Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0003290 | XP_003589339.1 | 97.849 | 744 | 16 | 0 | 1 | 744 | 1 | 744 | 0.0 | 1529 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0003290 | sp|Q9MAJ7|BGAL5_ARATH | 72.865 | 726 | 194 | 3 | 6 | 729 | 8 | 732 | 0.0 | 1138 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0003290 | G7I5V0 | 97.849 | 744 | 16 | 0 | 1 | 744 | 1 | 744 | 0.0 | 1529 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003290 | Msa0050740 | 0.874311 | 7.456345e-68 | -8.615850e-47 |
| Msa0003290 | Msa0050750 | 0.871027 | 9.344457e-67 | -8.615850e-47 |
| Msa0003290 | Msa0621730 | 0.817774 | 2.769228e-52 | -8.615850e-47 |
| Msa0003290 | Msa0748290 | 0.800032 | 1.742965e-48 | -8.615850e-47 |
| Msa0003290 | Msa1440590 | 0.872675 | 2.649996e-67 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0003290 | MtrunA17_Chr1g0155701 | 97.849 | 744 | 16 | 0 | 1 | 744 | 1 | 744 | 0.0 | 1529 |
| Msa0003290 | MtrunA17_Chr3g0142001 | 79.536 | 733 | 143 | 4 | 1 | 730 | 1 | 729 | 0.0 | 1229 |
| Msa0003290 | MtrunA17_Chr8g0372421 | 72.702 | 729 | 197 | 2 | 1 | 728 | 1 | 728 | 0.0 | 1142 |
| Msa0003290 | MtrunA17_Chr5g0404841 | 72.230 | 731 | 198 | 3 | 1 | 730 | 1 | 727 | 0.0 | 1124 |
| Msa0003290 | MtrunA17_Chr8g0342001 | 65.287 | 749 | 243 | 9 | 8 | 745 | 4 | 746 | 0.0 | 1002 |
| Msa0003290 | MtrunA17_Chr2g0330291 | 65.014 | 726 | 243 | 7 | 28 | 745 | 27 | 749 | 0.0 | 973 |
| Msa0003290 | MtrunA17_Chr2g0299161 | 62.775 | 728 | 264 | 5 | 1 | 726 | 3 | 725 | 0.0 | 972 |
| Msa0003290 | MtrunA17_Chr1g0152571 | 63.121 | 705 | 255 | 5 | 25 | 726 | 27 | 729 | 0.0 | 954 |
| Msa0003290 | MtrunA17_Chr2g0326481 | 55.313 | 734 | 299 | 9 | 9 | 730 | 7 | 723 | 0.0 | 830 |
| Msa0003290 | MtrunA17_Chr4g0029301 | 55.299 | 736 | 301 | 11 | 9 | 730 | 8 | 729 | 0.0 | 808 |
| Msa0003290 | MtrunA17_Chr3g0130711 | 51.429 | 735 | 339 | 8 | 13 | 735 | 14 | 742 | 0.0 | 770 |
| Msa0003290 | MtrunA17_Chr8g0378221 | 50.750 | 733 | 317 | 10 | 28 | 723 | 49 | 774 | 0.0 | 733 |
| Msa0003290 | MtrunA17_Chr2g0301001 | 47.091 | 739 | 371 | 9 | 6 | 728 | 2 | 736 | 0.0 | 695 |
| Msa0003290 | MtrunA17_Chr3g0124931 | 49.304 | 718 | 322 | 12 | 11 | 723 | 7 | 687 | 0.0 | 676 |
| Msa0003290 | MtrunA17_Chr5g0406921 | 48.091 | 707 | 349 | 9 | 29 | 723 | 28 | 728 | 0.0 | 675 |
| Msa0003290 | MtrunA17_Chr5g0408371 | 47.486 | 716 | 351 | 12 | 29 | 730 | 28 | 732 | 0.0 | 669 |
| Msa0003290 | MtrunA17_Chr3g0130721 | 48.429 | 700 | 328 | 9 | 29 | 723 | 27 | 698 | 0.0 | 664 |
| Msa0003290 | MtrunA17_Chr3g0077531 | 46.006 | 726 | 370 | 11 | 3 | 715 | 2 | 718 | 0.0 | 657 |
| Msa0003290 | MtrunA17_Chr4g0037031 | 44.918 | 728 | 361 | 11 | 10 | 724 | 11 | 711 | 0.0 | 642 |
| Msa0003290 | MtrunA17_Chr3g0145581 | 45.312 | 704 | 348 | 12 | 28 | 724 | 34 | 707 | 0.0 | 637 |
| Msa0003290 | MtrunA17_Chr2g0326491 | 55.534 | 524 | 160 | 6 | 9 | 474 | 8 | 516 | 0.0 | 593 |
| Msa0003290 | MtrunA17_Chr2g0326441 | 67.483 | 286 | 88 | 1 | 9 | 294 | 7 | 287 | 7.68e-144 | 424 |
| Msa0003290 | MtrunA17_Chr2g0326451 | 44.028 | 427 | 201 | 7 | 325 | 730 | 25 | 434 | 2.55e-113 | 353 |
| Msa0003290 | MtrunA17_Chr4g0071281 | 50.725 | 207 | 99 | 3 | 513 | 718 | 39 | 243 | 7.98e-61 | 205 |
| Msa0003290 | MtrunA17_Chr2g0326521 | 43.379 | 219 | 92 | 5 | 515 | 728 | 4 | 195 | 9.44e-47 | 168 |
| Msa0003290 | MtrunA17_Chr4g0071291 | 57.447 | 141 | 28 | 1 | 24 | 164 | 17 | 125 | 3.68e-44 | 155 |
| Msa0003290 | MtrunA17_Chr8g0372581 | 53.147 | 143 | 48 | 2 | 147 | 289 | 6 | 129 | 7.26e-43 | 152 |
| Msa0003290 | MtrunA17_Chr5g0405781 | 35.231 | 281 | 97 | 7 | 80 | 359 | 10 | 206 | 2.51e-39 | 149 |
| Msa0003290 | MtrunA17_Chr2g0330191 | 33.148 | 359 | 186 | 11 | 39 | 361 | 64 | 404 | 1.99e-36 | 146 |
| Msa0003290 | MtrunA17_Chr2g0307981 | 29.968 | 317 | 185 | 10 | 405 | 715 | 6 | 291 | 7.99e-32 | 126 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0003290 | AT1G45130.1 | 72.865 | 726 | 194 | 3 | 6 | 729 | 8 | 732 | 0.0 | 1138 |
| Msa0003290 | AT4G36360.2 | 70.248 | 726 | 215 | 1 | 4 | 728 | 8 | 733 | 0.0 | 1115 |
| Msa0003290 | AT4G36360.1 | 70.248 | 726 | 215 | 1 | 4 | 728 | 8 | 733 | 0.0 | 1114 |
| Msa0003290 | AT1G45130.2 | 72.656 | 640 | 174 | 1 | 91 | 729 | 14 | 653 | 0.0 | 1006 |
| Msa0003290 | AT3G13750.1 | 64.932 | 730 | 243 | 7 | 5 | 730 | 16 | 736 | 0.0 | 988 |
| Msa0003290 | AT4G26140.1 | 62.829 | 721 | 258 | 7 | 9 | 726 | 12 | 725 | 0.0 | 963 |
| Msa0003290 | AT3G52840.2 | 63.047 | 709 | 255 | 5 | 22 | 726 | 73 | 778 | 0.0 | 957 |
| Msa0003290 | AT3G52840.1 | 63.047 | 709 | 255 | 5 | 22 | 726 | 19 | 724 | 0.0 | 956 |
| Msa0003290 | AT4G26140.7 | 60.858 | 746 | 257 | 8 | 9 | 726 | 12 | 750 | 0.0 | 949 |
| Msa0003290 | AT5G56870.1 | 60.935 | 727 | 279 | 5 | 1 | 726 | 1 | 723 | 0.0 | 927 |
| Msa0003290 | AT4G26140.9 | 60.028 | 713 | 250 | 8 | 9 | 693 | 12 | 717 | 0.0 | 895 |
| Msa0003290 | AT2G28470.1 | 57.163 | 712 | 285 | 8 | 28 | 726 | 31 | 735 | 0.0 | 837 |
| Msa0003290 | AT2G28470.3 | 57.163 | 712 | 285 | 8 | 28 | 726 | 31 | 735 | 0.0 | 837 |
| Msa0003290 | AT2G28470.2 | 57.163 | 712 | 285 | 8 | 28 | 726 | 25 | 729 | 0.0 | 837 |
| Msa0003290 | AT2G28470.4 | 57.163 | 712 | 285 | 8 | 28 | 726 | 25 | 729 | 0.0 | 837 |
| Msa0003290 | AT4G26140.3 | 62.460 | 618 | 225 | 5 | 9 | 626 | 12 | 622 | 0.0 | 822 |
| Msa0003290 | AT4G26140.2 | 62.460 | 618 | 225 | 5 | 9 | 626 | 12 | 622 | 0.0 | 822 |
| Msa0003290 | AT4G26140.6 | 62.419 | 620 | 224 | 6 | 9 | 626 | 12 | 624 | 0.0 | 820 |
| Msa0003290 | AT2G28470.5 | 57.080 | 678 | 271 | 8 | 27 | 691 | 30 | 700 | 0.0 | 789 |
| Msa0003290 | AT5G63810.1 | 49.729 | 738 | 358 | 6 | 1 | 728 | 4 | 738 | 0.0 | 768 |
| Msa0003290 | AT2G32810.1 | 50.267 | 748 | 335 | 10 | 6 | 723 | 15 | 755 | 0.0 | 757 |
| Msa0003290 | AT2G32810.2 | 50.267 | 748 | 335 | 10 | 6 | 723 | 15 | 755 | 0.0 | 757 |
| Msa0003290 | AT4G26140.8 | 64.493 | 552 | 188 | 5 | 9 | 558 | 12 | 557 | 0.0 | 747 |
| Msa0003290 | AT4G26140.4 | 61.872 | 577 | 187 | 6 | 9 | 558 | 12 | 582 | 0.0 | 734 |
| Msa0003290 | AT4G26140.5 | 61.872 | 577 | 187 | 6 | 9 | 558 | 12 | 582 | 0.0 | 734 |
| Msa0003290 | AT5G20710.1 | 48.378 | 740 | 367 | 9 | 1 | 730 | 1 | 735 | 0.0 | 712 |
| Msa0003290 | AT1G77410.1 | 48.133 | 723 | 329 | 16 | 9 | 723 | 8 | 692 | 0.0 | 659 |
| Msa0003290 | AT5G63800.1 | 47.340 | 733 | 334 | 14 | 6 | 723 | 7 | 702 | 0.0 | 656 |
| Msa0003290 | AT1G77410.3 | 47.802 | 728 | 329 | 17 | 9 | 723 | 8 | 697 | 0.0 | 653 |
| Msa0003290 | AT1G31740.1 | 45.934 | 701 | 323 | 9 | 29 | 718 | 22 | 677 | 0.0 | 645 |
| Msa0003290 | AT2G16730.1 | 45.481 | 697 | 338 | 10 | 28 | 713 | 43 | 708 | 0.0 | 623 |
| Msa0003290 | AT4G35010.1 | 44.877 | 693 | 348 | 10 | 28 | 713 | 40 | 705 | 0.0 | 608 |
| Msa0003290 | AT4G38590.1 | 43.778 | 667 | 338 | 12 | 59 | 716 | 1 | 639 | 0.0 | 552 |
| Msa0003290 | AT4G38590.2 | 43.070 | 671 | 341 | 13 | 55 | 716 | 65 | 703 | 1.79e-178 | 539 |
| Msa0003290 | AT1G77410.2 | 46.932 | 603 | 277 | 15 | 129 | 723 | 19 | 586 | 6.05e-175 | 518 |
| Msa0003290 | AT1G77410.4 | 46.932 | 603 | 277 | 15 | 129 | 723 | 19 | 586 | 6.05e-175 | 518 |
| Msa0003290 | AT5G20710.2 | 43.633 | 534 | 287 | 8 | 207 | 730 | 1 | 530 | 1.61e-153 | 460 |
| Msa0003290 | AT2G04060.1 | 32.880 | 368 | 171 | 8 | 294 | 660 | 23 | 315 | 1.36e-52 | 189 |
| Msa0003290 | AT1G72990.3 | 34.943 | 352 | 190 | 10 | 39 | 360 | 18 | 360 | 2.35e-44 | 170 |
| Msa0003290 | AT1G72990.1 | 34.943 | 352 | 190 | 10 | 39 | 360 | 73 | 415 | 3.31e-44 | 170 |
| Msa0003290 | AT1G72990.4 | 34.943 | 352 | 190 | 10 | 39 | 360 | 73 | 415 | 3.31e-44 | 170 |
| Msa0003290 | AT1G72990.2 | 33.724 | 341 | 187 | 10 | 50 | 360 | 22 | 353 | 7.40e-39 | 153 |
| Msa0003290 | AT2G04062.1 | 40.698 | 172 | 81 | 2 | 29 | 200 | 7 | 157 | 3.49e-34 | 128 |
Find 193 sgRNAs with CRISPR-Local
Find 316 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTACTTGTGAAAGAATTAT+TGG | 0.133829 | 1_1:+5790195 | None:intergenic |
| TTCTTCTCTATCTTCTTTCT+TGG | 0.154990 | 1_1:-5791094 | Msa0003290:CDS |
| AACTTTATTCTTCATAATTA+TGG | 0.177081 | 1_1:+5786891 | None:intergenic |
| TTTAGGCTTGTATGGTTTAT+TGG | 0.180144 | 1_1:+5789650 | None:intergenic |
| GACAGAAGTTTCACATTTAA+TGG | 0.195286 | 1_1:-5787986 | Msa0003290:CDS |
| CTGACTTCCATGATTCAAAA+TGG | 0.224983 | 1_1:+5787801 | None:intergenic |
| TGAGTGTCAATGTATTTATT+TGG | 0.236454 | 1_1:-5786766 | Msa0003290:three_prime_UTR |
| AATTACAAATCAACCTTAAA+AGG | 0.254271 | 1_1:+5790385 | None:intergenic |
| CAGGCATATGTATTCTCTTC+AGG | 0.280229 | 1_1:-5788921 | Msa0003290:CDS |
| CACAAACAGGTTGGCCTAAA+GGG | 0.285334 | 1_1:-5787593 | Msa0003290:intron |
| TCCTTCAAATGACCATATTT+AGG | 0.289683 | 1_1:+5789098 | None:intergenic |
| TCAAGACCATGAAGCAAAAT+TGG | 0.291254 | 1_1:+5787767 | None:intergenic |
| GGAAGAGCACTTGGAGCTTC+TGG | 0.302471 | 1_1:-5790018 | Msa0003290:CDS |
| AATCACAGCTTCTAGACTTC+TGG | 0.310113 | 1_1:-5788556 | Msa0003290:CDS |
| CTGGTCATGCATACTCAAAC+TGG | 0.311005 | 1_1:-5789999 | Msa0003290:CDS |
| CAAGAGTAACCTTCAATAAT+AGG | 0.311719 | 1_1:-5788851 | Msa0003290:CDS |
| TTATTGATACTTATGTGTTT+TGG | 0.314153 | 1_1:-5790823 | Msa0003290:CDS |
| TTAGGCTTGTATGGTTTATT+GGG | 0.316421 | 1_1:+5789651 | None:intergenic |
| GTTGTATTAGTCATTAAATT+TGG | 0.316432 | 1_1:+5786963 | None:intergenic |
| GGCTAACTCACCACTGGATC+TGG | 0.328635 | 1_1:+5789910 | None:intergenic |
| GATCCTACTGTTACATCATT+AGG | 0.334094 | 1_1:-5789029 | Msa0003290:CDS |
| TATACTTCAGGGGTGCTTCT+TGG | 0.336445 | 1_1:+5790977 | None:intergenic |
| TAGAATTGCTAGGCAACATT+TGG | 0.341066 | 1_1:+5788637 | None:intergenic |
| TTGTAGATTGAGAATGAGTA+TGG | 0.341574 | 1_1:-5790048 | Msa0003290:intron |
| GTTTGGTTGAAGTATGTTCC+TGG | 0.342045 | 1_1:-5790433 | Msa0003290:CDS |
| TACTCATGCAATTATTTAGT+TGG | 0.353458 | 1_1:-5786664 | Msa0003290:three_prime_UTR |
| GTCCATAGTTTAGGCTTGTA+TGG | 0.356806 | 1_1:+5789642 | None:intergenic |
| GGCATTGGACATGAGCAGTA+TGG | 0.356871 | 1_1:-5787348 | Msa0003290:CDS |
| CACTAACCATATTCATCAAT+TGG | 0.357740 | 1_1:+5789211 | None:intergenic |
| AAATTTGGTTTACTAGATCT+TGG | 0.359025 | 1_1:+5786978 | None:intergenic |
| CTTTATGTACATCTTAGAAT+TGG | 0.367311 | 1_1:-5790594 | Msa0003290:CDS |
| TTGTTAAGAGAACCTAAATA+TGG | 0.367945 | 1_1:-5789110 | Msa0003290:CDS |
| GACAAAGCATAGGAAGATAT+TGG | 0.368369 | 1_1:-5787301 | Msa0003290:CDS |
| CAAGCAATGTGAACATGCTT+TGG | 0.368637 | 1_1:-5789060 | Msa0003290:CDS |
| TAAGTATCCTCCCTGATTGT+AGG | 0.369275 | 1_1:-5788803 | Msa0003290:CDS |
| TGTGTAGAGGATTTCCTGTT+TGG | 0.373160 | 1_1:-5790450 | Msa0003290:intron |
| GATGCTCCAATTGATGAATA+TGG | 0.376118 | 1_1:-5789217 | Msa0003290:intron |
| AACCATACAAGCCTAAACTA+TGG | 0.381218 | 1_1:-5789644 | Msa0003290:CDS |
| ACTAATTTCGGACGATCGGC+TGG | 0.381654 | 1_1:-5789271 | Msa0003290:CDS |
| AATACATCTGTCCTACAATC+AGG | 0.390545 | 1_1:+5788792 | None:intergenic |
| AGCAAACTATCATTCGAATT+CGG | 0.392194 | 1_1:-5788877 | Msa0003290:CDS |
| AAGAATTAGGAGGGAATCCT+TGG | 0.392838 | 1_1:-5787034 | Msa0003290:CDS |
| ACAATCAGGGAGGATACTTA+TGG | 0.396888 | 1_1:+5788806 | None:intergenic |
| GATTAGGTACAGGTGTCCCT+TGG | 0.398070 | 1_1:-5789957 | Msa0003290:CDS |
| ATCAGTTTCAGAACAGATAA+TGG | 0.399070 | 1_1:-5790409 | Msa0003290:CDS |
| AGTTGCTCGTTTCATACAAA+AGG | 0.399519 | 1_1:-5789426 | Msa0003290:CDS |
| GAGATACTAGTGACTATCTA+TGG | 0.403562 | 1_1:-5788515 | Msa0003290:CDS |
| GCAATTCTAAGTTGTTATCA+TGG | 0.405026 | 1_1:-5788623 | Msa0003290:CDS |
| GAATAGTAAGAGAAGAAGCT+TGG | 0.405168 | 1_1:+5791114 | None:intergenic |
| CATGCAATTATTTAGTTGGT+TGG | 0.405645 | 1_1:-5786660 | Msa0003290:three_prime_UTR |
| CTCCAAGTGCTCTTCCTTGT+GGG | 0.408569 | 1_1:+5790025 | None:intergenic |
| GTATGGGAAAGGGTCAAGTA+TGG | 0.409540 | 1_1:-5787331 | Msa0003290:CDS |
| ACTACCATCAAGTTGTTTGT+TGG | 0.414792 | 1_1:+5787062 | None:intergenic |
| GAGATCCTGAACTGGTCGCT+GGG | 0.418111 | 1_1:+5789457 | None:intergenic |
| TACCACGGAGGAACTAATTT+CGG | 0.421462 | 1_1:-5789283 | Msa0003290:CDS |
| GTCATAGTGCCTATTATTGA+AGG | 0.422552 | 1_1:+5788842 | None:intergenic |
| AAAACCAGCCACAGTTGAAA+TGG | 0.423005 | 1_1:-5787499 | Msa0003290:CDS |
| CAGAGATGAGGATTCTCCTT+TGG | 0.426691 | 1_1:+5791014 | None:intergenic |
| TATTGGATGGTTTATGCAAA+GGG | 0.430224 | 1_1:-5787284 | Msa0003290:CDS |
| GTTTGTGCTGAGTGGAACTT+TGG | 0.434468 | 1_1:-5790564 | Msa0003290:CDS |
| CGAGATCCTGAACTGGTCGC+TGG | 0.435286 | 1_1:+5789456 | None:intergenic |
| GAATCCTTGGAAAATATCTC+TGG | 0.443768 | 1_1:-5787021 | Msa0003290:CDS |
| ATGGAGTCTCATCTGTTGAT+TGG | 0.444222 | 1_1:-5787544 | Msa0003290:CDS |
| ATATATATCTGCATAATTGT+TGG | 0.444889 | 1_1:-5786622 | Msa0003290:three_prime_UTR |
| CAAGACTCAGTCCATAGTTT+AGG | 0.452569 | 1_1:+5789633 | None:intergenic |
| TGTGCCATTTCAACTGTGGC+TGG | 0.453005 | 1_1:+5787495 | None:intergenic |
| CTGTCAAATCCTTCTGTCCA+TGG | 0.453029 | 1_1:+5787744 | None:intergenic |
| GGCACTATGACTTGCCTCCT+TGG | 0.459047 | 1_1:-5788830 | Msa0003290:CDS |
| ATTGCTTGATAGCTTTATGA+AGG | 0.461553 | 1_1:+5789075 | None:intergenic |
| CGAAGATACATCTTCATCAT+AGG | 0.461768 | 1_1:+5788596 | None:intergenic |
| GCACTTCTTAGTGTAGCTGT+TGG | 0.465181 | 1_1:-5787929 | Msa0003290:CDS |
| GGAACATACTTCAACCAAAC+AGG | 0.465558 | 1_1:+5790436 | None:intergenic |
| TTCCAGAATAATACATTGCC+AGG | 0.466558 | 1_1:+5790782 | None:intergenic |
| AGCATTAGTGTGCATTCCTC+TGG | 0.470893 | 1_1:-5788287 | Msa0003290:CDS |
| GCCAATGGTTCAACTCCATC+AGG | 0.472547 | 1_1:+5787368 | None:intergenic |
| AAAACCAACAAACAACTTGA+TGG | 0.473330 | 1_1:-5787066 | Msa0003290:CDS |
| ATTAGGTACAGGTGTCCCTT+GGG | 0.473811 | 1_1:-5789956 | Msa0003290:CDS |
| AGAAAAGCTATTATCATCAA+TGG | 0.476920 | 1_1:-5791037 | Msa0003290:CDS |
| GGAAAATATCTCTGGTAAAG+AGG | 0.478631 | 1_1:-5787013 | Msa0003290:CDS |
| AATGTTCATGAACCTTCTCC+TGG | 0.479007 | 1_1:-5790800 | Msa0003290:CDS |
| ATCATTAGGAGCATATGAAC+AGG | 0.480489 | 1_1:-5789015 | Msa0003290:intron |
| AAGAAGCTTGGAAACTGAGT+TGG | 0.482640 | 1_1:+5791126 | None:intergenic |
| GAATTCTATATAGTTTCCAT+TGG | 0.484396 | 1_1:-5786849 | Msa0003290:three_prime_UTR |
| GCTCCAAGTGCTCTTCCTTG+TGG | 0.484823 | 1_1:+5790024 | None:intergenic |
| GGCCCTATCGACCTACGTGC+TGG | 0.488146 | 1_1:-5787965 | Msa0003290:CDS |
| GCACAAACAGGTTGGCCTAA+AGG | 0.491604 | 1_1:-5787594 | Msa0003290:intron |
| CAAAGGAGAATCCTCATCTC+TGG | 0.492293 | 1_1:-5791013 | Msa0003290:CDS |
| GCTAACTCACCACTGGATCT+GGG | 0.494475 | 1_1:+5789911 | None:intergenic |
| GCGAAATGCCAAGTTGGTTG+TGG | 0.495089 | 1_1:-5787221 | Msa0003290:CDS |
| TGGAGTCTCATCTGTTGATT+GGG | 0.497847 | 1_1:-5787543 | Msa0003290:CDS |
| TTCATTCTTTAATTATTACA+TGG | 0.500991 | 1_1:-5789399 | Msa0003290:intron |
| CATGGACAGAAGGATTTGAC+AGG | 0.501539 | 1_1:-5787743 | Msa0003290:CDS |
| CTAAACTATGGACTGAGTCT+TGG | 0.504621 | 1_1:-5789632 | Msa0003290:CDS |
| TTCCACTCAGCACAAACATA+AGG | 0.505669 | 1_1:+5790570 | None:intergenic |
| TGCAATTCTTGCAACTATGC+CGG | 0.505723 | 1_1:-5787257 | Msa0003290:CDS |
| GTTCCAGCACGTAGGTCGAT+AGG | 0.511189 | 1_1:+5787962 | None:intergenic |
| CTGATTCAGAAAGCAAAAGA+TGG | 0.512055 | 1_1:-5790857 | Msa0003290:CDS |
| GCTGTCCATGTGTTTATCAA+TGG | 0.515626 | 1_1:-5788260 | Msa0003290:CDS |
| TTTGTGCTGAGTGGAACTTT+GGG | 0.518987 | 1_1:-5790563 | Msa0003290:intron |
| TTTGGTTGAAGTATGTTCCT+GGG | 0.520726 | 1_1:-5790432 | Msa0003290:CDS |
| GGTACCATGTTCCAAGGTCC+TGG | 0.521759 | 1_1:-5787091 | Msa0003290:CDS |
| CAGAATCATTTCTTCGTGGA+AGG | 0.526155 | 1_1:-5788319 | Msa0003290:CDS |
| AAGGGTCAAGTATGGATCAA+TGG | 0.526204 | 1_1:-5787323 | Msa0003290:CDS |
| GGCCCACAAGGAAGAGCACT+TGG | 0.526726 | 1_1:-5790027 | Msa0003290:CDS |
| ATGAATTTGGTGTCTCCCAA+TGG | 0.527375 | 1_1:-5787563 | Msa0003290:CDS |
| TGTCCCTTGGGTGATGTGTA+AGG | 0.528527 | 1_1:-5789944 | Msa0003290:CDS |
| GGTGCTTCTTGGATAATGAA+TGG | 0.528944 | 1_1:+5790988 | None:intergenic |
| GCGAACGCGAGATCCTGAAC+TGG | 0.530322 | 1_1:+5789449 | None:intergenic |
| CTGTCCATGTGTTTATCAAT+GGG | 0.530690 | 1_1:-5788259 | Msa0003290:CDS |
| TCATAGCTTGTAGTTATGAA+TGG | 0.530733 | 1_1:+5789244 | None:intergenic |
| CTATGCCGGAACTTATCGTC+AGG | 0.531405 | 1_1:-5787243 | Msa0003290:CDS |
| CAATTCTAAGTTGTTATCAT+GGG | 0.532316 | 1_1:-5788622 | Msa0003290:CDS |
| TTTCGCCTGACGATAAGTTC+CGG | 0.532860 | 1_1:+5787238 | None:intergenic |
| ACAAACAGGTTGGCCTAAAG+GGG | 0.533011 | 1_1:-5787592 | Msa0003290:intron |
| ACCTAAATATGGTCATTTGA+AGG | 0.533113 | 1_1:-5789099 | Msa0003290:CDS |
| ATGGCTGTTGGATTAGGTAC+AGG | 0.534625 | 1_1:-5789967 | Msa0003290:CDS |
| TGGAGTTGAACCATTGGCAT+TGG | 0.539466 | 1_1:-5787363 | Msa0003290:CDS |
| CTACAGATAAATGCTTGCAA+TGG | 0.542639 | 1_1:-5789696 | Msa0003290:intron |
| GGACATGAGCAGTATGGGAA+AGG | 0.544160 | 1_1:-5787342 | Msa0003290:CDS |
| AGAATAAATTAATAAGAACT+TGG | 0.544222 | 1_1:+5786796 | None:intergenic |
| GCATTGGACATGAGCAGTAT+GGG | 0.544484 | 1_1:-5787347 | Msa0003290:CDS |
| TCATGGAAGTCAGGAATCAC+AGG | 0.550670 | 1_1:-5787791 | Msa0003290:CDS |
| GGCAACATTTGGATTTGTGA+AGG | 0.551117 | 1_1:+5788648 | None:intergenic |
| ATCAACAGATGAGACTCCAT+TGG | 0.551457 | 1_1:+5787547 | None:intergenic |
| TTCCAGCACGTAGGTCGATA+GGG | 0.552030 | 1_1:+5787963 | None:intergenic |
| GAGGAATGCACACTAATGCT+TGG | 0.552794 | 1_1:+5788290 | None:intergenic |
| GTTGCTCGTTTCATACAAAA+GGG | 0.552827 | 1_1:-5789425 | Msa0003290:CDS |
| AATAATACATTGCCAGGAGA+AGG | 0.553523 | 1_1:+5790788 | None:intergenic |
| GCACATTTCAATGCACCTGA+TGG | 0.556406 | 1_1:-5787383 | Msa0003290:CDS |
| CGTCAGGCGAAATGCCAAGT+TGG | 0.557079 | 1_1:-5787227 | Msa0003290:CDS |
| TCAACAGATGAGACTCCATT+GGG | 0.557160 | 1_1:+5787548 | None:intergenic |
| TGGTCTTGACCATGGACAGA+AGG | 0.557257 | 1_1:-5787753 | Msa0003290:CDS |
| ATATTGGATGGTTTATGCAA+AGG | 0.557748 | 1_1:-5787285 | Msa0003290:CDS |
| TAGGCTGTCCACAACCAACT+TGG | 0.558476 | 1_1:+5787213 | None:intergenic |
| GTTTGCTAGAAAAGCTGCAC+AGG | 0.559158 | 1_1:+5788893 | None:intergenic |
| GGACTGAGTCTTGGAGTGGT+TGG | 0.562040 | 1_1:-5789623 | Msa0003290:intron |
| TATCAATCATGCTATGCCAA+TGG | 0.564435 | 1_1:+5786833 | None:intergenic |
| AATTAGTACCATCTTTGAGT+AGG | 0.565328 | 1_1:+5787194 | None:intergenic |
| TCATCAGAATCATTTCTTCG+TGG | 0.567472 | 1_1:-5788323 | Msa0003290:CDS |
| GACATGAGCAGTATGGGAAA+GGG | 0.570823 | 1_1:-5787341 | Msa0003290:CDS |
| AGATCCTGAACTGGTCGCTG+GGG | 0.571024 | 1_1:+5789458 | None:intergenic |
| TTGCTTCATGGTCTTGACCA+TGG | 0.573358 | 1_1:-5787761 | Msa0003290:CDS |
| TTTGCAGGTACCATGTTCCA+AGG | 0.574539 | 1_1:-5787097 | Msa0003290:intron |
| GAAAGCAAAAGATGGAGGGT+TGG | 0.574643 | 1_1:-5790849 | Msa0003290:CDS |
| GATAACAACTTAGAATTGCT+AGG | 0.576031 | 1_1:+5788627 | None:intergenic |
| GTTCTGTTATCTCTGTGAGT+GGG | 0.586337 | 1_1:+5791253 | None:intergenic |
| ACCTTGTGCCATTTCAACTG+TGG | 0.587399 | 1_1:+5787491 | None:intergenic |
| CTGCTCATGTCCAATGCCAA+TGG | 0.594494 | 1_1:+5787353 | None:intergenic |
| TCTGTTCTGAAACTGATCCC+AGG | 0.600350 | 1_1:+5790415 | None:intergenic |
| TAACAACACAACATTGTCGT+AGG | 0.602557 | 1_1:-5791307 | Msa0003290:five_prime_UTR |
| GATCCTGAACTGGTCGCTGG+GGG | 0.602834 | 1_1:+5789459 | None:intergenic |
| TGTTCTGTTATCTCTGTGAG+TGG | 0.603781 | 1_1:+5791252 | None:intergenic |
| TGGATCAATGGACAAAGCAT+AGG | 0.604928 | 1_1:-5787311 | Msa0003290:CDS |
| ATACATCTGTCCTACAATCA+GGG | 0.605634 | 1_1:+5788793 | None:intergenic |
| TTAACCAGGACCTTGGAACA+TGG | 0.606779 | 1_1:+5787087 | None:intergenic |
| GCTCCTAATGATGTAACAGT+AGG | 0.606807 | 1_1:+5789026 | None:intergenic |
| ACCTGATGGAGTTGAACCAT+TGG | 0.609035 | 1_1:-5787369 | Msa0003290:CDS |
| AAGCATAGGAAGATATTGGA+TGG | 0.609264 | 1_1:-5787297 | Msa0003290:CDS |
| GAGAATGAGTATGGCCCACA+AGG | 0.610168 | 1_1:-5790039 | Msa0003290:CDS |
| GACCTTATGTTTGTGCTGAG+TGG | 0.610645 | 1_1:-5790572 | Msa0003290:CDS |
| ATTTCCCATTGATAAACACA+TGG | 0.611686 | 1_1:+5788255 | None:intergenic |
| AGGAACTAATTTCGGACGAT+CGG | 0.614751 | 1_1:-5789275 | Msa0003290:CDS |
| TTCAGAAAGCAAAAGATGGA+GGG | 0.615815 | 1_1:-5790853 | Msa0003290:CDS |
| GTGGACAGCCTACTCAAAGA+TGG | 0.615918 | 1_1:-5787202 | Msa0003290:intron |
| ATTCAGAAAGCAAAAGATGG+AGG | 0.619685 | 1_1:-5790854 | Msa0003290:CDS |
| GAAAAGCTGTTTCAGTCACA+AGG | 0.621291 | 1_1:-5790222 | Msa0003290:CDS |
| TGGTCATGCATACTCAAACT+GGG | 0.624854 | 1_1:-5789998 | Msa0003290:CDS |
| AATTTCGGACGATCGGCTGG+AGG | 0.627314 | 1_1:-5789268 | Msa0003290:CDS |
| TCTTCCTTACACATCACCCA+AGG | 0.629739 | 1_1:+5789940 | None:intergenic |
| AGATGATGCCCCAGATCCAG+TGG | 0.631725 | 1_1:-5789920 | Msa0003290:intron |
| CTAACTCACCACTGGATCTG+GGG | 0.639843 | 1_1:+5789912 | None:intergenic |
| GCTCGTTTCATACAAAAGGG+TGG | 0.641579 | 1_1:-5789422 | Msa0003290:CDS |
| ATTGACTTGGCATCAAACAA+AGG | 0.645701 | 1_1:-5786916 | Msa0003290:three_prime_UTR |
| ACTATCTATGGTATATAACC+AGG | 0.648277 | 1_1:-5788503 | Msa0003290:intron |
| AATGAATGGAACCAGAGATG+AGG | 0.654785 | 1_1:+5791002 | None:intergenic |
| CAAACAGGTTGGCCTAAAGG+GGG | 0.660115 | 1_1:-5787591 | Msa0003290:intron |
| CTATTATCATCAATGGCCAA+AGG | 0.665404 | 1_1:-5791030 | Msa0003290:CDS |
| CTTCCTTACACATCACCCAA+GGG | 0.670888 | 1_1:+5789941 | None:intergenic |
| TAGTATAGTATATACTTCAG+GGG | 0.680900 | 1_1:+5790967 | None:intergenic |
| GGGAGGATACTTATGGACCA+AGG | 0.681332 | 1_1:+5788813 | None:intergenic |
| CTATGGACTGAGTCTTGGAG+TGG | 0.682332 | 1_1:-5789627 | Msa0003290:CDS |
| TGAAGATGTATCTTCGCTAG+CGG | 0.687691 | 1_1:-5788589 | Msa0003290:CDS |
| CACATGGACAGCATCACCAG+AGG | 0.689285 | 1_1:+5788271 | None:intergenic |
| GCCACAGTTGAAATGGCACA+AGG | 0.694536 | 1_1:-5787492 | Msa0003290:intron |
| GTCCGAAATTAGTTCCTCCG+TGG | 0.697646 | 1_1:+5789281 | None:intergenic |
| CATAGCATGATTGATACGAG+AGG | 0.704572 | 1_1:-5786826 | Msa0003290:three_prime_UTR |
| AAGCTGTTTCAGTCACAAGG+TGG | 0.721266 | 1_1:-5790219 | Msa0003290:CDS |
| AATGACAAATGATAGTACCA+CGG | 0.725388 | 1_1:-5789298 | Msa0003290:intron |
| ATGGACAGAAGGATTTGACA+GGG | 0.731802 | 1_1:-5787742 | Msa0003290:CDS |
| GAAATGTGTGTAGATGTGGG+AGG | 0.739680 | 1_1:-5790882 | Msa0003290:intron |
| AGGATACTTATGGACCAAGG+AGG | 0.747272 | 1_1:+5788816 | None:intergenic |
| CATCTGTCCTACAATCAGGG+AGG | 0.749201 | 1_1:+5788796 | None:intergenic |
| GACAAATGATAGTACCACGG+AGG | 0.759475 | 1_1:-5789295 | Msa0003290:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGAAAAAAAAAACTTTT+AGG | - | chr1_1:5787636-5787655 | Msa0003290:intron | 10.0% |
| !! | AACTTCAAACATTTATTATT+TGG | - | chr1_1:5787399-5787418 | Msa0003290:intron | 15.0% |
| !! | TTCATTCTTTAATTATTACA+TGG | - | chr1_1:5788529-5788548 | Msa0003290:CDS | 15.0% |
| !! | TATTAATGAATTGATTGTTA+TGG | - | chr1_1:5789235-5789254 | Msa0003290:CDS | 15.0% |
| !!! | TTTTCTTTTTTTTCATAGAA+TGG | - | chr1_1:5790098-5790117 | Msa0003290:intron | 15.0% |
| !! | AACTTTATTCTTCATAATTA+TGG | + | chr1_1:5791040-5791059 | None:intergenic | 15.0% |
| !! | AGAATAAATTAATAAGAACT+TGG | + | chr1_1:5791135-5791154 | None:intergenic | 15.0% |
| !! | ATAGTATAGTATATACTTCA+GGG | + | chr1_1:5786965-5786984 | None:intergenic | 20.0% |
| !! | AATAGTATAGTATATACTTC+AGG | + | chr1_1:5786966-5786985 | None:intergenic | 20.0% |
| !!! | TTATTGATACTTATGTGTTT+TGG | - | chr1_1:5787105-5787124 | Msa0003290:intron | 20.0% |
| !! | AATTACAAATCAACCTTAAA+AGG | + | chr1_1:5787546-5787565 | None:intergenic | 20.0% |
| !! | TTATGTAGTTAATTCTTGAA+TGG | - | chr1_1:5787581-5787600 | Msa0003290:CDS | 20.0% |
| !! | ATTTAGATTAACAATGAGTT+TGG | + | chr1_1:5788162-5788181 | None:intergenic | 20.0% |
| !! | ACTCTATTATCTTAACTAAA+AGG | + | chr1_1:5788192-5788211 | None:intergenic | 20.0% |
| !! | ATTTATCTGTAGGAAAAAAT+TGG | + | chr1_1:5788224-5788243 | None:intergenic | 20.0% |
| !! | ACAACTAACTTCATAAATAA+TGG | + | chr1_1:5788344-5788363 | None:intergenic | 20.0% |
| !! | TTCTTTAATTATTACATGGT+TGG | - | chr1_1:5788533-5788552 | Msa0003290:CDS | 20.0% |
| !! | CTAAAGTAATGACTATATTT+AGG | + | chr1_1:5788764-5788783 | None:intergenic | 20.0% |
| !!! | TTGGTATTTTTAAATCTAGA+GGG | + | chr1_1:5789462-5789481 | None:intergenic | 20.0% |
| !! | ATTTAAAAATACCAAGCTAT+TGG | - | chr1_1:5789467-5789486 | Msa0003290:CDS | 20.0% |
| !! | ATAATTCGGTTAAAATTAGT+TGG | - | chr1_1:5789727-5789746 | Msa0003290:intron | 20.0% |
| !! | GTTGTATTAGTCATTAAATT+TGG | + | chr1_1:5790968-5790987 | None:intergenic | 20.0% |
| !! | ATATATATCTGCATAATTGT+TGG | - | chr1_1:5791306-5791325 | Msa0003290:five_prime_UTR | 20.0% |
| ! | AGAAAAGCTATTATCATCAA+TGG | - | chr1_1:5786891-5786910 | Msa0003290:three_prime_UTR | 25.0% |
| ! | TAGTATAGTATATACTTCAG+GGG | + | chr1_1:5786964-5786983 | None:intergenic | 25.0% |
| ! | CTTTATGTACATCTTAGAAT+TGG | - | chr1_1:5787334-5787353 | Msa0003290:CDS | 25.0% |
| !!! | GTTTTTTTATTTGTGTGTAG+AGG | - | chr1_1:5787465-5787484 | Msa0003290:intron | 25.0% |
| ! | CTTACTTGTGAAAGAATTAT+TGG | + | chr1_1:5787736-5787755 | None:intergenic | 25.0% |
| ! | TTGTTAAGAGAACCTAAATA+TGG | - | chr1_1:5788818-5788837 | Msa0003290:CDS | 25.0% |
| !!! | CAGTGTTTTAGAAGTTATTT+CGG | + | chr1_1:5788956-5788975 | None:intergenic | 25.0% |
| ! | CAATTCTAAGTTGTTATCAT+GGG | - | chr1_1:5789306-5789325 | Msa0003290:intron | 25.0% |
| !!! | CTTGGTATTTTTAAATCTAG+AGG | + | chr1_1:5789463-5789482 | None:intergenic | 25.0% |
| !! | AGTTGAAATCTTACTGTTTT+TGG | - | chr1_1:5789554-5789573 | Msa0003290:intron | 25.0% |
| !!! | GTTGAAATCTTACTGTTTTT+GGG | - | chr1_1:5789555-5789574 | Msa0003290:intron | 25.0% |
| !! | TTTATCAATGGGAAATTTTC+AGG | - | chr1_1:5789680-5789699 | Msa0003290:CDS | 25.0% |
| ! | TAAACCAAGATGAGATAATT+CGG | - | chr1_1:5789713-5789732 | Msa0003290:intron | 25.0% |
| ! | CATAAAATGTATCTTAGACT+CGG | - | chr1_1:5789832-5789851 | Msa0003290:intron | 25.0% |
| !!! | TCTTTTTTTTCATAGAATGG+TGG | - | chr1_1:5790101-5790120 | Msa0003290:intron | 25.0% |
| ! | TGCTATATTACTATTGCATA+AGG | - | chr1_1:5790285-5790304 | Msa0003290:intron | 25.0% |
| ! | AATTATGTATATGCACAAAC+AGG | - | chr1_1:5790322-5790341 | Msa0003290:intron | 25.0% |
| !! | TAATCTAATTTGAAACCTTC+AGG | - | chr1_1:5790523-5790542 | Msa0003290:intron | 25.0% |
| ! | AACATTACTTCCTTATCTTT+AGG | - | chr1_1:5790778-5790797 | Msa0003290:intron | 25.0% |
| !! | ACTTATTACTTCAATTTTGC+AGG | - | chr1_1:5790816-5790835 | Msa0003290:CDS | 25.0% |
| !!! | ATGGTAGTTTTTGAAGAATT+AGG | - | chr1_1:5790881-5790900 | Msa0003290:intron | 25.0% |
| !!! | TAGTTTTTGAAGAATTAGGA+GGG | - | chr1_1:5790885-5790904 | Msa0003290:intron | 25.0% |
| !! | AAATTTGGTTTACTAGATCT+TGG | + | chr1_1:5790953-5790972 | None:intergenic | 25.0% |
| ! | GAATTCTATATAGTTTCCAT+TGG | - | chr1_1:5791079-5791098 | Msa0003290:CDS | 25.0% |
| ! | TGAGTGTCAATGTATTTATT+TGG | - | chr1_1:5791162-5791181 | Msa0003290:five_prime_UTR | 25.0% |
| ! | TACTCATGCAATTATTTAGT+TGG | - | chr1_1:5791264-5791283 | Msa0003290:five_prime_UTR | 25.0% |
| !!! | TGGAGGGAAATTTTTTGAAA+TGG | + | chr1_1:5786760-5786779 | None:intergenic | 30.0% |
| !!! | TAGCTTTTTTCTACAATGGA+GGG | + | chr1_1:5786776-5786795 | None:intergenic | 30.0% |
| !!! | ATAGCTTTTTTCTACAATGG+AGG | + | chr1_1:5786777-5786796 | None:intergenic | 30.0% |
| TCCATTGTAGAAAAAAGCTA+TGG | - | chr1_1:5786776-5786795 | Msa0003290:three_prime_UTR | 30.0% | |
| !!! | TCCATAGCTTTTTTCTACAA+TGG | + | chr1_1:5786780-5786799 | None:intergenic | 30.0% |
| TTCTTCTCTATCTTCTTTCT+TGG | - | chr1_1:5786834-5786853 | Msa0003290:three_prime_UTR | 30.0% | |
| ! | TTTGAAATGTGTGTAGATGT+GGG | - | chr1_1:5787043-5787062 | Msa0003290:CDS | 30.0% |
| !! | CAATGTATTATTCTGGAATC+TGG | - | chr1_1:5787151-5787170 | Msa0003290:intron | 30.0% |
| ATTAAGACAGTGCAGAAAAA+AGG | - | chr1_1:5787310-5787329 | Msa0003290:CDS | 30.0% | |
| ATCAGTTTCAGAACAGATAA+TGG | - | chr1_1:5787519-5787538 | Msa0003290:CDS | 30.0% | |
| !! | AACAGATAATGGTCCTTTTA+AGG | - | chr1_1:5787530-5787549 | Msa0003290:CDS | 30.0% |
| TTGTAGATTGAGAATGAGTA+TGG | - | chr1_1:5787880-5787899 | Msa0003290:intron | 30.0% | |
| TTCCAAATTTGCACTAAATC+AGG | + | chr1_1:5788058-5788077 | None:intergenic | 30.0% | |
| ! | TTAGTGCAAATTTGGAATGA+CGG | - | chr1_1:5788061-5788080 | Msa0003290:intron | 30.0% |
| ! | AACTTTTGCTAAAATCACAG+TGG | - | chr1_1:5788121-5788140 | Msa0003290:intron | 30.0% |
| TTAGGCTTGTATGGTTTATT+GGG | + | chr1_1:5788280-5788299 | None:intergenic | 30.0% | |
| TTTAGGCTTGTATGGTTTAT+TGG | + | chr1_1:5788281-5788300 | None:intergenic | 30.0% | |
| GAAGTTAGTTGTGAAAACAA+TGG | - | chr1_1:5788352-5788371 | Msa0003290:intron | 30.0% | |
| AATGACAAATGATAGTACCA+CGG | - | chr1_1:5788630-5788649 | Msa0003290:CDS | 30.0% | |
| ! | TCATAGCTTGTAGTTATGAA+TGG | + | chr1_1:5788687-5788706 | None:intergenic | 30.0% |
| CACTAACCATATTCATCAAT+TGG | + | chr1_1:5788720-5788739 | None:intergenic | 30.0% | |
| ACCTAAATATGGTCATTTGA+AGG | - | chr1_1:5788829-5788848 | Msa0003290:CDS | 30.0% | |
| TCCTTCAAATGACCATATTT+AGG | + | chr1_1:5788833-5788852 | None:intergenic | 30.0% | |
| !! | ATTGCTTGATAGCTTTATGA+AGG | + | chr1_1:5788856-5788875 | None:intergenic | 30.0% |
| !!! | TGTTTTAGAAGTTATTTCGG+AGG | + | chr1_1:5788953-5788972 | None:intergenic | 30.0% |
| TAACAATGATCTATGTTTCC+AGG | - | chr1_1:5788988-5789007 | Msa0003290:intron | 30.0% | |
| AGCAAACTATCATTCGAATT+CGG | - | chr1_1:5789051-5789070 | Msa0003290:CDS | 30.0% | |
| CAAGAGTAACCTTCAATAAT+AGG | - | chr1_1:5789077-5789096 | Msa0003290:CDS | 30.0% | |
| ACTGCAAGAGTAAGAATAAA+AGG | - | chr1_1:5789163-5789182 | Msa0003290:intron | 30.0% | |
| CTGCAAGAGTAAGAATAAAA+GGG | - | chr1_1:5789164-5789183 | Msa0003290:intron | 30.0% | |
| GATAACAACTTAGAATTGCT+AGG | + | chr1_1:5789304-5789323 | None:intergenic | 30.0% | |
| GCAATTCTAAGTTGTTATCA+TGG | - | chr1_1:5789305-5789324 | Msa0003290:intron | 30.0% | |
| ACTATCTATGGTATATAACC+AGG | - | chr1_1:5789425-5789444 | Msa0003290:CDS | 30.0% | |
| ATTTCCCATTGATAAACACA+TGG | + | chr1_1:5789676-5789695 | None:intergenic | 30.0% | |
| TTAACCGAATTATCTCATCT+TGG | + | chr1_1:5789720-5789739 | None:intergenic | 30.0% | |
| TTTAGGTAGTAGATAGAAGT+TGG | - | chr1_1:5789757-5789776 | Msa0003290:intron | 30.0% | |
| GACAGAAGTTTCACATTTAA+TGG | - | chr1_1:5789942-5789961 | Msa0003290:CDS | 30.0% | |
| GTAATAAGCAAGATACTAAC+AGG | + | chr1_1:5790029-5790048 | None:intergenic | 30.0% | |
| AGACATGATAAAGTTCAAGT+TGG | + | chr1_1:5790053-5790072 | None:intergenic | 30.0% | |
| TCGTTAAATAGTTGCTATAG+CGG | - | chr1_1:5790262-5790281 | Msa0003290:CDS | 30.0% | |
| ATATTGGATGGTTTATGCAA+AGG | - | chr1_1:5790643-5790662 | Msa0003290:CDS | 30.0% | |
| TATTGGATGGTTTATGCAAA+GGG | - | chr1_1:5790644-5790663 | Msa0003290:CDS | 30.0% | |
| AATTAGTACCATCTTTGAGT+AGG | + | chr1_1:5790737-5790756 | None:intergenic | 30.0% | |
| ! | GTAGCATTTTCCTAAAGATA+AGG | + | chr1_1:5790791-5790810 | None:intergenic | 30.0% |
| AAAACCAACAAACAACTTGA+TGG | - | chr1_1:5790862-5790881 | Msa0003290:CDS | 30.0% | |
| !! | GTAGTTTTTGAAGAATTAGG+AGG | - | chr1_1:5790884-5790903 | Msa0003290:intron | 30.0% |
| ! | TTTACCAGAGATATTTTCCA+AGG | + | chr1_1:5790914-5790933 | None:intergenic | 30.0% |
| CACAAGTATGAGAACAAAAA+TGG | - | chr1_1:5790987-5791006 | Msa0003290:CDS | 30.0% | |
| AACAAAAATGGTGATTGACT+TGG | - | chr1_1:5790999-5791018 | Msa0003290:CDS | 30.0% | |
| !!! | GTTTTTTATATATGCAGCTG+TGG | - | chr1_1:5791057-5791076 | Msa0003290:CDS | 30.0% |
| CATGCAATTATTTAGTTGGT+TGG | - | chr1_1:5791268-5791287 | Msa0003290:five_prime_UTR | 30.0% | |
| TAACAACACAACATTGTCGT+AGG | - | chr1_1:5786621-5786640 | Msa0003290:three_prime_UTR | 35.0% | |
| GAATAGTAAGAGAAGAAGCT+TGG | + | chr1_1:5786817-5786836 | None:intergenic | 35.0% | |
| CTATTATCATCAATGGCCAA+AGG | - | chr1_1:5786898-5786917 | Msa0003290:three_prime_UTR | 35.0% | |
| ! | GTTTGAAATGTGTGTAGATG+TGG | - | chr1_1:5787042-5787061 | Msa0003290:CDS | 35.0% |
| CTGATTCAGAAAGCAAAAGA+TGG | - | chr1_1:5787071-5787090 | Msa0003290:CDS | 35.0% | |
| ATTCAGAAAGCAAAAGATGG+AGG | - | chr1_1:5787074-5787093 | Msa0003290:CDS | 35.0% | |
| TTCAGAAAGCAAAAGATGGA+GGG | - | chr1_1:5787075-5787094 | Msa0003290:CDS | 35.0% | |
| AATAATACATTGCCAGGAGA+AGG | + | chr1_1:5787143-5787162 | None:intergenic | 35.0% | |
| TTCCAGAATAATACATTGCC+AGG | + | chr1_1:5787149-5787168 | None:intergenic | 35.0% | |
| ! | GTGTTGCAGTACAATTTTGA+AGG | - | chr1_1:5787265-5787284 | Msa0003290:CDS | 35.0% |
| !! | TGCAGTACAATTTTGAAGGA+AGG | - | chr1_1:5787269-5787288 | Msa0003290:CDS | 35.0% |
| TTTGGTTGAAGTATGTTCCT+GGG | - | chr1_1:5787496-5787515 | Msa0003290:CDS | 35.0% | |
| TGTGAAAGATCAAGAAAGAG+TGG | - | chr1_1:5787809-5787828 | Msa0003290:CDS | 35.0% | |
| TGCCTGATTTAGTGCAAATT+TGG | - | chr1_1:5788053-5788072 | Msa0003290:intron | 35.0% | |
| CATTGCAAGCATTTATCTGT+AGG | + | chr1_1:5788234-5788253 | None:intergenic | 35.0% | |
| CTACAGATAAATGCTTGCAA+TGG | - | chr1_1:5788232-5788251 | Msa0003290:intron | 35.0% | |
| AACCATACAAGCCTAAACTA+TGG | - | chr1_1:5788284-5788303 | Msa0003290:CDS | 35.0% | |
| AGGAGAAAAGAAGAGCAAAA+GGG | + | chr1_1:5788400-5788419 | None:intergenic | 35.0% | |
| AAGGAGAAAAGAAGAGCAAA+AGG | + | chr1_1:5788401-5788420 | None:intergenic | 35.0% | |
| TGAAAACCTGATGACCAAAT+GGG | + | chr1_1:5788432-5788451 | None:intergenic | 35.0% | |
| ! | GTCATCAGGTTTTCAGAATT+TGG | - | chr1_1:5788437-5788456 | Msa0003290:intron | 35.0% |
| ! | ATCAGGTTTTCAGAATTTGG+TGG | - | chr1_1:5788440-5788459 | Msa0003290:intron | 35.0% |
| AGTTGCTCGTTTCATACAAA+AGG | - | chr1_1:5788502-5788521 | Msa0003290:intron | 35.0% | |
| GTTGCTCGTTTCATACAAAA+GGG | - | chr1_1:5788503-5788522 | Msa0003290:intron | 35.0% | |
| ! | TTATTACATGGTTGGTTACC+TGG | - | chr1_1:5788541-5788560 | Msa0003290:CDS | 35.0% |
| !!! | GTTACCTGGTTCTTTTTTCT+CGG | - | chr1_1:5788555-5788574 | Msa0003290:CDS | 35.0% |
| TTAACCGAGAAAAAAGAACC+AGG | + | chr1_1:5788562-5788581 | None:intergenic | 35.0% | |
| GATGCTCCAATTGATGAATA+TGG | - | chr1_1:5788711-5788730 | Msa0003290:intron | 35.0% | |
| GATCCTACTGTTACATCATT+AGG | - | chr1_1:5788899-5788918 | Msa0003290:CDS | 35.0% | |
| ! | ATCATTAGGAGCATATGAAC+AGG | - | chr1_1:5788913-5788932 | Msa0003290:CDS | 35.0% |
| GTCATAGTGCCTATTATTGA+AGG | + | chr1_1:5789089-5789108 | None:intergenic | 35.0% | |
| ATACATCTGTCCTACAATCA+GGG | + | chr1_1:5789138-5789157 | None:intergenic | 35.0% | |
| AATACATCTGTCCTACAATC+AGG | + | chr1_1:5789139-5789158 | None:intergenic | 35.0% | |
| TAGAATTGCTAGGCAACATT+TGG | + | chr1_1:5789294-5789313 | None:intergenic | 35.0% | |
| CGAAGATACATCTTCATCAT+AGG | + | chr1_1:5789335-5789354 | None:intergenic | 35.0% | |
| GAGATACTAGTGACTATCTA+TGG | - | chr1_1:5789413-5789432 | Msa0003290:CDS | 35.0% | |
| AAAGCAAGGAAAAAGCTAGA+CGG | + | chr1_1:5789521-5789540 | None:intergenic | 35.0% | |
| TCATCAGAATCATTTCTTCG+TGG | - | chr1_1:5789605-5789624 | Msa0003290:intron | 35.0% | |
| CTGTCCATGTGTTTATCAAT+GGG | - | chr1_1:5789669-5789688 | Msa0003290:CDS | 35.0% | |
| !!! | AATTAGTTGGCGTTGGTTTT+AGG | - | chr1_1:5789740-5789759 | Msa0003290:intron | 35.0% |
| ! | TGATTCCTATTTCCTTTTGC+AGG | - | chr1_1:5789897-5789916 | Msa0003290:intron | 35.0% |
| ! | TTTTATTAGTTCCAGCACGT+AGG | + | chr1_1:5789977-5789996 | None:intergenic | 35.0% |
| ! | GTGGAATCCATTTTGAATCA+TGG | - | chr1_1:5790120-5790139 | Msa0003290:intron | 35.0% |
| CTGACTTCCATGATTCAAAA+TGG | + | chr1_1:5790130-5790149 | None:intergenic | 35.0% | |
| ! | CATTTTGAATCATGGAAGTC+AGG | - | chr1_1:5790128-5790147 | Msa0003290:intron | 35.0% |
| TCAAGACCATGAAGCAAAAT+TGG | + | chr1_1:5790164-5790183 | None:intergenic | 35.0% | |
| ATGTATATGCACAAACAGGT+TGG | - | chr1_1:5790326-5790345 | Msa0003290:intron | 35.0% | |
| GACAAAGCATAGGAAGATAT+TGG | - | chr1_1:5790627-5790646 | Msa0003290:CDS | 35.0% | |
| AAGCATAGGAAGATATTGGA+TGG | - | chr1_1:5790631-5790650 | Msa0003290:CDS | 35.0% | |
| !!! | GTTGTTTGTTGGTTTTAACC+AGG | + | chr1_1:5790858-5790877 | None:intergenic | 35.0% |
| ! | ACTACCATCAAGTTGTTTGT+TGG | + | chr1_1:5790869-5790888 | None:intergenic | 35.0% |
| GAATCCTTGGAAAATATCTC+TGG | - | chr1_1:5790907-5790926 | Msa0003290:intron | 35.0% | |
| GGAAAATATCTCTGGTAAAG+AGG | - | chr1_1:5790915-5790934 | Msa0003290:intron | 35.0% | |
| !! | ATTGACTTGGCATCAAACAA+AGG | - | chr1_1:5791012-5791031 | Msa0003290:CDS | 35.0% |
| TATCAATCATGCTATGCCAA+TGG | + | chr1_1:5791098-5791117 | None:intergenic | 35.0% | |
| GTTCTGTTATCTCTGTGAGT+GGG | + | chr1_1:5786678-5786697 | None:intergenic | 40.0% | |
| TGTTCTGTTATCTCTGTGAG+TGG | + | chr1_1:5786679-5786698 | None:intergenic | 40.0% | |
| AAGAAGCTTGGAAACTGAGT+TGG | + | chr1_1:5786805-5786824 | None:intergenic | 40.0% | |
| AATGAATGGAACCAGAGATG+AGG | + | chr1_1:5786929-5786948 | None:intergenic | 40.0% | |
| GGTGCTTCTTGGATAATGAA+TGG | + | chr1_1:5786943-5786962 | None:intergenic | 40.0% | |
| AATGTTCATGAACCTTCTCC+TGG | - | chr1_1:5787128-5787147 | Msa0003290:intron | 40.0% | |
| CTCCTGGCAATGTATTATTC+TGG | - | chr1_1:5787144-5787163 | Msa0003290:intron | 40.0% | |
| TTCCACTCAGCACAAACATA+AGG | + | chr1_1:5787361-5787380 | None:intergenic | 40.0% | |
| TTTGTGCTGAGTGGAACTTT+GGG | - | chr1_1:5787365-5787384 | Msa0003290:CDS | 40.0% | |
| TGTGTAGAGGATTTCCTGTT+TGG | - | chr1_1:5787478-5787497 | Msa0003290:intron | 40.0% | |
| GGAACATACTTCAACCAAAC+AGG | + | chr1_1:5787495-5787514 | None:intergenic | 40.0% | |
| GTTTGGTTGAAGTATGTTCC+TGG | - | chr1_1:5787495-5787514 | Msa0003290:CDS | 40.0% | |
| ! | AACTTTTAGGCTGCAATGCA+AGG | - | chr1_1:5787649-5787668 | Msa0003290:intron | 40.0% |
| ! | GAAAAGCTGTTTCAGTCACA+AGG | - | chr1_1:5787706-5787725 | Msa0003290:intron | 40.0% |
| CTTGATCTTTCACAACATGC+AGG | + | chr1_1:5787803-5787822 | None:intergenic | 40.0% | |
| TGGTCATGCATACTCAAACT+GGG | - | chr1_1:5787930-5787949 | Msa0003290:CDS | 40.0% | |
| GCAAAAATGGCTGTTGGATT+AGG | - | chr1_1:5787955-5787974 | Msa0003290:CDS | 40.0% | |
| CAATGAGTTTGGCTGAATCA+CGG | + | chr1_1:5788151-5788170 | None:intergenic | 40.0% | |
| GTCCATAGTTTAGGCTTGTA+TGG | + | chr1_1:5788289-5788308 | None:intergenic | 40.0% | |
| CAAGACTCAGTCCATAGTTT+AGG | + | chr1_1:5788298-5788317 | None:intergenic | 40.0% | |
| ! | CTAAACTATGGACTGAGTCT+TGG | - | chr1_1:5788296-5788315 | Msa0003290:CDS | 40.0% |
| ! | CTCCTTTTCCTATTCCCATT+TGG | - | chr1_1:5788415-5788434 | Msa0003290:intron | 40.0% |
| GACCAAATGGGAATAGGAAA+AGG | + | chr1_1:5788420-5788439 | None:intergenic | 40.0% | |
| CTGAAAACCTGATGACCAAA+TGG | + | chr1_1:5788433-5788452 | None:intergenic | 40.0% | |
| TACCACGGAGGAACTAATTT+CGG | - | chr1_1:5788645-5788664 | Msa0003290:CDS | 40.0% | |
| AGGAACTAATTTCGGACGAT+CGG | - | chr1_1:5788653-5788672 | Msa0003290:CDS | 40.0% | |
| ! | TCGAGTGCTTAACTGATTTC+AGG | - | chr1_1:5788794-5788813 | Msa0003290:CDS | 40.0% |
| CAAGCAATGTGAACATGCTT+TGG | - | chr1_1:5788868-5788887 | Msa0003290:CDS | 40.0% | |
| GCTCCTAATGATGTAACAGT+AGG | + | chr1_1:5788905-5788924 | None:intergenic | 40.0% | |
| !! | CTTCTAAAACACTGCGTTCA+TGG | - | chr1_1:5788962-5788981 | Msa0003290:intron | 40.0% |
| CTGAAGAGAATACATATGCC+TGG | + | chr1_1:5789009-5789028 | None:intergenic | 40.0% | |
| CAGGCATATGTATTCTCTTC+AGG | - | chr1_1:5789007-5789026 | Msa0003290:intron | 40.0% | |
| ACAATCAGGGAGGATACTTA+TGG | + | chr1_1:5789125-5789144 | None:intergenic | 40.0% | |
| TAAGTATCCTCCCTGATTGT+AGG | - | chr1_1:5789125-5789144 | Msa0003290:intron | 40.0% | |
| GTTATGGTTTCGTGAAGATG+AGG | - | chr1_1:5789251-5789270 | Msa0003290:CDS | 40.0% | |
| GGCAACATTTGGATTTGTGA+AGG | + | chr1_1:5789283-5789302 | None:intergenic | 40.0% | |
| TGAAGATGTATCTTCGCTAG+CGG | - | chr1_1:5789339-5789358 | Msa0003290:intron | 40.0% | |
| AATCACAGCTTCTAGACTTC+TGG | - | chr1_1:5789372-5789391 | Msa0003290:intron | 40.0% | |
| ACTAGAGAAAGCCAATAGCT+TGG | + | chr1_1:5789481-5789500 | None:intergenic | 40.0% | |
| TGCATAGAACTGAGAAAGCA+AGG | + | chr1_1:5789535-5789554 | None:intergenic | 40.0% | |
| CAGAATCATTTCTTCGTGGA+AGG | - | chr1_1:5789609-5789628 | Msa0003290:intron | 40.0% | |
| GCTGTCCATGTGTTTATCAA+TGG | - | chr1_1:5789668-5789687 | Msa0003290:CDS | 40.0% | |
| CGGTTAAAATTAGTTGGCGT+TGG | - | chr1_1:5789733-5789752 | Msa0003290:intron | 40.0% | |
| ! | ACAGGTCCAATTTTGCTTCA+TGG | - | chr1_1:5790155-5790174 | Msa0003290:intron | 40.0% |
| ATGGACAGAAGGATTTGACA+GGG | - | chr1_1:5790186-5790205 | Msa0003290:intron | 40.0% | |
| AGGATTTGACAGGGCAAAAA+TGG | - | chr1_1:5790195-5790214 | Msa0003290:intron | 40.0% | |
| !! | ATGAATTTGGTGTCTCCCAA+TGG | - | chr1_1:5790365-5790384 | Msa0003290:intron | 40.0% |
| TCAACAGATGAGACTCCATT+GGG | + | chr1_1:5790383-5790402 | None:intergenic | 40.0% | |
| ATCAACAGATGAGACTCCAT+TGG | + | chr1_1:5790384-5790403 | None:intergenic | 40.0% | |
| ATGGAGTCTCATCTGTTGAT+TGG | - | chr1_1:5790384-5790403 | Msa0003290:intron | 40.0% | |
| ! | TGGAGTCTCATCTGTTGATT+GGG | - | chr1_1:5790385-5790404 | Msa0003290:intron | 40.0% |
| AAAACCAGCCACAGTTGAAA+TGG | - | chr1_1:5790429-5790448 | Msa0003290:CDS | 40.0% | |
| CACAAGGTAAGAACAGTTAC+TGG | - | chr1_1:5790452-5790471 | Msa0003290:intron | 40.0% | |
| AAGGGTCAAGTATGGATCAA+TGG | - | chr1_1:5790605-5790624 | Msa0003290:CDS | 40.0% | |
| TGGATCAATGGACAAAGCAT+AGG | - | chr1_1:5790617-5790636 | Msa0003290:CDS | 40.0% | |
| TGCAATTCTTGCAACTATGC+CGG | - | chr1_1:5790671-5790690 | Msa0003290:intron | 40.0% | |
| AAGAATTAGGAGGGAATCCT+TGG | - | chr1_1:5790894-5790913 | Msa0003290:intron | 40.0% | |
| CATAGCATGATTGATACGAG+AGG | - | chr1_1:5791102-5791121 | Msa0003290:CDS | 40.0% | |
| CAGAGATGAGGATTCTCCTT+TGG | + | chr1_1:5786917-5786936 | None:intergenic | 45.0% | |
| CAAAGGAGAATCCTCATCTC+TGG | - | chr1_1:5786915-5786934 | Msa0003290:three_prime_UTR | 45.0% | |
| !! | TATACTTCAGGGGTGCTTCT+TGG | + | chr1_1:5786954-5786973 | None:intergenic | 45.0% |
| GAAATGTGTGTAGATGTGGG+AGG | - | chr1_1:5787046-5787065 | Msa0003290:CDS | 45.0% | |
| GAAAGCAAAAGATGGAGGGT+TGG | - | chr1_1:5787079-5787098 | Msa0003290:CDS | 45.0% | |
| GACCTTATGTTTGTGCTGAG+TGG | - | chr1_1:5787356-5787375 | Msa0003290:CDS | 45.0% | |
| GTTTGTGCTGAGTGGAACTT+TGG | - | chr1_1:5787364-5787383 | Msa0003290:CDS | 45.0% | |
| !! | TCTGTTCTGAAACTGATCCC+AGG | + | chr1_1:5787516-5787535 | None:intergenic | 45.0% |
| ! | AAGCTGTTTCAGTCACAAGG+TGG | - | chr1_1:5787709-5787728 | Msa0003290:intron | 45.0% |
| CTGGTCATGCATACTCAAAC+TGG | - | chr1_1:5787929-5787948 | Msa0003290:CDS | 45.0% | |
| CTCAAACTGGGCTGCAAAAA+TGG | - | chr1_1:5787942-5787961 | Msa0003290:CDS | 45.0% | |
| ! | ATGGCTGTTGGATTAGGTAC+AGG | - | chr1_1:5787961-5787980 | Msa0003290:CDS | 45.0% |
| ATTAGGTACAGGTGTCCCTT+GGG | - | chr1_1:5787972-5787991 | Msa0003290:CDS | 45.0% | |
| CTTCCTTACACATCACCCAA+GGG | + | chr1_1:5787990-5788009 | None:intergenic | 45.0% | |
| TCTTCCTTACACATCACCCA+AGG | + | chr1_1:5787991-5788010 | None:intergenic | 45.0% | |
| AATCAGGCAAGATCACGAGA+AGG | + | chr1_1:5788042-5788061 | None:intergenic | 45.0% | |
| CCTGATGACCAAATGGGAAT+AGG | + | chr1_1:5788426-5788445 | None:intergenic | 45.0% | |
| CCTATTCCCATTTGGTCATC+AGG | - | chr1_1:5788423-5788442 | Msa0003290:intron | 45.0% | |
| GCTCGTTTCATACAAAAGGG+TGG | - | chr1_1:5788506-5788525 | Msa0003290:CDS | 45.0% | |
| GACAAATGATAGTACCACGG+AGG | - | chr1_1:5788633-5788652 | Msa0003290:CDS | 45.0% | |
| ! | GTTTGCTAGAAAAGCTGCAC+AGG | + | chr1_1:5789038-5789057 | None:intergenic | 45.0% |
| AGGATACTTATGGACCAAGG+AGG | + | chr1_1:5789115-5789134 | None:intergenic | 45.0% | |
| TAGAGGGTAATCTACTGACC+TGG | + | chr1_1:5789446-5789465 | None:intergenic | 45.0% | |
| GAGGAATGCACACTAATGCT+TGG | + | chr1_1:5789641-5789660 | None:intergenic | 45.0% | |
| AGCATTAGTGTGCATTCCTC+TGG | - | chr1_1:5789641-5789660 | Msa0003290:CDS | 45.0% | |
| ! | CCTATTTCCTTTTGCAGGCT+CGG | - | chr1_1:5789902-5789921 | Msa0003290:intron | 45.0% |
| GCACTTCTTAGTGTAGCTGT+TGG | - | chr1_1:5789999-5790018 | Msa0003290:CDS | 45.0% | |
| TCATGGAAGTCAGGAATCAC+AGG | - | chr1_1:5790137-5790156 | Msa0003290:intron | 45.0% | |
| ! | TTGCTTCATGGTCTTGACCA+TGG | - | chr1_1:5790167-5790186 | Msa0003290:intron | 45.0% |
| CTGTCAAATCCTTCTGTCCA+TGG | + | chr1_1:5790187-5790206 | None:intergenic | 45.0% | |
| CATGGACAGAAGGATTTGAC+AGG | - | chr1_1:5790185-5790204 | Msa0003290:intron | 45.0% | |
| AGGGCAAAAATGGTCATACC+AGG | - | chr1_1:5790205-5790224 | Msa0003290:CDS | 45.0% | |
| ACGACGCTGATACAGAAGTT+AGG | + | chr1_1:5790246-5790265 | None:intergenic | 45.0% | |
| !! | CACAAACAGGTTGGCCTAAA+GGG | - | chr1_1:5790335-5790354 | Msa0003290:intron | 45.0% |
| !! | ACAAACAGGTTGGCCTAAAG+GGG | - | chr1_1:5790336-5790355 | Msa0003290:intron | 45.0% |
| AATTCATAGCCTCCCCCTTT+AGG | + | chr1_1:5790352-5790371 | None:intergenic | 45.0% | |
| AAAGGGGGAGGCTATGAATT+TGG | - | chr1_1:5790352-5790371 | Msa0003290:intron | 45.0% | |
| !! | ACCTTGTGCCATTTCAACTG+TGG | + | chr1_1:5790440-5790459 | None:intergenic | 45.0% |
| GTGCATTGAAATGTGCCTGA+AGG | + | chr1_1:5790541-5790560 | None:intergenic | 45.0% | |
| GCACATTTCAATGCACCTGA+TGG | - | chr1_1:5790545-5790564 | Msa0003290:intron | 45.0% | |
| ACCTGATGGAGTTGAACCAT+TGG | - | chr1_1:5790559-5790578 | Msa0003290:intron | 45.0% | |
| TGGAGTTGAACCATTGGCAT+TGG | - | chr1_1:5790565-5790584 | Msa0003290:CDS | 45.0% | |
| GCATTGGACATGAGCAGTAT+GGG | - | chr1_1:5790581-5790600 | Msa0003290:CDS | 45.0% | |
| GACATGAGCAGTATGGGAAA+GGG | - | chr1_1:5790587-5790606 | Msa0003290:CDS | 45.0% | |
| GTATGGGAAAGGGTCAAGTA+TGG | - | chr1_1:5790597-5790616 | Msa0003290:CDS | 45.0% | |
| TTTCGCCTGACGATAAGTTC+CGG | + | chr1_1:5790693-5790712 | None:intergenic | 45.0% | |
| TTTGCAGGTACCATGTTCCA+AGG | - | chr1_1:5790831-5790850 | Msa0003290:CDS | 45.0% | |
| TTAACCAGGACCTTGGAACA+TGG | + | chr1_1:5790844-5790863 | None:intergenic | 45.0% | |
| !!! | GTTGGTTTTAACCAGGACCT+TGG | + | chr1_1:5790851-5790870 | None:intergenic | 45.0% |
| GAGAATGAGTATGGCCCACA+AGG | - | chr1_1:5787889-5787908 | Msa0003290:intron | 50.0% | |
| CTCCAAGTGCTCTTCCTTGT+GGG | + | chr1_1:5787906-5787925 | None:intergenic | 50.0% | |
| TGGGCTGCAAAAATGGCTGT+TGG | - | chr1_1:5787949-5787968 | Msa0003290:CDS | 50.0% | |
| GATTAGGTACAGGTGTCCCT+TGG | - | chr1_1:5787971-5787990 | Msa0003290:CDS | 50.0% | |
| TGTCCCTTGGGTGATGTGTA+AGG | - | chr1_1:5787984-5788003 | Msa0003290:CDS | 50.0% | |
| CTAACTCACCACTGGATCTG+GGG | + | chr1_1:5788019-5788038 | None:intergenic | 50.0% | |
| GCTAACTCACCACTGGATCT+GGG | + | chr1_1:5788020-5788039 | None:intergenic | 50.0% | |
| ! | CTATGGACTGAGTCTTGGAG+TGG | - | chr1_1:5788301-5788320 | Msa0003290:CDS | 50.0% |
| GTCCGAAATTAGTTCCTCCG+TGG | + | chr1_1:5788650-5788669 | None:intergenic | 50.0% | |
| ACTAATTTCGGACGATCGGC+TGG | - | chr1_1:5788657-5788676 | Msa0003290:CDS | 50.0% | |
| GGGAGGATACTTATGGACCA+AGG | + | chr1_1:5789118-5789137 | None:intergenic | 50.0% | |
| CATCTGTCCTACAATCAGGG+AGG | + | chr1_1:5789135-5789154 | None:intergenic | 50.0% | |
| CCGAGCCTGCAAAAGGAAAT+AGG | + | chr1_1:5789905-5789924 | None:intergenic | 50.0% | |
| ! | CTTTTGCAGGCTCGGCTTTT+GGG | - | chr1_1:5789910-5789929 | Msa0003290:intron | 50.0% |
| TTCCAGCACGTAGGTCGATA+GGG | + | chr1_1:5789968-5789987 | None:intergenic | 50.0% | |
| ! | TGGTCTTGACCATGGACAGA+AGG | - | chr1_1:5790175-5790194 | Msa0003290:intron | 50.0% |
| AGGTTTGCGTGCATCATACC+TGG | + | chr1_1:5790226-5790245 | None:intergenic | 50.0% | |
| !! | GCACAAACAGGTTGGCCTAA+AGG | - | chr1_1:5790334-5790353 | Msa0003290:intron | 50.0% |
| !! | CAAACAGGTTGGCCTAAAGG+GGG | - | chr1_1:5790337-5790356 | Msa0003290:intron | 50.0% |
| !! | TGTGCCATTTCAACTGTGGC+TGG | + | chr1_1:5790436-5790455 | None:intergenic | 50.0% |
| GCCACAGTTGAAATGGCACA+AGG | - | chr1_1:5790436-5790455 | Msa0003290:CDS | 50.0% | |
| GCCAATGGTTCAACTCCATC+AGG | + | chr1_1:5790563-5790582 | None:intergenic | 50.0% | |
| CTGCTCATGTCCAATGCCAA+TGG | + | chr1_1:5790578-5790597 | None:intergenic | 50.0% | |
| ! | GGCATTGGACATGAGCAGTA+TGG | - | chr1_1:5790580-5790599 | Msa0003290:CDS | 50.0% |
| GGACATGAGCAGTATGGGAA+AGG | - | chr1_1:5790586-5790605 | Msa0003290:CDS | 50.0% | |
| CTATGCCGGAACTTATCGTC+AGG | - | chr1_1:5790685-5790704 | Msa0003290:intron | 50.0% | |
| !! | GCGAAATGCCAAGTTGGTTG+TGG | - | chr1_1:5790707-5790726 | Msa0003290:intron | 50.0% |
| TAGGCTGTCCACAACCAACT+TGG | + | chr1_1:5790718-5790737 | None:intergenic | 50.0% | |
| GTGGACAGCCTACTCAAAGA+TGG | - | chr1_1:5790726-5790745 | Msa0003290:intron | 50.0% | |
| GCTCCAAGTGCTCTTCCTTG+TGG | + | chr1_1:5787907-5787926 | None:intergenic | 55.0% | |
| !! | GGAAGAGCACTTGGAGCTTC+TGG | - | chr1_1:5787910-5787929 | Msa0003290:intron | 55.0% |
| AGATGATGCCCCAGATCCAG+TGG | - | chr1_1:5788008-5788027 | Msa0003290:CDS | 55.0% | |
| GGCTAACTCACCACTGGATC+TGG | + | chr1_1:5788021-5788040 | None:intergenic | 55.0% | |
| CGAGAAGGCTAACTCACCAC+TGG | + | chr1_1:5788027-5788046 | None:intergenic | 55.0% | |
| GGACTGAGTCTTGGAGTGGT+TGG | - | chr1_1:5788305-5788324 | Msa0003290:CDS | 55.0% | |
| AGATCCTGAACTGGTCGCTG+GGG | + | chr1_1:5788473-5788492 | None:intergenic | 55.0% | |
| GAGATCCTGAACTGGTCGCT+GGG | + | chr1_1:5788474-5788493 | None:intergenic | 55.0% | |
| AATTTCGGACGATCGGCTGG+AGG | - | chr1_1:5788660-5788679 | Msa0003290:CDS | 55.0% | |
| ! | GGCACTATGACTTGCCTCCT+TGG | - | chr1_1:5789098-5789117 | Msa0003290:CDS | 55.0% |
| CACATGGACAGCATCACCAG+AGG | + | chr1_1:5789660-5789679 | None:intergenic | 55.0% | |
| CCAAAAGCCGAGCCTGCAAA+AGG | + | chr1_1:5789912-5789931 | None:intergenic | 55.0% | |
| ! | CCTTTTGCAGGCTCGGCTTT+TGG | - | chr1_1:5789909-5789928 | Msa0003290:intron | 55.0% |
| !!! | AGGCTCGGCTTTTGGGACAA+GGG | - | chr1_1:5789917-5789936 | Msa0003290:intron | 55.0% |
| GTTCCAGCACGTAGGTCGAT+AGG | + | chr1_1:5789969-5789988 | None:intergenic | 55.0% | |
| CGTCAGGCGAAATGCCAAGT+TGG | - | chr1_1:5790701-5790720 | Msa0003290:intron | 55.0% | |
| GGTACCATGTTCCAAGGTCC+TGG | - | chr1_1:5790837-5790856 | Msa0003290:CDS | 55.0% | |
| !! | GGCCCACAAGGAAGAGCACT+TGG | - | chr1_1:5787901-5787920 | Msa0003290:intron | 60.0% |
| GATCCTGAACTGGTCGCTGG+GGG | + | chr1_1:5788472-5788491 | None:intergenic | 60.0% | |
| CGAGATCCTGAACTGGTCGC+TGG | + | chr1_1:5788475-5788494 | None:intergenic | 60.0% | |
| GCGAACGCGAGATCCTGAAC+TGG | + | chr1_1:5788482-5788501 | None:intergenic | 60.0% | |
| !!! | CAGGCTCGGCTTTTGGGACA+AGG | - | chr1_1:5789916-5789935 | Msa0003290:intron | 60.0% |
| !! | ACAGGTTGGCCTAAAGGGGG+AGG | - | chr1_1:5790340-5790359 | Msa0003290:intron | 60.0% |
| GAACCCCCAGCGACCAGTTC+AGG | - | chr1_1:5788466-5788485 | Msa0003290:intron | 65.0% | |
| GGCCCTATCGACCTACGTGC+TGG | - | chr1_1:5789963-5789982 | Msa0003290:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 5786616 | 5791334 | 5786616 | ID=Msa0003290;Name=Msa0003290 |
| chr1_1 | mRNA | 5786616 | 5791334 | 5786616 | ID=Msa0003290-mRNA-1;Parent=Msa0003290;Name=Msa0003290-mRNA-1;_AED=0.07;_eAED=0.07;_QI=179|1|1|1|0.94|0.94|18|337|745 |
| chr1_1 | exon | 5786616 | 5787112 | 5786616 | ID=Msa0003290-mRNA-1:exon:1842;Parent=Msa0003290-mRNA-1 |
| chr1_1 | exon | 5787203 | 5787405 | 5787203 | ID=Msa0003290-mRNA-1:exon:1841;Parent=Msa0003290-mRNA-1 |
| chr1_1 | exon | 5787493 | 5787606 | 5787493 | ID=Msa0003290-mRNA-1:exon:1840;Parent=Msa0003290-mRNA-1 |
| chr1_1 | exon | 5787724 | 5787834 | 5787724 | ID=Msa0003290-mRNA-1:exon:1839;Parent=Msa0003290-mRNA-1 |
| chr1_1 | exon | 5787922 | 5788031 | 5787922 | ID=Msa0003290-mRNA-1:exon:1838;Parent=Msa0003290-mRNA-1 |
| chr1_1 | exon | 5788249 | 5788358 | 5788249 | ID=Msa0003290-mRNA-1:exon:1837;Parent=Msa0003290-mRNA-1 |
| chr1_1 | exon | 5788504 | 5788682 | 5788504 | ID=Msa0003290-mRNA-1:exon:1836;Parent=Msa0003290-mRNA-1 |
| chr1_1 | exon | 5788779 | 5788940 | 5788779 | ID=Msa0003290-mRNA-1:exon:1835;Parent=Msa0003290-mRNA-1 |
| chr1_1 | exon | 5789016 | 5789134 | 5789016 | ID=Msa0003290-mRNA-1:exon:1834;Parent=Msa0003290-mRNA-1 |
| chr1_1 | exon | 5789218 | 5789305 | 5789218 | ID=Msa0003290-mRNA-1:exon:1833;Parent=Msa0003290-mRNA-1 |
| chr1_1 | exon | 5789400 | 5789505 | 5789400 | ID=Msa0003290-mRNA-1:exon:1832;Parent=Msa0003290-mRNA-1 |
| chr1_1 | exon | 5789624 | 5789712 | 5789624 | ID=Msa0003290-mRNA-1:exon:1831;Parent=Msa0003290-mRNA-1 |
| chr1_1 | exon | 5789921 | 5790064 | 5789921 | ID=Msa0003290-mRNA-1:exon:1830;Parent=Msa0003290-mRNA-1 |
| chr1_1 | exon | 5790200 | 5790292 | 5790200 | ID=Msa0003290-mRNA-1:exon:1829;Parent=Msa0003290-mRNA-1 |
| chr1_1 | exon | 5790399 | 5790465 | 5790399 | ID=Msa0003290-mRNA-1:exon:1828;Parent=Msa0003290-mRNA-1 |
| chr1_1 | exon | 5790564 | 5790676 | 5790564 | ID=Msa0003290-mRNA-1:exon:1827;Parent=Msa0003290-mRNA-1 |
| chr1_1 | exon | 5790796 | 5790891 | 5790796 | ID=Msa0003290-mRNA-1:exon:1826;Parent=Msa0003290-mRNA-1 |
| chr1_1 | exon | 5790982 | 5791334 | 5790982 | ID=Msa0003290-mRNA-1:exon:1825;Parent=Msa0003290-mRNA-1 |
| chr1_1 | five_prime_UTR | 5791156 | 5791334 | 5791156 | ID=Msa0003290-mRNA-1:five_prime_utr;Parent=Msa0003290-mRNA-1 |
| chr1_1 | CDS | 5790982 | 5791155 | 5790982 | ID=Msa0003290-mRNA-1:cds;Parent=Msa0003290-mRNA-1 |
| chr1_1 | CDS | 5790796 | 5790891 | 5790796 | ID=Msa0003290-mRNA-1:cds;Parent=Msa0003290-mRNA-1 |
| chr1_1 | CDS | 5790564 | 5790676 | 5790564 | ID=Msa0003290-mRNA-1:cds;Parent=Msa0003290-mRNA-1 |
| chr1_1 | CDS | 5790399 | 5790465 | 5790399 | ID=Msa0003290-mRNA-1:cds;Parent=Msa0003290-mRNA-1 |
| chr1_1 | CDS | 5790200 | 5790292 | 5790200 | ID=Msa0003290-mRNA-1:cds;Parent=Msa0003290-mRNA-1 |
| chr1_1 | CDS | 5789921 | 5790064 | 5789921 | ID=Msa0003290-mRNA-1:cds;Parent=Msa0003290-mRNA-1 |
| chr1_1 | CDS | 5789624 | 5789712 | 5789624 | ID=Msa0003290-mRNA-1:cds;Parent=Msa0003290-mRNA-1 |
| chr1_1 | CDS | 5789400 | 5789505 | 5789400 | ID=Msa0003290-mRNA-1:cds;Parent=Msa0003290-mRNA-1 |
| chr1_1 | CDS | 5789218 | 5789305 | 5789218 | ID=Msa0003290-mRNA-1:cds;Parent=Msa0003290-mRNA-1 |
| chr1_1 | CDS | 5789016 | 5789134 | 5789016 | ID=Msa0003290-mRNA-1:cds;Parent=Msa0003290-mRNA-1 |
| chr1_1 | CDS | 5788779 | 5788940 | 5788779 | ID=Msa0003290-mRNA-1:cds;Parent=Msa0003290-mRNA-1 |
| chr1_1 | CDS | 5788504 | 5788682 | 5788504 | ID=Msa0003290-mRNA-1:cds;Parent=Msa0003290-mRNA-1 |
| chr1_1 | CDS | 5788249 | 5788358 | 5788249 | ID=Msa0003290-mRNA-1:cds;Parent=Msa0003290-mRNA-1 |
| chr1_1 | CDS | 5787922 | 5788031 | 5787922 | ID=Msa0003290-mRNA-1:cds;Parent=Msa0003290-mRNA-1 |
| chr1_1 | CDS | 5787724 | 5787834 | 5787724 | ID=Msa0003290-mRNA-1:cds;Parent=Msa0003290-mRNA-1 |
| chr1_1 | CDS | 5787493 | 5787606 | 5787493 | ID=Msa0003290-mRNA-1:cds;Parent=Msa0003290-mRNA-1 |
| chr1_1 | CDS | 5787203 | 5787405 | 5787203 | ID=Msa0003290-mRNA-1:cds;Parent=Msa0003290-mRNA-1 |
| chr1_1 | CDS | 5786953 | 5787112 | 5786953 | ID=Msa0003290-mRNA-1:cds;Parent=Msa0003290-mRNA-1 |
| chr1_1 | three_prime_UTR | 5786616 | 5786952 | 5786616 | ID=Msa0003290-mRNA-1:three_prime_utr;Parent=Msa0003290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
