Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0005090 | sp|Q7FRS8|CNBLA_ARATH | 60.311 | 257 | 79 | 2 | 9 | 265 | 20 | 253 | 1.03e-103 | 305 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005090 | Msa0053150 | 0.919090 | 6.947677e-87 | -8.615850e-47 |
| Msa0005090 | Msa0098610 | 0.882757 | 7.970615e-71 | -8.615850e-47 |
| Msa0005090 | Msa0098640 | 0.802353 | 5.839737e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0005090 | MtrunA17_Chr1g0151621 | 89.925 | 268 | 8 | 1 | 1 | 268 | 1 | 249 | 1.10e-174 | 481 |
| Msa0005090 | MtrunA17_Chr8g0341941 | 54.475 | 257 | 94 | 3 | 12 | 264 | 14 | 251 | 4.54e-86 | 257 |
| Msa0005090 | MtrunA17_Chr4g0076551 | 66.667 | 180 | 60 | 0 | 86 | 265 | 44 | 223 | 2.82e-84 | 251 |
| Msa0005090 | MtrunA17_Chr5g0446931 | 66.298 | 181 | 61 | 0 | 86 | 266 | 43 | 223 | 2.88e-84 | 251 |
| Msa0005090 | MtrunA17_Chr3g0102821 | 66.667 | 180 | 60 | 0 | 86 | 265 | 43 | 222 | 3.10e-84 | 251 |
| Msa0005090 | MtrunA17_Chr4g0055421 | 64.246 | 179 | 64 | 0 | 86 | 264 | 28 | 206 | 1.10e-78 | 237 |
| Msa0005090 | MtrunA17_Chr2g0290771 | 61.326 | 181 | 70 | 0 | 85 | 265 | 7 | 187 | 2.29e-78 | 235 |
| Msa0005090 | MtrunA17_Chr8g0388331 | 61.111 | 180 | 70 | 0 | 86 | 265 | 28 | 207 | 1.08e-76 | 231 |
| Msa0005090 | MtrunA17_Chr8g0346911 | 58.011 | 181 | 76 | 0 | 86 | 266 | 51 | 231 | 2.91e-72 | 221 |
| Msa0005090 | MtrunA17_Chr2g0290751 | 60.000 | 165 | 66 | 0 | 86 | 250 | 46 | 210 | 4.16e-68 | 209 |
| Msa0005090 | MtrunA17_Chr2g0290781 | 55.556 | 180 | 80 | 0 | 86 | 265 | 48 | 227 | 2.52e-67 | 209 |
| Msa0005090 | MtrunA17_Chr2g0290761 | 59.394 | 165 | 67 | 0 | 86 | 250 | 46 | 210 | 1.09e-66 | 206 |
| Msa0005090 | MtrunA17_Chr4g0063121 | 44.068 | 177 | 79 | 1 | 88 | 264 | 7 | 163 | 1.52e-46 | 155 |
| Msa0005090 | MtrunA17_Chr3g0126801 | 66.667 | 96 | 32 | 0 | 170 | 265 | 6 | 101 | 2.17e-42 | 141 |
| Msa0005090 | MtrunA17_Chr3g0126811 | 50.758 | 132 | 42 | 2 | 36 | 167 | 2 | 110 | 2.96e-32 | 115 |
| Msa0005090 | MtrunA17_Chr5g0399921 | 59.770 | 87 | 35 | 0 | 87 | 173 | 28 | 114 | 3.46e-27 | 102 |
| Msa0005090 | MtrunA17_Chr8g0388321 | 43.697 | 119 | 42 | 2 | 78 | 187 | 62 | 164 | 6.92e-22 | 89.7 |
| Msa0005090 | MtrunA17_Chr8g0388311 | 49.296 | 71 | 36 | 0 | 190 | 260 | 1 | 71 | 1.49e-20 | 83.6 |
| Msa0005090 | MtrunA17_Chr5g0399931 | 55.556 | 72 | 32 | 0 | 190 | 261 | 1 | 72 | 8.51e-20 | 81.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0005090 | AT4G33000.2 | 59.770 | 261 | 82 | 2 | 5 | 265 | 6 | 243 | 4.84e-105 | 305 |
| Msa0005090 | AT4G33000.1 | 60.311 | 257 | 79 | 2 | 9 | 265 | 20 | 253 | 1.04e-104 | 305 |
| Msa0005090 | AT5G24270.5 | 68.927 | 177 | 55 | 0 | 85 | 261 | 6 | 182 | 6.09e-86 | 255 |
| Msa0005090 | AT5G24270.4 | 67.778 | 180 | 58 | 0 | 86 | 265 | 32 | 211 | 9.08e-85 | 253 |
| Msa0005090 | AT5G24270.1 | 67.778 | 180 | 58 | 0 | 86 | 265 | 32 | 211 | 9.08e-85 | 253 |
| Msa0005090 | AT5G24270.2 | 67.778 | 180 | 58 | 0 | 86 | 265 | 32 | 211 | 9.08e-85 | 253 |
| Msa0005090 | AT4G26570.1 | 66.111 | 180 | 61 | 0 | 86 | 265 | 43 | 222 | 7.39e-84 | 251 |
| Msa0005090 | AT4G26570.2 | 64.674 | 184 | 61 | 1 | 86 | 265 | 43 | 226 | 8.70e-82 | 246 |
| Msa0005090 | AT5G55990.1 | 65.556 | 180 | 62 | 0 | 86 | 265 | 43 | 222 | 1.21e-81 | 245 |
| Msa0005090 | AT5G55990.2 | 65.556 | 180 | 62 | 0 | 86 | 265 | 43 | 222 | 1.21e-81 | 245 |
| Msa0005090 | AT5G47100.1 | 64.444 | 180 | 64 | 0 | 86 | 265 | 28 | 207 | 4.94e-79 | 238 |
| Msa0005090 | AT1G64480.2 | 61.667 | 180 | 69 | 0 | 86 | 265 | 32 | 211 | 1.15e-77 | 234 |
| Msa0005090 | AT1G64480.3 | 61.667 | 180 | 69 | 0 | 86 | 265 | 32 | 211 | 1.15e-77 | 234 |
| Msa0005090 | AT1G64480.1 | 61.667 | 180 | 69 | 0 | 86 | 265 | 32 | 211 | 1.15e-77 | 234 |
| Msa0005090 | AT4G17615.4 | 62.778 | 180 | 67 | 0 | 86 | 265 | 28 | 207 | 8.12e-77 | 232 |
| Msa0005090 | AT4G17615.1 | 62.778 | 180 | 67 | 0 | 86 | 265 | 28 | 207 | 8.12e-77 | 232 |
| Msa0005090 | AT4G17615.5 | 62.778 | 180 | 67 | 0 | 86 | 265 | 28 | 207 | 8.12e-77 | 232 |
| Msa0005090 | AT4G33000.5 | 56.398 | 211 | 69 | 2 | 5 | 215 | 6 | 193 | 2.32e-74 | 226 |
| Msa0005090 | AT4G33000.4 | 56.667 | 210 | 68 | 2 | 5 | 214 | 6 | 192 | 2.70e-74 | 225 |
| Msa0005090 | AT4G33000.6 | 56.667 | 210 | 68 | 2 | 5 | 214 | 6 | 192 | 2.70e-74 | 225 |
| Msa0005090 | AT1G64480.4 | 62.048 | 166 | 63 | 0 | 86 | 251 | 32 | 197 | 3.59e-71 | 217 |
| Msa0005090 | AT4G17615.3 | 60.465 | 172 | 68 | 0 | 86 | 257 | 28 | 199 | 1.18e-68 | 213 |
| Msa0005090 | AT5G24270.3 | 64.286 | 154 | 55 | 0 | 108 | 261 | 7 | 160 | 3.22e-68 | 209 |
| Msa0005090 | AT4G16350.2 | 53.631 | 179 | 79 | 1 | 86 | 264 | 41 | 215 | 1.29e-63 | 199 |
| Msa0005090 | AT4G16350.1 | 53.631 | 179 | 79 | 1 | 86 | 264 | 41 | 215 | 1.29e-63 | 199 |
| Msa0005090 | AT4G17615.2 | 60.131 | 153 | 61 | 0 | 114 | 266 | 14 | 166 | 2.25e-62 | 194 |
| Msa0005090 | AT4G26560.1 | 48.936 | 188 | 83 | 2 | 91 | 265 | 23 | 210 | 5.21e-58 | 184 |
| Msa0005090 | AT4G01420.1 | 47.399 | 173 | 91 | 0 | 89 | 261 | 30 | 202 | 2.65e-52 | 169 |
| Msa0005090 | AT5G47100.2 | 63.281 | 128 | 47 | 0 | 86 | 213 | 28 | 155 | 1.23e-51 | 167 |
| Msa0005090 | AT4G33000.3 | 51.829 | 164 | 56 | 2 | 5 | 168 | 6 | 146 | 2.01e-48 | 158 |
| Msa0005090 | AT4G01420.2 | 47.239 | 163 | 86 | 0 | 89 | 251 | 30 | 192 | 2.70e-48 | 159 |
Find 66 sgRNAs with CRISPR-Local
Find 347 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTAGATTATGTTTCTGTTTA+TGG | 0.035791 | 1_1:-7556347 | Msa0005080:intron |
| CGCAAGTAAGCTTGTCTTTA+GGG | 0.199731 | 1_1:+7562245 | Msa0005090:three_prime_UTR |
| TAATCAAACCTATGAATTAT+AGG | 0.236206 | 1_1:-7562115 | None:intergenic |
| CTAGCCTCTATGATCGAAAT+TGG | 0.270825 | 1_1:-7556468 | Msa0005080:intron |
| GGATTGGTTATTGCTGTAAA+TGG | 0.273428 | 1_1:+7561944 | Msa0005090:three_prime_UTR |
| CGGTCACTCTTTATGTATAA+TGG | 0.295450 | 1_1:-7562177 | None:intergenic |
| CCGCAAGTAAGCTTGTCTTT+AGG | 0.302808 | 1_1:+7562244 | Msa0005090:three_prime_UTR |
| CAGGATGTATCTAGAGGAAT+AGG | 0.310364 | 1_1:+7556619 | Msa0005090:intron |
| GGCCCTTAGGGTATGATTGC+AGG | 0.326821 | 1_1:-7562022 | None:intergenic |
| CTCTATGACCTGAGACAAAC+AGG | 0.330842 | 1_1:+7560527 | Msa0005090:CDS |
| CATGAAAACTTGGTGGCTTT+AGG | 0.338760 | 1_1:-7562043 | None:intergenic |
| CTTGGTGGCTTTAGGCCCTT+AGG | 0.347753 | 1_1:-7562035 | None:intergenic |
| GCCACTCATAGCTGTCTTTG+AGG | 0.377672 | 1_1:+7556666 | Msa0005090:CDS |
| ATTTGTAGCCTATAATTCAT+AGG | 0.385610 | 1_1:+7562107 | Msa0005090:three_prime_UTR |
| GTCTATTTGAGGCAAATGAT+TGG | 0.407101 | 1_1:+7561923 | Msa0005090:three_prime_UTR |
| AAGAAGGGTTATGATGGTTA+TGG | 0.412803 | 1_1:-7556435 | Msa0005080:intron |
| CTAAAGACAAGCTTACTTGC+GGG | 0.423799 | 1_1:-7562243 | None:intergenic |
| AGGATGTATCTAGAGGAATA+GGG | 0.424974 | 1_1:+7556620 | Msa0005090:intron |
| GAACCAAAGCATAAAATCAT+TGG | 0.439256 | 1_1:-7562155 | None:intergenic |
| GTAAAATCAGCAAAGAAGAT+TGG | 0.453764 | 1_1:+7561230 | Msa0005090:CDS |
| CAATAAACCCTGTTTGTCTC+AGG | 0.457501 | 1_1:-7560535 | None:intergenic |
| TTGGTTTCAGGTGAAGCAAA+TGG | 0.479980 | 1_1:+7561026 | Msa0005090:intron |
| TTGTTATTTGATAATGATGA+TGG | 0.481087 | 1_1:+7557013 | Msa0005090:CDS |
| AAACACCTACAGCATATTGT+TGG | 0.483900 | 1_1:-7556989 | None:intergenic |
| TAGGCTACAAATATTTCTGT+TGG | 0.488335 | 1_1:-7562096 | None:intergenic |
| ACATACAAAACATGAAAACT+TGG | 0.489189 | 1_1:-7562053 | None:intergenic |
| AATTGGTGATGATGATAAGA+AGG | 0.490633 | 1_1:-7556451 | Msa0005080:intron |
| TTTGAGGCAAATGATTGGAT+TGG | 0.494507 | 1_1:+7561928 | Msa0005090:three_prime_UTR |
| TTTCACTAAAATTAAAGTGT+GGG | 0.502088 | 1_1:+7562313 | Msa0005090:three_prime_UTR |
| CATCCATTGGGGCATAAGGA+TGG | 0.505415 | 1_1:-7560387 | None:intergenic |
| TTGGTGGCTTTAGGCCCTTA+GGG | 0.505508 | 1_1:-7562034 | None:intergenic |
| TACATCTGGTTTCTTGAGCA+AGG | 0.512152 | 1_1:-7556780 | None:intergenic |
| TTTCCATCCTTATGCCCCAA+TGG | 0.516605 | 1_1:+7560384 | Msa0005090:CDS |
| GCACTATTTCAAACCCCAAA+CGG | 0.519503 | 1_1:+7559958 | Msa0005090:CDS |
| AGTAGCTCTGTAATTGATGA+TGG | 0.519726 | 1_1:+7559791 | Msa0005090:CDS |
| GTTCCTGCAATCATACCCTA+AGG | 0.525209 | 1_1:+7562019 | Msa0005090:three_prime_UTR |
| ATTTCACTAAAATTAAAGTG+TGG | 0.529768 | 1_1:+7562312 | Msa0005090:three_prime_UTR |
| TACAAAACATGAAAACTTGG+TGG | 0.533813 | 1_1:-7562050 | None:intergenic |
| GTCATGTTCTTCAAGAGAGA+CGG | 0.538874 | 1_1:-7561274 | None:intergenic |
| ACTACTGAACTCACTTCCTC+TGG | 0.539821 | 1_1:-7560560 | None:intergenic |
| TAAATAAAGTTAAATACACT+TGG | 0.562418 | 1_1:-7562271 | None:intergenic |
| TCTTGAAGCTATTGTTGACA+AGG | 0.562525 | 1_1:+7561095 | Msa0005090:CDS |
| GCTGTAAATGGTAACAACAT+TGG | 0.565233 | 1_1:+7561956 | Msa0005090:three_prime_UTR |
| GATGATAAGAAGGGTTATGA+TGG | 0.576539 | 1_1:-7556441 | Msa0005080:intron |
| ATTGGTGATGATGATAAGAA+GGG | 0.577485 | 1_1:-7556450 | Msa0005080:intron |
| TACAGGGGAATGAGTAGGCA+TGG | 0.577752 | 1_1:-7556503 | Msa0005080:intron |
| TCTGATTTGAAAATAAAACT+AGG | 0.584623 | 1_1:-7561870 | None:intergenic |
| AATTTGCTGACAAACAATCA+TGG | 0.588998 | 1_1:+7561980 | Msa0005090:three_prime_UTR |
| AAAGTTACAGGGGAATGAGT+AGG | 0.590893 | 1_1:-7556508 | Msa0005080:intron |
| ATCACCAATTTCGATCATAG+AGG | 0.600338 | 1_1:+7556464 | Msa0005090:five_prime_UTR |
| GGATGTATCTAGAGGAATAG+GGG | 0.600419 | 1_1:+7556621 | Msa0005090:intron |
| TATATCCAACAATATGCTGT+AGG | 0.601683 | 1_1:+7556984 | Msa0005090:CDS |
| ATTCCACAGGATGTATCTAG+AGG | 0.601973 | 1_1:+7556613 | Msa0005090:intron |
| AAACATAATCTACATAGGAA+AGG | 0.604565 | 1_1:+7556357 | Msa0005090:five_prime_UTR |
| AACAGAAACATAATCTACAT+AGG | 0.605114 | 1_1:+7556352 | Msa0005090:five_prime_UTR |
| GATGGAAAACACTGAGCGCG+TGG | 0.605651 | 1_1:-7560369 | None:intergenic |
| GACGTTGATCAAGACAATGA+TGG | 0.607782 | 1_1:+7561208 | Msa0005090:CDS |
| AACAGGGTTTATTGAGCCAG+AGG | 0.608476 | 1_1:+7560544 | Msa0005090:CDS |
| CCTAAAGACAAGCTTACTTG+CGG | 0.624067 | 1_1:-7562244 | None:intergenic |
| TTCCTGCAATCATACCCTAA+GGG | 0.634095 | 1_1:+7562020 | Msa0005090:three_prime_UTR |
| ATCATTGTCTTGATCAACGT+CGG | 0.634735 | 1_1:-7561206 | None:intergenic |
| TGATGATGGCTTGATTCACA+AGG | 0.635403 | 1_1:+7559805 | Msa0005090:CDS |
| ACCTCAAAGACAGCTATGAG+TGG | 0.672289 | 1_1:-7556667 | None:intergenic |
| AATAAAACTAGGAAACGCAG+TGG | 0.710414 | 1_1:-7561859 | None:intergenic |
| TCTATGACCTGAGACAAACA+GGG | 0.757678 | 1_1:+7560528 | Msa0005090:CDS |
| TTCACTTGAAGATATCACTG+CGG | 0.771017 | 1_1:-7562197 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGAAAAAATTAATTGAAT+CGG | + | chr1_1:7562352-7562371 | Msa0005090:three_prime_UTR | 10.0% |
| !!! | TTTTGAAAATGTAATAGAAA+TGG | - | chr1_1:7559417-7559436 | None:intergenic | 15.0% |
| !!! | ATTTTTTTTCTTTCAATTGT+AGG | + | chr1_1:7559921-7559940 | Msa0005090:intron | 15.0% |
| !!! | ATTTTTGATGAAAAAAGAAA+CGG | + | chr1_1:7560322-7560341 | Msa0005090:CDS | 15.0% |
| !! | TAAACAATATAACTCAAATA+AGG | - | chr1_1:7561156-7561175 | None:intergenic | 15.0% |
| !!! | TAAAATTTTAAAGACTTTAG+AGG | - | chr1_1:7561802-7561821 | None:intergenic | 15.0% |
| !! | TAAATAAAGTTAAATACACT+TGG | - | chr1_1:7562274-7562293 | None:intergenic | 15.0% |
| !! | AAGAAAAAATTAATTGAATC+GGG | + | chr1_1:7562353-7562372 | Msa0005090:three_prime_UTR | 15.0% |
| !! | AATGAATTAGAAAAATGAGT+AGG | - | chr1_1:7556541-7556560 | None:intergenic | 20.0% |
| !! | AAAGTGGAAAATAATTGAAA+TGG | - | chr1_1:7556842-7556861 | None:intergenic | 20.0% |
| !!! | ATTTCAATTATTTTCCACTT+TGG | + | chr1_1:7556841-7556860 | Msa0005090:intron | 20.0% |
| !!! | TTGTTATTTGATAATGATGA+TGG | + | chr1_1:7557013-7557032 | Msa0005090:CDS | 20.0% |
| !! | AACAATAACAAATTGTTCAA+CGG | - | chr1_1:7558444-7558463 | None:intergenic | 20.0% |
| !! | TGTAAGAATAAGAAAAACAA+AGG | - | chr1_1:7558568-7558587 | None:intergenic | 20.0% |
| !!! | AGAAAACTGATTTTGTTTTA+TGG | + | chr1_1:7558588-7558607 | Msa0005090:intron | 20.0% |
| !!! | ATAATTTCTGGTTCTATTAT+CGG | - | chr1_1:7558861-7558880 | None:intergenic | 20.0% |
| !!! | TCTATTACATTTTCAAAACT+AGG | + | chr1_1:7559419-7559438 | Msa0005090:intron | 20.0% |
| !!! | TTAAGTTTGTTAGTTTAGTT+AGG | - | chr1_1:7559565-7559584 | None:intergenic | 20.0% |
| !! | TATCATTAGAGATATATTGT+TGG | - | chr1_1:7559637-7559656 | None:intergenic | 20.0% |
| !! | TACAATTTCATCTACAATAT+AGG | - | chr1_1:7560056-7560075 | None:intergenic | 20.0% |
| !! | TAGATGAAATTGTATTGTAA+TGG | + | chr1_1:7560062-7560081 | Msa0005090:intron | 20.0% |
| !! | AAATATACACTTGAAAATTG+TGG | + | chr1_1:7560765-7560784 | Msa0005090:intron | 20.0% |
| !! | ATTGGTTAATGAAAATAACA+AGG | - | chr1_1:7560850-7560869 | None:intergenic | 20.0% |
| !!! | TTATTTTCATTAACCAATCA+CGG | + | chr1_1:7560852-7560871 | Msa0005090:intron | 20.0% |
| !!! | TATTAAGTGTTTGATTTACT+TGG | + | chr1_1:7561007-7561026 | Msa0005090:intron | 20.0% |
| !!! | ATTTGAGTTATATTGTTTAC+AGG | + | chr1_1:7561157-7561176 | Msa0005090:intron | 20.0% |
| !!! | ATTTTTGCATACTTCAAATA+AGG | - | chr1_1:7561304-7561323 | None:intergenic | 20.0% |
| !! | TATCAATGATTGATATTGTA+TGG | + | chr1_1:7561690-7561709 | Msa0005090:intron | 20.0% |
| !! | TATATTGAAATGTTAACCAT+TGG | + | chr1_1:7561734-7561753 | Msa0005090:intron | 20.0% |
| !!! | TCTGATTTGAAAATAAAACT+AGG | - | chr1_1:7561873-7561892 | None:intergenic | 20.0% |
| !!! | TAGTTTTATTTTCAAATCAG+AGG | + | chr1_1:7561872-7561891 | Msa0005090:CDS | 20.0% |
| !!! | AATGTTTTATTGTCTATTTG+AGG | + | chr1_1:7561912-7561931 | Msa0005090:three_prime_UTR | 20.0% |
| !! | TAATCAAACCTATGAATTAT+AGG | - | chr1_1:7562118-7562137 | None:intergenic | 20.0% |
| !! | ATTTCACTAAAATTAAAGTG+TGG | + | chr1_1:7562312-7562331 | Msa0005090:three_prime_UTR | 20.0% |
| !! | TTTCACTAAAATTAAAGTGT+GGG | + | chr1_1:7562313-7562332 | Msa0005090:three_prime_UTR | 20.0% |
| !! | GTAGATTATGTTTCTGTTTA+TGG | - | chr1_1:7556350-7556369 | Msa0005080:intron | 25.0% |
| ! | AACAGAAACATAATCTACAT+AGG | + | chr1_1:7556352-7556371 | Msa0005090:five_prime_UTR | 25.0% |
| ! | AAACATAATCTACATAGGAA+AGG | + | chr1_1:7556357-7556376 | Msa0005090:five_prime_UTR | 25.0% |
| ! | AATTAGAAAAATGAGTAGGT+AGG | - | chr1_1:7556537-7556556 | None:intergenic | 25.0% |
| !!! | GATTTTTGAGTGTGAAAATT+GGG | - | chr1_1:7556733-7556752 | None:intergenic | 25.0% |
| !!! | AGATTTTTGAGTGTGAAAAT+TGG | - | chr1_1:7556734-7556753 | None:intergenic | 25.0% |
| ! | AATGGAAATCATTGAATGAA+GGG | - | chr1_1:7556824-7556843 | None:intergenic | 25.0% |
| ! | AAATGGAAATCATTGAATGA+AGG | - | chr1_1:7556825-7556844 | None:intergenic | 25.0% |
| !! | TTTTACTGAGGATGAAAAAA+TGG | - | chr1_1:7556903-7556922 | None:intergenic | 25.0% |
| !! | CATTGTTTACTATTTTACTG+AGG | - | chr1_1:7556915-7556934 | None:intergenic | 25.0% |
| ! | CTCAGTAAAATAGTAAACAA+TGG | + | chr1_1:7556913-7556932 | Msa0005090:intron | 25.0% |
| !! | TGTTTAAAACTTTATGCAAG+TGG | + | chr1_1:7557158-7557177 | Msa0005090:intron | 25.0% |
| !! | GTTTAAAACTTTATGCAAGT+GGG | + | chr1_1:7557159-7557178 | Msa0005090:intron | 25.0% |
| !! | TTTAAAACTTTATGCAAGTG+GGG | + | chr1_1:7557160-7557179 | Msa0005090:intron | 25.0% |
| !! | TCCCAAAATTACATTTTAGA+GGG | + | chr1_1:7557319-7557338 | Msa0005090:intron | 25.0% |
| !!! | CTTGTCCTATAGTTTTATAT+GGG | + | chr1_1:7557424-7557443 | Msa0005090:intron | 25.0% |
| !!! | TGACATTCATTTTAATGTCA+AGG | + | chr1_1:7558406-7558425 | Msa0005090:intron | 25.0% |
| !! | TGGTAACTAACTTTAAGAAA+TGG | - | chr1_1:7558650-7558669 | None:intergenic | 25.0% |
| ! | TATAATCTATTGGAAGATTC+TGG | - | chr1_1:7558670-7558689 | None:intergenic | 25.0% |
| ! | TCACTGAAGTTATAATCTAT+TGG | - | chr1_1:7558680-7558699 | None:intergenic | 25.0% |
| ! | TCAAATTATAGAGAATTGCT+TGG | - | chr1_1:7558790-7558809 | None:intergenic | 25.0% |
| !!! | TTGAAACTTAGAAGTATCTT+TGG | - | chr1_1:7559313-7559332 | None:intergenic | 25.0% |
| ! | AAATAAATCAGTGACAGAAA+TGG | - | chr1_1:7559358-7559377 | None:intergenic | 25.0% |
| !! | TTACATTTTCAAAACTAGGT+CGG | + | chr1_1:7559423-7559442 | Msa0005090:intron | 25.0% |
| ! | TGTTAAATGTAGTTACAAGT+TGG | - | chr1_1:7559610-7559629 | None:intergenic | 25.0% |
| ! | ACTTTGAATAACAAAAGCTT+TGG | + | chr1_1:7559685-7559704 | Msa0005090:intron | 25.0% |
| !!! | AAAGCTTTGGTTTGAATAAT+TGG | + | chr1_1:7559698-7559717 | Msa0005090:intron | 25.0% |
| !!! | TTTTTTCTTTCAATTGTAGG+TGG | + | chr1_1:7559924-7559943 | Msa0005090:intron | 25.0% |
| ! | GCATTATAATATGCTTTGAT+CGG | + | chr1_1:7560180-7560199 | Msa0005090:intron | 25.0% |
| ! | TTAACACATTAGTTCATTCA+TGG | - | chr1_1:7560273-7560292 | None:intergenic | 25.0% |
| ! | AAATTCCATGTTTCTTCTAT+AGG | + | chr1_1:7560291-7560310 | Msa0005090:intron | 25.0% |
| ! | AAAAACCTATAGAAGAAACA+TGG | - | chr1_1:7560299-7560318 | None:intergenic | 25.0% |
| !!! | AGTCTATTTTTTCATCCATT+GGG | - | chr1_1:7560402-7560421 | None:intergenic | 25.0% |
| ! | AACTGCAAAATTATCATCAT+GGG | - | chr1_1:7560498-7560517 | None:intergenic | 25.0% |
| ! | AGGTTAAGGAATATAATTTC+AGG | + | chr1_1:7560658-7560677 | Msa0005090:intron | 25.0% |
| ! | CACACAATTTAGACAATTAA+TGG | - | chr1_1:7560707-7560726 | None:intergenic | 25.0% |
| ! | GTATATTTGAACATAAATCG+TGG | - | chr1_1:7560753-7560772 | None:intergenic | 25.0% |
| ! | TCTAAATTGTTGTCGAAATT+TGG | + | chr1_1:7560911-7560930 | Msa0005090:intron | 25.0% |
| !!! | AATGGTTATAGCTATTTTGA+TGG | + | chr1_1:7561044-7561063 | Msa0005090:CDS | 25.0% |
| ! | ATAAGTGTTTATGCTATAAG+CGG | - | chr1_1:7561406-7561425 | None:intergenic | 25.0% |
| ! | TCAGAATAGCTTATGAAAAT+AGG | - | chr1_1:7561505-7561524 | None:intergenic | 25.0% |
| ! | AAATAAGCCGAAACAATTTA+TGG | + | chr1_1:7561536-7561555 | Msa0005090:intron | 25.0% |
| ! | ACATACAAAACATGAAAACT+TGG | - | chr1_1:7562056-7562075 | None:intergenic | 25.0% |
| !! | TTCATGTTTTGTATGTTTGA+AGG | + | chr1_1:7562060-7562079 | Msa0005090:three_prime_UTR | 25.0% |
| ! | ATTTGTAGCCTATAATTCAT+AGG | + | chr1_1:7562107-7562126 | Msa0005090:three_prime_UTR | 25.0% |
| !! | TAACCAATGATTTTATGCTT+TGG | + | chr1_1:7562152-7562171 | Msa0005090:three_prime_UTR | 25.0% |
| !! | ATTGGTGATGATGATAAGAA+GGG | - | chr1_1:7556453-7556472 | Msa0005080:intron | 30.0% |
| !! | AATTGGTGATGATGATAAGA+AGG | - | chr1_1:7556454-7556473 | Msa0005080:intron | 30.0% |
| TAGGTAGGTAAAAAGTTACA+GGG | - | chr1_1:7556522-7556541 | Msa0005080:intron | 30.0% | |
| ATGAAATGAGTAGTTACATC+TGG | - | chr1_1:7556797-7556816 | None:intergenic | 30.0% | |
| ATGGAAATCATTGAATGAAG+GGG | - | chr1_1:7556823-7556842 | None:intergenic | 30.0% | |
| GTAAAATAGTAAACAATGGC+AGG | + | chr1_1:7556917-7556936 | Msa0005090:intron | 30.0% | |
| TATATCCAACAATATGCTGT+AGG | + | chr1_1:7556984-7557003 | Msa0005090:CDS | 30.0% | |
| !! | ATAATGATGATGGTATGTAC+AGG | + | chr1_1:7557023-7557042 | Msa0005090:intron | 30.0% |
| ACCATAATAATTGATCACGT+TGG | + | chr1_1:7557068-7557087 | Msa0005090:intron | 30.0% | |
| TCCAACGTGATCAATTATTA+TGG | - | chr1_1:7557072-7557091 | None:intergenic | 30.0% | |
| TTAATAGACCATATCAAAGC+TGG | - | chr1_1:7557193-7557212 | None:intergenic | 30.0% | |
| TACAATAAAGTTGAGCAGTT+AGG | - | chr1_1:7557221-7557240 | None:intergenic | 30.0% | |
| ! | CTCCCAAAATTACATTTTAG+AGG | + | chr1_1:7557318-7557337 | Msa0005090:intron | 30.0% |
| !!! | CCCCTCTAAAATGTAATTTT+GGG | - | chr1_1:7557323-7557342 | None:intergenic | 30.0% |
| !! | CCCAAAATTACATTTTAGAG+GGG | + | chr1_1:7557320-7557339 | Msa0005090:intron | 30.0% |
| !!! | ACCCCTCTAAAATGTAATTT+TGG | - | chr1_1:7557324-7557343 | None:intergenic | 30.0% |
| GAGTTAATATACCCCTTTAA+AGG | + | chr1_1:7557387-7557406 | Msa0005090:intron | 30.0% | |
| TACAAATCAAGGCCTTTAAA+GGG | - | chr1_1:7557402-7557421 | None:intergenic | 30.0% | |
| TTACAAATCAAGGCCTTTAA+AGG | - | chr1_1:7557403-7557422 | None:intergenic | 30.0% | |
| !!! | GCTTGTCCTATAGTTTTATA+TGG | + | chr1_1:7557423-7557442 | Msa0005090:intron | 30.0% |
| !!! | TCCTATAGTTTTATATGGGA+TGG | + | chr1_1:7557428-7557447 | Msa0005090:intron | 30.0% |
| TCCATCCCATATAAAACTAT+AGG | - | chr1_1:7557432-7557451 | None:intergenic | 30.0% | |
| GAAATGAGGTTATATCATGT+GGG | - | chr1_1:7557514-7557533 | None:intergenic | 30.0% | |
| AGGGTTATATTGTATATTGC+TGG | - | chr1_1:7557553-7557572 | None:intergenic | 30.0% | |
| ACAATATAACCCTTGTCTTT+AGG | + | chr1_1:7557560-7557579 | Msa0005090:intron | 30.0% | |
| AATCGAAGAAGAGATTTAAC+GGG | - | chr1_1:7557704-7557723 | None:intergenic | 30.0% | |
| GAATCGAAGAAGAGATTTAA+CGG | - | chr1_1:7557705-7557724 | None:intergenic | 30.0% | |
| TTAAATCTCTTCTTCGATTC+AGG | + | chr1_1:7557705-7557724 | Msa0005090:intron | 30.0% | |
| !! | ATGACGGATTCTCAATTAAA+TGG | - | chr1_1:7557925-7557944 | None:intergenic | 30.0% |
| TGTTGTCCAAATGATAGTAA+GGG | - | chr1_1:7557964-7557983 | None:intergenic | 30.0% | |
| TTGTTGTCCAAATGATAGTA+AGG | - | chr1_1:7557965-7557984 | None:intergenic | 30.0% | |
| CAATTCAACTGACACTTATA+AGG | + | chr1_1:7558195-7558214 | Msa0005090:intron | 30.0% | |
| TTTGTGAGAATTCTAAGTGT+GGG | + | chr1_1:7558260-7558279 | Msa0005090:intron | 30.0% | |
| TTCTATTGTTCCTCTTCATT+TGG | + | chr1_1:7558313-7558332 | Msa0005090:intron | 30.0% | |
| TTATGGCAGATGATGAAATT+CGG | + | chr1_1:7558605-7558624 | Msa0005090:intron | 30.0% | |
| AACCAGAAATTATATACGCT+GGG | + | chr1_1:7558868-7558887 | Msa0005090:intron | 30.0% | |
| TAAACTTTCAACGTAAACCT+TGG | - | chr1_1:7558900-7558919 | None:intergenic | 30.0% | |
| ! | ACGTATATTTTATATCGCTG+AGG | + | chr1_1:7559110-7559129 | Msa0005090:intron | 30.0% |
| ! | AATTCAGAAAAAAGTGCACT+TGG | - | chr1_1:7559261-7559280 | None:intergenic | 30.0% |
| TCACAAGGTAAGATCATATT+TGG | + | chr1_1:7559820-7559839 | Msa0005090:intron | 30.0% | |
| ! | TGAATGCAAGTTTTTCACAT+AGG | + | chr1_1:7559853-7559872 | Msa0005090:intron | 30.0% |
| ! | GAATGCAAGTTTTTCACATA+GGG | + | chr1_1:7559854-7559873 | Msa0005090:intron | 30.0% |
| ! | AAAAAGATTTTCTCCGTTTG+GGG | - | chr1_1:7559974-7559993 | None:intergenic | 30.0% |
| ! | GAAAAAGATTTTCTCCGTTT+GGG | - | chr1_1:7559975-7559994 | None:intergenic | 30.0% |
| ! | AGAAAAAGATTTTCTCCGTT+TGG | - | chr1_1:7559976-7559995 | None:intergenic | 30.0% |
| ! | AAACGGAGAAAATCTTTTTC+TGG | + | chr1_1:7559975-7559994 | Msa0005090:CDS | 30.0% |
| !!! | GTTCCTATATTTTTTAGCCA+TGG | + | chr1_1:7560010-7560029 | Msa0005090:intron | 30.0% |
| ATGCCATGGCTAAAAAATAT+AGG | - | chr1_1:7560016-7560035 | None:intergenic | 30.0% | |
| TAACATGAAGAAATATGCCA+TGG | - | chr1_1:7560030-7560049 | None:intergenic | 30.0% | |
| !!! | GTCTATTTTTTCATCCATTG+GGG | - | chr1_1:7560401-7560420 | None:intergenic | 30.0% |
| !!! | CAGTCTATTTTTTCATCCAT+TGG | - | chr1_1:7560403-7560422 | None:intergenic | 30.0% |
| CAACTGCAAAATTATCATCA+TGG | - | chr1_1:7560499-7560518 | None:intergenic | 30.0% | |
| GGTTAATTATGGCAAGTATA+AGG | + | chr1_1:7560638-7560657 | Msa0005090:intron | 30.0% | |
| TTATGGCAAGTATAAGGTTA+AGG | + | chr1_1:7560644-7560663 | Msa0005090:intron | 30.0% | |
| ! | CTGTGTTTAATTGTGTTGAT+TGG | + | chr1_1:7560804-7560823 | Msa0005090:intron | 30.0% |
| ! | TGTTTGATTTACTTGGTTTC+AGG | + | chr1_1:7561014-7561033 | Msa0005090:intron | 30.0% |
| GTAAAATCAGCAAAGAAGAT+TGG | + | chr1_1:7561230-7561249 | Msa0005090:CDS | 30.0% | |
| TGTATGTGAATTGTTCACTT+TGG | - | chr1_1:7561358-7561377 | None:intergenic | 30.0% | |
| ACAATTCACATACAAACTTG+TGG | + | chr1_1:7561364-7561383 | Msa0005090:intron | 30.0% | |
| TGACATGCCATAAATTGTTT+CGG | - | chr1_1:7561546-7561565 | None:intergenic | 30.0% | |
| TCAGTAGAAAAGCTCAAATA+AGG | + | chr1_1:7561614-7561633 | Msa0005090:intron | 30.0% | |
| TAATGAAGTGAGAAAACCAA+TGG | - | chr1_1:7561753-7561772 | None:intergenic | 30.0% | |
| !! | TTTATTTTCAAATCAGAGGC+TGG | + | chr1_1:7561876-7561895 | Msa0005090:CDS | 30.0% |
| !! | AATTTGCTGACAAACAATCA+TGG | + | chr1_1:7561980-7561999 | Msa0005090:three_prime_UTR | 30.0% |
| TACAAAACATGAAAACTTGG+TGG | - | chr1_1:7562053-7562072 | None:intergenic | 30.0% | |
| ! | TAGGCTACAAATATTTCTGT+TGG | - | chr1_1:7562099-7562118 | None:intergenic | 30.0% |
| GAACCAAAGCATAAAATCAT+TGG | - | chr1_1:7562158-7562177 | None:intergenic | 30.0% | |
| AAGAAGGGTTATGATGGTTA+TGG | - | chr1_1:7556438-7556457 | Msa0005080:intron | 35.0% | |
| GATGATAAGAAGGGTTATGA+TGG | - | chr1_1:7556444-7556463 | Msa0005080:intron | 35.0% | |
| ATCACCAATTTCGATCATAG+AGG | + | chr1_1:7556464-7556483 | Msa0005090:five_prime_UTR | 35.0% | |
| AGGTAGGTAAAAAGTTACAG+GGG | - | chr1_1:7556521-7556540 | Msa0005080:intron | 35.0% | |
| GTAGGTAGGTAAAAAGTTAC+AGG | - | chr1_1:7556523-7556542 | Msa0005080:intron | 35.0% | |
| !!! | TGCATGTTTTTTGATTCCAC+AGG | + | chr1_1:7556600-7556619 | Msa0005090:intron | 35.0% |
| AGGATGTATCTAGAGGAATA+GGG | + | chr1_1:7556620-7556639 | Msa0005090:intron | 35.0% | |
| TGGAAATCATTGAATGAAGG+GGG | - | chr1_1:7556822-7556841 | None:intergenic | 35.0% | |
| !! | TTGTATTGATTGAGCCAAAG+TGG | - | chr1_1:7556858-7556877 | None:intergenic | 35.0% |
| AAACACCTACAGCATATTGT+TGG | - | chr1_1:7556992-7557011 | None:intergenic | 35.0% | |
| ! | ACAAATCAAGGCCTTTAAAG+GGG | - | chr1_1:7557401-7557420 | None:intergenic | 35.0% |
| TAGGACAAGCTTACAAATCA+AGG | - | chr1_1:7557413-7557432 | None:intergenic | 35.0% | |
| GGAAATGAGGTTATATCATG+TGG | - | chr1_1:7557515-7557534 | None:intergenic | 35.0% | |
| TGGTTGAAACCTAAAGACAA+GGG | - | chr1_1:7557572-7557591 | None:intergenic | 35.0% | |
| ATCGAAGAAGAGATTTAACG+GGG | - | chr1_1:7557703-7557722 | None:intergenic | 35.0% | |
| ACTAAGGTGTAGTTTCACAA+AGG | - | chr1_1:7557771-7557790 | None:intergenic | 35.0% | |
| ATTCTCAATTAAATGGCGCA+TGG | - | chr1_1:7557918-7557937 | None:intergenic | 35.0% | |
| ! | ATAGCTGAAAGTTTCAAGTG+GGG | - | chr1_1:7558143-7558162 | None:intergenic | 35.0% |
| ! | GATAGCTGAAAGTTTCAAGT+GGG | - | chr1_1:7558144-7558163 | None:intergenic | 35.0% |
| TGATAGCTGAAAGTTTCAAG+TGG | - | chr1_1:7558145-7558164 | None:intergenic | 35.0% | |
| CTTGAAACTTTCAGCTATCA+TGG | + | chr1_1:7558145-7558164 | Msa0005090:intron | 35.0% | |
| ! | GGCAATTTCAACTTCAAGTT+TGG | + | chr1_1:7558166-7558185 | Msa0005090:intron | 35.0% |
| TTCAACTGACACTTATAAGG+TGG | + | chr1_1:7558198-7558217 | Msa0005090:intron | 35.0% | |
| GTTTGTGAGAATTCTAAGTG+TGG | + | chr1_1:7558259-7558278 | Msa0005090:intron | 35.0% | |
| TTCCTCTTCATTTGGACTTT+GGG | + | chr1_1:7558321-7558340 | Msa0005090:intron | 35.0% | |
| ! | TGGACTTTGGGGAATATTAT+TGG | + | chr1_1:7558333-7558352 | Msa0005090:intron | 35.0% |
| TGGGGAATATTATTGGAATG+CGG | + | chr1_1:7558340-7558359 | Msa0005090:intron | 35.0% | |
| TGTTATTGTTTCCCTTGATC+TGG | + | chr1_1:7558454-7558473 | Msa0005090:intron | 35.0% | |
| GTTATTGTTTCCCTTGATCT+GGG | + | chr1_1:7558455-7558474 | Msa0005090:intron | 35.0% | |
| TATGGCAGATGATGAAATTC+GGG | + | chr1_1:7558606-7558625 | Msa0005090:intron | 35.0% | |
| GAACCAGAAATTATATACGC+TGG | + | chr1_1:7558867-7558886 | Msa0005090:intron | 35.0% | |
| AACCCAGCGTATATAATTTC+TGG | - | chr1_1:7558873-7558892 | None:intergenic | 35.0% | |
| CTTGAGGATAAGGTTTCAAA+AGG | - | chr1_1:7558930-7558949 | None:intergenic | 35.0% | |
| !!! | CTTTTGAAACCTTATCCTCA+AGG | + | chr1_1:7558928-7558947 | Msa0005090:intron | 35.0% |
| ! | CCTTCTTTTATGAGTGATAG+TGG | - | chr1_1:7559155-7559174 | None:intergenic | 35.0% |
| CCACTATCACTCATAAAAGA+AGG | + | chr1_1:7559152-7559171 | Msa0005090:intron | 35.0% | |
| AATGAAAACTCAAGTCCACA+AGG | - | chr1_1:7559201-7559220 | None:intergenic | 35.0% | |
| ! | ATTTCGTTTTCCCCTTCTTT+TGG | + | chr1_1:7559278-7559297 | Msa0005090:intron | 35.0% |
| ! | TGCACAACTTTTGTATGACA+AGG | + | chr1_1:7559385-7559404 | Msa0005090:intron | 35.0% |
| ! | GCACAACTTTTGTATGACAA+GGG | + | chr1_1:7559386-7559405 | Msa0005090:intron | 35.0% |
| ! | CACAACTTTTGTATGACAAG+GGG | + | chr1_1:7559387-7559406 | Msa0005090:intron | 35.0% |
| ! | ACAACTTTTGTATGACAAGG+GGG | + | chr1_1:7559388-7559407 | Msa0005090:intron | 35.0% |
| ! | AGTAGCTCTGTAATTGATGA+TGG | + | chr1_1:7559791-7559810 | Msa0005090:CDS | 35.0% |
| !!! | CAAAACAGTTGCTGATTTTG+AGG | + | chr1_1:7560139-7560158 | Msa0005090:intron | 35.0% |
| ! | TTCAGTTGAAGACAGTCTTT+TGG | + | chr1_1:7560427-7560446 | Msa0005090:intron | 35.0% |
| ACATCAAATTTCGACAACAG+TGG | + | chr1_1:7560617-7560636 | Msa0005090:intron | 35.0% | |
| TCGACAACAGTGGTTAATTA+TGG | + | chr1_1:7560627-7560646 | Msa0005090:intron | 35.0% | |
| AGTTAATTACGTTCCGTGAT+TGG | - | chr1_1:7560868-7560887 | None:intergenic | 35.0% | |
| TTATAATGCCTAAAGCGATG+CGG | - | chr1_1:7560977-7560996 | None:intergenic | 35.0% | |
| TCTTGAAGCTATTGTTGACA+AGG | + | chr1_1:7561095-7561114 | Msa0005090:CDS | 35.0% | |
| ATCATTGTCTTGATCAACGT+CGG | - | chr1_1:7561209-7561228 | None:intergenic | 35.0% | |
| ! | GGTTTTCTCACTTCATTAAG+AGG | + | chr1_1:7561755-7561774 | Msa0005090:intron | 35.0% |
| AATAAAACTAGGAAACGCAG+TGG | - | chr1_1:7561862-7561881 | None:intergenic | 35.0% | |
| ! | GTCTATTTGAGGCAAATGAT+TGG | + | chr1_1:7561923-7561942 | Msa0005090:three_prime_UTR | 35.0% |
| ! | TTTGAGGCAAATGATTGGAT+TGG | + | chr1_1:7561928-7561947 | Msa0005090:three_prime_UTR | 35.0% |
| !! | GGATTGGTTATTGCTGTAAA+TGG | + | chr1_1:7561944-7561963 | Msa0005090:three_prime_UTR | 35.0% |
| GCTGTAAATGGTAACAACAT+TGG | + | chr1_1:7561956-7561975 | Msa0005090:three_prime_UTR | 35.0% | |
| CGGTCACTCTTTATGTATAA+TGG | - | chr1_1:7562180-7562199 | None:intergenic | 35.0% | |
| TTCACTTGAAGATATCACTG+CGG | - | chr1_1:7562200-7562219 | None:intergenic | 35.0% | |
| CTAGCCTCTATGATCGAAAT+TGG | - | chr1_1:7556471-7556490 | Msa0005080:intron | 40.0% | |
| AAAGTTACAGGGGAATGAGT+AGG | - | chr1_1:7556511-7556530 | Msa0005080:intron | 40.0% | |
| ATTCCACAGGATGTATCTAG+AGG | + | chr1_1:7556613-7556632 | Msa0005090:intron | 40.0% | |
| ATTCCTCTAGATACATCCTG+TGG | - | chr1_1:7556619-7556638 | None:intergenic | 40.0% | |
| CAGGATGTATCTAGAGGAAT+AGG | + | chr1_1:7556619-7556638 | Msa0005090:intron | 40.0% | |
| GGATGTATCTAGAGGAATAG+GGG | + | chr1_1:7556621-7556640 | Msa0005090:intron | 40.0% | |
| !! | GTTTTTGTCTTTGCTGTCAC+AGG | + | chr1_1:7556688-7556707 | Msa0005090:CDS | 40.0% |
| ! | TACATCTGGTTTCTTGAGCA+AGG | - | chr1_1:7556783-7556802 | None:intergenic | 40.0% |
| GGAAATCATTGAATGAAGGG+GGG | - | chr1_1:7556821-7556840 | None:intergenic | 40.0% | |
| ! | GTTTGAAGCCAGCTTTGATA+TGG | + | chr1_1:7557182-7557201 | Msa0005090:intron | 40.0% |
| ATATGGGATGGAAGCTGAAA+TGG | + | chr1_1:7557440-7557459 | Msa0005090:intron | 40.0% | |
| CAAATCTGTTGTGGGAAATG+AGG | - | chr1_1:7557528-7557547 | None:intergenic | 40.0% | |
| GTGGTTGAAACCTAAAGACA+AGG | - | chr1_1:7557573-7557592 | None:intergenic | 40.0% | |
| !! | TTTTCAATGCTGTGTCGTTG+TGG | - | chr1_1:7557592-7557611 | None:intergenic | 40.0% |
| ! | TTCGTGTTGCTGATCTACTA+AGG | - | chr1_1:7557787-7557806 | None:intergenic | 40.0% |
| ATTAAATGGCGCATGGAGTA+AGG | - | chr1_1:7557911-7557930 | None:intergenic | 40.0% | |
| TCGATGGAAAAGGAGAATGA+CGG | - | chr1_1:7557941-7557960 | None:intergenic | 40.0% | |
| ATAGTAAGGGTCGATGGAAA+AGG | - | chr1_1:7557951-7557970 | None:intergenic | 40.0% | |
| CAAATGATAGTAAGGGTCGA+TGG | - | chr1_1:7557957-7557976 | None:intergenic | 40.0% | |
| CATCGACCCTTACTATCATT+TGG | + | chr1_1:7557955-7557974 | Msa0005090:intron | 40.0% | |
| CAACAAAGATTGCTCTCGTA+TGG | + | chr1_1:7557979-7557998 | Msa0005090:intron | 40.0% | |
| AAAGATTGCTCTCGTATGGT+TGG | + | chr1_1:7557983-7558002 | Msa0005090:intron | 40.0% | |
| CCAGTACTCTCTATATGCAT+CGG | - | chr1_1:7558050-7558069 | None:intergenic | 40.0% | |
| !! | GAGAGTACTGGTTTCGTTTA+TGG | + | chr1_1:7558059-7558078 | Msa0005090:intron | 40.0% |
| AAATATCGCAGATGTTGTCC+TGG | - | chr1_1:7558095-7558114 | None:intergenic | 40.0% | |
| AGGACAACATCTGCGATATT+TGG | + | chr1_1:7558094-7558113 | Msa0005090:intron | 40.0% | |
| AACTGACACTTATAAGGTGG+TGG | + | chr1_1:7558201-7558220 | Msa0005090:intron | 40.0% | |
| TCTGTTGATGTGGATGGTAA+CGG | - | chr1_1:7558231-7558250 | None:intergenic | 40.0% | |
| ACAATGCTTCTCTGTTGATG+TGG | - | chr1_1:7558241-7558260 | None:intergenic | 40.0% | |
| ! | TAAGTGTGGGTGATAACGTT+TGG | + | chr1_1:7558273-7558292 | Msa0005090:intron | 40.0% |
| GTTCCTCTTCATTTGGACTT+TGG | + | chr1_1:7558320-7558339 | Msa0005090:intron | 40.0% | |
| TCCTCTTCATTTGGACTTTG+GGG | + | chr1_1:7558322-7558341 | Msa0005090:intron | 40.0% | |
| GGGGAATATTATTGGAATGC+GGG | + | chr1_1:7558341-7558360 | Msa0005090:intron | 40.0% | |
| ATTTGAGTGGCACACTTAAC+TGG | + | chr1_1:7558369-7558388 | Msa0005090:intron | 40.0% | |
| ATGGCAGATGATGAAATTCG+GGG | + | chr1_1:7558607-7558626 | Msa0005090:intron | 40.0% | |
| ! | GATGCAGTATCATTTTCCGT+TGG | + | chr1_1:7558706-7558725 | Msa0005090:intron | 40.0% |
| CTTATCCTCAAGGTTGAAGT+CGG | + | chr1_1:7558938-7558957 | Msa0005090:intron | 40.0% | |
| TTATCCTCAAGGTTGAAGTC+GGG | + | chr1_1:7558939-7558958 | Msa0005090:intron | 40.0% | |
| TCGAGCTTGAGGAAAAGAAA+AGG | + | chr1_1:7559031-7559050 | Msa0005090:intron | 40.0% | |
| !!! | TTTTCCCCTTCTTTTGGTTC+TGG | + | chr1_1:7559284-7559303 | Msa0005090:intron | 40.0% |
| !! | TGATGATGGCTTGATTCACA+AGG | + | chr1_1:7559805-7559824 | Msa0005090:CDS | 40.0% |
| GCACTATTTCAAACCCCAAA+CGG | + | chr1_1:7559958-7559977 | Msa0005090:CDS | 40.0% | |
| GAGGAACTAACATAGCGAAA+TGG | + | chr1_1:7560158-7560177 | Msa0005090:intron | 40.0% | |
| CATCACTGGAAGAATCACAA+TGG | - | chr1_1:7560250-7560269 | None:intergenic | 40.0% | |
| TAGTTCATTCATGGCATCAC+TGG | - | chr1_1:7560264-7560283 | None:intergenic | 40.0% | |
| ! | TTTTCATCCATTGGGGCATA+AGG | - | chr1_1:7560394-7560413 | None:intergenic | 40.0% |
| TCTATGACCTGAGACAAACA+GGG | + | chr1_1:7560528-7560547 | Msa0005090:CDS | 40.0% | |
| CAATAAACCCTGTTTGTCTC+AGG | - | chr1_1:7560538-7560557 | None:intergenic | 40.0% | |
| ! | TTGGTTTCAGGTGAAGCAAA+TGG | + | chr1_1:7561026-7561045 | Msa0005090:intron | 40.0% |
| ATTGTCTGCAGACAAAGTGA+AGG | - | chr1_1:7561184-7561203 | None:intergenic | 40.0% | |
| GACGTTGATCAAGACAATGA+TGG | + | chr1_1:7561208-7561227 | Msa0005090:CDS | 40.0% | |
| GTCATGTTCTTCAAGAGAGA+CGG | - | chr1_1:7561277-7561296 | None:intergenic | 40.0% | |
| ! | AAGCTATTCTGAAGAGTGTG+TGG | + | chr1_1:7561513-7561532 | Msa0005090:intron | 40.0% |
| TCAAATAAGGCAATGCAGAC+AGG | + | chr1_1:7561627-7561646 | Msa0005090:intron | 40.0% | |
| !! | TGTCACTTTGTCATCTTCCA+GGG | + | chr1_1:7561830-7561849 | Msa0005090:intron | 40.0% |
| TTCCTGCAATCATACCCTAA+GGG | + | chr1_1:7562020-7562039 | Msa0005090:three_prime_UTR | 40.0% | |
| ! | CATGAAAACTTGGTGGCTTT+AGG | - | chr1_1:7562046-7562065 | None:intergenic | 40.0% |
| CTAAAGACAAGCTTACTTGC+GGG | - | chr1_1:7562246-7562265 | None:intergenic | 40.0% | |
| CCTAAAGACAAGCTTACTTG+CGG | - | chr1_1:7562247-7562266 | None:intergenic | 40.0% | |
| CGCAAGTAAGCTTGTCTTTA+GGG | + | chr1_1:7562245-7562264 | Msa0005090:three_prime_UTR | 40.0% | |
| ACCTCAAAGACAGCTATGAG+TGG | - | chr1_1:7556670-7556689 | None:intergenic | 45.0% | |
| TGCTGGTGCAAATCTGTTGT+GGG | - | chr1_1:7557536-7557555 | None:intergenic | 45.0% | |
| TTGCTGGTGCAAATCTGTTG+TGG | - | chr1_1:7557537-7557556 | None:intergenic | 45.0% | |
| GAGTCATAGACGCAACTGAT+TGG | - | chr1_1:7557628-7557647 | None:intergenic | 45.0% | |
| TCAGGTGTGTCAGTAAGTCT+TGG | + | chr1_1:7557723-7557742 | Msa0005090:intron | 45.0% | |
| CAAAGGCTTGATCAGAGATG+AGG | - | chr1_1:7557754-7557773 | None:intergenic | 45.0% | |
| ATGACAGTGACGATGTACCT+GGG | + | chr1_1:7557867-7557886 | Msa0005090:intron | 45.0% | |
| ! | CGTATGGTTGGTACATGCAA+TGG | + | chr1_1:7557995-7558014 | Msa0005090:intron | 45.0% |
| ! | CCGATGCATATAGAGAGTAC+TGG | + | chr1_1:7558047-7558066 | Msa0005090:intron | 45.0% |
| GTTTATGGAACCTAGCAACC+AGG | + | chr1_1:7558074-7558093 | Msa0005090:intron | 45.0% | |
| CTGTTGATGTGGATGGTAAC+GGG | - | chr1_1:7558230-7558249 | None:intergenic | 45.0% | |
| TGCTTCTCTGTTGATGTGGA+TGG | - | chr1_1:7558237-7558256 | None:intergenic | 45.0% | |
| TCCCCAAAGTCCAAATGAAG+AGG | - | chr1_1:7558326-7558345 | None:intergenic | 45.0% | |
| AATGCGGGTGTGTATTTGAG+TGG | + | chr1_1:7558356-7558375 | Msa0005090:intron | 45.0% | |
| TGTCTCTGTACCCAGATCAA+GGG | - | chr1_1:7558468-7558487 | None:intergenic | 45.0% | |
| ATGTCTCTGTACCCAGATCA+AGG | - | chr1_1:7558469-7558488 | None:intergenic | 45.0% | |
| !! | ACACCAACTGTTGGTTCAGT+AGG | - | chr1_1:7558533-7558552 | None:intergenic | 45.0% |
| ! | TGAACCAACAGTTGGTGTGT+TGG | + | chr1_1:7558535-7558554 | Msa0005090:intron | 45.0% |
| ! | GAACCAACAGTTGGTGTGTT+GGG | + | chr1_1:7558536-7558555 | Msa0005090:intron | 45.0% |
| ! | AACCAACAGTTGGTGTGTTG+GGG | + | chr1_1:7558537-7558556 | Msa0005090:intron | 45.0% |
| CCATCCTCAGAAAGAAGCAA+CGG | - | chr1_1:7558734-7558753 | None:intergenic | 45.0% | |
| TATACGCTGGGTTTCAACCA+AGG | + | chr1_1:7558880-7558899 | Msa0005090:intron | 45.0% | |
| CGACTTCAACCTTGAGGATA+AGG | - | chr1_1:7558940-7558959 | None:intergenic | 45.0% | |
| !! | AACAGTTGGTGAGGCAACTT+TGG | - | chr1_1:7558994-7559013 | None:intergenic | 45.0% |
| ! | ACAAGACAGAACAGTTGGTG+AGG | - | chr1_1:7559003-7559022 | None:intergenic | 45.0% |
| CAGTGACAAGACAGAACAGT+TGG | - | chr1_1:7559008-7559027 | None:intergenic | 45.0% | |
| TGTCACTGTATTCGAGCTTG+AGG | + | chr1_1:7559020-7559039 | Msa0005090:intron | 45.0% | |
| CTCTGATGTACACAACCTTG+TGG | + | chr1_1:7559183-7559202 | Msa0005090:intron | 45.0% | |
| GTGACCAGAACCAAAAGAAG+GGG | - | chr1_1:7559291-7559310 | None:intergenic | 45.0% | |
| GGTGACCAGAACCAAAAGAA+GGG | - | chr1_1:7559292-7559311 | None:intergenic | 45.0% | |
| TGGTGACCAGAACCAAAAGA+AGG | - | chr1_1:7559293-7559312 | None:intergenic | 45.0% | |
| TTTCCATCCTTATGCCCCAA+TGG | + | chr1_1:7560384-7560403 | Msa0005090:CDS | 45.0% | |
| CTCTATGACCTGAGACAAAC+AGG | + | chr1_1:7560527-7560546 | Msa0005090:CDS | 45.0% | |
| AACAGGGTTTATTGAGCCAG+AGG | + | chr1_1:7560544-7560563 | Msa0005090:CDS | 45.0% | |
| ACTACTGAACTCACTTCCTC+TGG | - | chr1_1:7560563-7560582 | None:intergenic | 45.0% | |
| !! | GTGTCACTTTGTCATCTTCC+AGG | + | chr1_1:7561829-7561848 | Msa0005090:intron | 45.0% |
| GTTCCTGCAATCATACCCTA+AGG | + | chr1_1:7562019-7562038 | Msa0005090:three_prime_UTR | 45.0% | |
| CCGCAAGTAAGCTTGTCTTT+AGG | + | chr1_1:7562244-7562263 | Msa0005090:three_prime_UTR | 45.0% | |
| TACAGGGGAATGAGTAGGCA+TGG | - | chr1_1:7556506-7556525 | Msa0005080:intron | 50.0% | |
| GCCACTCATAGCTGTCTTTG+AGG | + | chr1_1:7556666-7556685 | Msa0005090:CDS | 50.0% | |
| TGCGTCTATGACTCTATCGC+CGG | + | chr1_1:7557634-7557653 | Msa0005090:intron | 50.0% | |
| ATATCGTCAGAGAGGACCAC+CGG | - | chr1_1:7557656-7557675 | None:intergenic | 50.0% | |
| CAGCGATGATATCGTCAGAG+AGG | - | chr1_1:7557664-7557683 | None:intergenic | 50.0% | |
| CTCTGACGATATCATCGCTG+AGG | + | chr1_1:7557664-7557683 | Msa0005090:intron | 50.0% | |
| CACATCACAGATCTCACACC+AGG | + | chr1_1:7557833-7557852 | Msa0005090:intron | 50.0% | |
| GATGACAGTGACGATGTACC+TGG | + | chr1_1:7557866-7557885 | Msa0005090:intron | 50.0% | |
| TGACAGTGACGATGTACCTG+GGG | + | chr1_1:7557868-7557887 | Msa0005090:intron | 50.0% | |
| CAGATGTTGTCCTGGTTGCT+AGG | - | chr1_1:7558087-7558106 | None:intergenic | 50.0% | |
| ! | AATCAGTACTTGCTGCCTCG+TGG | + | chr1_1:7558491-7558510 | Msa0005090:intron | 50.0% |
| GGAACTTCCTCAAAACCACG+AGG | - | chr1_1:7558509-7558528 | None:intergenic | 50.0% | |
| !! | CCAACTGTTGGTTCAGTAGG+TGG | - | chr1_1:7558530-7558549 | None:intergenic | 50.0% |
| CCACCTACTGAACCAACAGT+TGG | + | chr1_1:7558527-7558546 | Msa0005090:intron | 50.0% | |
| ! | ACCAACAGTTGGTGTGTTGG+GGG | + | chr1_1:7558538-7558557 | Msa0005090:intron | 50.0% |
| GCAGATGATGAAATTCGGGG+TGG | + | chr1_1:7558610-7558629 | Msa0005090:intron | 50.0% | |
| AATTCGGGGTGGAAGAGTCT+TGG | + | chr1_1:7558621-7558640 | Msa0005090:intron | 50.0% | |
| GAAAGAAGCAACGGCACCAA+CGG | - | chr1_1:7558725-7558744 | None:intergenic | 50.0% | |
| ! | CCGTTGCTTCTTTCTGAGGA+TGG | + | chr1_1:7558731-7558750 | Msa0005090:intron | 50.0% |
| GTTTCCCGACTTCAACCTTG+AGG | - | chr1_1:7558946-7558965 | None:intergenic | 50.0% | |
| GTCGGGAAACTGCTACTGAA+TGG | + | chr1_1:7558956-7558975 | Msa0005090:intron | 50.0% | |
| ! | TGAGGCAACTTTGGAGGACA+AGG | - | chr1_1:7558985-7559004 | None:intergenic | 50.0% |
| !! | AGTTGGTGAGGCAACTTTGG+AGG | - | chr1_1:7558991-7559010 | None:intergenic | 50.0% |
| CATCCATTGGGGCATAAGGA+TGG | - | chr1_1:7560390-7560409 | None:intergenic | 50.0% | |
| CACATAAGCCGCATCGCTTT+AGG | + | chr1_1:7560966-7560985 | Msa0005090:intron | 50.0% | |
| AAACGCAGTGGTGATATCCC+TGG | - | chr1_1:7561850-7561869 | None:intergenic | 50.0% | |
| !! | TTGGTGGCTTTAGGCCCTTA+GGG | - | chr1_1:7562037-7562056 | None:intergenic | 50.0% |
| GTCTATGACTCTATCGCCGG+TGG | + | chr1_1:7557637-7557656 | Msa0005090:intron | 55.0% | |
| ACGACACTGTAATCCACCCC+AGG | - | chr1_1:7557887-7557906 | None:intergenic | 55.0% | |
| !! | CTTGCTGCCTCGTGGTTTTG+AGG | + | chr1_1:7558499-7558518 | Msa0005090:intron | 55.0% |
| ! | CCAACAGTTGGTGTGTTGGG+GGG | + | chr1_1:7558539-7558558 | Msa0005090:intron | 55.0% |
| !! | GGTGCCGTTGCTTCTTTCTG+AGG | + | chr1_1:7558727-7558746 | Msa0005090:intron | 55.0% |
| TCGCTGAGGATGCATCAGCT+TGG | + | chr1_1:7559124-7559143 | Msa0005090:intron | 55.0% | |
| CGCTGAGGATGCATCAGCTT+GGG | + | chr1_1:7559125-7559144 | Msa0005090:intron | 55.0% | |
| GCTGAGGATGCATCAGCTTG+GGG | + | chr1_1:7559126-7559145 | Msa0005090:intron | 55.0% | |
| GATGGAAAACACTGAGCGCG+TGG | - | chr1_1:7560372-7560391 | None:intergenic | 55.0% | |
| GGCCCTTAGGGTATGATTGC+AGG | - | chr1_1:7562025-7562044 | None:intergenic | 55.0% | |
| !! | CTTGGTGGCTTTAGGCCCTT+AGG | - | chr1_1:7562038-7562057 | None:intergenic | 55.0% |
| TCTCACACCAGGCGACTCGT+CGG | + | chr1_1:7557844-7557863 | Msa0005090:intron | 60.0% | |
| CAGTGACGATGTACCTGGGG+TGG | + | chr1_1:7557871-7557890 | Msa0005090:intron | 60.0% | |
| CCCCCCAACACACCAACTGT+TGG | - | chr1_1:7558542-7558561 | None:intergenic | 60.0% | |
| CTGTCATCCGACGAGTCGCC+TGG | - | chr1_1:7557854-7557873 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 7556342 | 7562387 | 7556342 | ID=Msa0005090;Name=Msa0005090 |
| chr1_1 | mRNA | 7556342 | 7562387 | 7556342 | ID=Msa0005090-mRNA-1;Parent=Msa0005090;Name=Msa0005090-mRNA-1;_AED=0.12;_eAED=0.12;_QI=163|0.77|0.9|1|0.88|0.9|10|482|268 |
| chr1_1 | exon | 7556342 | 7556522 | 7556342 | ID=Msa0005090-mRNA-1:exon:2664;Parent=Msa0005090-mRNA-1 |
| chr1_1 | exon | 7556622 | 7556799 | 7556622 | ID=Msa0005090-mRNA-1:exon:2665;Parent=Msa0005090-mRNA-1 |
| chr1_1 | exon | 7556978 | 7557034 | 7556978 | ID=Msa0005090-mRNA-1:exon:2666;Parent=Msa0005090-mRNA-1 |
| chr1_1 | exon | 7559744 | 7559826 | 7559744 | ID=Msa0005090-mRNA-1:exon:2667;Parent=Msa0005090-mRNA-1 |
| chr1_1 | exon | 7559943 | 7560002 | 7559943 | ID=Msa0005090-mRNA-1:exon:2668;Parent=Msa0005090-mRNA-1 |
| chr1_1 | exon | 7560313 | 7560421 | 7560313 | ID=Msa0005090-mRNA-1:exon:2669;Parent=Msa0005090-mRNA-1 |
| chr1_1 | exon | 7560516 | 7560568 | 7560516 | ID=Msa0005090-mRNA-1:exon:2670;Parent=Msa0005090-mRNA-1 |
| chr1_1 | exon | 7561036 | 7561116 | 7561036 | ID=Msa0005090-mRNA-1:exon:2671;Parent=Msa0005090-mRNA-1 |
| chr1_1 | exon | 7561199 | 7561311 | 7561199 | ID=Msa0005090-mRNA-1:exon:2672;Parent=Msa0005090-mRNA-1 |
| chr1_1 | exon | 7561851 | 7562387 | 7561851 | ID=Msa0005090-mRNA-1:exon:2673;Parent=Msa0005090-mRNA-1 |
| chr1_1 | five_prime_UTR | 7556342 | 7556504 | 7556342 | ID=Msa0005090-mRNA-1:five_prime_utr;Parent=Msa0005090-mRNA-1 |
| chr1_1 | CDS | 7556505 | 7556522 | 7556505 | ID=Msa0005090-mRNA-1:cds;Parent=Msa0005090-mRNA-1 |
| chr1_1 | CDS | 7556622 | 7556799 | 7556622 | ID=Msa0005090-mRNA-1:cds;Parent=Msa0005090-mRNA-1 |
| chr1_1 | CDS | 7556978 | 7557034 | 7556978 | ID=Msa0005090-mRNA-1:cds;Parent=Msa0005090-mRNA-1 |
| chr1_1 | CDS | 7559744 | 7559826 | 7559744 | ID=Msa0005090-mRNA-1:cds;Parent=Msa0005090-mRNA-1 |
| chr1_1 | CDS | 7559943 | 7560002 | 7559943 | ID=Msa0005090-mRNA-1:cds;Parent=Msa0005090-mRNA-1 |
| chr1_1 | CDS | 7560313 | 7560421 | 7560313 | ID=Msa0005090-mRNA-1:cds;Parent=Msa0005090-mRNA-1 |
| chr1_1 | CDS | 7560516 | 7560568 | 7560516 | ID=Msa0005090-mRNA-1:cds;Parent=Msa0005090-mRNA-1 |
| chr1_1 | CDS | 7561036 | 7561116 | 7561036 | ID=Msa0005090-mRNA-1:cds;Parent=Msa0005090-mRNA-1 |
| chr1_1 | CDS | 7561199 | 7561311 | 7561199 | ID=Msa0005090-mRNA-1:cds;Parent=Msa0005090-mRNA-1 |
| chr1_1 | CDS | 7561851 | 7561905 | 7561851 | ID=Msa0005090-mRNA-1:cds;Parent=Msa0005090-mRNA-1 |
| chr1_1 | three_prime_UTR | 7561906 | 7562387 | 7561906 | ID=Msa0005090-mRNA-1:three_prime_utr;Parent=Msa0005090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
