Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0098430 | XP_020210294.1 | 73.864 | 352 | 38 | 4 | 9 | 328 | 20 | 349 | 2.70e-176 | 502 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0098430 | sp|Q9FJT7|NDL1_ARATH | 61.671 | 347 | 79 | 5 | 12 | 326 | 21 | 345 | 5.21e-143 | 410 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0098430 | A0A151TYZ5 | 73.864 | 352 | 38 | 4 | 9 | 328 | 20 | 349 | 1.29e-176 | 502 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005040 | Msa0098430 | 0.887005 | 2.085661e-72 | -8.615850e-47 |
| Msa0053100 | Msa0098430 | 0.850661 | 1.470106e-60 | -8.615850e-47 |
| Msa0098430 | Msa0102750 | 0.807707 | 4.431029e-50 | -8.615850e-47 |
| Msa0098430 | Msa0105420 | 0.804651 | 1.950401e-49 | -8.615850e-47 |
| Msa0098430 | Msa0142470 | 0.807658 | 4.539293e-50 | -8.615850e-47 |
| Msa0098430 | Msa0275400 | -0.800831 | 1.198482e-48 | -8.615850e-47 |
| Msa0098430 | Msa0334350 | 0.811107 | 8.260138e-51 | -8.615850e-47 |
| Msa0098430 | Msa0569020 | 0.801037 | 1.087910e-48 | -8.615850e-47 |
| Msa0098430 | Msa0643250 | 0.812471 | 4.169217e-51 | -8.615850e-47 |
| Msa0098430 | Msa0747770 | 0.876335 | 1.515661e-68 | -8.615850e-47 |
| Msa0098430 | Msa0754720 | -0.801424 | 9.063858e-49 | -8.615850e-47 |
| Msa0098430 | Msa1143620 | 0.800740 | 1.250434e-48 | -8.615850e-47 |
| Msa0098430 | Msa1398860 | 0.821022 | 5.034441e-53 | -8.615850e-47 |
| Msa0098430 | Msa1415940 | 0.805540 | 1.270818e-49 | -8.615850e-47 |
| Msa0098430 | Msa1459390 | 0.800283 | 1.549956e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0098430 | MtrunA17_Chr1g0151691 | 78.223 | 349 | 22 | 4 | 12 | 328 | 2 | 328 | 0.0 | 527 |
| Msa0098430 | MtrunA17_Chr8g0389281 | 63.324 | 349 | 74 | 4 | 12 | 328 | 21 | 347 | 8.01e-151 | 427 |
| Msa0098430 | MtrunA17_Chr1g0190891 | 49.326 | 371 | 116 | 5 | 7 | 327 | 5 | 353 | 6.36e-117 | 341 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0098430 | AT5G56750.2 | 61.671 | 347 | 79 | 5 | 12 | 326 | 2 | 326 | 2.64e-144 | 410 |
| Msa0098430 | AT5G56750.1 | 61.671 | 347 | 79 | 5 | 12 | 326 | 21 | 345 | 5.29e-144 | 410 |
| Msa0098430 | AT5G11790.1 | 59.563 | 366 | 84 | 6 | 1 | 325 | 1 | 343 | 1.58e-142 | 406 |
| Msa0098430 | AT2G19620.2 | 59.130 | 345 | 87 | 4 | 12 | 324 | 2 | 324 | 2.12e-139 | 398 |
| Msa0098430 | AT2G19620.1 | 59.130 | 345 | 87 | 4 | 12 | 324 | 21 | 343 | 4.24e-139 | 398 |
| Msa0098430 | AT5G11790.2 | 68.327 | 281 | 66 | 4 | 45 | 325 | 32 | 289 | 8.05e-133 | 380 |
| Msa0098430 | AT2G19620.3 | 63.571 | 280 | 80 | 3 | 45 | 324 | 32 | 289 | 5.81e-125 | 360 |
Find 105 sgRNAs with CRISPR-Local
Find 350 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAGTAATTCTAGTCTTTAT+AGG | 0.167495 | 1_3:-4365692 | None:intergenic |
| TCTTGGGCTGACACTCTTCC+TGG | 0.222188 | 1_3:-4365600 | None:intergenic |
| AATGGGGAATATGATGAAAT+AGG | 0.227332 | 1_3:+4365809 | Msa0098430:three_prime_UTR |
| TACCATTGATGTATTAGTTT+TGG | 0.229701 | 1_3:-4364656 | None:intergenic |
| TCTTATCACCTATCCTGATT+TGG | 0.248488 | 1_3:+4362112 | Msa0098430:CDS |
| CTTATCACCTATCCTGATTT+GGG | 0.262260 | 1_3:+4362113 | Msa0098430:CDS |
| TCGCGGCGGTACTCAATTTC+CGG | 0.279806 | 1_3:+4363874 | Msa0098430:CDS |
| TGCCGTATGGTTGTAGATAA+TGG | 0.280783 | 1_3:+4365835 | Msa0098430:three_prime_UTR |
| CCTATAAAGACTAGAATTAC+TGG | 0.294839 | 1_3:+4365692 | Msa0098430:CDS |
| AAATATCGACAACGTGTTCT+TGG | 0.298043 | 1_3:+4363451 | Msa0098430:CDS |
| TCTGTCTCTGTTGCTGTGTA+TGG | 0.298337 | 1_3:+4362071 | Msa0098430:CDS |
| GATGGACTCAAGGGACTTCT+TGG | 0.315273 | 1_3:-4365617 | None:intergenic |
| ATGAAAACTTACAGCAAATA+AGG | 0.336620 | 1_3:-4363354 | None:intergenic |
| GAAATAAGAAATCAACAAAA+AGG | 0.341696 | 1_3:+4365866 | Msa0098430:three_prime_UTR |
| TGTCTAACTTTGTAGTGATA+TGG | 0.350373 | 1_3:-4365347 | None:intergenic |
| CTGTCTCTGTTGCTGTGTAT+GGG | 0.372972 | 1_3:+4362072 | Msa0098430:CDS |
| CTCAATCCTTCACTTAGGTC+AGG | 0.378178 | 1_3:-4365261 | None:intergenic |
| TTACAATTTAAACCCAAATC+AGG | 0.381571 | 1_3:-4362125 | None:intergenic |
| ATGGGGAATATGATGAAATA+GGG | 0.388273 | 1_3:+4365810 | Msa0098430:three_prime_UTR |
| ACAGATAGAACAGGATAATC+TGG | 0.390788 | 1_3:-4362982 | None:intergenic |
| GTTGTAGATAATGGGATATA+AGG | 0.397529 | 1_3:+4365844 | Msa0098430:three_prime_UTR |
| GAGTACTTTCTCATGGGATA+TGG | 0.412981 | 1_3:+4365563 | Msa0098430:CDS |
| GCCGTATGGTTGTAGATAAT+GGG | 0.419726 | 1_3:+4365836 | Msa0098430:three_prime_UTR |
| AATGTGCATTTGACTATGTT+GGG | 0.419747 | 1_3:+4364680 | Msa0098430:CDS |
| GATCGTGCTAAACGCCGCCC+TGG | 0.432409 | 1_3:+4364718 | Msa0098430:CDS |
| TGGAGTGCCTCTGAGTGATA+TGG | 0.433217 | 1_3:-4365327 | None:intergenic |
| TCTTAATGCAGTTATGTGTA+TGG | 0.436829 | 1_3:+4363304 | Msa0098430:CDS |
| GTTTCGTAAACAGATCTTAC+GGG | 0.440120 | 1_3:-4365764 | None:intergenic |
| TGGCATGTGTGGGGTGGTAA+AGG | 0.440330 | 1_3:+4363639 | Msa0098430:CDS |
| CTTCAAGAGCTATTGCAGTT+GGG | 0.452730 | 1_3:+4362943 | Msa0098430:intron |
| GATTGAGAAACCTACATTGC+CGG | 0.456707 | 1_3:+4365277 | Msa0098430:CDS |
| CATATCCACCGACACGGAAT+CGG | 0.467914 | 1_3:-4360669 | None:intergenic |
| TGTTTCGTAAACAGATCTTA+CGG | 0.475222 | 1_3:-4365765 | None:intergenic |
| CTCTATGTAAAGAACCATCT+TGG | 0.476906 | 1_3:+4363491 | Msa0098430:CDS |
| AATTTCAAACCCATACTCTC+AGG | 0.484626 | 1_3:-4365665 | None:intergenic |
| TCTTCAAGAGCTATTGCAGT+TGG | 0.485461 | 1_3:+4362942 | Msa0098430:intron |
| GGTTTCTCAATCCTTCACTT+AGG | 0.485709 | 1_3:-4365266 | None:intergenic |
| TGTTGCTGTGTATGGGGACC+AGG | 0.494219 | 1_3:+4362079 | Msa0098430:CDS |
| AAATTAGTGACCGGCAATGT+AGG | 0.494981 | 1_3:-4365287 | None:intergenic |
| ATGGTCTGTACAGGCCATCC+AGG | 0.495278 | 1_3:+4365582 | Msa0098430:CDS |
| TGATAAGAGCTGGTTTGTCC+TGG | 0.497015 | 1_3:-4362097 | None:intergenic |
| GGTTCAAGCATGCGGGTCAA+TGG | 0.498997 | 1_3:+4365502 | Msa0098430:intron |
| ATGGACTCAAGGGACTTCTT+GGG | 0.500002 | 1_3:-4365616 | None:intergenic |
| GAATGTGCATTTGACTATGT+TGG | 0.500060 | 1_3:+4364679 | Msa0098430:CDS |
| CTATAAAGACTAGAATTACT+GGG | 0.502276 | 1_3:+4365693 | Msa0098430:CDS |
| AAGTCATCTACAGATAGAAC+AGG | 0.502528 | 1_3:-4362991 | None:intergenic |
| CTATTTACATACCTCAACTA+AGG | 0.516795 | 1_3:-4365382 | None:intergenic |
| TGTGTATGGGAGTAACTGCT+GGG | 0.517895 | 1_3:+4363318 | Msa0098430:CDS |
| ATCGTGCTAAACGCCGCCCT+GGG | 0.517984 | 1_3:+4364719 | Msa0098430:CDS |
| ACCAATGGAGTACTTTCTCA+TGG | 0.518496 | 1_3:+4365556 | Msa0098430:CDS |
| TCATGGGATATGGTCTGTAC+AGG | 0.520593 | 1_3:+4365573 | Msa0098430:CDS |
| CCATGCCATGTTAATACCAA+TGG | 0.521144 | 1_3:+4365541 | Msa0098430:CDS |
| TCAATTTCCGGAGTCAGATA+TGG | 0.522791 | 1_3:+4363886 | Msa0098430:CDS |
| GGGCTGACACTCTTCCTGGA+TGG | 0.525781 | 1_3:-4365596 | None:intergenic |
| CATTGGTATTAACATGGCAT+GGG | 0.528281 | 1_3:-4365540 | None:intergenic |
| CAAGATGGTTCTTTACATAG+AGG | 0.528987 | 1_3:-4363490 | None:intergenic |
| ATGTGTATGGGAGTAACTGC+TGG | 0.530635 | 1_3:+4363317 | Msa0098430:CDS |
| TTCCAAAACTAATACATCAA+TGG | 0.530733 | 1_3:+4364654 | Msa0098430:CDS |
| CCATTGGTATTAACATGGCA+TGG | 0.534695 | 1_3:-4365541 | None:intergenic |
| CTTAATGCAGTTATGTGTAT+GGG | 0.543450 | 1_3:+4363305 | Msa0098430:CDS |
| TGTCTCTGTTGCTGTGTATG+GGG | 0.548337 | 1_3:+4362073 | Msa0098430:CDS |
| GATGAATAATGATGGTTGGT+TGG | 0.550240 | 1_3:+4365730 | Msa0098430:three_prime_UTR |
| TCAGGATAGGTGATAAGAGC+TGG | 0.553536 | 1_3:-4362107 | None:intergenic |
| AGCTCAGGAGAAATACAAGA+TGG | 0.560956 | 1_3:-4365635 | None:intergenic |
| CCCATGAGAAAGTACTCCAT+TGG | 0.566374 | 1_3:-4365557 | None:intergenic |
| TCTATCTGTAGATGACTTAG+CGG | 0.567432 | 1_3:+4362996 | Msa0098430:CDS |
| AGAAATACAAGATGGACTCA+AGG | 0.575493 | 1_3:-4365627 | None:intergenic |
| TTGTGGTGATAGGAAATTCG+CGG | 0.575563 | 1_3:+4363857 | Msa0098430:intron |
| ACGATTCAGTGCCTTAGTTG+AGG | 0.579061 | 1_3:+4365371 | Msa0098430:CDS |
| TAAAGGAAATATTGCTGAAG+CGG | 0.583967 | 1_3:+4363656 | Msa0098430:CDS |
| AATTACAGGTTCAAGCATGC+GGG | 0.584432 | 1_3:+4365495 | Msa0098430:intron |
| TCCCATTATCTACAACCATA+CGG | 0.588077 | 1_3:-4365837 | None:intergenic |
| GTCTGAGTGGTTGTACAACA+AGG | 0.588354 | 1_3:+4363513 | Msa0098430:CDS |
| ATTTAAACCCAAATCAGGAT+AGG | 0.588603 | 1_3:-4362120 | None:intergenic |
| TAATTACAGGTTCAAGCATG+CGG | 0.594019 | 1_3:+4365494 | Msa0098430:intron |
| CCAATGGAGTACTTTCTCAT+GGG | 0.603018 | 1_3:+4365557 | Msa0098430:CDS |
| GCTTTGACCATATCTGACTC+CGG | 0.603624 | 1_3:-4363893 | None:intergenic |
| AGGGCGGCGTTTAGCACGAT+CGG | 0.604367 | 1_3:-4364716 | None:intergenic |
| TTGCCCTTCGAAAATCATGT+TGG | 0.607164 | 1_3:+4364627 | Msa0098430:CDS |
| ATGAAATAGGGAGTGCCGTA+TGG | 0.610934 | 1_3:+4365822 | Msa0098430:three_prime_UTR |
| CATATTATCAGAACATGTCA+TGG | 0.611620 | 1_3:+4362047 | Msa0098430:CDS |
| TAGAAGTAGATGAATAATGA+TGG | 0.612606 | 1_3:+4365722 | Msa0098430:exon |
| ATATGGTCAAAGCATGCCGA+AGG | 0.615056 | 1_3:+4363903 | Msa0098430:CDS |
| GTACAATTGTAAAGCAAACA+TGG | 0.617571 | 1_3:+4366036 | Msa0098430:three_prime_UTR |
| AACACCTACCGATTCCGTGT+CGG | 0.622948 | 1_3:+4360661 | Msa0098430:CDS |
| AGTAGATGAATAATGATGGT+TGG | 0.627590 | 1_3:+4365726 | Msa0098430:three_prime_UTR |
| GAAATACAAGATGGACTCAA+GGG | 0.627901 | 1_3:-4365626 | None:intergenic |
| AGGAGACCTGACCTAAGTGA+AGG | 0.640781 | 1_3:+4365255 | Msa0098430:intron |
| TACAACCACTCAGACCAAGA+TGG | 0.652299 | 1_3:-4363505 | None:intergenic |
| ATTGGTATTAACATGGCATG+GGG | 0.665921 | 1_3:-4365539 | None:intergenic |
| ATGTGCATTTGACTATGTTG+GGG | 0.673680 | 1_3:+4364681 | Msa0098430:CDS |
| TCCACCGACACGGAATCGGT+AGG | 0.676389 | 1_3:-4360665 | None:intergenic |
| GTACTCCATTGGTATTAACA+TGG | 0.679020 | 1_3:-4365546 | None:intergenic |
| TATGGTCAAAGCATGCCGAA+GGG | 0.679949 | 1_3:+4363904 | Msa0098430:CDS |
| ATGCGGGTCAATGGTAACAG+AGG | 0.682086 | 1_3:+4365511 | Msa0098430:CDS |
| GTGTATGGGAGTAACTGCTG+GGG | 0.683228 | 1_3:+4363319 | Msa0098430:CDS |
| TATAAAGACTAGAATTACTG+GGG | 0.686762 | 1_3:+4365694 | Msa0098430:CDS |
| TTTCGTAAACAGATCTTACG+GGG | 0.688716 | 1_3:-4365763 | None:intergenic |
| GGAATCCATATCCACCGACA+CGG | 0.704292 | 1_3:-4360675 | None:intergenic |
| CTTAGCGGATCAAATAGCTG+AGG | 0.709294 | 1_3:+4363011 | Msa0098430:CDS |
| AAGAACCATCTTGGTCTGAG+TGG | 0.713563 | 1_3:+4363500 | Msa0098430:CDS |
| TATGTCTCCATATCACTCAG+AGG | 0.729931 | 1_3:+4365320 | Msa0098430:CDS |
| GCAACAGGTAAAACCCAGGG+CGG | 0.730701 | 1_3:-4364732 | None:intergenic |
| TGGTGATAGGAAATTCGCGG+CGG | 0.758251 | 1_3:+4363860 | Msa0098430:intron |
| CAATTGTAAAGCAAACATGG+AGG | 0.793931 | 1_3:+4366039 | Msa0098430:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAATTTTATTTGCTAAAA+AGG | + | chr1_3:4361410-4361429 | Msa0098430:intron | 10.0% |
| !!! | AAATGAAAATTATTTTACTT+AGG | - | chr1_3:4361576-4361595 | None:intergenic | 10.0% |
| !! | TATGTGTTCATTTATTTATT+TGG | + | chr1_3:4360810-4360829 | Msa0098430:intron | 15.0% |
| !!! | TAGCAAATAAAATTTTACTA+GGG | - | chr1_3:4361407-4361426 | None:intergenic | 15.0% |
| !!! | TTAGCAAATAAAATTTTACT+AGG | - | chr1_3:4361408-4361427 | None:intergenic | 15.0% |
| !!! | TTCTTTGTATAAAACATTTT+AGG | - | chr1_3:4362409-4362428 | None:intergenic | 15.0% |
| !! | TGTCAGTTATAAATAAAATA+AGG | - | chr1_3:4362674-4362693 | None:intergenic | 15.0% |
| !! | TAAGTAAATTAAAGTCATTT+GGG | - | chr1_3:4363401-4363420 | None:intergenic | 15.0% |
| !! | TTAAGTAAATTAAAGTCATT+TGG | - | chr1_3:4363402-4363421 | None:intergenic | 15.0% |
| !!! | NNNTCATTTACTTTTATTTG+TGG | + | chr1_3:4363840-4363859 | Msa0098430:intron | 15.0% |
| !!! | AACATATTTTATTTTCATGT+AGG | + | chr1_3:4363933-4363952 | Msa0098430:intron | 15.0% |
| !!! | ACATATTTTATTTTCATGTA+GGG | + | chr1_3:4363934-4363953 | Msa0098430:intron | 15.0% |
| !! | ATGCCTTTATATTAAATAAT+TGG | + | chr1_3:4364286-4364305 | Msa0098430:intron | 15.0% |
| !! | TTGCCAATTATTTAATATAA+AGG | - | chr1_3:4364292-4364311 | None:intergenic | 15.0% |
| !!! | TAATTAATTTTTGACAATGT+TGG | - | chr1_3:4364505-4364524 | None:intergenic | 15.0% |
| !! | ACTTAAATTCAATATGTTTA+GGG | + | chr1_3:4365163-4365182 | Msa0098430:intron | 15.0% |
| !! | ATCACAAAGTTAAATAAAAA+TGG | - | chr1_3:4365225-4365244 | None:intergenic | 15.0% |
| !!! | ATTTTTATTTAACTTTGTGA+TGG | + | chr1_3:4365224-4365243 | Msa0098430:intron | 15.0% |
| !!! | TTTCTATTTTATTTTGCTAA+AGG | + | chr1_3:4366004-4366023 | Msa0098430:three_prime_UTR | 15.0% |
| !!! | TACATTTGGTTGATTTTTAA+CGG | + | chr1_3:4361004-4361023 | Msa0098430:intron | 20.0% |
| !!! | AGTTTGTGTTATATTACTTT+TGG | + | chr1_3:4361124-4361143 | Msa0098430:intron | 20.0% |
| !!! | TAAAATTTTACTAGGGTATA+GGG | - | chr1_3:4361400-4361419 | None:intergenic | 20.0% |
| !!! | ATAAAATTTTACTAGGGTAT+AGG | - | chr1_3:4361401-4361420 | None:intergenic | 20.0% |
| !! | GAAGCCAAAAAAAAAAAAAT+CGG | - | chr1_3:4361797-4361816 | None:intergenic | 20.0% |
| !!! | AAAATAATGGAAAAAGTCAA+GGG | - | chr1_3:4362180-4362199 | None:intergenic | 20.0% |
| !!! | AAAAATAATGGAAAAAGTCA+AGG | - | chr1_3:4362181-4362200 | None:intergenic | 20.0% |
| !! | AGAAAAGAAATACTTTAATG+AGG | - | chr1_3:4362367-4362386 | None:intergenic | 20.0% |
| !!! | TCTTGGCATTATTTATTTTA+TGG | + | chr1_3:4362477-4362496 | Msa0098430:intron | 20.0% |
| !!! | CTTGGCATTATTTATTTTAT+GGG | + | chr1_3:4362478-4362497 | Msa0098430:intron | 20.0% |
| !!! | AAGACAGAAAATTCTATTTT+TGG | - | chr1_3:4362542-4362561 | None:intergenic | 20.0% |
| !!! | AAAAATAGAATTTTCTGTCT+TGG | + | chr1_3:4362541-4362560 | Msa0098430:intron | 20.0% |
| !!! | TAACAAAAACTTACTTCTTT+TGG | + | chr1_3:4362610-4362629 | Msa0098430:intron | 20.0% |
| !!! | AGTCTAATTTTTTCTTTTCA+TGG | + | chr1_3:4362693-4362712 | Msa0098430:intron | 20.0% |
| !! | TATAGATATTCATAACAGTA+AGG | - | chr1_3:4362876-4362895 | None:intergenic | 20.0% |
| !!! | TCAAATTTACTGTACTTTTA+TGG | + | chr1_3:4363619-4363638 | Msa0098430:CDS | 20.0% |
| !! | TGATAAATTACTGAATTACT+GGG | - | chr1_3:4364052-4364071 | None:intergenic | 20.0% |
| !! | ATGATAAATTACTGAATTAC+TGG | - | chr1_3:4364053-4364072 | None:intergenic | 20.0% |
| !!! | ATTGATATTTTTGGACATTA+TGG | + | chr1_3:4364118-4364137 | Msa0098430:intron | 20.0% |
| !! | CATCTAATAAGGAAAAAATT+GGG | - | chr1_3:4364234-4364253 | None:intergenic | 20.0% |
| !! | TCATCTAATAAGGAAAAAAT+TGG | - | chr1_3:4364235-4364254 | None:intergenic | 20.0% |
| !!! | TTTCAACTCATTTTACAATT+AGG | + | chr1_3:4364604-4364623 | Msa0098430:intron | 20.0% |
| !! | TAATAAATATATCAAGAGTC+AGG | - | chr1_3:4364785-4364804 | None:intergenic | 20.0% |
| !! | GATATATTTATTACAGTCTT+TGG | + | chr1_3:4364792-4364811 | Msa0098430:intron | 20.0% |
| !!! | TGATTTTCATTTTCTTTTTG+AGG | + | chr1_3:4364989-4365008 | Msa0098430:intron | 20.0% |
| !!! | GATTTTCATTTTCTTTTTGA+GGG | + | chr1_3:4364990-4365009 | Msa0098430:intron | 20.0% |
| !! | CACTTAAATTCAATATGTTT+AGG | + | chr1_3:4365162-4365181 | Msa0098430:intron | 20.0% |
| !!! | TCATTTTTCTATGATTAGAA+TGG | + | chr1_3:4365791-4365810 | Msa0098430:three_prime_UTR | 20.0% |
| !!! | CATTTTTCTATGATTAGAAT+GGG | + | chr1_3:4365792-4365811 | Msa0098430:three_prime_UTR | 20.0% |
| !!! | ATTTTTCTATGATTAGAATG+GGG | + | chr1_3:4365793-4365812 | Msa0098430:three_prime_UTR | 20.0% |
| !! | GAAATAAGAAATCAACAAAA+AGG | + | chr1_3:4365866-4365885 | Msa0098430:three_prime_UTR | 20.0% |
| !!! | TCACAGTCTATATATTTTAT+TGG | + | chr1_3:4366118-4366137 | Msa0098430:three_prime_UTR | 20.0% |
| ! | TGAACTAATGATTCTACATT+TGG | + | chr1_3:4360990-4361009 | Msa0098430:intron | 25.0% |
| !!! | TATAGCTACTAGTTTAGTTT+TGG | + | chr1_3:4361047-4361066 | Msa0098430:intron | 25.0% |
| ! | CTTTGTAATAGATAATAGTG+TGG | + | chr1_3:4361179-4361198 | Msa0098430:intron | 25.0% |
| !! | AAACCTTTTATTAAAACCCT+AGG | + | chr1_3:4361550-4361569 | Msa0098430:intron | 25.0% |
| !!! | AATTATTTTACTTAGGCCTA+GGG | - | chr1_3:4361569-4361588 | None:intergenic | 25.0% |
| !!! | AAATTATTTTACTTAGGCCT+AGG | - | chr1_3:4361570-4361589 | None:intergenic | 25.0% |
| ! | TAAAGATATAGCATTTGAAG+AGG | - | chr1_3:4361608-4361627 | None:intergenic | 25.0% |
| ! | AAAATGTGCAGAAATGATTT+AGG | + | chr1_3:4361742-4361761 | Msa0098430:intron | 25.0% |
| ! | AAATGTGCAGAAATGATTTA+GGG | + | chr1_3:4361743-4361762 | Msa0098430:intron | 25.0% |
| !!! | ACGTCCGATTTTTTTTTTTT+TGG | + | chr1_3:4361790-4361809 | Msa0098430:intron | 25.0% |
| ! | ATAGCATCTCAAATTTATGT+TGG | - | chr1_3:4361873-4361892 | None:intergenic | 25.0% |
| ! | TTACAATTTAAACCCAAATC+AGG | - | chr1_3:4362128-4362147 | None:intergenic | 25.0% |
| ! | GGTTTAAATTGTAAGTAAAC+TGG | + | chr1_3:4362134-4362153 | Msa0098430:intron | 25.0% |
| !!! | TTCCATTATTTTTGTACTAC+AGG | + | chr1_3:4362188-4362207 | Msa0098430:intron | 25.0% |
| !!! | TCCATTATTTTTGTACTACA+GGG | + | chr1_3:4362189-4362208 | Msa0098430:intron | 25.0% |
| ! | TTGTCAAAACTAAATGTACT+GGG | - | chr1_3:4362280-4362299 | None:intergenic | 25.0% |
| ! | TTTGTCAAAACTAAATGTAC+TGG | - | chr1_3:4362281-4362300 | None:intergenic | 25.0% |
| !! | GGAAATGAAACGTATATTTT+AGG | - | chr1_3:4362346-4362365 | None:intergenic | 25.0% |
| ! | TGTGATATATGCAAAAATTG+TGG | - | chr1_3:4362797-4362816 | None:intergenic | 25.0% |
| ! | TTGAATGCTTATAATTTACC+TGG | + | chr1_3:4362899-4362918 | Msa0098430:intron | 25.0% |
| ! | ATGAAAACTTACAGCAAATA+AGG | - | chr1_3:4363357-4363376 | None:intergenic | 25.0% |
| ! | AAAGAATTTGTGATATTTGC+AGG | + | chr1_3:4363591-4363610 | Msa0098430:intron | 25.0% |
| !!! | TTACTTTTATTTGTGGTGAT+AGG | + | chr1_3:4363847-4363866 | Msa0098430:intron | 25.0% |
| ! | CCAAAAATATCAATTGCTTT+GGG | - | chr1_3:4364112-4364131 | None:intergenic | 25.0% |
| ! | TCCAAAAATATCAATTGCTT+TGG | - | chr1_3:4364113-4364132 | None:intergenic | 25.0% |
| ! | TTAAATCTTCAATGCATGTA+CGG | + | chr1_3:4364416-4364435 | Msa0098430:intron | 25.0% |
| !! | TTTTTAATCCAAATGTCTCT+AGG | + | chr1_3:4364555-4364574 | Msa0098430:intron | 25.0% |
| ! | CTGAATGCTTATTTATTGAA+TGG | - | chr1_3:4364583-4364602 | None:intergenic | 25.0% |
| ! | TTCCAAAACTAATACATCAA+TGG | + | chr1_3:4364654-4364673 | Msa0098430:CDS | 25.0% |
| !!! | TACCATTGATGTATTAGTTT+TGG | - | chr1_3:4364659-4364678 | None:intergenic | 25.0% |
| ! | ATCATATATACTTGTATGCA+TGG | + | chr1_3:4365094-4365113 | Msa0098430:intron | 25.0% |
| ! | TTTGCATCAAAATTCAAAAC+AGG | - | chr1_3:4365131-4365150 | None:intergenic | 25.0% |
| ! | CTATAAAGACTAGAATTACT+GGG | + | chr1_3:4365693-4365712 | Msa0098430:CDS | 25.0% |
| ! | TATAAAGACTAGAATTACTG+GGG | + | chr1_3:4365694-4365713 | Msa0098430:CDS | 25.0% |
| ! | TAGAAGTAGATGAATAATGA+TGG | + | chr1_3:4365722-4365741 | Msa0098430:exon | 25.0% |
| ! | ATCAACAAAAAGGAAAGAAA+AGG | + | chr1_3:4365876-4365895 | Msa0098430:three_prime_UTR | 25.0% |
| !!! | ACAACAACTTTTTCAAAGTA+GGG | - | chr1_3:4366080-4366099 | None:intergenic | 25.0% |
| !! | TACTTTGAAAAAGTTGTTGT+CGG | + | chr1_3:4366080-4366099 | Msa0098430:three_prime_UTR | 25.0% |
| ACGATGAATATGAAGAATGT+AGG | - | chr1_3:4360738-4360757 | None:intergenic | 30.0% | |
| GAAGCTTGATGTAAATGATT+TGG | + | chr1_3:4360956-4360975 | Msa0098430:intron | 30.0% | |
| ! | TACTTTTGGATGAATTCAAG+AGG | + | chr1_3:4361138-4361157 | Msa0098430:intron | 30.0% |
| !!! | TGGCTATACAAGGTTTTAAA+TGG | + | chr1_3:4361199-4361218 | Msa0098430:intron | 30.0% |
| CTTATTGTGATTACAGAGAA+CGG | + | chr1_3:4361454-4361473 | Msa0098430:intron | 30.0% | |
| !! | GCAAAGGCATTAAAAAAACA+TGG | + | chr1_3:4361503-4361522 | Msa0098430:intron | 30.0% |
| !! | ATCTTTATCTCCGTTTTGAA+TGG | + | chr1_3:4361621-4361640 | Msa0098430:intron | 30.0% |
| AGAAGCAATTCATAACATGA+AGG | - | chr1_3:4361653-4361672 | None:intergenic | 30.0% | |
| !! | ATTTAGGGTTTCCATGTTTT+AGG | + | chr1_3:4361758-4361777 | Msa0098430:intron | 30.0% |
| AAAAAAAAAATCGGACGTTG+AGG | - | chr1_3:4361788-4361807 | None:intergenic | 30.0% | |
| CATATTATCAGAACATGTCA+TGG | + | chr1_3:4362047-4362066 | Msa0098430:CDS | 30.0% | |
| ATTTAAACCCAAATCAGGAT+AGG | - | chr1_3:4362123-4362142 | None:intergenic | 30.0% | |
| !! | TTTTAGGAGCAAATCTTGAT+GGG | - | chr1_3:4362393-4362412 | None:intergenic | 30.0% |
| !! | ATTTTAGGAGCAAATCTTGA+TGG | - | chr1_3:4362394-4362413 | None:intergenic | 30.0% |
| !!! | CAAATCTAAATGTCGTTTTG+TGG | + | chr1_3:4362432-4362451 | Msa0098430:intron | 30.0% |
| !!! | TGTCGTTTTGTGGATTTTAT+CGG | + | chr1_3:4362442-4362461 | Msa0098430:intron | 30.0% |
| ATCGGAAATGTTTACTTTCT+TGG | + | chr1_3:4362460-4362479 | Msa0098430:intron | 30.0% | |
| ! | TTTTCATGGACATGATATTG+CGG | + | chr1_3:4362707-4362726 | Msa0098430:intron | 30.0% |
| AATTACTTCGTGACACTAAA+TGG | - | chr1_3:4363087-4363106 | None:intergenic | 30.0% | |
| !! | CTCTATCTGGCTTTAAATAT+TGG | + | chr1_3:4363120-4363139 | Msa0098430:intron | 30.0% |
| AAAAAAAAAGAAGAGCAGCA+GGG | - | chr1_3:4363281-4363300 | None:intergenic | 30.0% | |
| TCTTAATGCAGTTATGTGTA+TGG | + | chr1_3:4363304-4363323 | Msa0098430:CDS | 30.0% | |
| CTTAATGCAGTTATGTGTAT+GGG | + | chr1_3:4363305-4363324 | Msa0098430:CDS | 30.0% | |
| ! | TTTTACGAGACATGATGTTT+CGG | - | chr1_3:4363552-4363571 | None:intergenic | 30.0% |
| TAAAGGAAATATTGCTGAAG+CGG | + | chr1_3:4363656-4363675 | Msa0098430:CDS | 30.0% | |
| CTAACACTGAAAATAGAACA+AGG | - | chr1_3:4363717-4363736 | None:intergenic | 30.0% | |
| ! | CTTGTTCTATTTTCAGTGTT+AGG | + | chr1_3:4363715-4363734 | Msa0098430:intron | 30.0% |
| ! | AAATATGTTGACTAACCCTT+CGG | - | chr1_3:4363922-4363941 | None:intergenic | 30.0% |
| !!! | TTTTATTTTCATGTAGGGAC+TGG | + | chr1_3:4363939-4363958 | Msa0098430:intron | 30.0% |
| !! | TTTATTTTCATGTAGGGACT+GGG | + | chr1_3:4363940-4363959 | Msa0098430:intron | 30.0% |
| GTTTAAGTGGCATTTAACAT+GGG | + | chr1_3:4363962-4363981 | Msa0098430:intron | 30.0% | |
| AAATTACTGAATTACTGGGT+GGG | - | chr1_3:4364048-4364067 | None:intergenic | 30.0% | |
| TAAATTACTGAATTACTGGG+TGG | - | chr1_3:4364049-4364068 | None:intergenic | 30.0% | |
| ATGATGTCTTCTTGATACTT+CGG | - | chr1_3:4364082-4364101 | None:intergenic | 30.0% | |
| ! | CCCAAAGCAATTGATATTTT+TGG | + | chr1_3:4364109-4364128 | Msa0098430:intron | 30.0% |
| GAAAAAATTGGGATGAAGAA+AGG | - | chr1_3:4364223-4364242 | None:intergenic | 30.0% | |
| AATGTGCATTTGACTATGTT+GGG | + | chr1_3:4364680-4364699 | Msa0098430:CDS | 30.0% | |
| ! | GGTATGATATTTTACTTCCA+AGG | + | chr1_3:4364963-4364982 | Msa0098430:intron | 30.0% |
| GAAAATGAAAATCACAACCT+TGG | - | chr1_3:4364983-4365002 | None:intergenic | 30.0% | |
| !! | TTTCATTTTCTTTTTGAGGG+TGG | + | chr1_3:4364993-4365012 | Msa0098430:intron | 30.0% |
| !! | TTCATTTTCTTTTTGAGGGT+GGG | + | chr1_3:4364994-4365013 | Msa0098430:intron | 30.0% |
| CAACATGTTAGTTATTGCTA+AGG | + | chr1_3:4365049-4365068 | Msa0098430:intron | 30.0% | |
| TGTCTAACTTTGTAGTGATA+TGG | - | chr1_3:4365350-4365369 | None:intergenic | 30.0% | |
| CTATTTACATACCTCAACTA+AGG | - | chr1_3:4365385-4365404 | None:intergenic | 30.0% | |
| ! | CCAGTAATTCTAGTCTTTAT+AGG | - | chr1_3:4365695-4365714 | None:intergenic | 30.0% |
| CCTATAAAGACTAGAATTAC+TGG | + | chr1_3:4365692-4365711 | Msa0098430:CDS | 30.0% | |
| AGTAGATGAATAATGATGGT+TGG | + | chr1_3:4365726-4365745 | Msa0098430:three_prime_UTR | 30.0% | |
| TGTTTCGTAAACAGATCTTA+CGG | - | chr1_3:4365768-4365787 | None:intergenic | 30.0% | |
| AATGGGGAATATGATGAAAT+AGG | + | chr1_3:4365809-4365828 | Msa0098430:three_prime_UTR | 30.0% | |
| ATGGGGAATATGATGAAATA+GGG | + | chr1_3:4365810-4365829 | Msa0098430:three_prime_UTR | 30.0% | |
| !! | GTTGTAGATAATGGGATATA+AGG | + | chr1_3:4365844-4365863 | Msa0098430:three_prime_UTR | 30.0% |
| GTACAATTGTAAAGCAAACA+TGG | + | chr1_3:4366036-4366055 | Msa0098430:three_prime_UTR | 30.0% | |
| !!! | CAACAACTTTTTCAAAGTAG+GGG | - | chr1_3:4366079-4366098 | None:intergenic | 30.0% |
| !!! | GACAACAACTTTTTCAAAGT+AGG | - | chr1_3:4366081-4366100 | None:intergenic | 30.0% |
| GATAGAACGAAAAATGCCTT+AGG | - | chr1_3:4360713-4360732 | None:intergenic | 35.0% | |
| TTTGGATGAATTCAAGAGGT+AGG | + | chr1_3:4361142-4361161 | Msa0098430:intron | 35.0% | |
| GATAATAGTGTGGCTATACA+AGG | + | chr1_3:4361189-4361208 | Msa0098430:intron | 35.0% | |
| CATCGAAAATCTTGATGTTG+TGG | + | chr1_3:4361333-4361352 | Msa0098430:intron | 35.0% | |
| AAGATTTGTGACCACATTCT+AGG | - | chr1_3:4361362-4361381 | None:intergenic | 35.0% | |
| !! | TGCTAAAAAGGTATCTCTTC+AGG | + | chr1_3:4361422-4361441 | Msa0098430:intron | 35.0% |
| !! | AGGCCTAGGGTTTTAATAAA+AGG | - | chr1_3:4361556-4361575 | None:intergenic | 35.0% |
| !! | TATCTCCGTTTTGAATGGTT+TGG | + | chr1_3:4361626-4361645 | Msa0098430:intron | 35.0% |
| AAGGTCCAAACCATTCAAAA+CGG | - | chr1_3:4361634-4361653 | None:intergenic | 35.0% | |
| GTTGAGGAAAACCTAAAACA+TGG | - | chr1_3:4361772-4361791 | None:intergenic | 35.0% | |
| GCTTTGTCACAAAAGTTCAA+AGG | - | chr1_3:4361819-4361838 | None:intergenic | 35.0% | |
| ! | CTTTTGTGACAAAGCTTGAA+TGG | + | chr1_3:4361824-4361843 | Msa0098430:intron | 35.0% |
| AATCCGTAGCAAGTTATTGT+CGG | + | chr1_3:4361964-4361983 | Msa0098430:intron | 35.0% | |
| !! | AATCCGACAATAACTTGCTA+CGG | - | chr1_3:4361970-4361989 | None:intergenic | 35.0% |
| TAGCAAGTTATTGTCGGATT+TGG | + | chr1_3:4361970-4361989 | Msa0098430:intron | 35.0% | |
| TCTTATCACCTATCCTGATT+TGG | + | chr1_3:4362112-4362131 | Msa0098430:CDS | 35.0% | |
| CTTATCACCTATCCTGATTT+GGG | + | chr1_3:4362113-4362132 | Msa0098430:CDS | 35.0% | |
| GCCCTGTAGTACAAAAATAA+TGG | - | chr1_3:4362193-4362212 | None:intergenic | 35.0% | |
| AAATAATAACCCCTGAAAGC+AGG | - | chr1_3:4362748-4362767 | None:intergenic | 35.0% | |
| ATATATCACATTAGTCCACC+TGG | + | chr1_3:4362807-4362826 | Msa0098430:intron | 35.0% | |
| TATATCACATTAGTCCACCT+GGG | + | chr1_3:4362808-4362827 | Msa0098430:intron | 35.0% | |
| ACAGATAGAACAGGATAATC+TGG | - | chr1_3:4362985-4363004 | None:intergenic | 35.0% | |
| AAGTCATCTACAGATAGAAC+AGG | - | chr1_3:4362994-4363013 | None:intergenic | 35.0% | |
| TCTATCTGTAGATGACTTAG+CGG | + | chr1_3:4362996-4363015 | Msa0098430:CDS | 35.0% | |
| !!! | CTGAGGTGCTTAACTTTTTT+GGG | + | chr1_3:4363028-4363047 | Msa0098430:CDS | 35.0% |
| ! | ATTTGAAGCTCCTTCTGTAA+TGG | + | chr1_3:4363173-4363192 | Msa0098430:intron | 35.0% |
| TTCAATCTGTCCATTACAGA+AGG | - | chr1_3:4363186-4363205 | None:intergenic | 35.0% | |
| AATGGACAGATTGAAAGTGA+CGG | + | chr1_3:4363191-4363210 | Msa0098430:intron | 35.0% | |
| GAAAAAAAAAGAAGAGCAGC+AGG | - | chr1_3:4363282-4363301 | None:intergenic | 35.0% | |
| AAATATCGACAACGTGTTCT+TGG | + | chr1_3:4363451-4363470 | Msa0098430:CDS | 35.0% | |
| CAAGATGGTTCTTTACATAG+AGG | - | chr1_3:4363493-4363512 | None:intergenic | 35.0% | |
| CTCTATGTAAAGAACCATCT+TGG | + | chr1_3:4363491-4363510 | Msa0098430:CDS | 35.0% | |
| ATGATGTTTCGGCAAAGAAA+AGG | - | chr1_3:4363541-4363560 | None:intergenic | 35.0% | |
| ! | TGTACTTTTATGGCATGTGT+GGG | + | chr1_3:4363629-4363648 | Msa0098430:CDS | 35.0% |
| GGTTTAAGTGGCATTTAACA+TGG | + | chr1_3:4363961-4363980 | Msa0098430:intron | 35.0% | |
| TGATGTCTTCTTGATACTTC+GGG | - | chr1_3:4364081-4364100 | None:intergenic | 35.0% | |
| CAAGTGATGCTCATCTAATA+AGG | - | chr1_3:4364245-4364264 | None:intergenic | 35.0% | |
| CTTGCTTAAAATCTGTTCAC+TGG | + | chr1_3:4364460-4364479 | Msa0098430:intron | 35.0% | |
| ACAATGTTGGTCAAGTCAAT+TGG | - | chr1_3:4364492-4364511 | None:intergenic | 35.0% | |
| ! | CAACCAACATGATTTTCGAA+GGG | - | chr1_3:4364633-4364652 | None:intergenic | 35.0% |
| ! | TCAACCAACATGATTTTCGA+AGG | - | chr1_3:4364634-4364653 | None:intergenic | 35.0% |
| GAATGTGCATTTGACTATGT+TGG | + | chr1_3:4364679-4364698 | Msa0098430:CDS | 35.0% | |
| ATGTGCATTTGACTATGTTG+GGG | + | chr1_3:4364681-4364700 | Msa0098430:CDS | 35.0% | |
| AATATATCAAGAGTCAGGCA+AGG | - | chr1_3:4364780-4364799 | None:intergenic | 35.0% | |
| CATACCCATTAATAGCTTCA+AGG | - | chr1_3:4364949-4364968 | None:intergenic | 35.0% | |
| !! | TCATTTTCTTTTTGAGGGTG+GGG | + | chr1_3:4364995-4365014 | Msa0098430:intron | 35.0% |
| ! | ACTGTAATGTCATGTTGCTT+AGG | + | chr1_3:4365191-4365210 | Msa0098430:intron | 35.0% |
| ! | CTGTAATGTCATGTTGCTTA+GGG | + | chr1_3:4365192-4365211 | Msa0098430:intron | 35.0% |
| ACTTTGTGATGGCATATTAC+AGG | + | chr1_3:4365235-4365254 | Msa0098430:intron | 35.0% | |
| CATTCTCAACACATAGTAAC+AGG | - | chr1_3:4365416-4365435 | None:intergenic | 35.0% | |
| TAATTACAGGTTCAAGCATG+CGG | + | chr1_3:4365494-4365513 | Msa0098430:intron | 35.0% | |
| ATTGGTATTAACATGGCATG+GGG | - | chr1_3:4365542-4365561 | None:intergenic | 35.0% | |
| CATTGGTATTAACATGGCAT+GGG | - | chr1_3:4365543-4365562 | None:intergenic | 35.0% | |
| GTACTCCATTGGTATTAACA+TGG | - | chr1_3:4365549-4365568 | None:intergenic | 35.0% | |
| ! | GAAATACAAGATGGACTCAA+GGG | - | chr1_3:4365629-4365648 | None:intergenic | 35.0% |
| ! | AGAAATACAAGATGGACTCA+AGG | - | chr1_3:4365630-4365649 | None:intergenic | 35.0% |
| !!! | CTTTTTTCACCTGAGAGTAT+GGG | + | chr1_3:4365656-4365675 | Msa0098430:CDS | 35.0% |
| AATTTCAAACCCATACTCTC+AGG | - | chr1_3:4365668-4365687 | None:intergenic | 35.0% | |
| GATGAATAATGATGGTTGGT+TGG | + | chr1_3:4365730-4365749 | Msa0098430:three_prime_UTR | 35.0% | |
| TTTCGTAAACAGATCTTACG+GGG | - | chr1_3:4365766-4365785 | None:intergenic | 35.0% | |
| GTTTCGTAAACAGATCTTAC+GGG | - | chr1_3:4365767-4365786 | None:intergenic | 35.0% | |
| TCCCATTATCTACAACCATA+CGG | - | chr1_3:4365840-4365859 | None:intergenic | 35.0% | |
| CAATTGTAAAGCAAACATGG+AGG | + | chr1_3:4366039-4366058 | Msa0098430:three_prime_UTR | 35.0% | |
| ACGAAAAATGCCTTAGGTGA+AGG | - | chr1_3:4360707-4360726 | None:intergenic | 40.0% | |
| ! | CTTTGATAGTAGCTGTGTTG+CGG | + | chr1_3:4361301-4361320 | Msa0098430:intron | 40.0% |
| CGAAAATCTTGATGTTGTGG+TGG | + | chr1_3:4361336-4361355 | Msa0098430:intron | 40.0% | |
| ATTGTGATTACAGAGAACGG+CGG | + | chr1_3:4361457-4361476 | Msa0098430:intron | 40.0% | |
| ACTTCCATTTCGTGTGTTGA+AGG | + | chr1_3:4361682-4361701 | Msa0098430:intron | 40.0% | |
| ACTTCCTTCAACACACGAAA+TGG | - | chr1_3:4361689-4361708 | None:intergenic | 40.0% | |
| GAAAAACAAACGAGCGAATC+AGG | - | chr1_3:4361910-4361929 | None:intergenic | 40.0% | |
| TGCTACTGATATGTATCTGC+AGG | + | chr1_3:4362022-4362041 | Msa0098430:intron | 40.0% | |
| AGCAGCAAGTAATATGCTTC+TGG | - | chr1_3:4362774-4362793 | None:intergenic | 40.0% | |
| TCTTCAAGAGCTATTGCAGT+TGG | + | chr1_3:4362942-4362961 | Msa0098430:intron | 40.0% | |
| CTTCAAGAGCTATTGCAGTT+GGG | + | chr1_3:4362943-4362962 | Msa0098430:intron | 40.0% | |
| !!! | GCTGAGGTGCTTAACTTTTT+TGG | + | chr1_3:4363027-4363046 | Msa0098430:CDS | 40.0% |
| !! | GCTTTGAAGCTATCTCTATC+TGG | + | chr1_3:4363107-4363126 | Msa0098430:intron | 40.0% |
| ! | ATTTTTCCTTCCCCACATCA+TGG | + | chr1_3:4363248-4363267 | Msa0098430:intron | 40.0% |
| ! | TTTTTCCTTCCCCACATCAT+GGG | + | chr1_3:4363249-4363268 | Msa0098430:intron | 40.0% |
| TAAAGTCATTTGGGAGAGAG+AGG | - | chr1_3:4363392-4363411 | None:intergenic | 40.0% | |
| ! | CTGTACTTTTATGGCATGTG+TGG | + | chr1_3:4363628-4363647 | Msa0098430:CDS | 40.0% |
| ! | GTACTTTTATGGCATGTGTG+GGG | + | chr1_3:4363630-4363649 | Msa0098430:CDS | 40.0% |
| TTGTGGTGATAGGAAATTCG+CGG | + | chr1_3:4363857-4363876 | Msa0098430:intron | 40.0% | |
| TCAATTTCCGGAGTCAGATA+TGG | + | chr1_3:4363886-4363905 | Msa0098430:CDS | 40.0% | |
| GTGGGATTGGATAATAATGC+AGG | - | chr1_3:4364030-4364049 | None:intergenic | 40.0% | |
| AAAGCGGTAAAATGAGGAAC+TGG | - | chr1_3:4364144-4364163 | None:intergenic | 40.0% | |
| !! | TCCTCATTTTACCGCTTTTC+TGG | + | chr1_3:4364146-4364165 | Msa0098430:intron | 40.0% |
| !! | CCTCATTTTACCGCTTTTCT+GGG | + | chr1_3:4364147-4364166 | Msa0098430:intron | 40.0% |
| !! | TTTTTCGGTTCCCAGAAAAG+CGG | - | chr1_3:4364160-4364179 | None:intergenic | 40.0% |
| ! | GACAAGCAGACAAGCTTTTT+CGG | - | chr1_3:4364175-4364194 | None:intergenic | 40.0% |
| AATCTTCAATGCATGTACGG+TGG | + | chr1_3:4364419-4364438 | Msa0098430:intron | 40.0% | |
| GAATGGAACCTAGAGACATT+TGG | - | chr1_3:4364566-4364585 | None:intergenic | 40.0% | |
| TTGCCCTTCGAAAATCATGT+TGG | + | chr1_3:4364627-4364646 | Msa0098430:CDS | 40.0% | |
| AGAGACAAAGCTTGAATGTG+TGG | + | chr1_3:4364818-4364837 | Msa0098430:intron | 40.0% | |
| GGTTTCTCAATCCTTCACTT+AGG | - | chr1_3:4365269-4365288 | None:intergenic | 40.0% | |
| GATTGAGAAACCTACATTGC+CGG | + | chr1_3:4365277-4365296 | Msa0098430:CDS | 40.0% | |
| AAATTAGTGACCGGCAATGT+AGG | - | chr1_3:4365290-4365309 | None:intergenic | 40.0% | |
| ! | TGCCGGTCACTAATTTTTGT+TGG | + | chr1_3:4365294-4365313 | Msa0098430:CDS | 40.0% |
| ! | GCCGGTCACTAATTTTTGTT+GGG | + | chr1_3:4365295-4365314 | Msa0098430:CDS | 40.0% |
| CCCCAACAAAAATTAGTGAC+CGG | - | chr1_3:4365299-4365318 | None:intergenic | 40.0% | |
| ! | CCGGTCACTAATTTTTGTTG+GGG | + | chr1_3:4365296-4365315 | Msa0098430:CDS | 40.0% |
| TATGTCTCCATATCACTCAG+AGG | + | chr1_3:4365320-4365339 | Msa0098430:CDS | 40.0% | |
| AGCTGTTGTCGTGTAATTAC+AGG | + | chr1_3:4365481-4365500 | Msa0098430:intron | 40.0% | |
| AATTACAGGTTCAAGCATGC+GGG | + | chr1_3:4365495-4365514 | Msa0098430:intron | 40.0% | |
| CCATTGGTATTAACATGGCA+TGG | - | chr1_3:4365544-4365563 | None:intergenic | 40.0% | |
| CCATGCCATGTTAATACCAA+TGG | + | chr1_3:4365541-4365560 | Msa0098430:CDS | 40.0% | |
| ! | ACCAATGGAGTACTTTCTCA+TGG | + | chr1_3:4365556-4365575 | Msa0098430:CDS | 40.0% |
| ! | CCAATGGAGTACTTTCTCAT+GGG | + | chr1_3:4365557-4365576 | Msa0098430:CDS | 40.0% |
| GAGTACTTTCTCATGGGATA+TGG | + | chr1_3:4365563-4365582 | Msa0098430:CDS | 40.0% | |
| !!! | GCTTTTTTCACCTGAGAGTA+TGG | + | chr1_3:4365655-4365674 | Msa0098430:CDS | 40.0% |
| TGCCGTATGGTTGTAGATAA+TGG | + | chr1_3:4365835-4365854 | Msa0098430:three_prime_UTR | 40.0% | |
| GCCGTATGGTTGTAGATAAT+GGG | + | chr1_3:4365836-4365855 | Msa0098430:three_prime_UTR | 40.0% | |
| TTCCATCTCTCCTTCACCTA+AGG | + | chr1_3:4360694-4360713 | Msa0098430:intron | 45.0% | |
| ATCGATAGTGCAAAGAGTCG+TGG | + | chr1_3:4361259-4361278 | Msa0098430:intron | 45.0% | |
| TCTGTCTCTGTTGCTGTGTA+TGG | + | chr1_3:4362071-4362090 | Msa0098430:CDS | 45.0% | |
| CTGTCTCTGTTGCTGTGTAT+GGG | + | chr1_3:4362072-4362091 | Msa0098430:CDS | 45.0% | |
| TGTCTCTGTTGCTGTGTATG+GGG | + | chr1_3:4362073-4362092 | Msa0098430:CDS | 45.0% | |
| !! | TGATAAGAGCTGGTTTGTCC+TGG | - | chr1_3:4362100-4362119 | None:intergenic | 45.0% |
| TCAGGATAGGTGATAAGAGC+TGG | - | chr1_3:4362110-4362129 | None:intergenic | 45.0% | |
| AGAATGTTAAACAGTGCCCC+CGG | - | chr1_3:4362651-4362670 | None:intergenic | 45.0% | |
| GCAGAAGATGATAAGCAACC+AGG | - | chr1_3:4362920-4362939 | None:intergenic | 45.0% | |
| ! | CTTAGCGGATCAAATAGCTG+AGG | + | chr1_3:4363011-4363030 | Msa0098430:CDS | 45.0% |
| AGGGTTAGATCCCATGATGT+GGG | - | chr1_3:4363262-4363281 | None:intergenic | 45.0% | |
| ATGTGTATGGGAGTAACTGC+TGG | + | chr1_3:4363317-4363336 | Msa0098430:CDS | 45.0% | |
| TGTGTATGGGAGTAACTGCT+GGG | + | chr1_3:4363318-4363337 | Msa0098430:CDS | 45.0% | |
| ATTTGGGAGAGAGAGGAAGA+CGG | - | chr1_3:4363385-4363404 | None:intergenic | 45.0% | |
| AAGAACCATCTTGGTCTGAG+TGG | + | chr1_3:4363500-4363519 | Msa0098430:CDS | 45.0% | |
| TACAACCACTCAGACCAAGA+TGG | - | chr1_3:4363508-4363527 | None:intergenic | 45.0% | |
| GTCTGAGTGGTTGTACAACA+AGG | + | chr1_3:4363513-4363532 | Msa0098430:CDS | 45.0% | |
| !!! | GCTGAAGCGGTATTTTAGCA+AGG | + | chr1_3:4363669-4363688 | Msa0098430:CDS | 45.0% |
| GCTTTGACCATATCTGACTC+CGG | - | chr1_3:4363896-4363915 | None:intergenic | 45.0% | |
| ATATGGTCAAAGCATGCCGA+AGG | + | chr1_3:4363903-4363922 | Msa0098430:CDS | 45.0% | |
| TATGGTCAAAGCATGCCGAA+GGG | + | chr1_3:4363904-4363923 | Msa0098430:CDS | 45.0% | |
| ATGTAGGGACTGGGTTTAAG+TGG | + | chr1_3:4363949-4363968 | Msa0098430:intron | 45.0% | |
| ACGAATAGATTTGCCCACCA+TGG | + | chr1_3:4363988-4364007 | Msa0098430:intron | 45.0% | |
| TATGAGCATCTGACCATGGT+GGG | - | chr1_3:4364004-4364023 | None:intergenic | 45.0% | |
| ATATGAGCATCTGACCATGG+TGG | - | chr1_3:4364005-4364024 | None:intergenic | 45.0% | |
| GACATATGAGCATCTGACCA+TGG | - | chr1_3:4364008-4364027 | None:intergenic | 45.0% | |
| ACTGAATTACTGGGTGGGAT+TGG | - | chr1_3:4364043-4364062 | None:intergenic | 45.0% | |
| CCCAGAAAAGCGGTAAAATG+AGG | - | chr1_3:4364150-4364169 | None:intergenic | 45.0% | |
| AGCTTCAGAAAACCAGCAAC+AGG | - | chr1_3:4364750-4364769 | None:intergenic | 45.0% | |
| CTCAATCCTTCACTTAGGTC+AGG | - | chr1_3:4365264-4365283 | None:intergenic | 45.0% | |
| ACGATTCAGTGCCTTAGTTG+AGG | + | chr1_3:4365371-4365390 | Msa0098430:CDS | 45.0% | |
| !! | CCCATGAGAAAGTACTCCAT+TGG | - | chr1_3:4365560-4365579 | None:intergenic | 45.0% |
| TCATGGGATATGGTCTGTAC+AGG | + | chr1_3:4365573-4365592 | Msa0098430:CDS | 45.0% | |
| ATGGACTCAAGGGACTTCTT+GGG | - | chr1_3:4365619-4365638 | None:intergenic | 45.0% | |
| CTCTCAGGTGAAAAAAGCTC+AGG | - | chr1_3:4365653-4365672 | None:intergenic | 45.0% | |
| !! | ATGAAATAGGGAGTGCCGTA+TGG | + | chr1_3:4365822-4365841 | Msa0098430:three_prime_UTR | 45.0% |
| !!! | AAAATAATTTTCATTTAAAA+TGG | + | chr1_3:4361580-4361599 | Msa0098430:intron | 5.0% |
| !! | AACACCTACCGATTCCGTGT+CGG | + | chr1_3:4360661-4360680 | Msa0098430:CDS | 50.0% |
| CATATCCACCGACACGGAAT+CGG | - | chr1_3:4360672-4360691 | None:intergenic | 50.0% | |
| GGAATCCATATCCACCGACA+CGG | - | chr1_3:4360678-4360697 | None:intergenic | 50.0% | |
| TGCCTTAGGTGAAGGAGAGA+TGG | - | chr1_3:4360699-4360718 | None:intergenic | 50.0% | |
| TGTTGTGGTGGCCTAGAATG+TGG | + | chr1_3:4361348-4361367 | Msa0098430:intron | 50.0% | |
| AAGGTTTGTGAGCACGCTCT+AGG | - | chr1_3:4361537-4361556 | None:intergenic | 50.0% | |
| TGGATTCTTAACCAGTGCCC+CGG | - | chr1_3:4362522-4362541 | None:intergenic | 50.0% | |
| ! | TTGGTGCTTAACCAATGCCC+CGG | + | chr1_3:4362629-4362648 | Msa0098430:intron | 50.0% |
| AATGTTAAACAGTGCCCCCG+GGG | - | chr1_3:4362649-4362668 | None:intergenic | 50.0% | |
| GAATGTTAAACAGTGCCCCC+GGG | - | chr1_3:4362650-4362669 | None:intergenic | 50.0% | |
| ATCAGACGTCTCCTGCTTTC+AGG | + | chr1_3:4362734-4362753 | Msa0098430:intron | 50.0% | |
| TCAGACGTCTCCTGCTTTCA+GGG | + | chr1_3:4362735-4362754 | Msa0098430:intron | 50.0% | |
| TAGATCCCATGATGTGGGGA+AGG | - | chr1_3:4363257-4363276 | None:intergenic | 50.0% | |
| GGGTTAGATCCCATGATGTG+GGG | - | chr1_3:4363261-4363280 | None:intergenic | 50.0% | |
| CAGGGTTAGATCCCATGATG+TGG | - | chr1_3:4363263-4363282 | None:intergenic | 50.0% | |
| GTGTATGGGAGTAACTGCTG+GGG | + | chr1_3:4363319-4363338 | Msa0098430:CDS | 50.0% | |
| ! | CTTTTATGGCATGTGTGGGG+TGG | + | chr1_3:4363633-4363652 | Msa0098430:CDS | 50.0% |
| TGGTGATAGGAAATTCGCGG+CGG | + | chr1_3:4363860-4363879 | Msa0098430:intron | 50.0% | |
| CCAGCAACAGGTAAAACCCA+GGG | - | chr1_3:4364738-4364757 | None:intergenic | 50.0% | |
| ACCAGCAACAGGTAAAACCC+AGG | - | chr1_3:4364739-4364758 | None:intergenic | 50.0% | |
| !! | TTTTGAGGGTGGGGTGTTTC+AGG | + | chr1_3:4365004-4365023 | Msa0098430:intron | 50.0% |
| AGGAGACCTGACCTAAGTGA+AGG | + | chr1_3:4365255-4365274 | Msa0098430:intron | 50.0% | |
| ! | TGGAGTGCCTCTGAGTGATA+TGG | - | chr1_3:4365330-4365349 | None:intergenic | 50.0% |
| ATGCGGGTCAATGGTAACAG+AGG | + | chr1_3:4365511-4365530 | Msa0098430:CDS | 50.0% | |
| ! | GATGGACTCAAGGGACTTCT+TGG | - | chr1_3:4365620-4365639 | None:intergenic | 50.0% |
| ! | CGATTCCGTGTCGGTGGATA+TGG | + | chr1_3:4360670-4360689 | Msa0098430:intron | 55.0% |
| TTACAGAGAACGGCGGTTGC+TGG | + | chr1_3:4361464-4361483 | Msa0098430:intron | 55.0% | |
| CAGCTGCATTGTGGCTGCAA+AGG | + | chr1_3:4361487-4361506 | Msa0098430:intron | 55.0% | |
| TGTTGCTGTGTATGGGGACC+AGG | + | chr1_3:4362079-4362098 | Msa0098430:CDS | 55.0% | |
| ! | GTCTTGTTAACCAGTGCCCC+CGG | + | chr1_3:4362500-4362519 | Msa0098430:intron | 55.0% |
| TCTTGTTAACCAGTGCCCCC+GGG | + | chr1_3:4362501-4362520 | Msa0098430:intron | 55.0% | |
| ATTCTTAACCAGTGCCCCGG+GGG | - | chr1_3:4362519-4362538 | None:intergenic | 55.0% | |
| GATTCTTAACCAGTGCCCCG+GGG | - | chr1_3:4362520-4362539 | None:intergenic | 55.0% | |
| GGATTCTTAACCAGTGCCCC+GGG | - | chr1_3:4362521-4362540 | None:intergenic | 55.0% | |
| TGGTGCTTAACCAATGCCCC+GGG | + | chr1_3:4362630-4362649 | Msa0098430:intron | 55.0% | |
| CAGACGTCTCCTGCTTTCAG+GGG | + | chr1_3:4362736-4362755 | Msa0098430:intron | 55.0% | |
| CATTAGTCCACCTGGGCATG+AGG | + | chr1_3:4362815-4362834 | Msa0098430:intron | 55.0% | |
| AAGCTACAGACCTCATGCCC+AGG | - | chr1_3:4362828-4362847 | None:intergenic | 55.0% | |
| TGGCATGTGTGGGGTGGTAA+AGG | + | chr1_3:4363639-4363658 | Msa0098430:CDS | 55.0% | |
| TCGCGGCGGTACTCAATTTC+CGG | + | chr1_3:4363874-4363893 | Msa0098430:CDS | 55.0% | |
| GCAACAGGTAAAACCCAGGG+CGG | - | chr1_3:4364735-4364754 | None:intergenic | 55.0% | |
| ! | CCCTGGGTTTTACCTGTTGC+TGG | + | chr1_3:4364735-4364754 | Msa0098430:intron | 55.0% |
| GGTTCAAGCATGCGGGTCAA+TGG | + | chr1_3:4365502-4365521 | Msa0098430:intron | 55.0% | |
| ATGGTCTGTACAGGCCATCC+AGG | + | chr1_3:4365582-4365601 | Msa0098430:CDS | 55.0% | |
| TCTTGGGCTGACACTCTTCC+TGG | - | chr1_3:4365603-4365622 | None:intergenic | 55.0% | |
| !! | ACCTACCGATTCCGTGTCGG+TGG | + | chr1_3:4360664-4360683 | Msa0098430:intron | 60.0% |
| TCCACCGACACGGAATCGGT+AGG | - | chr1_3:4360668-4360687 | None:intergenic | 60.0% | |
| GGTTGCTGGCAGCTGCATTG+TGG | + | chr1_3:4361478-4361497 | Msa0098430:intron | 60.0% | |
| CTTGTTAACCAGTGCCCCCG+GGG | + | chr1_3:4362502-4362521 | Msa0098430:intron | 60.0% | |
| GGTGCTTAACCAATGCCCCG+GGG | + | chr1_3:4362631-4362650 | Msa0098430:intron | 60.0% | |
| GTGCTTAACCAATGCCCCGG+GGG | + | chr1_3:4362632-4362651 | Msa0098430:intron | 60.0% | |
| CTACAGACCTCATGCCCAGG+TGG | - | chr1_3:4362825-4362844 | None:intergenic | 60.0% | |
| AGGGCGGCGTTTAGCACGAT+CGG | - | chr1_3:4364719-4364738 | None:intergenic | 60.0% | |
| ATCGTGCTAAACGCCGCCCT+GGG | + | chr1_3:4364719-4364738 | Msa0098430:CDS | 60.0% | |
| GGGCTGACACTCTTCCTGGA+TGG | - | chr1_3:4365599-4365618 | None:intergenic | 60.0% | |
| AAACAGTGCCCCCGGGGCAT+TGG | - | chr1_3:4362643-4362662 | None:intergenic | 65.0% | |
| GATCGTGCTAAACGCCGCCC+TGG | + | chr1_3:4364718-4364737 | Msa0098430:CDS | 65.0% | |
| AACCAGTGCCCCCGGGGCAC+TGG | + | chr1_3:4362508-4362527 | Msa0098430:intron | 75.0% | |
| ! | AACCAGTGCCCCGGGGGCAC+TGG | - | chr1_3:4362513-4362532 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 4360650 | 4366211 | 4360650 | ID=Msa0098430;Name=Msa0098430 |
| chr1_3 | mRNA | 4360650 | 4366211 | 4360650 | ID=Msa0098430-mRNA-1;Parent=Msa0098430;Name=Msa0098430-mRNA-1;_AED=0.24;_eAED=0.26;_QI=0|0.5|0.63|1|0.7|0.81|11|487|328 |
| chr1_3 | exon | 4360650 | 4360682 | 4360650 | ID=Msa0098430-mRNA-1:exon:1450;Parent=Msa0098430-mRNA-1 |
| chr1_3 | exon | 4362044 | 4362134 | 4362044 | ID=Msa0098430-mRNA-1:exon:1451;Parent=Msa0098430-mRNA-1 |
| chr1_3 | exon | 4362950 | 4363049 | 4362950 | ID=Msa0098430-mRNA-1:exon:1452;Parent=Msa0098430-mRNA-1 |
| chr1_3 | exon | 4363304 | 4363364 | 4363304 | ID=Msa0098430-mRNA-1:exon:1453;Parent=Msa0098430-mRNA-1 |
| chr1_3 | exon | 4363448 | 4363534 | 4363448 | ID=Msa0098430-mRNA-1:exon:1454;Parent=Msa0098430-mRNA-1 |
| chr1_3 | exon | 4363613 | 4363690 | 4363613 | ID=Msa0098430-mRNA-1:exon:1455;Parent=Msa0098430-mRNA-1 |
| chr1_3 | exon | 4363869 | 4363925 | 4363869 | ID=Msa0098430-mRNA-1:exon:1456;Parent=Msa0098430-mRNA-1 |
| chr1_3 | exon | 4363955 | 4363961 | 4363955 | ID=Msa0098430-mRNA-1:exon:1457;Parent=Msa0098430-mRNA-1 |
| chr1_3 | exon | 4364626 | 4364740 | 4364626 | ID=Msa0098430-mRNA-1:exon:1458;Parent=Msa0098430-mRNA-1 |
| chr1_3 | exon | 4365257 | 4365392 | 4365257 | ID=Msa0098430-mRNA-1:exon:1459;Parent=Msa0098430-mRNA-1 |
| chr1_3 | exon | 4365503 | 4366211 | 4365503 | ID=Msa0098430-mRNA-1:exon:1460;Parent=Msa0098430-mRNA-1 |
| chr1_3 | CDS | 4360650 | 4360682 | 4360650 | ID=Msa0098430-mRNA-1:cds;Parent=Msa0098430-mRNA-1 |
| chr1_3 | CDS | 4362044 | 4362134 | 4362044 | ID=Msa0098430-mRNA-1:cds;Parent=Msa0098430-mRNA-1 |
| chr1_3 | CDS | 4362950 | 4363049 | 4362950 | ID=Msa0098430-mRNA-1:cds;Parent=Msa0098430-mRNA-1 |
| chr1_3 | CDS | 4363304 | 4363364 | 4363304 | ID=Msa0098430-mRNA-1:cds;Parent=Msa0098430-mRNA-1 |
| chr1_3 | CDS | 4363448 | 4363534 | 4363448 | ID=Msa0098430-mRNA-1:cds;Parent=Msa0098430-mRNA-1 |
| chr1_3 | CDS | 4363613 | 4363690 | 4363613 | ID=Msa0098430-mRNA-1:cds;Parent=Msa0098430-mRNA-1 |
| chr1_3 | CDS | 4363869 | 4363925 | 4363869 | ID=Msa0098430-mRNA-1:cds;Parent=Msa0098430-mRNA-1 |
| chr1_3 | CDS | 4363955 | 4363961 | 4363955 | ID=Msa0098430-mRNA-1:cds;Parent=Msa0098430-mRNA-1 |
| chr1_3 | CDS | 4364626 | 4364740 | 4364626 | ID=Msa0098430-mRNA-1:cds;Parent=Msa0098430-mRNA-1 |
| chr1_3 | CDS | 4365257 | 4365392 | 4365257 | ID=Msa0098430-mRNA-1:cds;Parent=Msa0098430-mRNA-1 |
| chr1_3 | CDS | 4365503 | 4365724 | 4365503 | ID=Msa0098430-mRNA-1:cds;Parent=Msa0098430-mRNA-1 |
| chr1_3 | three_prime_UTR | 4365725 | 4366211 | 4365725 | ID=Msa0098430-mRNA-1:three_prime_utr;Parent=Msa0098430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
