AlfalfaGEDB | Msa0621730

M. sativa cultivar zhongmu-4 / Msa0621730

KEGG: -
GO: -
PFAM: PF02469.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0621730	XP_003596932.1	91.384	383	17	4	26	396	25	403	0.0	646

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0621730	sp\|Q8RWC5\|FLA16_ARATH	69.415	376	96	5	29	388	33	405	1.39e-163	471

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0621730	G7IRI1	91.384	383	17	4	26	396	25	403	0.0	646

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003290	Msa0621730	0.817774	2.769228e-52	-8.615850e-47
Msa0039790	Msa0621730	0.813896	2.029555e-51	-8.615850e-47
Msa0050740	Msa0621730	0.812536	4.035576e-51	-8.615850e-47
Msa0050750	Msa0621730	0.843193	1.628845e-58	-8.615850e-47
Msa0054880	Msa0621730	0.836528	8.877486e-57	-8.615850e-47
Msa0095900	Msa0621730	0.828882	7.022503e-55	-8.615850e-47
Msa0180930	Msa0621730	0.809380	1.946721e-50	-8.615850e-47
Msa0222560	Msa0621730	0.830137	3.479354e-55	-8.615850e-47
Msa0298500	Msa0621730	0.870392	1.510390e-66	-8.615850e-47
Msa0301820	Msa0621730	0.827267	1.719607e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0621730	MtrunA17_Chr2g0322251	91.384	383	17	4	26	396	25	403	0.0	646
Msa0621730	MtrunA17_Chr4g0025311	72.396	384	87	5	27	392	39	421	3.69e-172	490
Msa0621730	MtrunA17_Chr7g0267811	68.462	390	100	8	27	396	29	415	6.30e-160	459

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0621730	AT2G35860.1	69.415	376	96	5	29	388	33	405	1.41e-164	471
Msa0621730	AT5G06390.1	63.902	410	118	6	6	388	10	416	6.12e-163	467
Msa0621730	AT3G11700.1	65.122	410	111	8	7	385	8	416	2.51e-161	463
Msa0621730	AT3G52370.2	63.915	424	124	8	15	416	67	483	5.54e-161	463
Msa0621730	AT3G52370.1	63.915	424	124	8	15	416	14	430	7.19e-161	461
Msa0621730	AT5G05650.1	54.217	83	32	1	309	385	5	87	4.81e-24	97.1

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Find 166 sgRNAs with CRISPR-Local

Find 265 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCACACCCATAATAGC+TGG	0.538570	4_2:-73976599	None:intergenic
AAACACTTTCTTCTCCAACC+CGG	0.635314	4_2:+73974018	Msa0621730:CDS
AAACCTAACGTCGTTAGCGA+CGG	0.600354	4_2:+73974572	Msa0621730:CDS
AAATAAATAATTGCCTAGCC+AGG	0.537622	4_2:-73976936	None:intergenic
AAATCATCCACGACGGCGCG+TGG	0.503906	4_2:-73974258	None:intergenic
AACTACTGGAAACAGCATGC+TGG	0.545401	4_2:+73976243	Msa0621730:CDS
AAGACATTACTGCATTACGG+TGG	0.719316	4_2:+73974522	Msa0621730:CDS
AAGTGAACCGGGTTCACCGG+AGG	0.679744	4_2:+73974683	Msa0621730:CDS
AAGTGATGGTGTGGTCCTCC+TGG	0.454718	4_2:-73974468	None:intergenic
AATACCATGTATAACACCGT+CGG	0.614262	4_2:-73974220	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGAAGATGAAGAAGAAAGAA+TGG	-	chr4_2:73973809-73973828	None:intergenic	30.0%
ATCAAGACATTACTGCATTA+CGG	+	chr4_2:73974519-73974538	Msa0621730:CDS	30.0%
TTTGATACTCAGGGATAATA+TGG	-	chr4_2:73974722-73974741	None:intergenic	30.0%
TATTATCCCTGAGTATCAAA+CGG	+	chr4_2:73974722-73974741	Msa0621730:CDS	30.0%
AGAGTATGTATAATGCTGTT+AGG	+	chr4_2:73974748-73974767	Msa0621730:intron	30.0%
TATAATGCTGTTAGGAGATT+TGG	+	chr4_2:73974756-73974775	Msa0621730:intron	30.0%
ATAATGCTGTTAGGAGATTT+GGG	+	chr4_2:73974757-73974776	Msa0621730:intron	30.0%
TTAAATTTGGAGATGGTGAT+GGG	+	chr4_2:73974844-73974863	Msa0621730:CDS	30.0%
GTTTGATCCGGATATTTATA+CGG	+	chr4_2:73974878-73974897	Msa0621730:CDS	30.0%
AAAACAAACAAACCAGAACA+AGG	-	chr4_2:73975360-73975379	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	73973757	73976952	73973757	ID=Msa0621730;Name=Msa0621730
chr4_2	mRNA	73973757	73976952	73973757	ID=Msa0621730-mRNA-1;Parent=Msa0621730;Name=Msa0621730-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0\|0\|0.25\|1\|0.33\|0.25\|4\|587\|437
chr4_2	exon	73973757	73973997	73973757	ID=Msa0621730-mRNA-1:exon:22214;Parent=Msa0621730-mRNA-1
chr4_2	exon	73974013	73974764	73974013	ID=Msa0621730-mRNA-1:exon:22215;Parent=Msa0621730-mRNA-1
chr4_2	exon	73974783	73974977	73974783	ID=Msa0621730-mRNA-1:exon:22216;Parent=Msa0621730-mRNA-1
chr4_2	exon	73976240	73976952	73976240	ID=Msa0621730-mRNA-1:exon:22217;Parent=Msa0621730-mRNA-1
chr4_2	CDS	73973757	73973997	73973757	ID=Msa0621730-mRNA-1:cds;Parent=Msa0621730-mRNA-1
chr4_2	CDS	73974013	73974764	73974013	ID=Msa0621730-mRNA-1:cds;Parent=Msa0621730-mRNA-1
chr4_2	CDS	73974783	73974977	73974783	ID=Msa0621730-mRNA-1:cds;Parent=Msa0621730-mRNA-1
chr4_2	CDS	73976240	73976365	73976240	ID=Msa0621730-mRNA-1:cds;Parent=Msa0621730-mRNA-1
chr4_2	three_prime_UTR	73976366	73976952	73976366	ID=Msa0621730-mRNA-1:three_prime_utr;Parent=Msa0621730-mRNA-1

Gene Sequence

>Msa0621730

ATGGCTCACCACATCTCTTGCATTCTTCTTCTTCTTCTTTTCTCTCTATCCATTCTTTCTTCTTCATCTTCATCACCAACGAGTCAGATAAACTCAAACTCAATCCTAATAGCACTACTCGACTCACATTACACTGAACTCACCTACCTAATCGAAAAAGCAAACCTCTTACAAACACTAGAAAACACTGTCTCAAAACACAACATTACAATCTTTGCACCAAACAACGTAGCCCTCGAACATTTCAAACACTTTCTTCTCCAACCCGGTAACATTCTTTCCCTCCAAACCCTCCTCCTTTCCCACGTCATTCCAACCCGAATTCATTCCGGGTCAACCCTTTTCAAATCCATCTCCGACCATCACCTCCACCTTGAAACAGATGTCACCACTGGAGAATTCACCGTTAACCAAGAGAAAGTAACCCACCCGAATGACATTACCCGACCCGACGGTGTTATACATGGTATTCAGAAAATTCTTATCCCACGCGCCGTCGTGGATGATTTCAACAACCGTCGTAGTCTCAGTTCAATCACCGCTGTTAAACCAGAAGGAGCACCAGAAGCTGACACTAGAAAATTGAAAAAATTAAAAAAATCTTCACCACCGGAAAAACCAGGTTCACCACCGGAGATTCCGATTTACGAAGCTTTAGCTCCGGGACCATCACTAGCTCCGGCACCGGCGCCGGGACCAGGAGGACCACACCATCACTTCAACGGAGAGTTACAAGTGAAGGATTTCATCAAGACATTACTGCATTACGGTGGTTACAACGAAATGGCGGATATACTCGTAAACCTAACGTCGTTAGCGACGGAGATGAGTCGTTTAGTTTCGGAGGGTTATGTTTTAACGGTTTTGGCGCCGAATGACGAAGCAATGGCGAAGTTAACGACGGAGGAGTTAAGTGAACCGGGTTCACCGGAGGAGATAATGTATTACCATATTATCCCTGAGTATCAAACGGAAGAGAGTATGTATAATGCTGTTAGTTATGAGACTTTGAGGTTGAAGTATAAGGTTGTGGCTCAGGAAGCTGATGGGTCGGTTAAATTTGGAGATGGTGATGGGTCGGGTTATTTGTTTGATCCGGATATTTATACGGATGGGAGGATTTCTGTTCAGGGGATTGATGGGGTTTTGTTTCCTGTGAAGGAGAATGAAGATGTGCCGGTGGAGCGGGGAAACTACTGGAAACAGCATGCTGGATGCTTGGAACCTTTAGTAACCATTCTAGATTCACCTCTTGTCAATGAAAAACCCCACGTTTTTTTATGGCTAGCAAAGTTCCTTAAAACAAGGTATTGA

Protein sequence

>Msa0621730

MAHHISCILLLLLFSLSILSSSSSSPTSQINSNSILIALLDSHYTELTYLIEKANLLQTLENTVSKHNITIFAPNNVALEHFKHFLLQPGNILSLQTLLLSHVIPTRIHSGSTLFKSISDHHLHLETDVTTGEFTVNQEKVTHPNDITRPDGVIHGIQKILIPRAVVDDFNNRRSLSSITAVKPEGAPEADTRKLKKLKKSSPPEKPGSPPEIPIYEALAPGPSLAPAPAPGPGGPHHHFNGELQVKDFIKTLLHYGGYNEMADILVNLTSLATEMSRLVSEGYVLTVLAPNDEAMAKLTTEELSEPGSPEEIMYYHIIPEYQTEESMYNAVSYETLRLKYKVVAQEADGSVKFGDGDGSGYLFDPDIYTDGRISVQGIDGVLFPVKENEDVPVERGNYWKQHAGCLEPLVTILDSPLVNEKPHVFLWLAKFLKTRY*