Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0005040 | XP_003589027.1 | 98.476 | 328 | 5 | 0 | 4 | 331 | 22 | 349 | 0.0 | 672 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0005040 | sp|Q9ASU8|NDL2_ARATH | 78.769 | 325 | 68 | 1 | 4 | 328 | 20 | 343 | 0.0 | 531 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0005040 | G7IB94 | 98.476 | 328 | 5 | 0 | 4 | 331 | 22 | 349 | 0.0 | 672 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005040 | Msa0053100 | 0.966369 | 7.900176e-126 | -8.615850e-47 |
| Msa0005040 | Msa0098430 | 0.887005 | 2.085661e-72 | -8.615850e-47 |
| Msa0005040 | Msa0747770 | 0.991378 | 2.486458e-187 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0005040 | MtrunA17_Chr1g0151691 | 98.777 | 327 | 4 | 0 | 5 | 331 | 2 | 328 | 0.0 | 671 |
| Msa0005040 | MtrunA17_Chr8g0389281 | 78.963 | 328 | 69 | 0 | 4 | 331 | 20 | 347 | 0.0 | 545 |
| Msa0005040 | MtrunA17_Chr1g0190891 | 65.569 | 334 | 108 | 1 | 4 | 330 | 20 | 353 | 9.91e-166 | 465 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0005040 | AT5G11790.1 | 78.769 | 325 | 68 | 1 | 4 | 328 | 20 | 343 | 0.0 | 531 |
| Msa0005040 | AT5G56750.1 | 76.994 | 326 | 75 | 0 | 4 | 329 | 20 | 345 | 0.0 | 528 |
| Msa0005040 | AT5G56750.2 | 77.231 | 325 | 74 | 0 | 5 | 329 | 2 | 326 | 0.0 | 528 |
| Msa0005040 | AT2G19620.1 | 73.148 | 324 | 87 | 0 | 4 | 327 | 20 | 343 | 0.0 | 509 |
| Msa0005040 | AT2G19620.2 | 73.375 | 323 | 86 | 0 | 5 | 327 | 2 | 324 | 0.0 | 508 |
| Msa0005040 | AT5G11790.2 | 80.556 | 288 | 55 | 1 | 41 | 328 | 3 | 289 | 1.35e-172 | 481 |
| Msa0005040 | AT2G19620.3 | 72.664 | 289 | 79 | 0 | 39 | 327 | 1 | 289 | 1.49e-159 | 447 |
Find 106 sgRNAs with CRISPR-Local
Find 261 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAGTAATTCTAGTCTTTAT+AGG | 0.167495 | 1_1:-7486839 | None:intergenic |
| ATCAGACGTCTCCTGCTTTC+AGG | 0.185516 | 1_1:+7484050 | Msa0005040:intron |
| AATGGGAAATATGATGAAAT+AGG | 0.223204 | 1_1:+7486956 | Msa0005040:three_prime_UTR |
| TCTTGGGCTGACACTGTTCC+TGG | 0.235018 | 1_1:-7486747 | None:intergenic |
| TCTTATCACCTATCCTGATT+TGG | 0.248488 | 1_1:+7483613 | Msa0005040:CDS |
| CGGTTCCTTGAAGCTATTAA+TGG | 0.259213 | 1_1:+7486088 | Msa0005040:CDS |
| CTTATCACCTATCCTGATTT+GGG | 0.262260 | 1_1:+7483614 | Msa0005040:CDS |
| TGCCGTATGGTTGTAGATAA+TGG | 0.280783 | 1_1:+7486982 | Msa0005040:three_prime_UTR |
| TCGCGGTGGTACTCAATTTC+CGG | 0.287965 | 1_1:+7485090 | Msa0005040:CDS |
| CCTATAAAGACTAGAATTAC+TGG | 0.294839 | 1_1:+7486839 | Msa0005040:CDS |
| AAATATCGACAACGTGTTCT+TGG | 0.298043 | 1_1:+7484767 | Msa0005040:CDS |
| TCTGTCTCTGTTGCTGTGTA+TGG | 0.298337 | 1_1:+7483572 | Msa0005040:CDS |
| GATGGACTCAAGGGACTTCT+TGG | 0.315273 | 1_1:-7486764 | None:intergenic |
| ATGAAAACTTACAGCAAATA+AGG | 0.336620 | 1_1:-7484670 | None:intergenic |
| GAAATAAGAAATCAACAAAA+AGG | 0.341696 | 1_1:+7487013 | Msa0005040:three_prime_UTR |
| TGTCTAACTTTGTAGTGATA+TGG | 0.350373 | 1_1:-7486494 | None:intergenic |
| AGCAGCAAGTAATATGCTTC+TGG | 0.352622 | 1_1:-7484087 | None:intergenic |
| CTGTCTCTGTTGCTGTGTAT+GGG | 0.372972 | 1_1:+7483573 | Msa0005040:CDS |
| CTCAATCCTTCACTTAGGTC+AGG | 0.378178 | 1_1:-7486408 | None:intergenic |
| TTACAATTTAAACCCAAATC+AGG | 0.381571 | 1_1:-7483626 | None:intergenic |
| TCAGACGTCTCCTGCTTTCA+GGG | 0.390147 | 1_1:+7484051 | Msa0005040:intron |
| ACAGATAGAACAGGATAATC+TGG | 0.390788 | 1_1:-7484298 | None:intergenic |
| GTTGTAGATAATGGGATATA+AGG | 0.397529 | 1_1:+7486991 | Msa0005040:three_prime_UTR |
| ATGGGAAATATGATGAAATA+GGG | 0.398319 | 1_1:+7486957 | Msa0005040:three_prime_UTR |
| GAGTACTTTCTCATGGGATA+TGG | 0.412981 | 1_1:+7486710 | Msa0005040:CDS |
| GCCGTATGGTTGTAGATAAT+GGG | 0.419726 | 1_1:+7486983 | Msa0005040:three_prime_UTR |
| TGGAGTGCCTCTGAGTGATA+TGG | 0.433217 | 1_1:-7486474 | None:intergenic |
| TCTTAATGCAGTTATGTGTA+TGG | 0.436829 | 1_1:+7484620 | Msa0005040:CDS |
| GTTTCGTAAACAGATCTTAC+GGG | 0.440120 | 1_1:-7486911 | None:intergenic |
| TGGCATGTGTGGGGTGGTAA+AGG | 0.440330 | 1_1:+7484955 | Msa0005040:CDS |
| GGTTCCTTGAAGCTATTAAT+GGG | 0.446324 | 1_1:+7486089 | Msa0005040:CDS |
| GATTGAGAAACCTACATTGC+CGG | 0.456707 | 1_1:+7486424 | Msa0005040:CDS |
| CATACCCATTAATAGCTTCA+AGG | 0.466016 | 1_1:-7486093 | None:intergenic |
| TGTTTCGTAAACAGATCTTA+CGG | 0.475222 | 1_1:-7486912 | None:intergenic |
| CTCTATGTAAAGAACCATCT+TGG | 0.476906 | 1_1:+7484807 | Msa0005040:CDS |
| CAATTTCAAACCCATACTCT+CGG | 0.479414 | 1_1:-7486813 | None:intergenic |
| GGTTTCTCAATCCTTCACTT+AGG | 0.485709 | 1_1:-7486413 | None:intergenic |
| TGCTACTGATATGTATCTGC+AGG | 0.492091 | 1_1:+7483523 | Msa0005040:exon |
| TGTTGCTGTGTATGGGGACC+AGG | 0.494219 | 1_1:+7483580 | Msa0005040:CDS |
| AAATTAGTGACCGGCAATGT+AGG | 0.494981 | 1_1:-7486434 | None:intergenic |
| ATGGTCTGTACAGGCCATCC+AGG | 0.496740 | 1_1:+7486729 | Msa0005040:CDS |
| TGATAAGAGCTGGTTTGTCC+TGG | 0.497015 | 1_1:-7483598 | None:intergenic |
| GGTTCAAGCATGCGGGTCAA+TGG | 0.498997 | 1_1:+7486649 | Msa0005040:intron |
| ATGGACTCAAGGGACTTCTT+GGG | 0.500002 | 1_1:-7486763 | None:intergenic |
| CTATAAAGACTAGAATTACT+GGG | 0.502276 | 1_1:+7486840 | Msa0005040:CDS |
| AAGTCATCTACAGATAGAAC+AGG | 0.502528 | 1_1:-7484307 | None:intergenic |
| GGGCTGACACTGTTCCTGGA+TGG | 0.506295 | 1_1:-7486743 | None:intergenic |
| CTATTTACATACCTCAACTA+AGG | 0.516795 | 1_1:-7486529 | None:intergenic |
| TGTGTATGGGAGTAACTGCT+GGG | 0.517895 | 1_1:+7484634 | Msa0005040:CDS |
| ACCAATGGAGTACTTTCTCA+TGG | 0.518496 | 1_1:+7486703 | Msa0005040:CDS |
| TCATGGGATATGGTCTGTAC+AGG | 0.520593 | 1_1:+7486720 | Msa0005040:CDS |
| CCATGCCATGTTAATACCAA+TGG | 0.521144 | 1_1:+7486688 | Msa0005040:CDS |
| CATTGGTATTAACATGGCAT+GGG | 0.528281 | 1_1:-7486687 | None:intergenic |
| CAAGATGGTTCTTTACATAG+AGG | 0.528987 | 1_1:-7484806 | None:intergenic |
| ATGTGTATGGGAGTAACTGC+TGG | 0.530635 | 1_1:+7484633 | Msa0005040:CDS |
| AATTTCAAACCCATACTCTC+GGG | 0.533634 | 1_1:-7486812 | None:intergenic |
| CCATTGGTATTAACATGGCA+TGG | 0.534695 | 1_1:-7486688 | None:intergenic |
| TATTACAGTCTTTGGATGAG+AGG | 0.535492 | 1_1:+7486047 | Msa0005040:intron |
| AAATAATAACCCCTGAAAGC+AGG | 0.537854 | 1_1:-7484061 | None:intergenic |
| CTTAATGCAGTTATGTGTAT+GGG | 0.543450 | 1_1:+7484621 | Msa0005040:CDS |
| TGTCTCTGTTGCTGTGTATG+GGG | 0.548337 | 1_1:+7483574 | Msa0005040:CDS |
| GATGAATAATGATGGTTGGT+TGG | 0.550240 | 1_1:+7486877 | Msa0005040:three_prime_UTR |
| TCAGGATAGGTGATAAGAGC+TGG | 0.553536 | 1_1:-7483608 | None:intergenic |
| AGCTCAGGAGAAATACAAGA+TGG | 0.560956 | 1_1:-7486782 | None:intergenic |
| CATTAGTCCACCTGGGCATG+AGG | 0.562740 | 1_1:+7484131 | Msa0005040:CDS |
| TTGTGGTGATAGGAAATTCG+CGG | 0.562990 | 1_1:+7485073 | Msa0005040:intron |
| CCCATGAGAAAGTACTCCAT+TGG | 0.566374 | 1_1:-7486704 | None:intergenic |
| TCTATCTGTAGATGACTTAG+CGG | 0.567432 | 1_1:+7484312 | Msa0005040:CDS |
| ATATATCACATTAGTCCACC+TGG | 0.572606 | 1_1:+7484123 | Msa0005040:CDS |
| AGAAATACAAGATGGACTCA+AGG | 0.575493 | 1_1:-7486774 | None:intergenic |
| ACGATTCAGTGCCTTAGTTG+AGG | 0.579061 | 1_1:+7486518 | Msa0005040:CDS |
| TAAAGGAAATATTGCTGAAG+CGG | 0.583967 | 1_1:+7484972 | Msa0005040:CDS |
| AATTACAGGTTCAAGCATGC+GGG | 0.584432 | 1_1:+7486642 | Msa0005040:intron |
| TCCCATTATCTACAACCATA+CGG | 0.588077 | 1_1:-7486984 | None:intergenic |
| GTCTGAGTGGTTGTACAACA+AGG | 0.588354 | 1_1:+7484829 | Msa0005040:CDS |
| ATTTAAACCCAAATCAGGAT+AGG | 0.588603 | 1_1:-7483621 | None:intergenic |
| TAATTACAGGTTCAAGCATG+CGG | 0.591579 | 1_1:+7486641 | Msa0005040:intron |
| CCAATGGAGTACTTTCTCAT+GGG | 0.603018 | 1_1:+7486704 | Msa0005040:CDS |
| AAGCTACAGACCTCATGCCC+AGG | 0.603979 | 1_1:-7484141 | None:intergenic |
| CAGACGTCTCCTGCTTTCAG+GGG | 0.604861 | 1_1:+7484052 | Msa0005040:intron |
| ATGAAATAGGGAGTGCCGTA+TGG | 0.610934 | 1_1:+7486969 | Msa0005040:three_prime_UTR |
| CATATTATCAGAACATGTCA+TGG | 0.611620 | 1_1:+7483548 | Msa0005040:CDS |
| TAGAAGTAGATGAATAATGA+TGG | 0.612606 | 1_1:+7486869 | Msa0005040:exon |
| ATATAGTCAAAGCATGCCGA+AGG | 0.612760 | 1_1:+7485119 | Msa0005040:CDS |
| GTACAATTGTAAAGCAAACA+TGG | 0.617571 | 1_1:+7487183 | Msa0005040:three_prime_UTR |
| AGTAGATGAATAATGATGGT+TGG | 0.627590 | 1_1:+7486873 | Msa0005040:three_prime_UTR |
| GAAATACAAGATGGACTCAA+GGG | 0.627901 | 1_1:-7486773 | None:intergenic |
| GCTTTGACTATATCTGACTC+CGG | 0.640759 | 1_1:-7485109 | None:intergenic |
| AGGAGACCTGACCTAAGTGA+AGG | 0.640781 | 1_1:+7486402 | Msa0005040:intron |
| TACAACCACTCAGACCAAGA+TGG | 0.652299 | 1_1:-7484821 | None:intergenic |
| AGAGGCAAAGCTTGAATGTG+TGG | 0.655732 | 1_1:+7486065 | Msa0005040:CDS |
| CTACAGACCTCATGCCCAGG+TGG | 0.662824 | 1_1:-7484138 | None:intergenic |
| ATTGGTATTAACATGGCATG+GGG | 0.665921 | 1_1:-7486686 | None:intergenic |
| GGCAAAGCTTGAATGTGTGG+CGG | 0.666001 | 1_1:+7486068 | Msa0005040:CDS |
| TATATCACATTAGTCCACCT+GGG | 0.675970 | 1_1:+7484124 | Msa0005040:CDS |
| GTACTCCATTGGTATTAACA+TGG | 0.679020 | 1_1:-7486693 | None:intergenic |
| ATGCGGGTCAATGGTAACAG+AGG | 0.682086 | 1_1:+7486658 | Msa0005040:CDS |
| GTGTATGGGAGTAACTGCTG+GGG | 0.683228 | 1_1:+7484635 | Msa0005040:CDS |
| TATAGTCAAAGCATGCCGAA+GGG | 0.685136 | 1_1:+7485120 | Msa0005040:CDS |
| TATAAAGACTAGAATTACTG+GGG | 0.686762 | 1_1:+7486841 | Msa0005040:CDS |
| TTTCGTAAACAGATCTTACG+GGG | 0.688716 | 1_1:-7486910 | None:intergenic |
| TGGTGATAGGAAATTCGCGG+TGG | 0.707804 | 1_1:+7485076 | Msa0005040:intron |
| CTTAGCGGATCAAATAGCTG+AGG | 0.709294 | 1_1:+7484327 | Msa0005040:CDS |
| AAGAACCATCTTGGTCTGAG+TGG | 0.713563 | 1_1:+7484816 | Msa0005040:CDS |
| TATGTCTCCATATCACTCAG+AGG | 0.729931 | 1_1:+7486467 | Msa0005040:CDS |
| CAATTGTAAAGCAAACATGG+AGG | 0.793931 | 1_1:+7487186 | Msa0005040:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTATTTTATTTTGCTAA+AGG | + | chr1_1:7487151-7487170 | Msa0005040:three_prime_UTR | 10.0% |
| !!! | AGAAAAGAAATATTTTAATG+AGG | - | chr1_1:7483867-7483886 | None:intergenic | 15.0% |
| !!! | TTCTTTGTATAAAACATTTT+AGG | - | chr1_1:7483909-7483928 | None:intergenic | 15.0% |
| !! | TAAGTAAATTAAAGTCATTT+GGG | - | chr1_1:7484717-7484736 | None:intergenic | 15.0% |
| !! | TTAAGTAAATTAAAGTCATT+TGG | - | chr1_1:7484718-7484737 | None:intergenic | 15.0% |
| !!! | AACATATTTTATTTTCATGT+AGG | + | chr1_1:7485149-7485168 | Msa0005040:intron | 15.0% |
| !!! | ACATATTTTATTTTCATGTA+GGG | + | chr1_1:7485150-7485169 | Msa0005040:intron | 15.0% |
| !! | ATGCCTTTATATTAAATAAT+TGG | + | chr1_1:7485494-7485513 | Msa0005040:intron | 15.0% |
| !! | TTGCCAATTATTTAATATAA+AGG | - | chr1_1:7485500-7485519 | None:intergenic | 15.0% |
| !!! | TAATTAATTTTTGACAATGT+TGG | - | chr1_1:7485751-7485770 | None:intergenic | 15.0% |
| !!! | TTTTTAATTCAAATATCTCT+AGG | + | chr1_1:7485802-7485821 | Msa0005040:intron | 15.0% |
| !! | ACTTAAATTCAATATGTTTA+GGG | + | chr1_1:7486310-7486329 | Msa0005040:intron | 15.0% |
| !! | ATCACAAAGTTAAATAAAAA+TGG | - | chr1_1:7486372-7486391 | None:intergenic | 15.0% |
| !!! | ATTTTTATTTAACTTTGTGA+TGG | + | chr1_1:7486371-7486390 | Msa0005040:intron | 15.0% |
| !!! | AAAATAATGGAAAAAGTCAA+GGG | - | chr1_1:7483681-7483700 | None:intergenic | 20.0% |
| !!! | AAAAATAATGGAAAAAGTCA+AGG | - | chr1_1:7483682-7483701 | None:intergenic | 20.0% |
| !!! | AGTCTAATTTTTTCTTTTCA+TGG | + | chr1_1:7484009-7484028 | Msa0005040:intron | 20.0% |
| !! | TATAGATATTCATAACAGTA+AGG | - | chr1_1:7484192-7484211 | None:intergenic | 20.0% |
| !!! | TCAAATTTACTGTACTTTTA+TGG | + | chr1_1:7484935-7484954 | Msa0005040:CDS | 20.0% |
| !! | ACAAATAAAAGTAAATGACT+CGG | - | chr1_1:7485057-7485076 | None:intergenic | 20.0% |
| !!! | ATTGATATTTTTGGACATTA+TGG | + | chr1_1:7485326-7485345 | Msa0005040:intron | 20.0% |
| !! | CATCTAATAAGGAAAAAATT+GGG | - | chr1_1:7485442-7485461 | None:intergenic | 20.0% |
| !! | TCATCTAATAAGGAAAAAAT+TGG | - | chr1_1:7485443-7485462 | None:intergenic | 20.0% |
| !!! | TTTCAACTCATTTTACAATT+AGG | + | chr1_1:7485851-7485870 | Msa0005040:intron | 20.0% |
| !! | TAATAAATATATCAAGAGTC+AGG | - | chr1_1:7486032-7486051 | None:intergenic | 20.0% |
| !! | GATATATTTATTACAGTCTT+TGG | + | chr1_1:7486039-7486058 | Msa0005040:intron | 20.0% |
| !!! | TGATTTTCATTTTCTTTTTG+AGG | + | chr1_1:7486136-7486155 | Msa0005040:intron | 20.0% |
| !!! | GATTTTCATTTTCTTTTTGA+GGG | + | chr1_1:7486137-7486156 | Msa0005040:intron | 20.0% |
| !! | CACTTAAATTCAATATGTTT+AGG | + | chr1_1:7486309-7486328 | Msa0005040:intron | 20.0% |
| !!! | TCATTTTTCTATGATTAGAA+TGG | + | chr1_1:7486938-7486957 | Msa0005040:three_prime_UTR | 20.0% |
| !!! | CATTTTTCTATGATTAGAAT+GGG | + | chr1_1:7486939-7486958 | Msa0005040:three_prime_UTR | 20.0% |
| !! | GAAATAAGAAATCAACAAAA+AGG | + | chr1_1:7487013-7487032 | Msa0005040:three_prime_UTR | 20.0% |
| !!! | TCACAGTCTATATATTTTAT+TGG | + | chr1_1:7487265-7487284 | Msa0005040:three_prime_UTR | 20.0% |
| ! | TTACAATTTAAACCCAAATC+AGG | - | chr1_1:7483629-7483648 | None:intergenic | 25.0% |
| ! | GGTTTAAATTGTAAGTAAAC+TGG | + | chr1_1:7483635-7483654 | Msa0005040:intron | 25.0% |
| !!! | TTCCATTATTTTTGTACTAC+AGG | + | chr1_1:7483689-7483708 | Msa0005040:intron | 25.0% |
| !!! | TCCATTATTTTTGTACTACA+GGG | + | chr1_1:7483690-7483709 | Msa0005040:intron | 25.0% |
| ! | TTGTCAAAACTAAATGTACT+GGG | - | chr1_1:7483780-7483799 | None:intergenic | 25.0% |
| ! | TTTGTCAAAACTAAATGTAC+TGG | - | chr1_1:7483781-7483800 | None:intergenic | 25.0% |
| !! | GGAAATGAAACGTATATTTT+AGG | - | chr1_1:7483846-7483865 | None:intergenic | 25.0% |
| !! | TTTTCATGGACATAATATTG+CGG | + | chr1_1:7484023-7484042 | Msa0005040:intron | 25.0% |
| ! | TGTGATATATGCAAAAATTG+TGG | - | chr1_1:7484113-7484132 | None:intergenic | 25.0% |
| ! | TTGAATGCTTATAATTTACC+TGG | + | chr1_1:7484215-7484234 | Msa0005040:intron | 25.0% |
| ! | AAAAAAAAAAAAGAGCAGCA+GGG | - | chr1_1:7484597-7484616 | None:intergenic | 25.0% |
| ! | ATGAAAACTTACAGCAAATA+AGG | - | chr1_1:7484673-7484692 | None:intergenic | 25.0% |
| !! | TTTTACAAGACATGATGTTT+CGG | - | chr1_1:7484868-7484887 | None:intergenic | 25.0% |
| ! | AAAGAATTTGTGATATTTGC+AGG | + | chr1_1:7484907-7484926 | Msa0005040:intron | 25.0% |
| !!! | GAGTCATTTACTTTTATTTG+TGG | + | chr1_1:7485056-7485075 | Msa0005040:intron | 25.0% |
| !!! | TTACTTTTATTTGTGGTGAT+AGG | + | chr1_1:7485063-7485082 | Msa0005040:intron | 25.0% |
| ! | AAAATGATAAATTACTGGGT+GGG | - | chr1_1:7485264-7485283 | None:intergenic | 25.0% |
| ! | GGACAAAATGATAAATTACT+GGG | - | chr1_1:7485268-7485287 | None:intergenic | 25.0% |
| ! | CCAAAAATATCAATTGCTTT+GGG | - | chr1_1:7485320-7485339 | None:intergenic | 25.0% |
| ! | TCCAAAAATATCAATTGCTT+TGG | - | chr1_1:7485321-7485340 | None:intergenic | 25.0% |
| ! | CTGAATGCTTATTTATTGAA+TGG | - | chr1_1:7485830-7485849 | None:intergenic | 25.0% |
| ! | TTCCAAAACTAATACATCAA+TGG | + | chr1_1:7485901-7485920 | Msa0005040:intron | 25.0% |
| !!! | TACCATTGATGTATTAGTTT+TGG | - | chr1_1:7485906-7485925 | None:intergenic | 25.0% |
| ! | ATCATATATACTTGTATGCA+TGG | + | chr1_1:7486241-7486260 | Msa0005040:intron | 25.0% |
| ! | TTTGCATCAAAATTCAAAAC+AGG | - | chr1_1:7486278-7486297 | None:intergenic | 25.0% |
| ! | CTATAAAGACTAGAATTACT+GGG | + | chr1_1:7486840-7486859 | Msa0005040:CDS | 25.0% |
| ! | TATAAAGACTAGAATTACTG+GGG | + | chr1_1:7486841-7486860 | Msa0005040:CDS | 25.0% |
| ! | TAGAAGTAGATGAATAATGA+TGG | + | chr1_1:7486869-7486888 | Msa0005040:exon | 25.0% |
| ! | AATGGGAAATATGATGAAAT+AGG | + | chr1_1:7486956-7486975 | Msa0005040:three_prime_UTR | 25.0% |
| ! | ATGGGAAATATGATGAAATA+GGG | + | chr1_1:7486957-7486976 | Msa0005040:three_prime_UTR | 25.0% |
| ! | ATCAACAAAAAGGAAAGAAA+AGG | + | chr1_1:7487023-7487042 | Msa0005040:three_prime_UTR | 25.0% |
| !!! | ACAACAACTTTTTCAAAGTA+GGG | - | chr1_1:7487227-7487246 | None:intergenic | 25.0% |
| !! | TACTTTGAAAAAGTTGTTGT+CGG | + | chr1_1:7487227-7487246 | Msa0005040:three_prime_UTR | 25.0% |
| CATATTATCAGAACATGTCA+TGG | + | chr1_1:7483548-7483567 | Msa0005040:CDS | 30.0% | |
| ATTTAAACCCAAATCAGGAT+AGG | - | chr1_1:7483624-7483643 | None:intergenic | 30.0% | |
| !! | TTTTAGGAGCAAATCTTGAT+GGG | - | chr1_1:7483893-7483912 | None:intergenic | 30.0% |
| !! | ATTTTAGGAGCAAATCTTGA+TGG | - | chr1_1:7483894-7483913 | None:intergenic | 30.0% |
| !!! | CAAATCTAAATGTCGTTTTG+TGG | + | chr1_1:7483932-7483951 | Msa0005040:intron | 30.0% |
| !!! | TGTCGTTTTGTGGATTTTAT+CGG | + | chr1_1:7483942-7483961 | Msa0005040:intron | 30.0% |
| ATCGGAAATGTTTACTTTCT+TGG | + | chr1_1:7483960-7483979 | Msa0005040:intron | 30.0% | |
| AATTACTTCGTGACACTAAA+TGG | - | chr1_1:7484403-7484422 | None:intergenic | 30.0% | |
| !! | CTCTATCTGGCTTTAAATAT+TGG | + | chr1_1:7484436-7484455 | Msa0005040:intron | 30.0% |
| GAAAAAAAAAAAAGAGCAGC+AGG | - | chr1_1:7484598-7484617 | None:intergenic | 30.0% | |
| TCTTAATGCAGTTATGTGTA+TGG | + | chr1_1:7484620-7484639 | Msa0005040:CDS | 30.0% | |
| CTTAATGCAGTTATGTGTAT+GGG | + | chr1_1:7484621-7484640 | Msa0005040:CDS | 30.0% | |
| TAAAGGAAATATTGCTGAAG+CGG | + | chr1_1:7484972-7484991 | Msa0005040:CDS | 30.0% | |
| CTAACACTGAAAATAGAACA+AGG | - | chr1_1:7485033-7485052 | None:intergenic | 30.0% | |
| ! | CTTGTTCTATTTTCAGTGTT+AGG | + | chr1_1:7485031-7485050 | Msa0005040:intron | 30.0% |
| ! | AAATATGTTGACTAACCCTT+CGG | - | chr1_1:7485138-7485157 | None:intergenic | 30.0% |
| !!! | TTTTATTTTCATGTAGGGAC+TGG | + | chr1_1:7485155-7485174 | Msa0005040:intron | 30.0% |
| !! | TTTATTTTCATGTAGGGACT+GGG | + | chr1_1:7485156-7485175 | Msa0005040:intron | 30.0% |
| GTTTAAGTGGCATTTAACAT+GGG | + | chr1_1:7485178-7485197 | Msa0005040:intron | 30.0% | |
| CAAAATGATAAATTACTGGG+TGG | - | chr1_1:7485265-7485284 | None:intergenic | 30.0% | |
| GGGACAAAATGATAAATTAC+TGG | - | chr1_1:7485269-7485288 | None:intergenic | 30.0% | |
| ATGATGTCTTCTTGATACTT+CGG | - | chr1_1:7485290-7485309 | None:intergenic | 30.0% | |
| ! | CCCAAAGCAATTGATATTTT+TGG | + | chr1_1:7485317-7485336 | Msa0005040:intron | 30.0% |
| GAAAAAATTGGGATGAAGAA+AGG | - | chr1_1:7485431-7485450 | None:intergenic | 30.0% | |
| AATGTGCATTTGACTATGTT+GGG | + | chr1_1:7485927-7485946 | Msa0005040:intron | 30.0% | |
| ! | GGTATGATATTTTACTTCCA+AGG | + | chr1_1:7486110-7486129 | Msa0005040:intron | 30.0% |
| GAAAATGAAAATCACAACCT+TGG | - | chr1_1:7486130-7486149 | None:intergenic | 30.0% | |
| !! | TTTCATTTTCTTTTTGAGGG+TGG | + | chr1_1:7486140-7486159 | Msa0005040:intron | 30.0% |
| !! | TTCATTTTCTTTTTGAGGGT+GGG | + | chr1_1:7486141-7486160 | Msa0005040:intron | 30.0% |
| CAACATGTTAGTTATTGCTA+AGG | + | chr1_1:7486196-7486215 | Msa0005040:intron | 30.0% | |
| ! | ACTGTAATGTTATGTTGCTT+AGG | + | chr1_1:7486338-7486357 | Msa0005040:intron | 30.0% |
| ! | CTGTAATGTTATGTTGCTTA+GGG | + | chr1_1:7486339-7486358 | Msa0005040:intron | 30.0% |
| TGTCTAACTTTGTAGTGATA+TGG | - | chr1_1:7486497-7486516 | None:intergenic | 30.0% | |
| CTATTTACATACCTCAACTA+AGG | - | chr1_1:7486532-7486551 | None:intergenic | 30.0% | |
| ! | CCAGTAATTCTAGTCTTTAT+AGG | - | chr1_1:7486842-7486861 | None:intergenic | 30.0% |
| CCTATAAAGACTAGAATTAC+TGG | + | chr1_1:7486839-7486858 | Msa0005040:CDS | 30.0% | |
| AGTAGATGAATAATGATGGT+TGG | + | chr1_1:7486873-7486892 | Msa0005040:three_prime_UTR | 30.0% | |
| TGTTTCGTAAACAGATCTTA+CGG | - | chr1_1:7486915-7486934 | None:intergenic | 30.0% | |
| !! | GTTGTAGATAATGGGATATA+AGG | + | chr1_1:7486991-7487010 | Msa0005040:three_prime_UTR | 30.0% |
| GTACAATTGTAAAGCAAACA+TGG | + | chr1_1:7487183-7487202 | Msa0005040:three_prime_UTR | 30.0% | |
| !!! | CAACAACTTTTTCAAAGTAG+GGG | - | chr1_1:7487226-7487245 | None:intergenic | 30.0% |
| !!! | GACAACAACTTTTTCAAAGT+AGG | - | chr1_1:7487228-7487247 | None:intergenic | 30.0% |
| TCTTATCACCTATCCTGATT+TGG | + | chr1_1:7483613-7483632 | Msa0005040:CDS | 35.0% | |
| CTTATCACCTATCCTGATTT+GGG | + | chr1_1:7483614-7483633 | Msa0005040:CDS | 35.0% | |
| GCCCTGTAGTACAAAAATAA+TGG | - | chr1_1:7483694-7483713 | None:intergenic | 35.0% | |
| AAATAATAACCCCTGAAAGC+AGG | - | chr1_1:7484064-7484083 | None:intergenic | 35.0% | |
| ATATATCACATTAGTCCACC+TGG | + | chr1_1:7484123-7484142 | Msa0005040:CDS | 35.0% | |
| TATATCACATTAGTCCACCT+GGG | + | chr1_1:7484124-7484143 | Msa0005040:CDS | 35.0% | |
| ACAGATAGAACAGGATAATC+TGG | - | chr1_1:7484301-7484320 | None:intergenic | 35.0% | |
| AAGTCATCTACAGATAGAAC+AGG | - | chr1_1:7484310-7484329 | None:intergenic | 35.0% | |
| TCTATCTGTAGATGACTTAG+CGG | + | chr1_1:7484312-7484331 | Msa0005040:CDS | 35.0% | |
| !!! | CTGAGGTGCTTAACTTTTTT+GGG | + | chr1_1:7484344-7484363 | Msa0005040:CDS | 35.0% |
| ! | ATTTGAAGCTCCTTCTGTAA+TGG | + | chr1_1:7484489-7484508 | Msa0005040:intron | 35.0% |
| TTCAATCTGTCCATTACAGA+AGG | - | chr1_1:7484502-7484521 | None:intergenic | 35.0% | |
| AATGGACAGATTGAAAGTGA+CGG | + | chr1_1:7484507-7484526 | Msa0005040:intron | 35.0% | |
| AAATATCGACAACGTGTTCT+TGG | + | chr1_1:7484767-7484786 | Msa0005040:CDS | 35.0% | |
| CAAGATGGTTCTTTACATAG+AGG | - | chr1_1:7484809-7484828 | None:intergenic | 35.0% | |
| CTCTATGTAAAGAACCATCT+TGG | + | chr1_1:7484807-7484826 | Msa0005040:CDS | 35.0% | |
| ATGATGTTTCGGCAAAGAAA+AGG | - | chr1_1:7484857-7484876 | None:intergenic | 35.0% | |
| ! | TGTACTTTTATGGCATGTGT+GGG | + | chr1_1:7484945-7484964 | Msa0005040:CDS | 35.0% |
| GGTTTAAGTGGCATTTAACA+TGG | + | chr1_1:7485177-7485196 | Msa0005040:intron | 35.0% | |
| TGATGTCTTCTTGATACTTC+GGG | - | chr1_1:7485289-7485308 | None:intergenic | 35.0% | |
| CAAGTGATGCTCATCTAATA+AGG | - | chr1_1:7485453-7485472 | None:intergenic | 35.0% | |
| AATCTTCAATGCATGTACAG+TGG | + | chr1_1:7485665-7485684 | Msa0005040:intron | 35.0% | |
| CTTGCTTAAAATCTGTTCAC+TGG | + | chr1_1:7485706-7485725 | Msa0005040:intron | 35.0% | |
| ACAATGTTGGTCAAGTCAAT+TGG | - | chr1_1:7485738-7485757 | None:intergenic | 35.0% | |
| ! | CAACCAACATGATTTTCGAA+GGG | - | chr1_1:7485880-7485899 | None:intergenic | 35.0% |
| ! | TCAACCAACATGATTTTCGA+AGG | - | chr1_1:7485881-7485900 | None:intergenic | 35.0% |
| GAATGTGCATTTGACTATGT+TGG | + | chr1_1:7485926-7485945 | Msa0005040:intron | 35.0% | |
| ATGTGCATTTGACTATGTTG+GGG | + | chr1_1:7485928-7485947 | Msa0005040:intron | 35.0% | |
| AATATATCAAGAGTCAGGCA+AGG | - | chr1_1:7486027-7486046 | None:intergenic | 35.0% | |
| TATTACAGTCTTTGGATGAG+AGG | + | chr1_1:7486047-7486066 | Msa0005040:intron | 35.0% | |
| GGTTCCTTGAAGCTATTAAT+GGG | + | chr1_1:7486089-7486108 | Msa0005040:CDS | 35.0% | |
| CATACCCATTAATAGCTTCA+AGG | - | chr1_1:7486096-7486115 | None:intergenic | 35.0% | |
| !! | TCATTTTCTTTTTGAGGGTG+GGG | + | chr1_1:7486142-7486161 | Msa0005040:intron | 35.0% |
| ACTTTGTGATGGCATATTAC+AGG | + | chr1_1:7486382-7486401 | Msa0005040:intron | 35.0% | |
| CATTCTCAACACATAGTAAC+AGG | - | chr1_1:7486563-7486582 | None:intergenic | 35.0% | |
| AGCTGTTGTTGTGTAATTAC+AGG | + | chr1_1:7486628-7486647 | Msa0005040:intron | 35.0% | |
| TAATTACAGGTTCAAGCATG+CGG | + | chr1_1:7486641-7486660 | Msa0005040:intron | 35.0% | |
| ATTGGTATTAACATGGCATG+GGG | - | chr1_1:7486689-7486708 | None:intergenic | 35.0% | |
| CATTGGTATTAACATGGCAT+GGG | - | chr1_1:7486690-7486709 | None:intergenic | 35.0% | |
| GTACTCCATTGGTATTAACA+TGG | - | chr1_1:7486696-7486715 | None:intergenic | 35.0% | |
| ! | GAAATACAAGATGGACTCAA+GGG | - | chr1_1:7486776-7486795 | None:intergenic | 35.0% |
| ! | AGAAATACAAGATGGACTCA+AGG | - | chr1_1:7486777-7486796 | None:intergenic | 35.0% |
| AATTTCAAACCCATACTCTC+GGG | - | chr1_1:7486815-7486834 | None:intergenic | 35.0% | |
| CAATTTCAAACCCATACTCT+CGG | - | chr1_1:7486816-7486835 | None:intergenic | 35.0% | |
| GATGAATAATGATGGTTGGT+TGG | + | chr1_1:7486877-7486896 | Msa0005040:three_prime_UTR | 35.0% | |
| TTTCGTAAACAGATCTTACG+GGG | - | chr1_1:7486913-7486932 | None:intergenic | 35.0% | |
| GTTTCGTAAACAGATCTTAC+GGG | - | chr1_1:7486914-7486933 | None:intergenic | 35.0% | |
| TCCCATTATCTACAACCATA+CGG | - | chr1_1:7486987-7487006 | None:intergenic | 35.0% | |
| CAATTGTAAAGCAAACATGG+AGG | + | chr1_1:7487186-7487205 | Msa0005040:three_prime_UTR | 35.0% | |
| TGCTACTGATATGTATCTGC+AGG | + | chr1_1:7483523-7483542 | Msa0005040:exon | 40.0% | |
| AGCAGCAAGTAATATGCTTC+TGG | - | chr1_1:7484090-7484109 | None:intergenic | 40.0% | |
| TCTTCAAGAGCTATTGCAGT+TGG | + | chr1_1:7484258-7484277 | Msa0005040:intron | 40.0% | |
| CTTCAAGAGCTATTGCAGTT+GGG | + | chr1_1:7484259-7484278 | Msa0005040:intron | 40.0% | |
| !!! | GCTGAGGTGCTTAACTTTTT+TGG | + | chr1_1:7484343-7484362 | Msa0005040:CDS | 40.0% |
| !! | GCTTTGAAGCTATCTCTATC+TGG | + | chr1_1:7484423-7484442 | Msa0005040:intron | 40.0% |
| ! | ATTTTTCCTTCCCCACATCA+TGG | + | chr1_1:7484564-7484583 | Msa0005040:intron | 40.0% |
| ! | TTTTTCCTTCCCCACATCAT+GGG | + | chr1_1:7484565-7484584 | Msa0005040:intron | 40.0% |
| TAAAGTCATTTGGGAGAGAG+AGG | - | chr1_1:7484708-7484727 | None:intergenic | 40.0% | |
| ! | CTGTACTTTTATGGCATGTG+TGG | + | chr1_1:7484944-7484963 | Msa0005040:CDS | 40.0% |
| ! | GTACTTTTATGGCATGTGTG+GGG | + | chr1_1:7484946-7484965 | Msa0005040:CDS | 40.0% |
| TTGTGGTGATAGGAAATTCG+CGG | + | chr1_1:7485073-7485092 | Msa0005040:intron | 40.0% | |
| GCTTTGACTATATCTGACTC+CGG | - | chr1_1:7485112-7485131 | None:intergenic | 40.0% | |
| ATATAGTCAAAGCATGCCGA+AGG | + | chr1_1:7485119-7485138 | Msa0005040:CDS | 40.0% | |
| TATAGTCAAAGCATGCCGAA+GGG | + | chr1_1:7485120-7485139 | Msa0005040:CDS | 40.0% | |
| GTGGGATTGGATAATAATGC+AGG | - | chr1_1:7485246-7485265 | None:intergenic | 40.0% | |
| GATAAATTACTGGGTGGGAT+TGG | - | chr1_1:7485259-7485278 | None:intergenic | 40.0% | |
| AAAGCGGTAAAATGAGGAAC+TGG | - | chr1_1:7485352-7485371 | None:intergenic | 40.0% | |
| !! | TCCTCATTTTACCGCTTTTC+TGG | + | chr1_1:7485354-7485373 | Msa0005040:intron | 40.0% |
| !! | CCTCATTTTACCGCTTTTCT+GGG | + | chr1_1:7485355-7485374 | Msa0005040:intron | 40.0% |
| !! | TTTTTCGGTTCCCAGAAAAG+CGG | - | chr1_1:7485368-7485387 | None:intergenic | 40.0% |
| ! | GACAAGCAGACAAGCTTTTT+CGG | - | chr1_1:7485383-7485402 | None:intergenic | 40.0% |
| TTGCCCTTCGAAAATCATGT+TGG | + | chr1_1:7485874-7485893 | Msa0005040:intron | 40.0% | |
| CGGTTCCTTGAAGCTATTAA+TGG | + | chr1_1:7486088-7486107 | Msa0005040:CDS | 40.0% | |
| GGTTTCTCAATCCTTCACTT+AGG | - | chr1_1:7486416-7486435 | None:intergenic | 40.0% | |
| GATTGAGAAACCTACATTGC+CGG | + | chr1_1:7486424-7486443 | Msa0005040:CDS | 40.0% | |
| AAATTAGTGACCGGCAATGT+AGG | - | chr1_1:7486437-7486456 | None:intergenic | 40.0% | |
| ! | TGCCGGTCACTAATTTTTGT+TGG | + | chr1_1:7486441-7486460 | Msa0005040:CDS | 40.0% |
| ! | GCCGGTCACTAATTTTTGTT+GGG | + | chr1_1:7486442-7486461 | Msa0005040:CDS | 40.0% |
| CCCCAACAAAAATTAGTGAC+CGG | - | chr1_1:7486446-7486465 | None:intergenic | 40.0% | |
| ! | CCGGTCACTAATTTTTGTTG+GGG | + | chr1_1:7486443-7486462 | Msa0005040:CDS | 40.0% |
| TATGTCTCCATATCACTCAG+AGG | + | chr1_1:7486467-7486486 | Msa0005040:CDS | 40.0% | |
| AATTACAGGTTCAAGCATGC+GGG | + | chr1_1:7486642-7486661 | Msa0005040:intron | 40.0% | |
| CCATTGGTATTAACATGGCA+TGG | - | chr1_1:7486691-7486710 | None:intergenic | 40.0% | |
| CCATGCCATGTTAATACCAA+TGG | + | chr1_1:7486688-7486707 | Msa0005040:CDS | 40.0% | |
| ! | ACCAATGGAGTACTTTCTCA+TGG | + | chr1_1:7486703-7486722 | Msa0005040:CDS | 40.0% |
| ! | CCAATGGAGTACTTTCTCAT+GGG | + | chr1_1:7486704-7486723 | Msa0005040:CDS | 40.0% |
| GAGTACTTTCTCATGGGATA+TGG | + | chr1_1:7486710-7486729 | Msa0005040:CDS | 40.0% | |
| AGCTCAGGAGAAATACAAGA+TGG | - | chr1_1:7486785-7486804 | None:intergenic | 40.0% | |
| !!! | CTTTTTTCACCCGAGAGTAT+GGG | + | chr1_1:7486803-7486822 | Msa0005040:CDS | 40.0% |
| TGCCGTATGGTTGTAGATAA+TGG | + | chr1_1:7486982-7487001 | Msa0005040:three_prime_UTR | 40.0% | |
| GCCGTATGGTTGTAGATAAT+GGG | + | chr1_1:7486983-7487002 | Msa0005040:three_prime_UTR | 40.0% | |
| TCTGTCTCTGTTGCTGTGTA+TGG | + | chr1_1:7483572-7483591 | Msa0005040:CDS | 45.0% | |
| CTGTCTCTGTTGCTGTGTAT+GGG | + | chr1_1:7483573-7483592 | Msa0005040:CDS | 45.0% | |
| TGTCTCTGTTGCTGTGTATG+GGG | + | chr1_1:7483574-7483593 | Msa0005040:CDS | 45.0% | |
| !! | TGATAAGAGCTGGTTTGTCC+TGG | - | chr1_1:7483601-7483620 | None:intergenic | 45.0% |
| TCAGGATAGGTGATAAGAGC+TGG | - | chr1_1:7483611-7483630 | None:intergenic | 45.0% | |
| GCAGAAGATGATAAGCAACC+AGG | - | chr1_1:7484236-7484255 | None:intergenic | 45.0% | |
| ! | CTTAGCGGATCAAATAGCTG+AGG | + | chr1_1:7484327-7484346 | Msa0005040:CDS | 45.0% |
| AGGGTTAGATCCCATGATGT+GGG | - | chr1_1:7484578-7484597 | None:intergenic | 45.0% | |
| ATGTGTATGGGAGTAACTGC+TGG | + | chr1_1:7484633-7484652 | Msa0005040:CDS | 45.0% | |
| TGTGTATGGGAGTAACTGCT+GGG | + | chr1_1:7484634-7484653 | Msa0005040:CDS | 45.0% | |
| ATTTGGGAGAGAGAGGAAGA+CGG | - | chr1_1:7484701-7484720 | None:intergenic | 45.0% | |
| AAGAACCATCTTGGTCTGAG+TGG | + | chr1_1:7484816-7484835 | Msa0005040:CDS | 45.0% | |
| TACAACCACTCAGACCAAGA+TGG | - | chr1_1:7484824-7484843 | None:intergenic | 45.0% | |
| GTCTGAGTGGTTGTACAACA+AGG | + | chr1_1:7484829-7484848 | Msa0005040:CDS | 45.0% | |
| !!! | GCTGAAGCGGTATTTTAGCA+AGG | + | chr1_1:7484985-7485004 | Msa0005040:CDS | 45.0% |
| ATGTAGGGACTGGGTTTAAG+TGG | + | chr1_1:7485165-7485184 | Msa0005040:intron | 45.0% | |
| ACGAATAGATTTGCCCACCA+TGG | + | chr1_1:7485204-7485223 | Msa0005040:intron | 45.0% | |
| TATGAGCATCTGACCATGGT+GGG | - | chr1_1:7485220-7485239 | None:intergenic | 45.0% | |
| ATATGAGCATCTGACCATGG+TGG | - | chr1_1:7485221-7485240 | None:intergenic | 45.0% | |
| GACATATGAGCATCTGACCA+TGG | - | chr1_1:7485224-7485243 | None:intergenic | 45.0% | |
| CCCAGAAAAGCGGTAAAATG+AGG | - | chr1_1:7485358-7485377 | None:intergenic | 45.0% | |
| AGCTTCAGAAAACCAGCAAC+AGG | - | chr1_1:7485997-7486016 | None:intergenic | 45.0% | |
| AGAGGCAAAGCTTGAATGTG+TGG | + | chr1_1:7486065-7486084 | Msa0005040:CDS | 45.0% | |
| CTCAATCCTTCACTTAGGTC+AGG | - | chr1_1:7486411-7486430 | None:intergenic | 45.0% | |
| ACGATTCAGTGCCTTAGTTG+AGG | + | chr1_1:7486518-7486537 | Msa0005040:CDS | 45.0% | |
| !! | CCCATGAGAAAGTACTCCAT+TGG | - | chr1_1:7486707-7486726 | None:intergenic | 45.0% |
| TCATGGGATATGGTCTGTAC+AGG | + | chr1_1:7486720-7486739 | Msa0005040:CDS | 45.0% | |
| ATGGACTCAAGGGACTTCTT+GGG | - | chr1_1:7486766-7486785 | None:intergenic | 45.0% | |
| !!! | GCTTTTTTCACCCGAGAGTA+TGG | + | chr1_1:7486802-7486821 | Msa0005040:CDS | 45.0% |
| !! | ATGAAATAGGGAGTGCCGTA+TGG | + | chr1_1:7486969-7486988 | Msa0005040:three_prime_UTR | 45.0% |
| ATCAGACGTCTCCTGCTTTC+AGG | + | chr1_1:7484050-7484069 | Msa0005040:intron | 50.0% | |
| TCAGACGTCTCCTGCTTTCA+GGG | + | chr1_1:7484051-7484070 | Msa0005040:intron | 50.0% | |
| TAGATCCCATGATGTGGGGA+AGG | - | chr1_1:7484573-7484592 | None:intergenic | 50.0% | |
| GGGTTAGATCCCATGATGTG+GGG | - | chr1_1:7484577-7484596 | None:intergenic | 50.0% | |
| CAGGGTTAGATCCCATGATG+TGG | - | chr1_1:7484579-7484598 | None:intergenic | 50.0% | |
| GTGTATGGGAGTAACTGCTG+GGG | + | chr1_1:7484635-7484654 | Msa0005040:CDS | 50.0% | |
| ! | CTTTTATGGCATGTGTGGGG+TGG | + | chr1_1:7484949-7484968 | Msa0005040:CDS | 50.0% |
| TGGTGATAGGAAATTCGCGG+TGG | + | chr1_1:7485076-7485095 | Msa0005040:intron | 50.0% | |
| TCGCGGTGGTACTCAATTTC+CGG | + | chr1_1:7485090-7485109 | Msa0005040:CDS | 50.0% | |
| CCAGCAACAGGTAAAACCCA+GGG | - | chr1_1:7485985-7486004 | None:intergenic | 50.0% | |
| ACCAGCAACAGGTAAAACCC+AGG | - | chr1_1:7485986-7486005 | None:intergenic | 50.0% | |
| GGCAAAGCTTGAATGTGTGG+CGG | + | chr1_1:7486068-7486087 | Msa0005040:CDS | 50.0% | |
| !! | TTTTGAGGGTGGGGTGTTTC+AGG | + | chr1_1:7486151-7486170 | Msa0005040:intron | 50.0% |
| AGGAGACCTGACCTAAGTGA+AGG | + | chr1_1:7486402-7486421 | Msa0005040:intron | 50.0% | |
| ! | TGGAGTGCCTCTGAGTGATA+TGG | - | chr1_1:7486477-7486496 | None:intergenic | 50.0% |
| ATGCGGGTCAATGGTAACAG+AGG | + | chr1_1:7486658-7486677 | Msa0005040:CDS | 50.0% | |
| ! | GATGGACTCAAGGGACTTCT+TGG | - | chr1_1:7486767-7486786 | None:intergenic | 50.0% |
| CTCTCGGGTGAAAAAAGCTC+AGG | - | chr1_1:7486800-7486819 | None:intergenic | 50.0% | |
| TGTTGCTGTGTATGGGGACC+AGG | + | chr1_1:7483580-7483599 | Msa0005040:CDS | 55.0% | |
| CAGACGTCTCCTGCTTTCAG+GGG | + | chr1_1:7484052-7484071 | Msa0005040:intron | 55.0% | |
| CATTAGTCCACCTGGGCATG+AGG | + | chr1_1:7484131-7484150 | Msa0005040:CDS | 55.0% | |
| AAGCTACAGACCTCATGCCC+AGG | - | chr1_1:7484144-7484163 | None:intergenic | 55.0% | |
| TGGCATGTGTGGGGTGGTAA+AGG | + | chr1_1:7484955-7484974 | Msa0005040:CDS | 55.0% | |
| GCAACAGGTAAAACCCAGGG+CGG | - | chr1_1:7485982-7486001 | None:intergenic | 55.0% | |
| ! | CCCTGGGTTTTACCTGTTGC+TGG | + | chr1_1:7485982-7486001 | Msa0005040:intron | 55.0% |
| GGTTCAAGCATGCGGGTCAA+TGG | + | chr1_1:7486649-7486668 | Msa0005040:intron | 55.0% | |
| ATGGTCTGTACAGGCCATCC+AGG | + | chr1_1:7486729-7486748 | Msa0005040:CDS | 55.0% | |
| TCTTGGGCTGACACTGTTCC+TGG | - | chr1_1:7486750-7486769 | None:intergenic | 55.0% | |
| CTACAGACCTCATGCCCAGG+TGG | - | chr1_1:7484141-7484160 | None:intergenic | 60.0% | |
| ATCGTGCTAAACGCCGCCCT+GGG | + | chr1_1:7485966-7485985 | Msa0005040:intron | 60.0% | |
| GGGCTGACACTGTTCCTGGA+TGG | - | chr1_1:7486746-7486765 | None:intergenic | 60.0% | |
| GATCGTGCTAAACGCCGCCC+TGG | + | chr1_1:7485965-7485984 | Msa0005040:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 7483494 | 7487358 | 7483494 | ID=Msa0005040;Name=Msa0005040 |
| chr1_1 | mRNA | 7483494 | 7487358 | 7483494 | ID=Msa0005040-mRNA-1;Parent=Msa0005040;Name=Msa0005040-mRNA-1;_AED=0.25;_eAED=0.25;_QI=39|1|1|1|1|1|10|487|331 |
| chr1_1 | exon | 7483494 | 7483644 | 7483494 | ID=Msa0005040-mRNA-1:exon:2608;Parent=Msa0005040-mRNA-1 |
| chr1_1 | exon | 7484055 | 7484152 | 7484055 | ID=Msa0005040-mRNA-1:exon:2609;Parent=Msa0005040-mRNA-1 |
| chr1_1 | exon | 7484277 | 7484365 | 7484277 | ID=Msa0005040-mRNA-1:exon:2610;Parent=Msa0005040-mRNA-1 |
| chr1_1 | exon | 7484620 | 7484680 | 7484620 | ID=Msa0005040-mRNA-1:exon:2611;Parent=Msa0005040-mRNA-1 |
| chr1_1 | exon | 7484764 | 7484850 | 7484764 | ID=Msa0005040-mRNA-1:exon:2612;Parent=Msa0005040-mRNA-1 |
| chr1_1 | exon | 7484929 | 7485006 | 7484929 | ID=Msa0005040-mRNA-1:exon:2613;Parent=Msa0005040-mRNA-1 |
| chr1_1 | exon | 7485085 | 7485141 | 7485085 | ID=Msa0005040-mRNA-1:exon:2614;Parent=Msa0005040-mRNA-1 |
| chr1_1 | exon | 7486055 | 7486110 | 7486055 | ID=Msa0005040-mRNA-1:exon:2615;Parent=Msa0005040-mRNA-1 |
| chr1_1 | exon | 7486404 | 7486539 | 7486404 | ID=Msa0005040-mRNA-1:exon:2616;Parent=Msa0005040-mRNA-1 |
| chr1_1 | exon | 7486650 | 7487358 | 7486650 | ID=Msa0005040-mRNA-1:exon:2617;Parent=Msa0005040-mRNA-1 |
| chr1_1 | five_prime_UTR | 7483494 | 7483532 | 7483494 | ID=Msa0005040-mRNA-1:five_prime_utr;Parent=Msa0005040-mRNA-1 |
| chr1_1 | CDS | 7483533 | 7483644 | 7483533 | ID=Msa0005040-mRNA-1:cds;Parent=Msa0005040-mRNA-1 |
| chr1_1 | CDS | 7484055 | 7484152 | 7484055 | ID=Msa0005040-mRNA-1:cds;Parent=Msa0005040-mRNA-1 |
| chr1_1 | CDS | 7484277 | 7484365 | 7484277 | ID=Msa0005040-mRNA-1:cds;Parent=Msa0005040-mRNA-1 |
| chr1_1 | CDS | 7484620 | 7484680 | 7484620 | ID=Msa0005040-mRNA-1:cds;Parent=Msa0005040-mRNA-1 |
| chr1_1 | CDS | 7484764 | 7484850 | 7484764 | ID=Msa0005040-mRNA-1:cds;Parent=Msa0005040-mRNA-1 |
| chr1_1 | CDS | 7484929 | 7485006 | 7484929 | ID=Msa0005040-mRNA-1:cds;Parent=Msa0005040-mRNA-1 |
| chr1_1 | CDS | 7485085 | 7485141 | 7485085 | ID=Msa0005040-mRNA-1:cds;Parent=Msa0005040-mRNA-1 |
| chr1_1 | CDS | 7486055 | 7486110 | 7486055 | ID=Msa0005040-mRNA-1:cds;Parent=Msa0005040-mRNA-1 |
| chr1_1 | CDS | 7486404 | 7486539 | 7486404 | ID=Msa0005040-mRNA-1:cds;Parent=Msa0005040-mRNA-1 |
| chr1_1 | CDS | 7486650 | 7486871 | 7486650 | ID=Msa0005040-mRNA-1:cds;Parent=Msa0005040-mRNA-1 |
| chr1_1 | three_prime_UTR | 7486872 | 7487358 | 7486872 | ID=Msa0005040-mRNA-1:three_prime_utr;Parent=Msa0005040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
