |
| TCAATTAATGATGCCACTTT+CGG | 0.401307 | 1_3:-7602758 | Msa0101130:CDS |
| TAAGATATTCACTTTGTTTG+CGG | 0.405390 | 1_3:-7602060 | Msa0101130:three_prime_UTR |
| GAGATGGAGAAAATGAAGAT+TGG | 0.405764 | 1_3:-7603882 | Msa0101130:CDS |
| GGAGGATCATTTACAGGAAG+TGG | 0.406116 | 1_3:-7604141 | Msa0101130:CDS |
| GACTGGAAGAGGAGGCTTCA+AGG | 0.407228 | 1_3:-7603599 | Msa0101130:CDS |
| TGAAGCAACCAATATGTTAA+GGG | 0.412520 | 1_3:-7602950 | Msa0101130:CDS |
| TAGTGAGATTGATGGTTTAC+GGG | 0.413981 | 1_3:-7603928 | Msa0101130:CDS |
| AGCAGCAGAAGTCATTGCTT+TGG | 0.413989 | 1_3:+7601829 | None:intergenic |
| AGCAATCGCTTGCATCTTCT+AGG | 0.416362 | 1_3:-7603488 | Msa0101130:CDS |
| GAGAATCGGCGAGAAAACTA+TGG | 0.417613 | 1_3:-7602488 | Msa0101130:CDS |
| ACAACATGACACTTTCCCTT+TGG | 0.422560 | 1_3:+7603409 | None:intergenic |
| GGAGAAAATGAAGATTGGTT+TGG | 0.423670 | 1_3:-7603877 | Msa0101130:CDS |
| GAATTCTCAGGTGACGGTCT+TGG | 0.425271 | 1_3:+7605646 | None:intergenic |
| GGAGCAGGCTGTCCAAGAAA+TGG | 0.430948 | 1_3:-7603226 | Msa0101130:CDS |
| TTTGAATAAAGAACTCGAAC+AGG | 0.433509 | 1_3:-7603316 | Msa0101130:CDS |
| AAGTTGGACAACCGGATGAT+AGG | 0.434647 | 1_3:-7604230 | Msa0101130:CDS |
| GCTAGTTTGGTTTCTCAAGC+TGG | 0.442794 | 1_3:-7603990 | Msa0101130:CDS |
| TTCTCTTCAGTCTCTCTTGG+AGG | 0.443922 | 1_3:-7603076 | Msa0101130:CDS |
| GGAGCTTATGAAGAAGTTAC+AGG | 0.444266 | 1_3:-7603277 | Msa0101130:CDS |
| TGCCAACTCAATTCACTAGT+AGG | 0.444901 | 1_3:+7602730 | None:intergenic |
| ACGGGATGCGCTGTCTTTGA+AGG | 0.447564 | 1_3:-7603910 | Msa0101130:CDS |
| GATCGTGATAGTGAGATTGA+TGG | 0.456862 | 1_3:-7603936 | Msa0101130:CDS |
| TGATTCTGAGCTTAGACAAA+AGG | 0.457472 | 1_3:-7603826 | Msa0101130:CDS |
| TGATATTTGTGATTAAATTG+AGG | 0.464943 | 1_3:+7602287 | None:intergenic |
| TCAATACCACTAAATGAATT+GGG | 0.468024 | 1_3:-7602784 | Msa0101130:CDS |
| CGAGAAAACTATGGATGACT+TGG | 0.468169 | 1_3:-7602479 | Msa0101130:CDS |
| GTTGTGACTCAAGGAAGAAA+AGG | 0.469931 | 1_3:-7604374 | Msa0101130:CDS |
| CCAGGAATTGAAAACTGAAA+AGG | 0.470099 | 1_3:-7603100 | Msa0101130:CDS |
| GCAAGTACAAGAAGGGTTGT+TGG | 0.471519 | 1_3:-7603457 | Msa0101130:CDS |
| AGAAAGAGCTTCTTTGGAGC+AGG | 0.472671 | 1_3:-7603241 | Msa0101130:CDS |
| ATGGAGGGAGGGAAAAGTTA+TGG | 0.475948 | 1_3:+7605527 | None:intergenic |
| AGAACGAAAGAACAAAACTT+AGG | 0.479483 | 1_3:-7603350 | Msa0101130:CDS |
| GAGGCTTGAAGATGAGATGA+AGG | 0.479878 | 1_3:-7604021 | Msa0101130:CDS |
| AGGGTTGTTGGAACAGCAGC+TGG | 0.480838 | 1_3:-7603445 | Msa0101130:CDS |
| GGCTGAACTTGCAGACCAAA+GGG | 0.481085 | 1_3:-7603424 | Msa0101130:CDS |
| AGACACAAAAGTTGGACAAC+CGG | 0.482352 | 1_3:-7604238 | Msa0101130:CDS |
| TTCTCAAGCTGGACAGATAG+AGG | 0.486214 | 1_3:-7603979 | Msa0101130:CDS |
| TACAAGCCTGAAGGCTTTCG+AGG | 0.490119 | 1_3:-7602884 | Msa0101130:CDS |
| TGCAAGATTGGATGCAAAAG+AGG | 0.490164 | 1_3:-7602587 | Msa0101130:CDS |
| TACAAAATGCAAGTACAAGA+AGG | 0.505025 | 1_3:-7603465 | Msa0101130:CDS |
| TGATGCTAAGCTACAAATCC+AGG | 0.506835 | 1_3:-7603118 | Msa0101130:CDS |
| GACTCAAAATCACGAAGATC+TGG | 0.507607 | 1_3:+7604200 | None:intergenic |
| GAGCAGCTTGTGATGGATGC+AGG | 0.510253 | 1_3:-7602205 | Msa0101130:CDS |
| GAGGTAGAAGAAGAATTCTC+AGG | 0.511533 | 1_3:+7605634 | None:intergenic |
| AGAAGCTTCTCAGTGATGTC+AGG | 0.514810 | 1_3:-7603530 | Msa0101130:CDS |
| AGCAGGAGTTGCTCGACTCT+CGG | 0.517054 | 1_3:-7602236 | Msa0101130:CDS |
| CACTATCACGATCCCTAAGC+CGG | 0.519235 | 1_3:+7603946 | None:intergenic |
| GTTTGAGCAGACACAAAAGT+TGG | 0.519353 | 1_3:-7604246 | Msa0101130:CDS |
| GCTATGACGCAGGAGAGAAT+CGG | 0.519440 | 1_3:-7602502 | Msa0101130:CDS |
| GGAGGCTTCAAGGCATGCAC+AGG | 0.519791 | 1_3:-7603589 | Msa0101130:CDS |
| GAACGAAAGAACAAAACTTA+GGG | 0.519943 | 1_3:-7603349 | Msa0101130:CDS |
| ACAAGAGGAACTCAAGAGAC+TGG | 0.522581 | 1_3:-7603616 | Msa0101130:CDS |
| AAACTTGAAAACAAAGGAGA+TGG | 0.522636 | 1_3:-7602668 | Msa0101130:CDS |
| ACGTCTATCCGTGGCTGCGA+GGG | 0.526538 | 1_3:-7603709 | Msa0101130:CDS |
| TAGCTATCAGCTTCAACGCT+CGG | 0.528239 | 1_3:+7602343 | None:intergenic |
| CTAGTAGGGTCCTCCGAAAG+TGG | 0.529235 | 1_3:+7602745 | None:intergenic |
| GTCTTTGAAGGAAGAAGAGA+TGG | 0.530883 | 1_3:-7603898 | Msa0101130:CDS |
| TATCTGTCATGTATTTGTGC+AGG | 0.534353 | 1_3:-7602019 | Msa0101130:three_prime_UTR |
| TGGCTGAACTTGCAGACCAA+AGG | 0.536581 | 1_3:-7603425 | Msa0101130:CDS |
| ACAGGATTTGTCCGTAGAGA+AGG | 0.537064 | 1_3:-7603298 | Msa0101130:CDS |
| ACTTGGAACTTTCAAGTGCT+AGG | 0.537214 | 1_3:-7603047 | Msa0101130:CDS |
| CTTCATAAGCTCCTTCTCTA+CGG | 0.541192 | 1_3:+7603287 | None:intergenic |
| CTGACTCTTTGACATCAAGA+AGG | 0.541859 | 1_3:+7603148 | None:intergenic |
| AATGGTGTATGCTATGACGC+AGG | 0.542611 | 1_3:-7602512 | Msa0101130:CDS |
| CTGGTTCCTCTCCTATCATC+CGG | 0.543300 | 1_3:+7604219 | None:intergenic |
| TTCAACATCCCTCGCAGCCA+CGG | 0.543338 | 1_3:+7603701 | None:intergenic |
| AATTGAGAAGCTTCAGCTTG+AGG | 0.546672 | 1_3:-7602455 | Msa0101130:CDS |
| GGAAAGTGTCATGTTGTACA+TGG | 0.547682 | 1_3:-7603403 | Msa0101130:CDS |
| AAAGCTGAAGGATGCGAAAG+AGG | 0.552340 | 1_3:-7604093 | Msa0101130:CDS |
| GCCAACTCAATTCACTAGTA+GGG | 0.553485 | 1_3:+7602731 | None:intergenic |
| TTTGGCTAAAAGGCATTGCA+AGG | 0.554688 | 1_3:-7602104 | Msa0101130:three_prime_UTR |
| ACCCTACTAGTGAATTGAGT+TGG | 0.555028 | 1_3:-7602732 | Msa0101130:CDS |
| AGATAGAGGAAATGAAGCTC+CGG | 0.558398 | 1_3:-7603965 | Msa0101130:CDS |
| GGAAGAGTTGAGAAAAGCAA+AGG | 0.558851 | 1_3:-7602566 | Msa0101130:CDS |
| GTGGCTGCGAGGGATGTTGA+AGG | 0.560868 | 1_3:-7603699 | Msa0101130:CDS |
| TTCAAGTGCTAGGAAGATGC+TGG | 0.563574 | 1_3:-7603037 | Msa0101130:CDS |
| ATCAGCTTCAACGCTCGGCA+TGG | 0.566649 | 1_3:+7602348 | None:intergenic |
| AAAAGATGTCGATGGAGGGA+GGG | 0.568749 | 1_3:+7605516 | None:intergenic |
| GAAAGATGCCCAAATAGAAG+TGG | 0.571824 | 1_3:-7603373 | Msa0101130:CDS |
| GGAACTCAAGAGACTGGAAG+AGG | 0.572397 | 1_3:-7603610 | Msa0101130:CDS |
| TTGCATTGACTGTTTGGCTG+TGG | 0.572710 | 1_3:-7602263 | Msa0101130:CDS |
| TGTCATATACACTAGTGGAA+TGG | 0.573280 | 1_3:+7601910 | None:intergenic |
| CTCAAGGAAGAAAAGGTCGT+TGG | 0.577956 | 1_3:-7604367 | Msa0101130:CDS |
| GAAGTAACAAACCTGAGAGT+AGG | 0.578102 | 1_3:+7605325 | None:intergenic |
| AAACAATAGCACGCTAGCGT+TGG | 0.578954 | 1_3:+7605446 | None:intergenic |
| GTTGGAGAATGGAAAGCTGA+AGG | 0.579685 | 1_3:-7604105 | Msa0101130:CDS |
| GTGCAAAATGCATTTACAGA+AGG | 0.579759 | 1_3:+7605407 | None:intergenic |
| TCTCTTGGAGGAGAAAGACT+TGG | 0.581096 | 1_3:-7603064 | Msa0101130:CDS |
| CTGTCATGTATTTGTGCAGG+TGG | 0.584392 | 1_3:-7602016 | Msa0101130:three_prime_UTR |
| CTGAGAGTAGGAAGGAGAAG+AGG | 0.586906 | 1_3:+7605337 | None:intergenic |
| GGCTTTCGAGGCCGAAACTG+TGG | 0.587517 | 1_3:-7602872 | Msa0101130:CDS |
| GAAGAAGAATTCTCAGGTGA+CGG | 0.591850 | 1_3:+7605640 | None:intergenic |
| AGAAATGGCTTCGCTTCAAG+AGG | 0.591969 | 1_3:-7603211 | Msa0101130:CDS |
| TACGTCTATCCGTGGCTGCG+AGG | 0.593135 | 1_3:-7603710 | Msa0101130:CDS |
| ATGGAGCGCCAGAATCTGCT+AGG | 0.595279 | 1_3:-7604283 | Msa0101130:CDS |
| GCTCCATAATTGTTAAAACT+AGG | 0.598816 | 1_3:+7604299 | None:intergenic |
| ACAAAATGCAAGTACAAGAA+GGG | 0.599552 | 1_3:-7603464 | Msa0101130:CDS |
| GTTGAATAATACAAGCCTGA+AGG | 0.600888 | 1_3:-7602893 | Msa0101130:CDS |
| ATTAATGATGCCACTTTCGG+AGG | 0.601136 | 1_3:-7602755 | Msa0101130:CDS |
| GAGTAGGAAGGAGAAGAGGT+AGG | 0.602593 | 1_3:+7605341 | None:intergenic |
| AAAGGTCGTTGGTTAAGGAA+TGG | 0.604287 | 1_3:-7604356 | Msa0101130:CDS |
| GCTCATGGAATTGAAGGAGA+AGG | 0.604339 | 1_3:-7604162 | Msa0101130:CDS |
| ACTCAAGAGACTGGAAGAGG+AGG | 0.605945 | 1_3:-7603607 | Msa0101130:CDS |
| TAACAAACCTGAGAGTAGGA+AGG | 0.606825 | 1_3:+7605329 | None:intergenic |
| TGGAAAAGCACACGATGGAG+TGG | 0.609324 | 1_3:-7603647 | Msa0101130:CDS |
| AGCTCTAACAATAAAAGATG+AGG | 0.610854 | 1_3:-7602626 | Msa0101130:CDS |
| GGAGTGGTTGTTAACACAAG+AGG | 0.610855 | 1_3:-7603631 | Msa0101130:CDS |
| CAAGGAAAACTTGAAAACAA+AGG | 0.617778 | 1_3:-7602674 | Msa0101130:CDS |
| AGATGAGATGAAGGAGGCGA+CGG | 0.624465 | 1_3:-7604012 | Msa0101130:CDS |
| TGACTCTTTGACATCAAGAA+GGG | 0.625792 | 1_3:+7603149 | None:intergenic |
| GATGCTGGTGGAACTAAACC+AGG | 0.625978 | 1_3:-7603022 | Msa0101130:CDS |
| GGAGAAAGATGACCATGTGA+AGG | 0.626967 | 1_3:-7602929 | Msa0101130:CDS |
| TGTTTGGCTGTGGTAAAAGC+AGG | 0.636480 | 1_3:-7602253 | Msa0101130:CDS |
| ATTGACAGAGCAGCTTGTGA+TGG | 0.636680 | 1_3:-7602212 | Msa0101130:CDS |
| CATGGAATTGAAGGAGAAGG+AGG | 0.638231 | 1_3:-7604159 | Msa0101130:CDS |
| AAACGCTAGAGAATTTCAGA+AGG | 0.644568 | 1_3:-7603557 | Msa0101130:CDS |
| CTGCTCGCGAGAAGTATGAG+AGG | 0.645894 | 1_3:-7604040 | Msa0101130:CDS |
| GTTGAGAAAAGCAAAGGACA+TGG | 0.655159 | 1_3:-7602560 | Msa0101130:CDS |
| AAGTGCTAGGAAGATGCTGG+TGG | 0.655984 | 1_3:-7603034 | Msa0101130:CDS |
| AGAAGAACTACGTCTATCCG+TGG | 0.663326 | 1_3:-7603718 | Msa0101130:CDS |
| TACAACGTTCCTCTGTGACG+TGG | 0.671813 | 1_3:+7602145 | None:intergenic |
| GCTTGAAGATGAGATGAAGG+AGG | 0.679304 | 1_3:-7604018 | Msa0101130:CDS |
| GGACAACCGGATGATAGGAG+AGG | 0.688688 | 1_3:-7604225 | Msa0101130:CDS |
| GCTTATGAAGAAGTTACAGG+AGG | 0.689307 | 1_3:-7603274 | Msa0101130:CDS |
| CTCTTTGGAAAAGCACACGA+TGG | 0.698049 | 1_3:-7603652 | Msa0101130:CDS |
| AACGCTAGAGAATTTCAGAA+GGG | 0.699020 | 1_3:-7603556 | Msa0101130:CDS |
| GAATGTGCTTGAGTTGACCA+AGG | 0.746422 | 1_3:-7602692 | Msa0101130:CDS |
| TAAAGGACGCCACGTCACAG+AGG | 0.758128 | 1_3:-7602154 | Msa0101130:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATTCAACTAAAAAAAT+TGG | - | chr1_3:7602525-7602544 | Msa0101130:CDS | 10.0% |
| !!! | TCAATATTTTAAAGCAAAAT+TGG | - | chr1_3:7602845-7602864 | Msa0101130:CDS | 15.0% |
| !! | TCTATATTATGTATAACTTA+TGG | - | chr1_3:7602926-7602945 | Msa0101130:CDS | 15.0% |
| !!! | TTGTATTATTCAACTTATTT+TGG | + | chr1_3:7604597-7604616 | None:intergenic | 15.0% |
| !! | GGTATATAATATAGAAAAAG+AGG | + | chr1_3:7602200-7602219 | None:intergenic | 20.0% |
| !!! | TATTAATACTGTTTCTGTTA+CGG | - | chr1_3:7602331-7602350 | Msa0101130:CDS | 20.0% |
| !! | TTGATTCTGTAAAAAATTGA+AGG | - | chr1_3:7602648-7602667 | Msa0101130:CDS | 20.0% |
| !! | TATGAATGATGAATATTGAT+CGG | - | chr1_3:7603013-7603032 | Msa0101130:CDS | 20.0% |
| !!! | TATAAAAAGTGCTGAATTTA+AGG | - | chr1_3:7604315-7604334 | Msa0101130:CDS | 20.0% |
| !! | TGATATTTGTGATTAAATTG+AGG | + | chr1_3:7605212-7605231 | None:intergenic | 20.0% |
| !! | TTTGTATGTTGTAATCTATT+TGG | - | chr1_3:7605374-7605393 | Msa0101130:exon | 20.0% |
| !!! | AAGAAAAAGTTTTGTTTGAG+AGG | + | chr1_3:7601884-7601903 | None:intergenic | 25.0% |
| !! | CTACTACTATTAAACTTTTG+TGG | - | chr1_3:7601912-7601931 | Msa0101130:three_prime_UTR | 25.0% |
| ! | AAGGAAACAGAAAAAACAAA+AGG | + | chr1_3:7602221-7602240 | None:intergenic | 25.0% |
| ! | CAGAAACAGTATTAATATGA+AGG | + | chr1_3:7602328-7602347 | None:intergenic | 25.0% |
| !! | TCAAAATCAATTTTTGTCAC+GGG | + | chr1_3:7602608-7602627 | None:intergenic | 25.0% |
| !! | GTCAAAATCAATTTTTGTCA+CGG | + | chr1_3:7602609-7602628 | None:intergenic | 25.0% |
| ! | GTAAAAAATTGAAGGTAAAG+TGG | - | chr1_3:7602656-7602675 | Msa0101130:CDS | 25.0% |
| !!! | TACACTTGAACTCATTTTTT+AGG | + | chr1_3:7602704-7602723 | None:intergenic | 25.0% |
| !!! | TGAATTGATTTTGACATGTT+TGG | + | chr1_3:7602781-7602800 | None:intergenic | 25.0% |
| !! | TGTGAATTTATTGTGCTTTT+AGG | - | chr1_3:7602902-7602921 | Msa0101130:CDS | 25.0% |
| !!! | AGACCTAGTTTTAACAATTA+TGG | - | chr1_3:7603194-7603213 | Msa0101130:CDS | 25.0% |
| !!! | AAATTGAGCTTCTAGAATTA+CGG | - | chr1_3:7603735-7603754 | Msa0101130:CDS | 25.0% |
| ! | ATTGATGTCTTCATTCTTAA+TGG | + | chr1_3:7604689-7604708 | None:intergenic | 25.0% |
| ! | ATCAATACCACTAAATGAAT+TGG | - | chr1_3:7604711-7604730 | Msa0101130:intron | 25.0% |
| ! | TCAATACCACTAAATGAATT+GGG | - | chr1_3:7604712-7604731 | Msa0101130:intron | 25.0% |
| ! | AGATGCTAATGATCATAAAA+TGG | - | chr1_3:7604966-7604985 | Msa0101130:intron | 25.0% |
| ! | TTGTAATCTATTTGGCTAAA+AGG | - | chr1_3:7605382-7605401 | Msa0101130:exon | 25.0% |
| !!! | ATCTTATAACCTACTTTTTG+TGG | + | chr1_3:7605422-7605441 | None:intergenic | 25.0% |
| !! | TAAGATATTCACTTTGTTTG+CGG | - | chr1_3:7605436-7605455 | Msa0101130:five_prime_UTR | 25.0% |
| !! | TATTTTGTCATATACACTAG+TGG | + | chr1_3:7605594-7605613 | None:intergenic | 25.0% |
| AAGAGAAAAAAAGATGTCGA+TGG | + | chr1_3:7601991-7602010 | None:intergenic | 30.0% | |
| GCGTACATAAAAAATAACGA+AGG | + | chr1_3:7602240-7602259 | None:intergenic | 30.0% | |
| !! | TGTTACTTCAGTTAGTGTTT+TGG | - | chr1_3:7602578-7602597 | Msa0101130:CDS | 30.0% |
| TTAATGCAAGTTTGATGAGT+AGG | - | chr1_3:7602983-7603002 | Msa0101130:CDS | 30.0% | |
| TAATGCAAGTTTGATGAGTA+GGG | - | chr1_3:7602984-7603003 | Msa0101130:CDS | 30.0% | |
| ATATTGATCGGATCATGATT+TGG | - | chr1_3:7603025-7603044 | Msa0101130:CDS | 30.0% | |
| GAGTCACAACAAAATTGATT+TGG | + | chr1_3:7603112-7603131 | None:intergenic | 30.0% | |
| !! | ATCAATTTTGTTGTGACTCA+AGG | - | chr1_3:7603113-7603132 | Msa0101130:CDS | 30.0% |
| GCTCCATAATTGTTAAAACT+AGG | + | chr1_3:7603200-7603219 | None:intergenic | 30.0% | |
| ! | ATAGTGAGATTGATGGTTTA+CGG | - | chr1_3:7603567-7603586 | Msa0101130:CDS | 30.0% |
| TACAAAATGCAAGTACAAGA+AGG | - | chr1_3:7604031-7604050 | Msa0101130:CDS | 30.0% | |
| ACAAAATGCAAGTACAAGAA+GGG | - | chr1_3:7604032-7604051 | Msa0101130:CDS | 30.0% | |
| AGAACGAAAGAACAAAACTT+AGG | - | chr1_3:7604146-7604165 | Msa0101130:CDS | 30.0% | |
| GAACGAAAGAACAAAACTTA+GGG | - | chr1_3:7604147-7604166 | Msa0101130:CDS | 30.0% | |
| TTTGAATAAAGAACTCGAAC+AGG | - | chr1_3:7604180-7604199 | Msa0101130:CDS | 30.0% | |
| TTGAAGCAACCAATATGTTA+AGG | - | chr1_3:7604545-7604564 | Msa0101130:intron | 30.0% | |
| TGAAGCAACCAATATGTTAA+GGG | - | chr1_3:7604546-7604565 | Msa0101130:intron | 30.0% | |
| ATCTTTCTCCCTTAACATAT+TGG | + | chr1_3:7604557-7604576 | None:intergenic | 30.0% | |
| !! | TATTTTGGATTACCTTCACA+TGG | + | chr1_3:7604582-7604601 | None:intergenic | 30.0% |
| !! | TCAATTAATGATGCCACTTT+CGG | - | chr1_3:7604738-7604757 | Msa0101130:intron | 30.0% |
| !! | AATTGAGTTGGCAACAAAAA+CGG | - | chr1_3:7604776-7604795 | Msa0101130:intron | 30.0% |
| !!! | CTTTGTTTTCAAGTTTTCCT+TGG | + | chr1_3:7604824-7604843 | None:intergenic | 30.0% |
| CAAGGAAAACTTGAAAACAA+AGG | - | chr1_3:7604822-7604841 | Msa0101130:intron | 30.0% | |
| AAACTTGAAAACAAAGGAGA+TGG | - | chr1_3:7604828-7604847 | Msa0101130:intron | 30.0% | |
| ! | AGCTCTAACAATAAAAGATG+AGG | - | chr1_3:7604870-7604889 | Msa0101130:intron | 30.0% |
| TAAAATGACTCTTGCAAGAT+TGG | - | chr1_3:7604897-7604916 | Msa0101130:intron | 30.0% | |
| !! | TATCAATTGCATTGACTGTT+TGG | - | chr1_3:7605227-7605246 | Msa0101130:intron | 30.0% |
| CAAGCTAAAAGACATGTTAA+AGG | - | chr1_3:7605325-7605344 | Msa0101130:intron | 30.0% | |
| GAAAAAAAGATGTCGATGGA+GGG | + | chr1_3:7601987-7602006 | None:intergenic | 35.0% | |
| AGAAAAAAAGATGTCGATGG+AGG | + | chr1_3:7601988-7602007 | None:intergenic | 35.0% | |
| GTGCAAAATGCATTTACAGA+AGG | + | chr1_3:7602092-7602111 | None:intergenic | 35.0% | |
| AGTCATAGCAATAGCGAATA+AGG | + | chr1_3:7602114-7602133 | None:intergenic | 35.0% | |
| !! | GGTAAAGTGGTGTTTTTGTT+TGG | - | chr1_3:7602669-7602688 | Msa0101130:CDS | 35.0% |
| AATTGGTGAATTGTGAGATG+TGG | - | chr1_3:7602862-7602881 | Msa0101130:CDS | 35.0% | |
| !! | AGATCTTCGTGATTTTGAGT+CGG | - | chr1_3:7603298-7603317 | Msa0101130:CDS | 35.0% |
| !! | AGAACTGTTTTGTTGGAGAA+TGG | - | chr1_3:7603380-7603399 | Msa0101130:CDS | 35.0% |
| ! | CAGCTTTAATTTCACTCTCT+TGG | + | chr1_3:7603439-7603458 | None:intergenic | 35.0% |
| ! | TAGTGAGATTGATGGTTTAC+GGG | - | chr1_3:7603568-7603587 | Msa0101130:CDS | 35.0% |
| GAGATGGAGAAAATGAAGAT+TGG | - | chr1_3:7603614-7603633 | Msa0101130:CDS | 35.0% | |
| ! | GGAGAAAATGAAGATTGGTT+TGG | - | chr1_3:7603619-7603638 | Msa0101130:CDS | 35.0% |
| TGATTCTGAGCTTAGACAAA+AGG | - | chr1_3:7603670-7603689 | Msa0101130:CDS | 35.0% | |
| TGTTGAAGGAGAAAAACTCA+AGG | - | chr1_3:7603811-7603830 | Msa0101130:CDS | 35.0% | |
| AAACGCTAGAGAATTTCAGA+AGG | - | chr1_3:7603939-7603958 | Msa0101130:CDS | 35.0% | |
| AACGCTAGAGAATTTCAGAA+GGG | - | chr1_3:7603940-7603959 | Msa0101130:CDS | 35.0% | |
| TTCGTTCTCCACTTCTATTT+GGG | + | chr1_3:7604134-7604153 | None:intergenic | 35.0% | |
| TTTCGTTCTCCACTTCTATT+TGG | + | chr1_3:7604135-7604154 | None:intergenic | 35.0% | |
| GAAGAAAGAAAGAGCTTCTT+TGG | - | chr1_3:7604249-7604268 | Msa0101130:CDS | 35.0% | |
| TGACTCTTTGACATCAAGAA+GGG | + | chr1_3:7604350-7604369 | None:intergenic | 35.0% | |
| ! | CCTTTTCAGTTTTCAATTCC+TGG | + | chr1_3:7604399-7604418 | None:intergenic | 35.0% |
| CCAGGAATTGAAAACTGAAA+AGG | - | chr1_3:7604396-7604415 | Msa0101130:CDS | 35.0% | |
| TCTTAAGATCAGAGATTTCC+TGG | + | chr1_3:7604495-7604514 | None:intergenic | 35.0% | |
| GTTGAATAATACAAGCCTGA+AGG | - | chr1_3:7604603-7604622 | Msa0101130:intron | 35.0% | |
| TGATCACCCAATTCATTTAG+TGG | + | chr1_3:7604721-7604740 | None:intergenic | 35.0% | |
| ! | GAGTCAACAACTTTTGAACA+AGG | - | chr1_3:7605125-7605144 | Msa0101130:intron | 35.0% |
| CAAGGTTAACCACAAAAAGT+AGG | - | chr1_3:7605410-7605429 | Msa0101130:five_prime_UTR | 35.0% | |
| TATCTGTCATGTATTTGTGC+AGG | - | chr1_3:7605477-7605496 | Msa0101130:five_prime_UTR | 35.0% | |
| TGTCATATACACTAGTGGAA+TGG | + | chr1_3:7605589-7605608 | None:intergenic | 35.0% | |
| ! | TTTTCTGCATTCAACTACTC+TGG | - | chr1_3:7605637-7605656 | Msa0101130:five_prime_UTR | 35.0% |
| GAAGAAGAATTCTCAGGTGA+CGG | + | chr1_3:7601859-7601878 | None:intergenic | 40.0% | |
| GAGGTAGAAGAAGAATTCTC+AGG | + | chr1_3:7601865-7601884 | None:intergenic | 40.0% | |
| TAACAAACCTGAGAGTAGGA+AGG | + | chr1_3:7602170-7602189 | None:intergenic | 40.0% | |
| GAAGTAACAAACCTGAGAGT+AGG | + | chr1_3:7602174-7602193 | None:intergenic | 40.0% | |
| ! | CTGTTACGGACTGTGATTTA+CGG | - | chr1_3:7602345-7602364 | Msa0101130:CDS | 40.0% |
| GTGAATTGTGAGATGTGGAA+TGG | - | chr1_3:7602867-7602886 | Msa0101130:CDS | 40.0% | |
| ! | GATCGGATCATGATTTGGAA+TGG | - | chr1_3:7603030-7603049 | Msa0101130:CDS | 40.0% |
| TGTGCTCTCTTAGGTACAAT+AGG | - | chr1_3:7603075-7603094 | Msa0101130:CDS | 40.0% | |
| GTTGTGACTCAAGGAAGAAA+AGG | - | chr1_3:7603122-7603141 | Msa0101130:CDS | 40.0% | |
| ! | GAAGAAAAGGTCGTTGGTTA+AGG | - | chr1_3:7603135-7603154 | Msa0101130:CDS | 40.0% |
| ! | AAAGGTCGTTGGTTAAGGAA+TGG | - | chr1_3:7603140-7603159 | Msa0101130:CDS | 40.0% |
| GTTTGAGCAGACACAAAAGT+TGG | - | chr1_3:7603250-7603269 | Msa0101130:CDS | 40.0% | |
| AGACACAAAAGTTGGACAAC+CGG | - | chr1_3:7603258-7603277 | Msa0101130:CDS | 40.0% | |
| GACTCAAAATCACGAAGATC+TGG | + | chr1_3:7603299-7603318 | None:intergenic | 40.0% | |
| ! | AGTGGAGAGAACTGTTTTGT+TGG | - | chr1_3:7603373-7603392 | Msa0101130:CDS | 40.0% |
| AGATAGAGGAAATGAAGCTC+CGG | - | chr1_3:7603531-7603550 | Msa0101130:CDS | 40.0% | |
| ! | GATCGTGATAGTGAGATTGA+TGG | - | chr1_3:7603560-7603579 | Msa0101130:CDS | 40.0% |
| ! | GTCTTTGAAGGAAGAAGAGA+TGG | - | chr1_3:7603598-7603617 | Msa0101130:CDS | 40.0% |
| AGAAAAACTCAAGGTTGCAG+AGG | - | chr1_3:7603820-7603839 | Msa0101130:CDS | 40.0% | |
| ACAACATGACACTTTCCCTT+TGG | + | chr1_3:7604090-7604109 | None:intergenic | 40.0% | |
| !! | GGAAAGTGTCATGTTGTACA+TGG | - | chr1_3:7604093-7604112 | Msa0101130:CDS | 40.0% |
| GAAAGATGCCCAAATAGAAG+TGG | - | chr1_3:7604123-7604142 | Msa0101130:CDS | 40.0% | |
| CTTCATAAGCTCCTTCTCTA+CGG | + | chr1_3:7604212-7604231 | None:intergenic | 40.0% | |
| GGAGCTTATGAAGAAGTTAC+AGG | - | chr1_3:7604219-7604238 | Msa0101130:CDS | 40.0% | |
| GCTTATGAAGAAGTTACAGG+AGG | - | chr1_3:7604222-7604241 | Msa0101130:CDS | 40.0% | |
| CTGACTCTTTGACATCAAGA+AGG | + | chr1_3:7604351-7604370 | None:intergenic | 40.0% | |
| TGATGCTAAGCTACAAATCC+AGG | - | chr1_3:7604378-7604397 | Msa0101130:CDS | 40.0% | |
| ! | ACTTGGAACTTTCAAGTGCT+AGG | - | chr1_3:7604449-7604468 | Msa0101130:intron | 40.0% |
| AACTCGTTCAACCACAGTTT+CGG | + | chr1_3:7604638-7604657 | None:intergenic | 40.0% | |
| !! | ATTAATGATGCCACTTTCGG+AGG | - | chr1_3:7604741-7604760 | Msa0101130:intron | 40.0% |
| ACCCTACTAGTGAATTGAGT+TGG | - | chr1_3:7604764-7604783 | Msa0101130:intron | 40.0% | |
| GCCAACTCAATTCACTAGTA+GGG | + | chr1_3:7604768-7604787 | None:intergenic | 40.0% | |
| TGCCAACTCAATTCACTAGT+AGG | + | chr1_3:7604769-7604788 | None:intergenic | 40.0% | |
| TGCAAGATTGGATGCAAAAG+AGG | - | chr1_3:7604909-7604928 | Msa0101130:intron | 40.0% | |
| GGAAGAGTTGAGAAAAGCAA+AGG | - | chr1_3:7604930-7604949 | Msa0101130:intron | 40.0% | |
| GTTGAGAAAAGCAAAGGACA+TGG | - | chr1_3:7604936-7604955 | Msa0101130:intron | 40.0% | |
| CGAGAAAACTATGGATGACT+TGG | - | chr1_3:7605017-7605036 | Msa0101130:intron | 40.0% | |
| AATTGAGAAGCTTCAGCTTG+AGG | - | chr1_3:7605041-7605060 | Msa0101130:intron | 40.0% | |
| !! | TTTGGCTAAAAGGCATTGCA+AGG | - | chr1_3:7605392-7605411 | Msa0101130:five_prime_UTR | 40.0% |
| ATGGAGGGAGGGAAAAGTTA+TGG | + | chr1_3:7601972-7601991 | None:intergenic | 45.0% | |
| AAAAGATGTCGATGGAGGGA+GGG | + | chr1_3:7601983-7602002 | None:intergenic | 45.0% | |
| AAAAAGATGTCGATGGAGGG+AGG | + | chr1_3:7601984-7602003 | None:intergenic | 45.0% | |
| AAACAATAGCACGCTAGCGT+TGG | + | chr1_3:7602053-7602072 | None:intergenic | 45.0% | |
| TTCCACATCTCACTGTTCGA+AGG | - | chr1_3:7602805-7602824 | Msa0101130:CDS | 45.0% | |
| TCCACATCTCACTGTTCGAA+GGG | - | chr1_3:7602806-7602825 | Msa0101130:CDS | 45.0% | |
| GCAAGTTTGATGAGTAGGGT+TGG | - | chr1_3:7602988-7603007 | Msa0101130:CDS | 45.0% | |
| TGCAGTTGTTGTGCTCTCTT+AGG | - | chr1_3:7603066-7603085 | Msa0101130:CDS | 45.0% | |
| CTCAAGGAAGAAAAGGTCGT+TGG | - | chr1_3:7603129-7603148 | Msa0101130:CDS | 45.0% | |
| AAGTTGGACAACCGGATGAT+AGG | - | chr1_3:7603266-7603285 | Msa0101130:CDS | 45.0% | |
| GCTCATGGAATTGAAGGAGA+AGG | - | chr1_3:7603334-7603353 | Msa0101130:CDS | 45.0% | |
| CATGGAATTGAAGGAGAAGG+AGG | - | chr1_3:7603337-7603356 | Msa0101130:CDS | 45.0% | |
| GGAGAAGGAGGATCATTTAC+AGG | - | chr1_3:7603349-7603368 | Msa0101130:CDS | 45.0% | |
| GGAGGATCATTTACAGGAAG+TGG | - | chr1_3:7603355-7603374 | Msa0101130:CDS | 45.0% | |
| GTTGGAGAATGGAAAGCTGA+AGG | - | chr1_3:7603391-7603410 | Msa0101130:CDS | 45.0% | |
| AAAGCTGAAGGATGCGAAAG+AGG | - | chr1_3:7603403-7603422 | Msa0101130:CDS | 45.0% | |
| GAGGCTTGAAGATGAGATGA+AGG | - | chr1_3:7603475-7603494 | Msa0101130:CDS | 45.0% | |
| GCTTGAAGATGAGATGAAGG+AGG | - | chr1_3:7603478-7603497 | Msa0101130:CDS | 45.0% | |
| ! | GCTAGTTTGGTTTCTCAAGC+TGG | - | chr1_3:7603506-7603525 | Msa0101130:CDS | 45.0% |
| TTCTCAAGCTGGACAGATAG+AGG | - | chr1_3:7603517-7603536 | Msa0101130:CDS | 45.0% | |
| AGAAGAACTACGTCTATCCG+TGG | - | chr1_3:7603778-7603797 | Msa0101130:CDS | 45.0% | |
| ! | CATCGTGTGCTTTTCCAAAG+AGG | + | chr1_3:7603846-7603865 | None:intergenic | 45.0% |
| ! | CTCTTTGGAAAAGCACACGA+TGG | - | chr1_3:7603844-7603863 | Msa0101130:CDS | 45.0% |
| GGAGTGGTTGTTAACACAAG+AGG | - | chr1_3:7603865-7603884 | Msa0101130:CDS | 45.0% | |
| ACAAGAGGAACTCAAGAGAC+TGG | - | chr1_3:7603880-7603899 | Msa0101130:CDS | 45.0% | |
| AGAAGCTTCTCAGTGATGTC+AGG | - | chr1_3:7603966-7603985 | Msa0101130:CDS | 45.0% | |
| AGCAATCGCTTGCATCTTCT+AGG | - | chr1_3:7604008-7604027 | Msa0101130:CDS | 45.0% | |
| GCAAGTACAAGAAGGGTTGT+TGG | - | chr1_3:7604039-7604058 | Msa0101130:CDS | 45.0% | |
| ACAGGATTTGTCCGTAGAGA+AGG | - | chr1_3:7604198-7604217 | Msa0101130:CDS | 45.0% | |
| !! | AGAAAGAGCTTCTTTGGAGC+AGG | - | chr1_3:7604255-7604274 | Msa0101130:CDS | 45.0% |
| CTTGAAGCGAAGCCATTTCT+TGG | + | chr1_3:7604285-7604304 | None:intergenic | 45.0% | |
| AGAAATGGCTTCGCTTCAAG+AGG | - | chr1_3:7604285-7604304 | Msa0101130:CDS | 45.0% | |
| TTCTCTTCAGTCTCTCTTGG+AGG | - | chr1_3:7604420-7604439 | Msa0101130:CDS | 45.0% | |
| TCTCTTGGAGGAGAAAGACT+TGG | - | chr1_3:7604432-7604451 | Msa0101130:intron | 45.0% | |
| TTCAAGTGCTAGGAAGATGC+TGG | - | chr1_3:7604459-7604478 | Msa0101130:intron | 45.0% | |
| GGAGAAAGATGACCATGTGA+AGG | - | chr1_3:7604567-7604586 | Msa0101130:intron | 45.0% | |
| !! | GAATGTGCTTGAGTTGACCA+AGG | - | chr1_3:7604804-7604823 | Msa0101130:intron | 45.0% |
| AATGGTGTATGCTATGACGC+AGG | - | chr1_3:7604984-7605003 | Msa0101130:intron | 45.0% | |
| GAGAATCGGCGAGAAAACTA+TGG | - | chr1_3:7605008-7605027 | Msa0101130:intron | 45.0% | |
| TAGCTATCAGCTTCAACGCT+CGG | + | chr1_3:7605156-7605175 | None:intergenic | 45.0% | |
| !! | TTGCATTGACTGTTTGGCTG+TGG | - | chr1_3:7605233-7605252 | Msa0101130:intron | 45.0% |
| TGTTTGGCTGTGGTAAAAGC+AGG | - | chr1_3:7605243-7605262 | Msa0101130:intron | 45.0% | |
| ATTGACAGAGCAGCTTGTGA+TGG | - | chr1_3:7605284-7605303 | Msa0101130:intron | 45.0% | |
| CTGTCATGTATTTGTGCAGG+TGG | - | chr1_3:7605480-7605499 | Msa0101130:five_prime_UTR | 45.0% | |
| AGCAGCAGAAGTCATTGCTT+TGG | + | chr1_3:7605670-7605689 | None:intergenic | 45.0% | |
| ! | GAATTCTCAGGTGACGGTCT+TGG | + | chr1_3:7601853-7601872 | None:intergenic | 50.0% |
| ! | CGCTAGCGTGCTATTGTTTC+TGG | - | chr1_3:7602054-7602073 | Msa0101130:three_prime_UTR | 50.0% |
| GAGTAGGAAGGAGAAGAGGT+AGG | + | chr1_3:7602158-7602177 | None:intergenic | 50.0% | |
| CTGAGAGTAGGAAGGAGAAG+AGG | + | chr1_3:7602162-7602181 | None:intergenic | 50.0% | |
| CTCTTCTCCTTCCTACTCTC+AGG | - | chr1_3:7602160-7602179 | Msa0101130:three_prime_UTR | 50.0% | |
| TCCCTTCGAACAGTGAGATG+TGG | + | chr1_3:7602810-7602829 | None:intergenic | 50.0% | |
| TCGAGAAGCCTAGCAGATTC+TGG | + | chr1_3:7603224-7603243 | None:intergenic | 50.0% | |
| CTGGTTCCTCTCCTATCATC+CGG | + | chr1_3:7603280-7603299 | None:intergenic | 50.0% | |
| ! | GGATCTTTTGTCTGCGCTCA+TGG | - | chr1_3:7603319-7603338 | Msa0101130:CDS | 50.0% |
| GTCTGCGCTCATGGAATTGA+AGG | - | chr1_3:7603328-7603347 | Msa0101130:CDS | 50.0% | |
| AGATGAGATGAAGGAGGCGA+CGG | - | chr1_3:7603484-7603503 | Msa0101130:CDS | 50.0% | |
| AGGAAATGAAGCTCCGGCTT+AGG | - | chr1_3:7603537-7603556 | Msa0101130:CDS | 50.0% | |
| GGAAATGAAGCTCCGGCTTA+GGG | - | chr1_3:7603538-7603557 | Msa0101130:CDS | 50.0% | |
| CACTATCACGATCCCTAAGC+CGG | + | chr1_3:7603553-7603572 | None:intergenic | 50.0% | |
| ! | TGGAAAAGCACACGATGGAG+TGG | - | chr1_3:7603849-7603868 | Msa0101130:CDS | 50.0% |
| GGAACTCAAGAGACTGGAAG+AGG | - | chr1_3:7603886-7603905 | Msa0101130:CDS | 50.0% | |
| ACTCAAGAGACTGGAAGAGG+AGG | - | chr1_3:7603889-7603908 | Msa0101130:CDS | 50.0% | |
| TGGCTGAACTTGCAGACCAA+AGG | - | chr1_3:7604071-7604090 | Msa0101130:CDS | 50.0% | |
| GGCTGAACTTGCAGACCAAA+GGG | - | chr1_3:7604072-7604091 | Msa0101130:CDS | 50.0% | |
| GGCTTCTCTTCAGTCTCTCT+TGG | - | chr1_3:7604417-7604436 | Msa0101130:CDS | 50.0% | |
| AAGTGCTAGGAAGATGCTGG+TGG | - | chr1_3:7604462-7604481 | Msa0101130:intron | 50.0% | |
| GATGCTGGTGGAACTAAACC+AGG | - | chr1_3:7604474-7604493 | Msa0101130:intron | 50.0% | |
| TACAAGCCTGAAGGCTTTCG+AGG | - | chr1_3:7604612-7604631 | Msa0101130:intron | 50.0% | |
| GAGTTGGCAACAAAAACGGC+TGG | - | chr1_3:7604780-7604799 | Msa0101130:intron | 50.0% | |
| GCTATGACGCAGGAGAGAAT+CGG | - | chr1_3:7604994-7605013 | Msa0101130:intron | 50.0% | |
| TACAACGTTCCTCTGTGACG+TGG | + | chr1_3:7605354-7605373 | None:intergenic | 50.0% | |
| ! | ATGGAGCGCCAGAATCTGCT+AGG | - | chr1_3:7603213-7603232 | Msa0101130:CDS | 55.0% |
| GGACAACCGGATGATAGGAG+AGG | - | chr1_3:7603271-7603290 | Msa0101130:CDS | 55.0% | |
| ! | CTGCTCGCGAGAAGTATGAG+AGG | - | chr1_3:7603456-7603475 | Msa0101130:CDS | 55.0% |
| ACGGGATGCGCTGTCTTTGA+AGG | - | chr1_3:7603586-7603605 | Msa0101130:CDS | 55.0% | |
| TTCAACATCCCTCGCAGCCA+CGG | + | chr1_3:7603798-7603817 | None:intergenic | 55.0% | |
| CAAGGTTGCAGAGGCCTCTT+TGG | - | chr1_3:7603829-7603848 | Msa0101130:CDS | 55.0% | |
| GACTGGAAGAGGAGGCTTCA+AGG | - | chr1_3:7603897-7603916 | Msa0101130:CDS | 55.0% | |
| AGGGTTGTTGGAACAGCAGC+TGG | - | chr1_3:7604051-7604070 | Msa0101130:CDS | 55.0% | |
| GGAGCAGGCTGTCCAAGAAA+TGG | - | chr1_3:7604270-7604289 | Msa0101130:CDS | 55.0% | |
| TTTCGGCCTCGAAAGCCTTC+AGG | + | chr1_3:7604621-7604640 | None:intergenic | 55.0% | |
| CTAGTAGGGTCCTCCGAAAG+TGG | + | chr1_3:7604754-7604773 | None:intergenic | 55.0% | |
| ATCAGCTTCAACGCTCGGCA+TGG | + | chr1_3:7605151-7605170 | None:intergenic | 55.0% | |
| AGCAGGAGTTGCTCGACTCT+CGG | - | chr1_3:7605260-7605279 | Msa0101130:intron | 55.0% | |
| !! | GAGCAGCTTGTGATGGATGC+AGG | - | chr1_3:7605291-7605310 | Msa0101130:intron | 55.0% |
| TAAAGGACGCCACGTCACAG+AGG | - | chr1_3:7605342-7605361 | Msa0101130:CDS | 55.0% | |
| ! | GAAGGAGGCGACGGCTAGTT+TGG | - | chr1_3:7603493-7603512 | Msa0101130:CDS | 60.0% |
| TACGTCTATCCGTGGCTGCG+AGG | - | chr1_3:7603786-7603805 | Msa0101130:CDS | 60.0% | |
| ACGTCTATCCGTGGCTGCGA+GGG | - | chr1_3:7603787-7603806 | Msa0101130:CDS | 60.0% | |
| GTGGCTGCGAGGGATGTTGA+AGG | - | chr1_3:7603797-7603816 | Msa0101130:CDS | 60.0% | |
| GGAGGCTTCAAGGCATGCAC+AGG | - | chr1_3:7603907-7603926 | Msa0101130:CDS | 60.0% | |
| GGCTTTCGAGGCCGAAACTG+TGG | - | chr1_3:7604624-7604643 | Msa0101130:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 7601828 | 7605690 | 7601828 | ID=Msa0101130;Name=Msa0101130 |
| chr1_3 | mRNA | 7601828 | 7605690 | 7601828 | ID=Msa0101130-mRNA-1;Parent=Msa0101130;Name=Msa0101130-mRNA-1;_AED=0.00;_eAED=0.00;_QI=300|1|1|1|1|1|2|358|771 |
| chr1_3 | exon | 7601828 | 7604447 | 7601828 | ID=Msa0101130-mRNA-1:exon:3025;Parent=Msa0101130-mRNA-1 |
| chr1_3 | exon | 7605337 | 7605690 | 7605337 | ID=Msa0101130-mRNA-1:exon:3024;Parent=Msa0101130-mRNA-1 |
| chr1_3 | five_prime_UTR | 7605391 | 7605690 | 7605391 | ID=Msa0101130-mRNA-1:five_prime_utr;Parent=Msa0101130-mRNA-1 |
| chr1_3 | CDS | 7605337 | 7605390 | 7605337 | ID=Msa0101130-mRNA-1:cds;Parent=Msa0101130-mRNA-1 |
| chr1_3 | CDS | 7602186 | 7604447 | 7602186 | ID=Msa0101130-mRNA-1:cds;Parent=Msa0101130-mRNA-1 |
| chr1_3 | three_prime_UTR | 7601828 | 7602185 | 7601828 | ID=Msa0101130-mRNA-1:three_prime_utr;Parent=Msa0101130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
