Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0053100 | sp|Q9ASU8|NDL2_ARATH | 78.769 | 325 | 68 | 1 | 4 | 328 | 20 | 343 | 0.0 | 531 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0053100 | G7IB94 | 98.476 | 328 | 5 | 0 | 4 | 331 | 22 | 349 | 0.0 | 672 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005040 | Msa0053100 | 0.966369 | 7.900176e-126 | -8.615850e-47 |
| Msa0053100 | Msa0098430 | 0.850661 | 1.470106e-60 | -8.615850e-47 |
| Msa0053100 | Msa0747770 | 0.969942 | 7.191865e-131 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0053100 | MtrunA17_Chr1g0151691 | 98.777 | 327 | 4 | 0 | 5 | 331 | 2 | 328 | 0.0 | 671 |
| Msa0053100 | MtrunA17_Chr8g0389281 | 78.963 | 328 | 69 | 0 | 4 | 331 | 20 | 347 | 0.0 | 545 |
| Msa0053100 | MtrunA17_Chr1g0190891 | 65.569 | 334 | 108 | 1 | 4 | 330 | 20 | 353 | 9.91e-166 | 465 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0053100 | AT5G11790.1 | 78.769 | 325 | 68 | 1 | 4 | 328 | 20 | 343 | 0.0 | 531 |
| Msa0053100 | AT5G56750.1 | 76.994 | 326 | 75 | 0 | 4 | 329 | 20 | 345 | 0.0 | 528 |
| Msa0053100 | AT5G56750.2 | 77.231 | 325 | 74 | 0 | 5 | 329 | 2 | 326 | 0.0 | 528 |
| Msa0053100 | AT2G19620.1 | 73.148 | 324 | 87 | 0 | 4 | 327 | 20 | 343 | 0.0 | 509 |
| Msa0053100 | AT2G19620.2 | 73.375 | 323 | 86 | 0 | 5 | 327 | 2 | 324 | 0.0 | 508 |
| Msa0053100 | AT5G11790.2 | 80.556 | 288 | 55 | 1 | 41 | 328 | 3 | 289 | 1.35e-172 | 481 |
| Msa0053100 | AT2G19620.3 | 72.664 | 289 | 79 | 0 | 39 | 327 | 1 | 289 | 1.49e-159 | 447 |
Find 106 sgRNAs with CRISPR-Local
Find 261 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAGTAATTCTAGTCTTTAT+AGG | 0.167495 | 1_2:-7512622 | None:intergenic |
| ATCAGACGTCTCCTGCTTTC+AGG | 0.185516 | 1_2:+7509852 | Msa0053100:intron |
| AATGGGAAATATGATGAAAT+AGG | 0.223204 | 1_2:+7512739 | Msa0053100:three_prime_UTR |
| TCTTGGGCTGACACTGTTCC+TGG | 0.235018 | 1_2:-7512530 | None:intergenic |
| TCTTATCACCTATCCTGATT+TGG | 0.248488 | 1_2:+7509415 | Msa0053100:CDS |
| CGGTTCCTTGAAGCTATTAA+TGG | 0.259213 | 1_2:+7511871 | Msa0053100:CDS |
| CTTATCACCTATCCTGATTT+GGG | 0.262260 | 1_2:+7509416 | Msa0053100:CDS |
| TGCCGTATGGTTGTAGATAA+TGG | 0.280783 | 1_2:+7512765 | Msa0053100:three_prime_UTR |
| TCGCGGTGGTACTCAATTTC+CGG | 0.287965 | 1_2:+7510893 | Msa0053100:CDS |
| CCTATAAAGACTAGAATTAC+TGG | 0.294839 | 1_2:+7512622 | Msa0053100:CDS |
| AAATATCGACAACGTGTTCT+TGG | 0.298043 | 1_2:+7510570 | Msa0053100:CDS |
| TCTGTCTCTGTTGCTGTGTA+TGG | 0.298337 | 1_2:+7509374 | Msa0053100:CDS |
| GATGGACTCAAGGGACTTCT+TGG | 0.315273 | 1_2:-7512547 | None:intergenic |
| ATGAAAACTTACAGCAAATA+AGG | 0.336620 | 1_2:-7510473 | None:intergenic |
| GAAATAAGAAATCAACAAAA+AGG | 0.341696 | 1_2:+7512796 | Msa0053100:three_prime_UTR |
| TGTCTAACTTTGTAGTGATA+TGG | 0.350373 | 1_2:-7512277 | None:intergenic |
| AGCAGCAAGTAATATGCTTC+TGG | 0.352622 | 1_2:-7509889 | None:intergenic |
| CTGTCTCTGTTGCTGTGTAT+GGG | 0.372972 | 1_2:+7509375 | Msa0053100:CDS |
| CTCAATCCTTCACTTAGGTC+AGG | 0.378178 | 1_2:-7512191 | None:intergenic |
| TTACAATTTAAACCCAAATC+AGG | 0.381571 | 1_2:-7509428 | None:intergenic |
| TCAGACGTCTCCTGCTTTCA+GGG | 0.390147 | 1_2:+7509853 | Msa0053100:intron |
| ACAGATAGAACAGGATAATC+TGG | 0.390788 | 1_2:-7510100 | None:intergenic |
| GTTGTAGATAATGGGATATA+AGG | 0.397529 | 1_2:+7512774 | Msa0053100:three_prime_UTR |
| ATGGGAAATATGATGAAATA+GGG | 0.398319 | 1_2:+7512740 | Msa0053100:three_prime_UTR |
| GAGTACTTTCTCATGGGATA+TGG | 0.412981 | 1_2:+7512493 | Msa0053100:CDS |
| GCCGTATGGTTGTAGATAAT+GGG | 0.419726 | 1_2:+7512766 | Msa0053100:three_prime_UTR |
| TGGAGTGCCTCTGAGTGATA+TGG | 0.433217 | 1_2:-7512257 | None:intergenic |
| TCTTAATGCAGTTATGTGTA+TGG | 0.436829 | 1_2:+7510423 | Msa0053100:CDS |
| GTTTCGTAAACAGATCTTAC+GGG | 0.440120 | 1_2:-7512694 | None:intergenic |
| TGGCATGTGTGGGGTGGTAA+AGG | 0.440330 | 1_2:+7510758 | Msa0053100:CDS |
| GGTTCCTTGAAGCTATTAAT+GGG | 0.446324 | 1_2:+7511872 | Msa0053100:CDS |
| GATTGAGAAACCTACATTGC+CGG | 0.456707 | 1_2:+7512207 | Msa0053100:CDS |
| CATACCCATTAATAGCTTCA+AGG | 0.466016 | 1_2:-7511876 | None:intergenic |
| TGTTTCGTAAACAGATCTTA+CGG | 0.475222 | 1_2:-7512695 | None:intergenic |
| CTCTATGTAAAGAACCATCT+TGG | 0.476906 | 1_2:+7510610 | Msa0053100:CDS |
| CAATTTCAAACCCATACTCT+CGG | 0.479414 | 1_2:-7512596 | None:intergenic |
| GGTTTCTCAATCCTTCACTT+AGG | 0.485709 | 1_2:-7512196 | None:intergenic |
| TGCTACTGATATGTATCTGC+AGG | 0.492091 | 1_2:+7509325 | Msa0053100:exon |
| TGTTGCTGTGTATGGGGACC+AGG | 0.494219 | 1_2:+7509382 | Msa0053100:CDS |
| AAATTAGTGACCGGCAATGT+AGG | 0.494981 | 1_2:-7512217 | None:intergenic |
| ATGGTCTGTACAGGCCATCC+AGG | 0.496740 | 1_2:+7512512 | Msa0053100:CDS |
| TGATAAGAGCTGGTTTGTCC+TGG | 0.497015 | 1_2:-7509400 | None:intergenic |
| GGTTCAAGCATGCGGGTCAA+TGG | 0.498997 | 1_2:+7512432 | Msa0053100:intron |
| ATGGACTCAAGGGACTTCTT+GGG | 0.500002 | 1_2:-7512546 | None:intergenic |
| CTATAAAGACTAGAATTACT+GGG | 0.502276 | 1_2:+7512623 | Msa0053100:CDS |
| AAGTCATCTACAGATAGAAC+AGG | 0.502528 | 1_2:-7510109 | None:intergenic |
| GGGCTGACACTGTTCCTGGA+TGG | 0.506295 | 1_2:-7512526 | None:intergenic |
| CTATTTACATACCTCAACTA+AGG | 0.516795 | 1_2:-7512312 | None:intergenic |
| TGTGTATGGGAGTAACTGCT+GGG | 0.517895 | 1_2:+7510437 | Msa0053100:CDS |
| ACCAATGGAGTACTTTCTCA+TGG | 0.518496 | 1_2:+7512486 | Msa0053100:CDS |
| TCATGGGATATGGTCTGTAC+AGG | 0.520593 | 1_2:+7512503 | Msa0053100:CDS |
| CCATGCCATGTTAATACCAA+TGG | 0.521144 | 1_2:+7512471 | Msa0053100:CDS |
| CATTGGTATTAACATGGCAT+GGG | 0.528281 | 1_2:-7512470 | None:intergenic |
| CAAGATGGTTCTTTACATAG+AGG | 0.528987 | 1_2:-7510609 | None:intergenic |
| ATGTGTATGGGAGTAACTGC+TGG | 0.530635 | 1_2:+7510436 | Msa0053100:CDS |
| AATTTCAAACCCATACTCTC+GGG | 0.533634 | 1_2:-7512595 | None:intergenic |
| CCATTGGTATTAACATGGCA+TGG | 0.534695 | 1_2:-7512471 | None:intergenic |
| TATTACAGTCTTTGGATGAG+AGG | 0.535492 | 1_2:+7511830 | Msa0053100:intron |
| AAATAATAACCCCTGAAAGC+AGG | 0.537854 | 1_2:-7509863 | None:intergenic |
| CTTAATGCAGTTATGTGTAT+GGG | 0.543450 | 1_2:+7510424 | Msa0053100:CDS |
| TGTCTCTGTTGCTGTGTATG+GGG | 0.548337 | 1_2:+7509376 | Msa0053100:CDS |
| GATGAATAATGATGGTTGGT+TGG | 0.550240 | 1_2:+7512660 | Msa0053100:three_prime_UTR |
| TCAGGATAGGTGATAAGAGC+TGG | 0.553536 | 1_2:-7509410 | None:intergenic |
| AGCTCAGGAGAAATACAAGA+TGG | 0.560956 | 1_2:-7512565 | None:intergenic |
| CATTAGTCCACCTGGGCATG+AGG | 0.562740 | 1_2:+7509933 | Msa0053100:CDS |
| TTGTGGTGATAGGAAATTCG+CGG | 0.562990 | 1_2:+7510876 | Msa0053100:intron |
| CCCATGAGAAAGTACTCCAT+TGG | 0.566374 | 1_2:-7512487 | None:intergenic |
| TCTATCTGTAGATGACTTAG+CGG | 0.567432 | 1_2:+7510114 | Msa0053100:CDS |
| ATATATCACATTAGTCCACC+TGG | 0.572606 | 1_2:+7509925 | Msa0053100:CDS |
| AGAAATACAAGATGGACTCA+AGG | 0.575493 | 1_2:-7512557 | None:intergenic |
| ACGATTCAGTGCCTTAGTTG+AGG | 0.579061 | 1_2:+7512301 | Msa0053100:CDS |
| TAAAGGAAATATTGCTGAAG+CGG | 0.583967 | 1_2:+7510775 | Msa0053100:CDS |
| AATTACAGGTTCAAGCATGC+GGG | 0.584432 | 1_2:+7512425 | Msa0053100:intron |
| TCCCATTATCTACAACCATA+CGG | 0.588077 | 1_2:-7512767 | None:intergenic |
| GTCTGAGTGGTTGTACAACA+AGG | 0.588354 | 1_2:+7510632 | Msa0053100:CDS |
| ATTTAAACCCAAATCAGGAT+AGG | 0.588603 | 1_2:-7509423 | None:intergenic |
| TAATTACAGGTTCAAGCATG+CGG | 0.591579 | 1_2:+7512424 | Msa0053100:intron |
| CCAATGGAGTACTTTCTCAT+GGG | 0.603018 | 1_2:+7512487 | Msa0053100:CDS |
| AAGCTACAGACCTCATGCCC+AGG | 0.603979 | 1_2:-7509943 | None:intergenic |
| CAGACGTCTCCTGCTTTCAG+GGG | 0.604861 | 1_2:+7509854 | Msa0053100:intron |
| ATGAAATAGGGAGTGCCGTA+TGG | 0.610934 | 1_2:+7512752 | Msa0053100:three_prime_UTR |
| CATATTATCAGAACATGTCA+TGG | 0.611620 | 1_2:+7509350 | Msa0053100:CDS |
| TAGAAGTAGATGAATAATGA+TGG | 0.612606 | 1_2:+7512652 | Msa0053100:exon |
| ATATAGTCAAAGCATGCCGA+AGG | 0.612760 | 1_2:+7510922 | Msa0053100:CDS |
| GTACAATTGTAAAGCAAACA+TGG | 0.617571 | 1_2:+7512966 | Msa0053100:three_prime_UTR |
| AGTAGATGAATAATGATGGT+TGG | 0.627590 | 1_2:+7512656 | Msa0053100:three_prime_UTR |
| GAAATACAAGATGGACTCAA+GGG | 0.627901 | 1_2:-7512556 | None:intergenic |
| GCTTTGACTATATCTGACTC+CGG | 0.640759 | 1_2:-7510912 | None:intergenic |
| AGGAGACCTGACCTAAGTGA+AGG | 0.640781 | 1_2:+7512185 | Msa0053100:intron |
| TACAACCACTCAGACCAAGA+TGG | 0.652299 | 1_2:-7510624 | None:intergenic |
| AGAGGCAAAGCTTGAATGTG+TGG | 0.655732 | 1_2:+7511848 | Msa0053100:CDS |
| CTACAGACCTCATGCCCAGG+TGG | 0.662824 | 1_2:-7509940 | None:intergenic |
| ATTGGTATTAACATGGCATG+GGG | 0.665921 | 1_2:-7512469 | None:intergenic |
| GGCAAAGCTTGAATGTGTGG+CGG | 0.666001 | 1_2:+7511851 | Msa0053100:CDS |
| TATATCACATTAGTCCACCT+GGG | 0.675970 | 1_2:+7509926 | Msa0053100:CDS |
| GTACTCCATTGGTATTAACA+TGG | 0.679020 | 1_2:-7512476 | None:intergenic |
| ATGCGGGTCAATGGTAACAG+AGG | 0.682086 | 1_2:+7512441 | Msa0053100:CDS |
| GTGTATGGGAGTAACTGCTG+GGG | 0.683228 | 1_2:+7510438 | Msa0053100:CDS |
| TATAGTCAAAGCATGCCGAA+GGG | 0.685136 | 1_2:+7510923 | Msa0053100:CDS |
| TATAAAGACTAGAATTACTG+GGG | 0.686762 | 1_2:+7512624 | Msa0053100:CDS |
| TTTCGTAAACAGATCTTACG+GGG | 0.688716 | 1_2:-7512693 | None:intergenic |
| TGGTGATAGGAAATTCGCGG+TGG | 0.707804 | 1_2:+7510879 | Msa0053100:intron |
| CTTAGCGGATCAAATAGCTG+AGG | 0.709294 | 1_2:+7510129 | Msa0053100:CDS |
| AAGAACCATCTTGGTCTGAG+TGG | 0.713563 | 1_2:+7510619 | Msa0053100:CDS |
| TATGTCTCCATATCACTCAG+AGG | 0.729931 | 1_2:+7512250 | Msa0053100:CDS |
| CAATTGTAAAGCAAACATGG+AGG | 0.793931 | 1_2:+7512969 | Msa0053100:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTATTTTATTTTGCTAA+AGG | + | chr1_2:7512934-7512953 | Msa0053100:three_prime_UTR | 10.0% |
| !!! | TTCTTTGTATAAAACATTTT+AGG | - | chr1_2:7509711-7509730 | None:intergenic | 15.0% |
| !! | TAAGTAAATTAAAGTCATTT+GGG | - | chr1_2:7510520-7510539 | None:intergenic | 15.0% |
| !! | TTAAGTAAATTAAAGTCATT+TGG | - | chr1_2:7510521-7510540 | None:intergenic | 15.0% |
| !!! | AACATATTTTATTTTCATGT+AGG | + | chr1_2:7510952-7510971 | Msa0053100:intron | 15.0% |
| !!! | ACATATTTTATTTTCATGTA+GGG | + | chr1_2:7510953-7510972 | Msa0053100:intron | 15.0% |
| !! | ATGCCTTTATATTAAATAAT+TGG | + | chr1_2:7511297-7511316 | Msa0053100:intron | 15.0% |
| !! | TTGCCAATTATTTAATATAA+AGG | - | chr1_2:7511303-7511322 | None:intergenic | 15.0% |
| !!! | TAATTAATTTTTGACAATGT+TGG | - | chr1_2:7511534-7511553 | None:intergenic | 15.0% |
| !!! | TTTTTAATTCAAATATCTCT+AGG | + | chr1_2:7511585-7511604 | Msa0053100:intron | 15.0% |
| !! | ACTTAAATTCAATATGTTTA+GGG | + | chr1_2:7512093-7512112 | Msa0053100:intron | 15.0% |
| !! | ATCACAAAGTTAAATAAAAA+TGG | - | chr1_2:7512155-7512174 | None:intergenic | 15.0% |
| !!! | ATTTTTATTTAACTTTGTGA+TGG | + | chr1_2:7512154-7512173 | Msa0053100:intron | 15.0% |
| !!! | AAAATAATGGAAAAAGTCAA+GGG | - | chr1_2:7509483-7509502 | None:intergenic | 20.0% |
| !!! | AAAAATAATGGAAAAAGTCA+AGG | - | chr1_2:7509484-7509503 | None:intergenic | 20.0% |
| !! | AGAAAAGAAATACTTTAATG+AGG | - | chr1_2:7509669-7509688 | None:intergenic | 20.0% |
| !!! | AGTCTAATTTTTTCTTTTCA+TGG | + | chr1_2:7509811-7509830 | Msa0053100:intron | 20.0% |
| !! | TATAGATATTCATAACAGTA+AGG | - | chr1_2:7509994-7510013 | None:intergenic | 20.0% |
| !!! | TCAAATTTACTGTACTTTTA+TGG | + | chr1_2:7510738-7510757 | Msa0053100:CDS | 20.0% |
| !! | ACAAATAAAAGTAAATGACT+CGG | - | chr1_2:7510860-7510879 | None:intergenic | 20.0% |
| !!! | ATTGATATTTTTGGACATTA+TGG | + | chr1_2:7511129-7511148 | Msa0053100:intron | 20.0% |
| !! | CATCTAATAAGGAAAAAATT+GGG | - | chr1_2:7511245-7511264 | None:intergenic | 20.0% |
| !! | TCATCTAATAAGGAAAAAAT+TGG | - | chr1_2:7511246-7511265 | None:intergenic | 20.0% |
| !!! | TTTCAACTCATTTTACAATT+AGG | + | chr1_2:7511634-7511653 | Msa0053100:intron | 20.0% |
| !! | TAATAAATATATCAAGAGTC+AGG | - | chr1_2:7511815-7511834 | None:intergenic | 20.0% |
| !! | GATATATTTATTACAGTCTT+TGG | + | chr1_2:7511822-7511841 | Msa0053100:intron | 20.0% |
| !!! | TGATTTTCATTTTCTTTTTG+AGG | + | chr1_2:7511919-7511938 | Msa0053100:intron | 20.0% |
| !!! | GATTTTCATTTTCTTTTTGA+GGG | + | chr1_2:7511920-7511939 | Msa0053100:intron | 20.0% |
| !! | CACTTAAATTCAATATGTTT+AGG | + | chr1_2:7512092-7512111 | Msa0053100:intron | 20.0% |
| !!! | TCATTTTTCTATGATTAGAA+TGG | + | chr1_2:7512721-7512740 | Msa0053100:three_prime_UTR | 20.0% |
| !!! | CATTTTTCTATGATTAGAAT+GGG | + | chr1_2:7512722-7512741 | Msa0053100:three_prime_UTR | 20.0% |
| !! | GAAATAAGAAATCAACAAAA+AGG | + | chr1_2:7512796-7512815 | Msa0053100:three_prime_UTR | 20.0% |
| !!! | TCACAGTCTATATATTTTAT+TGG | + | chr1_2:7513043-7513062 | Msa0053100:three_prime_UTR | 20.0% |
| ! | TTACAATTTAAACCCAAATC+AGG | - | chr1_2:7509431-7509450 | None:intergenic | 25.0% |
| ! | GGTTTAAATTGTAAGTAAAC+TGG | + | chr1_2:7509437-7509456 | Msa0053100:intron | 25.0% |
| !!! | TTCCATTATTTTTGTACTAC+AGG | + | chr1_2:7509491-7509510 | Msa0053100:intron | 25.0% |
| !!! | TCCATTATTTTTGTACTACA+GGG | + | chr1_2:7509492-7509511 | Msa0053100:intron | 25.0% |
| ! | TTGTCAAAACTAAATGTACT+GGG | - | chr1_2:7509582-7509601 | None:intergenic | 25.0% |
| ! | TTTGTCAAAACTAAATGTAC+TGG | - | chr1_2:7509583-7509602 | None:intergenic | 25.0% |
| !! | GGAAATGAAACGTATATTTT+AGG | - | chr1_2:7509648-7509667 | None:intergenic | 25.0% |
| !! | TTTTCATGGACATAATATTG+CGG | + | chr1_2:7509825-7509844 | Msa0053100:intron | 25.0% |
| ! | TGTGATATATGCAAAAATTG+TGG | - | chr1_2:7509915-7509934 | None:intergenic | 25.0% |
| ! | TTGAATGCTTATAATTTACC+TGG | + | chr1_2:7510017-7510036 | Msa0053100:intron | 25.0% |
| ! | AAAAAAAAAAAAGAGCAGCA+GGG | - | chr1_2:7510399-7510418 | None:intergenic | 25.0% |
| ! | AAAAAAAAAAAAAGAGCAGC+AGG | - | chr1_2:7510400-7510419 | None:intergenic | 25.0% |
| ! | ATGAAAACTTACAGCAAATA+AGG | - | chr1_2:7510476-7510495 | None:intergenic | 25.0% |
| !! | TTTTACAAGACATGATGTTT+CGG | - | chr1_2:7510671-7510690 | None:intergenic | 25.0% |
| ! | AAAGAATTTGTGATATTTGC+AGG | + | chr1_2:7510710-7510729 | Msa0053100:intron | 25.0% |
| !!! | GAGTCATTTACTTTTATTTG+TGG | + | chr1_2:7510859-7510878 | Msa0053100:intron | 25.0% |
| !!! | TTACTTTTATTTGTGGTGAT+AGG | + | chr1_2:7510866-7510885 | Msa0053100:intron | 25.0% |
| ! | AAAATGATAAATTACTGGGT+GGG | - | chr1_2:7511067-7511086 | None:intergenic | 25.0% |
| ! | GGACAAAATGATAAATTACT+GGG | - | chr1_2:7511071-7511090 | None:intergenic | 25.0% |
| ! | CCAAAAATATCAATTGCTTT+GGG | - | chr1_2:7511123-7511142 | None:intergenic | 25.0% |
| ! | TCCAAAAATATCAATTGCTT+TGG | - | chr1_2:7511124-7511143 | None:intergenic | 25.0% |
| ! | TTAAATCTTCAATGCATGTA+CGG | + | chr1_2:7511445-7511464 | Msa0053100:intron | 25.0% |
| ! | CTGAATGCTTATTTATTGAA+TGG | - | chr1_2:7511613-7511632 | None:intergenic | 25.0% |
| ! | TTCCAAAACTAATACATCAA+TGG | + | chr1_2:7511684-7511703 | Msa0053100:intron | 25.0% |
| !!! | TACCATTGATGTATTAGTTT+TGG | - | chr1_2:7511689-7511708 | None:intergenic | 25.0% |
| ! | ATCATATATACTTGTATGCA+TGG | + | chr1_2:7512024-7512043 | Msa0053100:intron | 25.0% |
| ! | TTTGCATCAAAATTCAAAAC+AGG | - | chr1_2:7512061-7512080 | None:intergenic | 25.0% |
| ! | CTATAAAGACTAGAATTACT+GGG | + | chr1_2:7512623-7512642 | Msa0053100:CDS | 25.0% |
| ! | TATAAAGACTAGAATTACTG+GGG | + | chr1_2:7512624-7512643 | Msa0053100:CDS | 25.0% |
| ! | TAGAAGTAGATGAATAATGA+TGG | + | chr1_2:7512652-7512671 | Msa0053100:exon | 25.0% |
| ! | AATGGGAAATATGATGAAAT+AGG | + | chr1_2:7512739-7512758 | Msa0053100:three_prime_UTR | 25.0% |
| ! | ATGGGAAATATGATGAAATA+GGG | + | chr1_2:7512740-7512759 | Msa0053100:three_prime_UTR | 25.0% |
| ! | ATCAACAAAAAGGAAAGAAA+AGG | + | chr1_2:7512806-7512825 | Msa0053100:three_prime_UTR | 25.0% |
| !!! | ACAACAACTTTTTCAAAGTA+GGG | - | chr1_2:7513010-7513029 | None:intergenic | 25.0% |
| !!! | TACAACAACTTTTTCAAAGT+AGG | - | chr1_2:7513011-7513030 | None:intergenic | 25.0% |
| CATATTATCAGAACATGTCA+TGG | + | chr1_2:7509350-7509369 | Msa0053100:CDS | 30.0% | |
| ATTTAAACCCAAATCAGGAT+AGG | - | chr1_2:7509426-7509445 | None:intergenic | 30.0% | |
| !! | TTTTAGGAGCAAATCTTGAT+GGG | - | chr1_2:7509695-7509714 | None:intergenic | 30.0% |
| !! | ATTTTAGGAGCAAATCTTGA+TGG | - | chr1_2:7509696-7509715 | None:intergenic | 30.0% |
| !!! | CAAATCTAAATGTCGTTTTG+TGG | + | chr1_2:7509734-7509753 | Msa0053100:intron | 30.0% |
| !!! | TGTCGTTTTGTGGATTTTAT+CGG | + | chr1_2:7509744-7509763 | Msa0053100:intron | 30.0% |
| ATCGGAAATGTTTACTTTCT+TGG | + | chr1_2:7509762-7509781 | Msa0053100:intron | 30.0% | |
| AATTACTTCGTGACACTAAA+TGG | - | chr1_2:7510205-7510224 | None:intergenic | 30.0% | |
| !! | CTCTATCTGGCTTTAAATAT+TGG | + | chr1_2:7510238-7510257 | Msa0053100:intron | 30.0% |
| TCTTAATGCAGTTATGTGTA+TGG | + | chr1_2:7510423-7510442 | Msa0053100:CDS | 30.0% | |
| CTTAATGCAGTTATGTGTAT+GGG | + | chr1_2:7510424-7510443 | Msa0053100:CDS | 30.0% | |
| TAAAGGAAATATTGCTGAAG+CGG | + | chr1_2:7510775-7510794 | Msa0053100:CDS | 30.0% | |
| CTAACACTGAAAATAGAACA+AGG | - | chr1_2:7510836-7510855 | None:intergenic | 30.0% | |
| ! | CTTGTTCTATTTTCAGTGTT+AGG | + | chr1_2:7510834-7510853 | Msa0053100:intron | 30.0% |
| ! | AAATATGTTGACTAACCCTT+CGG | - | chr1_2:7510941-7510960 | None:intergenic | 30.0% |
| !!! | TTTTATTTTCATGTAGGGAC+TGG | + | chr1_2:7510958-7510977 | Msa0053100:intron | 30.0% |
| !! | TTTATTTTCATGTAGGGACT+GGG | + | chr1_2:7510959-7510978 | Msa0053100:intron | 30.0% |
| GTTTAAGTGGCATTTAACAT+GGG | + | chr1_2:7510981-7511000 | Msa0053100:intron | 30.0% | |
| CAAAATGATAAATTACTGGG+TGG | - | chr1_2:7511068-7511087 | None:intergenic | 30.0% | |
| GGGACAAAATGATAAATTAC+TGG | - | chr1_2:7511072-7511091 | None:intergenic | 30.0% | |
| ATGATGTCTTCTTGATACTT+CGG | - | chr1_2:7511093-7511112 | None:intergenic | 30.0% | |
| ! | CCCAAAGCAATTGATATTTT+TGG | + | chr1_2:7511120-7511139 | Msa0053100:intron | 30.0% |
| GAAAAAATTGGGATGAAGAA+AGG | - | chr1_2:7511234-7511253 | None:intergenic | 30.0% | |
| AATGTGCATTTGACTATGTT+GGG | + | chr1_2:7511710-7511729 | Msa0053100:intron | 30.0% | |
| ! | GGTATGATATTTTACTTCCA+AGG | + | chr1_2:7511893-7511912 | Msa0053100:intron | 30.0% |
| GAAAATGAAAATCACAACCT+TGG | - | chr1_2:7511913-7511932 | None:intergenic | 30.0% | |
| !! | TTTCATTTTCTTTTTGAGGG+TGG | + | chr1_2:7511923-7511942 | Msa0053100:intron | 30.0% |
| !! | TTCATTTTCTTTTTGAGGGT+GGG | + | chr1_2:7511924-7511943 | Msa0053100:intron | 30.0% |
| CAACATGTTAGTTATTGCTA+AGG | + | chr1_2:7511979-7511998 | Msa0053100:intron | 30.0% | |
| ! | ACTGTAATGTTATGTTGCTT+AGG | + | chr1_2:7512121-7512140 | Msa0053100:intron | 30.0% |
| ! | CTGTAATGTTATGTTGCTTA+GGG | + | chr1_2:7512122-7512141 | Msa0053100:intron | 30.0% |
| TGTCTAACTTTGTAGTGATA+TGG | - | chr1_2:7512280-7512299 | None:intergenic | 30.0% | |
| CTATTTACATACCTCAACTA+AGG | - | chr1_2:7512315-7512334 | None:intergenic | 30.0% | |
| ! | CCAGTAATTCTAGTCTTTAT+AGG | - | chr1_2:7512625-7512644 | None:intergenic | 30.0% |
| CCTATAAAGACTAGAATTAC+TGG | + | chr1_2:7512622-7512641 | Msa0053100:CDS | 30.0% | |
| AGTAGATGAATAATGATGGT+TGG | + | chr1_2:7512656-7512675 | Msa0053100:three_prime_UTR | 30.0% | |
| TGTTTCGTAAACAGATCTTA+CGG | - | chr1_2:7512698-7512717 | None:intergenic | 30.0% | |
| !! | GTTGTAGATAATGGGATATA+AGG | + | chr1_2:7512774-7512793 | Msa0053100:three_prime_UTR | 30.0% |
| GTACAATTGTAAAGCAAACA+TGG | + | chr1_2:7512966-7512985 | Msa0053100:three_prime_UTR | 30.0% | |
| !!! | CAACAACTTTTTCAAAGTAG+GGG | - | chr1_2:7513009-7513028 | None:intergenic | 30.0% |
| TCTTATCACCTATCCTGATT+TGG | + | chr1_2:7509415-7509434 | Msa0053100:CDS | 35.0% | |
| CTTATCACCTATCCTGATTT+GGG | + | chr1_2:7509416-7509435 | Msa0053100:CDS | 35.0% | |
| GCCCTGTAGTACAAAAATAA+TGG | - | chr1_2:7509496-7509515 | None:intergenic | 35.0% | |
| AAATAATAACCCCTGAAAGC+AGG | - | chr1_2:7509866-7509885 | None:intergenic | 35.0% | |
| ATATATCACATTAGTCCACC+TGG | + | chr1_2:7509925-7509944 | Msa0053100:CDS | 35.0% | |
| TATATCACATTAGTCCACCT+GGG | + | chr1_2:7509926-7509945 | Msa0053100:CDS | 35.0% | |
| ACAGATAGAACAGGATAATC+TGG | - | chr1_2:7510103-7510122 | None:intergenic | 35.0% | |
| AAGTCATCTACAGATAGAAC+AGG | - | chr1_2:7510112-7510131 | None:intergenic | 35.0% | |
| TCTATCTGTAGATGACTTAG+CGG | + | chr1_2:7510114-7510133 | Msa0053100:CDS | 35.0% | |
| !!! | CTGAGGTGCTTAACTTTTTT+GGG | + | chr1_2:7510146-7510165 | Msa0053100:CDS | 35.0% |
| ! | ATTTGAAGCTCCTTCTGTAA+TGG | + | chr1_2:7510291-7510310 | Msa0053100:intron | 35.0% |
| TTCAATCTGTCCATTACAGA+AGG | - | chr1_2:7510304-7510323 | None:intergenic | 35.0% | |
| AATGGACAGATTGAAAGTGA+CGG | + | chr1_2:7510309-7510328 | Msa0053100:intron | 35.0% | |
| AAATATCGACAACGTGTTCT+TGG | + | chr1_2:7510570-7510589 | Msa0053100:CDS | 35.0% | |
| CAAGATGGTTCTTTACATAG+AGG | - | chr1_2:7510612-7510631 | None:intergenic | 35.0% | |
| CTCTATGTAAAGAACCATCT+TGG | + | chr1_2:7510610-7510629 | Msa0053100:CDS | 35.0% | |
| ATGATGTTTCGGCAAAGAAA+AGG | - | chr1_2:7510660-7510679 | None:intergenic | 35.0% | |
| ! | TGTACTTTTATGGCATGTGT+GGG | + | chr1_2:7510748-7510767 | Msa0053100:CDS | 35.0% |
| GGTTTAAGTGGCATTTAACA+TGG | + | chr1_2:7510980-7510999 | Msa0053100:intron | 35.0% | |
| TGATGTCTTCTTGATACTTC+GGG | - | chr1_2:7511092-7511111 | None:intergenic | 35.0% | |
| CAAGTGATGCTCATCTAATA+AGG | - | chr1_2:7511256-7511275 | None:intergenic | 35.0% | |
| CTTGCTTAAAATCTGTTCAC+TGG | + | chr1_2:7511489-7511508 | Msa0053100:intron | 35.0% | |
| ACAATGTTGGTCAAGTCAAT+TGG | - | chr1_2:7511521-7511540 | None:intergenic | 35.0% | |
| ! | CAACCAACATGATTTTCGAA+GGG | - | chr1_2:7511663-7511682 | None:intergenic | 35.0% |
| ! | TCAACCAACATGATTTTCGA+AGG | - | chr1_2:7511664-7511683 | None:intergenic | 35.0% |
| GAATGTGCATTTGACTATGT+TGG | + | chr1_2:7511709-7511728 | Msa0053100:intron | 35.0% | |
| ATGTGCATTTGACTATGTTG+GGG | + | chr1_2:7511711-7511730 | Msa0053100:intron | 35.0% | |
| AATATATCAAGAGTCAGGCA+AGG | - | chr1_2:7511810-7511829 | None:intergenic | 35.0% | |
| TATTACAGTCTTTGGATGAG+AGG | + | chr1_2:7511830-7511849 | Msa0053100:intron | 35.0% | |
| GGTTCCTTGAAGCTATTAAT+GGG | + | chr1_2:7511872-7511891 | Msa0053100:CDS | 35.0% | |
| CATACCCATTAATAGCTTCA+AGG | - | chr1_2:7511879-7511898 | None:intergenic | 35.0% | |
| !! | TCATTTTCTTTTTGAGGGTG+GGG | + | chr1_2:7511925-7511944 | Msa0053100:intron | 35.0% |
| ACTTTGTGATGGCATATTAC+AGG | + | chr1_2:7512165-7512184 | Msa0053100:intron | 35.0% | |
| CATTCTCAACACATAGTAAC+AGG | - | chr1_2:7512346-7512365 | None:intergenic | 35.0% | |
| AGCTGTTGTTGTGTAATTAC+AGG | + | chr1_2:7512411-7512430 | Msa0053100:intron | 35.0% | |
| TAATTACAGGTTCAAGCATG+CGG | + | chr1_2:7512424-7512443 | Msa0053100:intron | 35.0% | |
| ATTGGTATTAACATGGCATG+GGG | - | chr1_2:7512472-7512491 | None:intergenic | 35.0% | |
| CATTGGTATTAACATGGCAT+GGG | - | chr1_2:7512473-7512492 | None:intergenic | 35.0% | |
| GTACTCCATTGGTATTAACA+TGG | - | chr1_2:7512479-7512498 | None:intergenic | 35.0% | |
| ! | GAAATACAAGATGGACTCAA+GGG | - | chr1_2:7512559-7512578 | None:intergenic | 35.0% |
| ! | AGAAATACAAGATGGACTCA+AGG | - | chr1_2:7512560-7512579 | None:intergenic | 35.0% |
| AATTTCAAACCCATACTCTC+GGG | - | chr1_2:7512598-7512617 | None:intergenic | 35.0% | |
| CAATTTCAAACCCATACTCT+CGG | - | chr1_2:7512599-7512618 | None:intergenic | 35.0% | |
| GATGAATAATGATGGTTGGT+TGG | + | chr1_2:7512660-7512679 | Msa0053100:three_prime_UTR | 35.0% | |
| TTTCGTAAACAGATCTTACG+GGG | - | chr1_2:7512696-7512715 | None:intergenic | 35.0% | |
| GTTTCGTAAACAGATCTTAC+GGG | - | chr1_2:7512697-7512716 | None:intergenic | 35.0% | |
| TCCCATTATCTACAACCATA+CGG | - | chr1_2:7512770-7512789 | None:intergenic | 35.0% | |
| CAATTGTAAAGCAAACATGG+AGG | + | chr1_2:7512969-7512988 | Msa0053100:three_prime_UTR | 35.0% | |
| TGCTACTGATATGTATCTGC+AGG | + | chr1_2:7509325-7509344 | Msa0053100:exon | 40.0% | |
| AGCAGCAAGTAATATGCTTC+TGG | - | chr1_2:7509892-7509911 | None:intergenic | 40.0% | |
| TCTTCAAGAGCTATTGCAGT+TGG | + | chr1_2:7510060-7510079 | Msa0053100:intron | 40.0% | |
| CTTCAAGAGCTATTGCAGTT+GGG | + | chr1_2:7510061-7510080 | Msa0053100:intron | 40.0% | |
| !!! | GCTGAGGTGCTTAACTTTTT+TGG | + | chr1_2:7510145-7510164 | Msa0053100:CDS | 40.0% |
| !! | GCTTTGAAGCTATCTCTATC+TGG | + | chr1_2:7510225-7510244 | Msa0053100:intron | 40.0% |
| ! | ATTTTTCCTTCCCCACATCA+TGG | + | chr1_2:7510366-7510385 | Msa0053100:intron | 40.0% |
| ! | TTTTTCCTTCCCCACATCAT+GGG | + | chr1_2:7510367-7510386 | Msa0053100:intron | 40.0% |
| TAAAGTCATTTGGGAGAGAG+AGG | - | chr1_2:7510511-7510530 | None:intergenic | 40.0% | |
| ! | CTGTACTTTTATGGCATGTG+TGG | + | chr1_2:7510747-7510766 | Msa0053100:CDS | 40.0% |
| ! | GTACTTTTATGGCATGTGTG+GGG | + | chr1_2:7510749-7510768 | Msa0053100:CDS | 40.0% |
| TTGTGGTGATAGGAAATTCG+CGG | + | chr1_2:7510876-7510895 | Msa0053100:intron | 40.0% | |
| GCTTTGACTATATCTGACTC+CGG | - | chr1_2:7510915-7510934 | None:intergenic | 40.0% | |
| ATATAGTCAAAGCATGCCGA+AGG | + | chr1_2:7510922-7510941 | Msa0053100:CDS | 40.0% | |
| TATAGTCAAAGCATGCCGAA+GGG | + | chr1_2:7510923-7510942 | Msa0053100:CDS | 40.0% | |
| GTGGGATTGGATAATAATGC+AGG | - | chr1_2:7511049-7511068 | None:intergenic | 40.0% | |
| GATAAATTACTGGGTGGGAT+TGG | - | chr1_2:7511062-7511081 | None:intergenic | 40.0% | |
| AAAGCGGTAAAATGAGGAAC+TGG | - | chr1_2:7511155-7511174 | None:intergenic | 40.0% | |
| !! | TCCTCATTTTACCGCTTTTC+TGG | + | chr1_2:7511157-7511176 | Msa0053100:intron | 40.0% |
| !! | CCTCATTTTACCGCTTTTCT+GGG | + | chr1_2:7511158-7511177 | Msa0053100:intron | 40.0% |
| !! | TTTTTCGGTTCCCAGAAAAG+CGG | - | chr1_2:7511171-7511190 | None:intergenic | 40.0% |
| ! | GACAAGCAGACAAGCTTTTT+CGG | - | chr1_2:7511186-7511205 | None:intergenic | 40.0% |
| AATCTTCAATGCATGTACGG+TGG | + | chr1_2:7511448-7511467 | Msa0053100:intron | 40.0% | |
| TTGCCCTTCGAAAATCATGT+TGG | + | chr1_2:7511657-7511676 | Msa0053100:intron | 40.0% | |
| CGGTTCCTTGAAGCTATTAA+TGG | + | chr1_2:7511871-7511890 | Msa0053100:CDS | 40.0% | |
| GGTTTCTCAATCCTTCACTT+AGG | - | chr1_2:7512199-7512218 | None:intergenic | 40.0% | |
| GATTGAGAAACCTACATTGC+CGG | + | chr1_2:7512207-7512226 | Msa0053100:CDS | 40.0% | |
| AAATTAGTGACCGGCAATGT+AGG | - | chr1_2:7512220-7512239 | None:intergenic | 40.0% | |
| ! | TGCCGGTCACTAATTTTTGT+TGG | + | chr1_2:7512224-7512243 | Msa0053100:CDS | 40.0% |
| ! | GCCGGTCACTAATTTTTGTT+GGG | + | chr1_2:7512225-7512244 | Msa0053100:CDS | 40.0% |
| CCCCAACAAAAATTAGTGAC+CGG | - | chr1_2:7512229-7512248 | None:intergenic | 40.0% | |
| ! | CCGGTCACTAATTTTTGTTG+GGG | + | chr1_2:7512226-7512245 | Msa0053100:CDS | 40.0% |
| TATGTCTCCATATCACTCAG+AGG | + | chr1_2:7512250-7512269 | Msa0053100:CDS | 40.0% | |
| AATTACAGGTTCAAGCATGC+GGG | + | chr1_2:7512425-7512444 | Msa0053100:intron | 40.0% | |
| CCATTGGTATTAACATGGCA+TGG | - | chr1_2:7512474-7512493 | None:intergenic | 40.0% | |
| CCATGCCATGTTAATACCAA+TGG | + | chr1_2:7512471-7512490 | Msa0053100:CDS | 40.0% | |
| ! | ACCAATGGAGTACTTTCTCA+TGG | + | chr1_2:7512486-7512505 | Msa0053100:CDS | 40.0% |
| ! | CCAATGGAGTACTTTCTCAT+GGG | + | chr1_2:7512487-7512506 | Msa0053100:CDS | 40.0% |
| GAGTACTTTCTCATGGGATA+TGG | + | chr1_2:7512493-7512512 | Msa0053100:CDS | 40.0% | |
| AGCTCAGGAGAAATACAAGA+TGG | - | chr1_2:7512568-7512587 | None:intergenic | 40.0% | |
| !!! | CTTTTTTCACCCGAGAGTAT+GGG | + | chr1_2:7512586-7512605 | Msa0053100:CDS | 40.0% |
| TGCCGTATGGTTGTAGATAA+TGG | + | chr1_2:7512765-7512784 | Msa0053100:three_prime_UTR | 40.0% | |
| GCCGTATGGTTGTAGATAAT+GGG | + | chr1_2:7512766-7512785 | Msa0053100:three_prime_UTR | 40.0% | |
| TCTGTCTCTGTTGCTGTGTA+TGG | + | chr1_2:7509374-7509393 | Msa0053100:CDS | 45.0% | |
| CTGTCTCTGTTGCTGTGTAT+GGG | + | chr1_2:7509375-7509394 | Msa0053100:CDS | 45.0% | |
| TGTCTCTGTTGCTGTGTATG+GGG | + | chr1_2:7509376-7509395 | Msa0053100:CDS | 45.0% | |
| !! | TGATAAGAGCTGGTTTGTCC+TGG | - | chr1_2:7509403-7509422 | None:intergenic | 45.0% |
| TCAGGATAGGTGATAAGAGC+TGG | - | chr1_2:7509413-7509432 | None:intergenic | 45.0% | |
| GCAGAAGATGATAAGCAACC+AGG | - | chr1_2:7510038-7510057 | None:intergenic | 45.0% | |
| ! | CTTAGCGGATCAAATAGCTG+AGG | + | chr1_2:7510129-7510148 | Msa0053100:CDS | 45.0% |
| AGGGTTAGATCCCATGATGT+GGG | - | chr1_2:7510380-7510399 | None:intergenic | 45.0% | |
| ATGTGTATGGGAGTAACTGC+TGG | + | chr1_2:7510436-7510455 | Msa0053100:CDS | 45.0% | |
| TGTGTATGGGAGTAACTGCT+GGG | + | chr1_2:7510437-7510456 | Msa0053100:CDS | 45.0% | |
| ATTTGGGAGAGAGAGGAAGA+CGG | - | chr1_2:7510504-7510523 | None:intergenic | 45.0% | |
| AAGAACCATCTTGGTCTGAG+TGG | + | chr1_2:7510619-7510638 | Msa0053100:CDS | 45.0% | |
| TACAACCACTCAGACCAAGA+TGG | - | chr1_2:7510627-7510646 | None:intergenic | 45.0% | |
| GTCTGAGTGGTTGTACAACA+AGG | + | chr1_2:7510632-7510651 | Msa0053100:CDS | 45.0% | |
| !!! | GCTGAAGCGGTATTTTAGCA+AGG | + | chr1_2:7510788-7510807 | Msa0053100:CDS | 45.0% |
| ATGTAGGGACTGGGTTTAAG+TGG | + | chr1_2:7510968-7510987 | Msa0053100:intron | 45.0% | |
| ACGAATAGATTTGCCCACCA+TGG | + | chr1_2:7511007-7511026 | Msa0053100:intron | 45.0% | |
| TATGAGCATCTGACCATGGT+GGG | - | chr1_2:7511023-7511042 | None:intergenic | 45.0% | |
| ATATGAGCATCTGACCATGG+TGG | - | chr1_2:7511024-7511043 | None:intergenic | 45.0% | |
| GACATATGAGCATCTGACCA+TGG | - | chr1_2:7511027-7511046 | None:intergenic | 45.0% | |
| CCCAGAAAAGCGGTAAAATG+AGG | - | chr1_2:7511161-7511180 | None:intergenic | 45.0% | |
| AGCTTCAGAAAACCAGCAAC+AGG | - | chr1_2:7511780-7511799 | None:intergenic | 45.0% | |
| AGAGGCAAAGCTTGAATGTG+TGG | + | chr1_2:7511848-7511867 | Msa0053100:CDS | 45.0% | |
| CTCAATCCTTCACTTAGGTC+AGG | - | chr1_2:7512194-7512213 | None:intergenic | 45.0% | |
| ACGATTCAGTGCCTTAGTTG+AGG | + | chr1_2:7512301-7512320 | Msa0053100:CDS | 45.0% | |
| !! | CCCATGAGAAAGTACTCCAT+TGG | - | chr1_2:7512490-7512509 | None:intergenic | 45.0% |
| TCATGGGATATGGTCTGTAC+AGG | + | chr1_2:7512503-7512522 | Msa0053100:CDS | 45.0% | |
| ATGGACTCAAGGGACTTCTT+GGG | - | chr1_2:7512549-7512568 | None:intergenic | 45.0% | |
| !!! | GCTTTTTTCACCCGAGAGTA+TGG | + | chr1_2:7512585-7512604 | Msa0053100:CDS | 45.0% |
| !! | ATGAAATAGGGAGTGCCGTA+TGG | + | chr1_2:7512752-7512771 | Msa0053100:three_prime_UTR | 45.0% |
| ATCAGACGTCTCCTGCTTTC+AGG | + | chr1_2:7509852-7509871 | Msa0053100:intron | 50.0% | |
| TCAGACGTCTCCTGCTTTCA+GGG | + | chr1_2:7509853-7509872 | Msa0053100:intron | 50.0% | |
| TAGATCCCATGATGTGGGGA+AGG | - | chr1_2:7510375-7510394 | None:intergenic | 50.0% | |
| GGGTTAGATCCCATGATGTG+GGG | - | chr1_2:7510379-7510398 | None:intergenic | 50.0% | |
| CAGGGTTAGATCCCATGATG+TGG | - | chr1_2:7510381-7510400 | None:intergenic | 50.0% | |
| GTGTATGGGAGTAACTGCTG+GGG | + | chr1_2:7510438-7510457 | Msa0053100:CDS | 50.0% | |
| ! | CTTTTATGGCATGTGTGGGG+TGG | + | chr1_2:7510752-7510771 | Msa0053100:CDS | 50.0% |
| TGGTGATAGGAAATTCGCGG+TGG | + | chr1_2:7510879-7510898 | Msa0053100:intron | 50.0% | |
| TCGCGGTGGTACTCAATTTC+CGG | + | chr1_2:7510893-7510912 | Msa0053100:CDS | 50.0% | |
| CCAGCAACAGGTAAAACCCA+GGG | - | chr1_2:7511768-7511787 | None:intergenic | 50.0% | |
| ACCAGCAACAGGTAAAACCC+AGG | - | chr1_2:7511769-7511788 | None:intergenic | 50.0% | |
| GGCAAAGCTTGAATGTGTGG+CGG | + | chr1_2:7511851-7511870 | Msa0053100:CDS | 50.0% | |
| !! | TTTTGAGGGTGGGGTGTTTC+AGG | + | chr1_2:7511934-7511953 | Msa0053100:intron | 50.0% |
| AGGAGACCTGACCTAAGTGA+AGG | + | chr1_2:7512185-7512204 | Msa0053100:intron | 50.0% | |
| ! | TGGAGTGCCTCTGAGTGATA+TGG | - | chr1_2:7512260-7512279 | None:intergenic | 50.0% |
| ATGCGGGTCAATGGTAACAG+AGG | + | chr1_2:7512441-7512460 | Msa0053100:CDS | 50.0% | |
| ! | GATGGACTCAAGGGACTTCT+TGG | - | chr1_2:7512550-7512569 | None:intergenic | 50.0% |
| CTCTCGGGTGAAAAAAGCTC+AGG | - | chr1_2:7512583-7512602 | None:intergenic | 50.0% | |
| TGTTGCTGTGTATGGGGACC+AGG | + | chr1_2:7509382-7509401 | Msa0053100:CDS | 55.0% | |
| CAGACGTCTCCTGCTTTCAG+GGG | + | chr1_2:7509854-7509873 | Msa0053100:intron | 55.0% | |
| CATTAGTCCACCTGGGCATG+AGG | + | chr1_2:7509933-7509952 | Msa0053100:CDS | 55.0% | |
| AAGCTACAGACCTCATGCCC+AGG | - | chr1_2:7509946-7509965 | None:intergenic | 55.0% | |
| TGGCATGTGTGGGGTGGTAA+AGG | + | chr1_2:7510758-7510777 | Msa0053100:CDS | 55.0% | |
| GCAACAGGTAAAACCCAGGG+CGG | - | chr1_2:7511765-7511784 | None:intergenic | 55.0% | |
| ! | CCCTGGGTTTTACCTGTTGC+TGG | + | chr1_2:7511765-7511784 | Msa0053100:intron | 55.0% |
| GGTTCAAGCATGCGGGTCAA+TGG | + | chr1_2:7512432-7512451 | Msa0053100:intron | 55.0% | |
| ATGGTCTGTACAGGCCATCC+AGG | + | chr1_2:7512512-7512531 | Msa0053100:CDS | 55.0% | |
| TCTTGGGCTGACACTGTTCC+TGG | - | chr1_2:7512533-7512552 | None:intergenic | 55.0% | |
| CTACAGACCTCATGCCCAGG+TGG | - | chr1_2:7509943-7509962 | None:intergenic | 60.0% | |
| ATCGTGCTAAACGCCGCCCT+GGG | + | chr1_2:7511749-7511768 | Msa0053100:intron | 60.0% | |
| GGGCTGACACTGTTCCTGGA+TGG | - | chr1_2:7512529-7512548 | None:intergenic | 60.0% | |
| GATCGTGCTAAACGCCGCCC+TGG | + | chr1_2:7511748-7511767 | Msa0053100:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 7509296 | 7513136 | 7509296 | ID=Msa0053100;Name=Msa0053100 |
| chr1_2 | mRNA | 7509296 | 7513136 | 7509296 | ID=Msa0053100-mRNA-1;Parent=Msa0053100;Name=Msa0053100-mRNA-1;_AED=0.25;_eAED=0.25;_QI=39|1|1|1|1|1|10|482|331 |
| chr1_2 | exon | 7509296 | 7509446 | 7509296 | ID=Msa0053100-mRNA-1:exon:2569;Parent=Msa0053100-mRNA-1 |
| chr1_2 | exon | 7509857 | 7509954 | 7509857 | ID=Msa0053100-mRNA-1:exon:2570;Parent=Msa0053100-mRNA-1 |
| chr1_2 | exon | 7510079 | 7510167 | 7510079 | ID=Msa0053100-mRNA-1:exon:2571;Parent=Msa0053100-mRNA-1 |
| chr1_2 | exon | 7510423 | 7510483 | 7510423 | ID=Msa0053100-mRNA-1:exon:2572;Parent=Msa0053100-mRNA-1 |
| chr1_2 | exon | 7510567 | 7510653 | 7510567 | ID=Msa0053100-mRNA-1:exon:2573;Parent=Msa0053100-mRNA-1 |
| chr1_2 | exon | 7510732 | 7510809 | 7510732 | ID=Msa0053100-mRNA-1:exon:2574;Parent=Msa0053100-mRNA-1 |
| chr1_2 | exon | 7510888 | 7510944 | 7510888 | ID=Msa0053100-mRNA-1:exon:2575;Parent=Msa0053100-mRNA-1 |
| chr1_2 | exon | 7511838 | 7511893 | 7511838 | ID=Msa0053100-mRNA-1:exon:2576;Parent=Msa0053100-mRNA-1 |
| chr1_2 | exon | 7512187 | 7512322 | 7512187 | ID=Msa0053100-mRNA-1:exon:2577;Parent=Msa0053100-mRNA-1 |
| chr1_2 | exon | 7512433 | 7513136 | 7512433 | ID=Msa0053100-mRNA-1:exon:2578;Parent=Msa0053100-mRNA-1 |
| chr1_2 | five_prime_UTR | 7509296 | 7509334 | 7509296 | ID=Msa0053100-mRNA-1:five_prime_utr;Parent=Msa0053100-mRNA-1 |
| chr1_2 | CDS | 7509335 | 7509446 | 7509335 | ID=Msa0053100-mRNA-1:cds;Parent=Msa0053100-mRNA-1 |
| chr1_2 | CDS | 7509857 | 7509954 | 7509857 | ID=Msa0053100-mRNA-1:cds;Parent=Msa0053100-mRNA-1 |
| chr1_2 | CDS | 7510079 | 7510167 | 7510079 | ID=Msa0053100-mRNA-1:cds;Parent=Msa0053100-mRNA-1 |
| chr1_2 | CDS | 7510423 | 7510483 | 7510423 | ID=Msa0053100-mRNA-1:cds;Parent=Msa0053100-mRNA-1 |
| chr1_2 | CDS | 7510567 | 7510653 | 7510567 | ID=Msa0053100-mRNA-1:cds;Parent=Msa0053100-mRNA-1 |
| chr1_2 | CDS | 7510732 | 7510809 | 7510732 | ID=Msa0053100-mRNA-1:cds;Parent=Msa0053100-mRNA-1 |
| chr1_2 | CDS | 7510888 | 7510944 | 7510888 | ID=Msa0053100-mRNA-1:cds;Parent=Msa0053100-mRNA-1 |
| chr1_2 | CDS | 7511838 | 7511893 | 7511838 | ID=Msa0053100-mRNA-1:cds;Parent=Msa0053100-mRNA-1 |
| chr1_2 | CDS | 7512187 | 7512322 | 7512187 | ID=Msa0053100-mRNA-1:cds;Parent=Msa0053100-mRNA-1 |
| chr1_2 | CDS | 7512433 | 7512654 | 7512433 | ID=Msa0053100-mRNA-1:cds;Parent=Msa0053100-mRNA-1 |
| chr1_2 | three_prime_UTR | 7512655 | 7513136 | 7512655 | ID=Msa0053100-mRNA-1:three_prime_utr;Parent=Msa0053100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
