Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0053150 | XP_003589021.1 | 92.883 | 281 | 7 | 1 | 1 | 268 | 1 | 281 | 0.0 | 523 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0053150 | sp|Q7FRS8|CNBLA_ARATH | 60.311 | 257 | 79 | 2 | 9 | 265 | 20 | 253 | 2.33e-103 | 304 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0053150 | G7IB88 | 92.883 | 281 | 7 | 1 | 1 | 268 | 1 | 281 | 0.0 | 523 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005090 | Msa0053150 | 0.919090 | 6.947677e-87 | -8.615850e-47 |
| Msa0053150 | Msa0098610 | 0.936410 | 1.815045e-97 | -8.615850e-47 |
| Msa0053150 | Msa0098640 | 0.838705 | 2.453425e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0053150 | MtrunA17_Chr1g0151621 | 90.299 | 268 | 7 | 1 | 1 | 268 | 1 | 249 | 2.15e-175 | 483 |
| Msa0053150 | MtrunA17_Chr8g0341941 | 54.475 | 257 | 94 | 3 | 12 | 264 | 14 | 251 | 1.92e-86 | 258 |
| Msa0053150 | MtrunA17_Chr4g0076551 | 66.667 | 180 | 60 | 0 | 86 | 265 | 44 | 223 | 2.61e-84 | 251 |
| Msa0053150 | MtrunA17_Chr5g0446931 | 66.667 | 180 | 60 | 0 | 86 | 265 | 43 | 222 | 3.21e-84 | 251 |
| Msa0053150 | MtrunA17_Chr3g0102821 | 66.667 | 180 | 60 | 0 | 86 | 265 | 43 | 222 | 3.66e-84 | 251 |
| Msa0053150 | MtrunA17_Chr4g0055421 | 54.585 | 229 | 80 | 2 | 36 | 264 | 2 | 206 | 6.11e-79 | 237 |
| Msa0053150 | MtrunA17_Chr2g0290771 | 61.326 | 181 | 70 | 0 | 85 | 265 | 7 | 187 | 2.03e-78 | 235 |
| Msa0053150 | MtrunA17_Chr8g0388331 | 61.111 | 180 | 70 | 0 | 86 | 265 | 28 | 207 | 1.11e-76 | 231 |
| Msa0053150 | MtrunA17_Chr8g0346911 | 58.011 | 181 | 76 | 0 | 86 | 266 | 51 | 231 | 2.72e-72 | 221 |
| Msa0053150 | MtrunA17_Chr2g0290751 | 60.000 | 165 | 66 | 0 | 86 | 250 | 46 | 210 | 4.34e-68 | 209 |
| Msa0053150 | MtrunA17_Chr2g0290781 | 55.556 | 180 | 80 | 0 | 86 | 265 | 48 | 227 | 2.69e-67 | 209 |
| Msa0053150 | MtrunA17_Chr2g0290761 | 59.394 | 165 | 67 | 0 | 86 | 250 | 46 | 210 | 1.16e-66 | 206 |
| Msa0053150 | MtrunA17_Chr4g0063121 | 44.068 | 177 | 79 | 1 | 88 | 264 | 7 | 163 | 1.52e-46 | 155 |
| Msa0053150 | MtrunA17_Chr3g0126801 | 66.667 | 96 | 32 | 0 | 170 | 265 | 6 | 101 | 2.08e-42 | 141 |
| Msa0053150 | MtrunA17_Chr3g0126811 | 67.073 | 82 | 27 | 0 | 86 | 167 | 29 | 110 | 4.04e-32 | 114 |
| Msa0053150 | MtrunA17_Chr5g0399921 | 59.770 | 87 | 35 | 0 | 87 | 173 | 28 | 114 | 3.46e-27 | 102 |
| Msa0053150 | MtrunA17_Chr8g0388321 | 43.697 | 119 | 42 | 2 | 78 | 187 | 62 | 164 | 8.02e-22 | 89.4 |
| Msa0053150 | MtrunA17_Chr8g0388311 | 49.296 | 71 | 36 | 0 | 190 | 260 | 1 | 71 | 1.57e-20 | 83.6 |
| Msa0053150 | MtrunA17_Chr5g0399931 | 55.556 | 72 | 32 | 0 | 190 | 261 | 1 | 72 | 9.06e-20 | 81.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0053150 | AT4G33000.2 | 59.770 | 261 | 82 | 2 | 5 | 265 | 6 | 243 | 1.05e-104 | 304 |
| Msa0053150 | AT4G33000.1 | 60.311 | 257 | 79 | 2 | 9 | 265 | 20 | 253 | 2.37e-104 | 304 |
| Msa0053150 | AT5G24270.5 | 68.927 | 177 | 55 | 0 | 85 | 261 | 6 | 182 | 6.71e-86 | 254 |
| Msa0053150 | AT5G24270.4 | 67.778 | 180 | 58 | 0 | 86 | 265 | 32 | 211 | 1.09e-84 | 253 |
| Msa0053150 | AT5G24270.1 | 67.778 | 180 | 58 | 0 | 86 | 265 | 32 | 211 | 1.09e-84 | 253 |
| Msa0053150 | AT5G24270.2 | 67.778 | 180 | 58 | 0 | 86 | 265 | 32 | 211 | 1.09e-84 | 253 |
| Msa0053150 | AT4G26570.1 | 66.111 | 180 | 61 | 0 | 86 | 265 | 43 | 222 | 6.70e-84 | 251 |
| Msa0053150 | AT4G26570.2 | 64.674 | 184 | 61 | 1 | 86 | 265 | 43 | 226 | 9.08e-82 | 245 |
| Msa0053150 | AT5G55990.1 | 65.556 | 180 | 62 | 0 | 86 | 265 | 43 | 222 | 1.23e-81 | 245 |
| Msa0053150 | AT5G55990.2 | 65.556 | 180 | 62 | 0 | 86 | 265 | 43 | 222 | 1.23e-81 | 245 |
| Msa0053150 | AT5G47100.1 | 64.444 | 180 | 64 | 0 | 86 | 265 | 28 | 207 | 5.05e-79 | 238 |
| Msa0053150 | AT1G64480.2 | 61.667 | 180 | 69 | 0 | 86 | 265 | 32 | 211 | 1.11e-77 | 234 |
| Msa0053150 | AT1G64480.3 | 61.667 | 180 | 69 | 0 | 86 | 265 | 32 | 211 | 1.11e-77 | 234 |
| Msa0053150 | AT1G64480.1 | 61.667 | 180 | 69 | 0 | 86 | 265 | 32 | 211 | 1.11e-77 | 234 |
| Msa0053150 | AT4G17615.4 | 53.478 | 230 | 83 | 2 | 36 | 265 | 2 | 207 | 3.67e-77 | 233 |
| Msa0053150 | AT4G17615.1 | 53.478 | 230 | 83 | 2 | 36 | 265 | 2 | 207 | 3.67e-77 | 233 |
| Msa0053150 | AT4G17615.5 | 53.478 | 230 | 83 | 2 | 36 | 265 | 2 | 207 | 3.67e-77 | 233 |
| Msa0053150 | AT4G33000.5 | 56.132 | 212 | 70 | 2 | 5 | 216 | 6 | 194 | 6.06e-74 | 225 |
| Msa0053150 | AT4G33000.4 | 56.667 | 210 | 68 | 2 | 5 | 214 | 6 | 192 | 8.21e-74 | 224 |
| Msa0053150 | AT4G33000.6 | 56.667 | 210 | 68 | 2 | 5 | 214 | 6 | 192 | 8.21e-74 | 224 |
| Msa0053150 | AT1G64480.4 | 62.048 | 166 | 63 | 0 | 86 | 251 | 32 | 197 | 3.63e-71 | 217 |
| Msa0053150 | AT4G17615.3 | 51.351 | 222 | 84 | 2 | 36 | 257 | 2 | 199 | 6.99e-69 | 213 |
| Msa0053150 | AT5G24270.3 | 64.286 | 154 | 55 | 0 | 108 | 261 | 7 | 160 | 3.40e-68 | 209 |
| Msa0053150 | AT4G16350.2 | 53.631 | 179 | 79 | 1 | 86 | 264 | 41 | 215 | 1.12e-63 | 199 |
| Msa0053150 | AT4G16350.1 | 53.631 | 179 | 79 | 1 | 86 | 264 | 41 | 215 | 1.12e-63 | 199 |
| Msa0053150 | AT4G17615.2 | 60.131 | 153 | 61 | 0 | 114 | 266 | 14 | 166 | 2.32e-62 | 194 |
| Msa0053150 | AT4G26560.1 | 48.936 | 188 | 83 | 2 | 91 | 265 | 23 | 210 | 5.87e-58 | 184 |
| Msa0053150 | AT4G01420.1 | 47.399 | 173 | 91 | 0 | 89 | 261 | 30 | 202 | 2.38e-52 | 169 |
| Msa0053150 | AT5G47100.2 | 63.281 | 128 | 47 | 0 | 86 | 213 | 28 | 155 | 1.30e-51 | 167 |
| Msa0053150 | AT4G01420.2 | 47.239 | 163 | 86 | 0 | 89 | 251 | 30 | 192 | 2.53e-48 | 159 |
| Msa0053150 | AT4G33000.3 | 51.829 | 164 | 56 | 2 | 5 | 168 | 6 | 146 | 5.09e-48 | 157 |
Find 63 sgRNAs with CRISPR-Local
Find 342 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTAGATTATGTTTCTGTTTA+TGG | 0.079012 | 1_2:-7569438 | Msa0053140:intron |
| CGCAAGTAAGCTTGTCTTTA+GGG | 0.199731 | 1_2:+7575348 | Msa0053150:three_prime_UTR |
| CATGAAAACTTGGTGGCTTT+AGG | 0.228877 | 1_2:-7575150 | None:intergenic |
| TAATCAAACCTATGAATTAT+AGG | 0.236206 | 1_2:-7575222 | None:intergenic |
| CTAGCCTCTATGATCGAAAT+TGG | 0.270825 | 1_2:-7569559 | Msa0053140:intron |
| ATGAAAACTTGGTGGCTTTA+GGG | 0.270974 | 1_2:-7575149 | None:intergenic |
| GGATTGGTTATTGCTGTAAA+TGG | 0.273428 | 1_2:+7575059 | Msa0053150:three_prime_UTR |
| CGGTCACTCTTTATGTATAA+TGG | 0.295450 | 1_2:-7575284 | None:intergenic |
| CCGCAAGTAAGCTTGTCTTT+AGG | 0.302808 | 1_2:+7575347 | Msa0053150:three_prime_UTR |
| CAGGATGTATCTAGAGGAAT+AGG | 0.310364 | 1_2:+7569710 | Msa0053150:intron |
| CTCTATGACCTGAGACAAAC+AGG | 0.330842 | 1_2:+7573647 | Msa0053150:CDS |
| TGGCTTTAGGGTATGATTGC+AGG | 0.351457 | 1_2:-7575137 | None:intergenic |
| GCCACTCATAGCTGTCTTTG+AGG | 0.377672 | 1_2:+7569757 | Msa0053150:CDS |
| ATTTGTAGCCTATAATTCAT+AGG | 0.385610 | 1_2:+7575214 | Msa0053150:three_prime_UTR |
| GTCTATTTGAGGCAAATGAT+TGG | 0.407101 | 1_2:+7575038 | Msa0053150:three_prime_UTR |
| AAGAAGGGTTATGATGGTTA+TGG | 0.412803 | 1_2:-7569526 | Msa0053140:intron |
| CTAAAGACAAGCTTACTTGC+GGG | 0.423799 | 1_2:-7575346 | None:intergenic |
| AGGATGTATCTAGAGGAATA+GGG | 0.424974 | 1_2:+7569711 | Msa0053150:intron |
| GAACCAAAGCATAAAATCAT+TGG | 0.439256 | 1_2:-7575262 | None:intergenic |
| GTAAAATCAGCAAAGAAGAT+TGG | 0.453764 | 1_2:+7574345 | Msa0053150:CDS |
| CAATAAACCCTGTTTGTCTC+AGG | 0.457501 | 1_2:-7573655 | None:intergenic |
| TTGGTTTCAGGTGAAGCAAA+TGG | 0.479980 | 1_2:+7574148 | Msa0053150:intron |
| TTGTTATTTGATAATGATGA+TGG | 0.481087 | 1_2:+7570104 | Msa0053150:CDS |
| AAACACCTACAGCATATTGT+TGG | 0.483900 | 1_2:-7570080 | None:intergenic |
| TAGGCTACAAATATTTCTGT+TGG | 0.488335 | 1_2:-7575203 | None:intergenic |
| ACATACAAAACATGAAAACT+TGG | 0.489189 | 1_2:-7575160 | None:intergenic |
| AATTGGTGATGATGATAAGA+AGG | 0.490633 | 1_2:-7569542 | Msa0053140:intron |
| TTTGAGGCAAATGATTGGAT+TGG | 0.494507 | 1_2:+7575043 | Msa0053150:three_prime_UTR |
| TTTCACTAAAATTAAAGTGT+GGG | 0.502088 | 1_2:+7575447 | Msa0053150:three_prime_UTR |
| CATCCATTGGGGCATAAGGA+TGG | 0.505415 | 1_2:-7573507 | None:intergenic |
| TACATCTGGTTTCTTGAGCA+AGG | 0.512152 | 1_2:-7569871 | None:intergenic |
| TTTCCATCCTTATGCCCCAA+TGG | 0.516605 | 1_2:+7573504 | Msa0053150:CDS |
| GCACTATTTCAAACCCCAAA+CGG | 0.519503 | 1_2:+7573078 | Msa0053150:CDS |
| AGTAGCTCTGTAATTGATGA+TGG | 0.519726 | 1_2:+7572911 | Msa0053150:CDS |
| ATTTCACTAAAATTAAAGTG+TGG | 0.529768 | 1_2:+7575446 | Msa0053150:three_prime_UTR |
| TACAAAACATGAAAACTTGG+TGG | 0.533813 | 1_2:-7575157 | None:intergenic |
| GTCATGTTCTTCAAGAGAGA+CGG | 0.538874 | 1_2:-7574389 | None:intergenic |
| ACTACTGAACTCACTTCCTC+TGG | 0.539821 | 1_2:-7573680 | None:intergenic |
| TAAATAAAGTTAAATACACT+TGG | 0.562418 | 1_2:-7575374 | None:intergenic |
| TCTTGAAGCTATTGTTGACA+AGG | 0.562525 | 1_2:+7574217 | Msa0053150:CDS |
| GCTGTAAATGGTAACAACAT+TGG | 0.565233 | 1_2:+7575071 | Msa0053150:three_prime_UTR |
| GATGATAAGAAGGGTTATGA+TGG | 0.576539 | 1_2:-7569532 | Msa0053140:intron |
| ATTGGTGATGATGATAAGAA+GGG | 0.577485 | 1_2:-7569541 | Msa0053140:intron |
| TACAGGGGAATGAGTAGGCA+TGG | 0.577752 | 1_2:-7569594 | Msa0053140:intron |
| TCTGATTTGAAAATAAAACT+AGG | 0.584623 | 1_2:-7574985 | None:intergenic |
| AATTTGCTGACAAACAATCA+TGG | 0.588998 | 1_2:+7575095 | Msa0053150:three_prime_UTR |
| AAAGTTACAGGGGAATGAGT+AGG | 0.590893 | 1_2:-7569599 | Msa0053140:intron |
| ATCACCAATTTCGATCATAG+AGG | 0.600338 | 1_2:+7569555 | Msa0053150:five_prime_UTR |
| GGATGTATCTAGAGGAATAG+GGG | 0.600419 | 1_2:+7569712 | Msa0053150:intron |
| TATATCCAACAATATGCTGT+AGG | 0.601683 | 1_2:+7570075 | Msa0053150:CDS |
| ATTCCACAGGATGTATCTAG+AGG | 0.601973 | 1_2:+7569704 | Msa0053150:intron |
| AAACATAATCTACATAGGAA+AGG | 0.604565 | 1_2:+7569448 | Msa0053150:five_prime_UTR |
| AACAGAAACATAATCTACAT+AGG | 0.605114 | 1_2:+7569443 | Msa0053150:five_prime_UTR |
| GATGGAAAACACTGAGCGCG+TGG | 0.605651 | 1_2:-7573489 | None:intergenic |
| GACGTTGATCAAGACAATGA+TGG | 0.607782 | 1_2:+7574323 | Msa0053150:CDS |
| AACAGGGTTTATTGAGCCAG+AGG | 0.608476 | 1_2:+7573664 | Msa0053150:CDS |
| CCTAAAGACAAGCTTACTTG+CGG | 0.624067 | 1_2:-7575347 | None:intergenic |
| ATCATTGTCTTGATCAACGT+CGG | 0.634735 | 1_2:-7574321 | None:intergenic |
| TGATGATGGCTTGATTCACA+AGG | 0.635403 | 1_2:+7572925 | Msa0053150:CDS |
| ACCTCAAAGACAGCTATGAG+TGG | 0.672289 | 1_2:-7569758 | None:intergenic |
| AATAAAACTAGGAAACGCAG+TGG | 0.710414 | 1_2:-7574974 | None:intergenic |
| TCTATGACCTGAGACAAACA+GGG | 0.757678 | 1_2:+7573648 | Msa0053150:CDS |
| ATCACTTGAAGATGTCACTG+CGG | 0.771390 | 1_2:-7575304 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGAAAATGTAATAGAAA+TGG | - | chr1_2:7572537-7572556 | None:intergenic | 15.0% |
| !!! | ATTTTTTTTCTTTCAATTGT+AGG | + | chr1_2:7573041-7573060 | Msa0053150:intron | 15.0% |
| !!! | ATTTTTGATGAAAAAAGAAA+CGG | + | chr1_2:7573442-7573461 | Msa0053150:CDS | 15.0% |
| !!! | TAAAATTTTAAAGACTTTAG+AGG | - | chr1_2:7574917-7574936 | None:intergenic | 15.0% |
| !! | TAAATAAAGTTAAATACACT+TGG | - | chr1_2:7575377-7575396 | None:intergenic | 15.0% |
| !! | AATGAATTAGAAAAATGAGT+AGG | - | chr1_2:7569632-7569651 | None:intergenic | 20.0% |
| !! | AAAGTGGAAAATAATTGAAA+TGG | - | chr1_2:7569933-7569952 | None:intergenic | 20.0% |
| !!! | ATTTCAATTATTTTCCACTT+TGG | + | chr1_2:7569932-7569951 | Msa0053150:intron | 20.0% |
| !!! | TTGTTATTTGATAATGATGA+TGG | + | chr1_2:7570104-7570123 | Msa0053150:CDS | 20.0% |
| !! | AACAATAACAAATTGTTCAA+CGG | - | chr1_2:7571534-7571553 | None:intergenic | 20.0% |
| !! | TGTAAGAATAAGAAAAACAA+AGG | - | chr1_2:7571658-7571677 | None:intergenic | 20.0% |
| !!! | AGAAAACTGATTTTGTTTTA+TGG | + | chr1_2:7571678-7571697 | Msa0053150:intron | 20.0% |
| !!! | AGAAAACTGATTTTGTTTTA+TGG | + | chr1_2:7571678-7571697 | Msa0053150:intron | 20.0% |
| !!! | ATAATTTCTGGTTCTATTAT+CGG | - | chr1_2:7571981-7572000 | None:intergenic | 20.0% |
| !!! | TCTATTACATTTTCAAAACT+AGG | + | chr1_2:7572539-7572558 | Msa0053150:intron | 20.0% |
| !!! | TTAAGTTTGTTAGTTTAGTT+AGG | - | chr1_2:7572685-7572704 | None:intergenic | 20.0% |
| !! | TATCATTAGAGATATATTGT+TGG | - | chr1_2:7572757-7572776 | None:intergenic | 20.0% |
| !! | TACAATTTCATCTACAATAT+AGG | - | chr1_2:7573176-7573195 | None:intergenic | 20.0% |
| !! | TAGATGAAATTGTATTGTAA+TGG | + | chr1_2:7573182-7573201 | Msa0053150:intron | 20.0% |
| !! | AAATATACACTTGAAAATTG+TGG | + | chr1_2:7573887-7573906 | Msa0053150:intron | 20.0% |
| !! | ATTGGTTAATGAAAATAACA+AGG | - | chr1_2:7573972-7573991 | None:intergenic | 20.0% |
| !!! | TTATTTTCATTAACCAATCA+CGG | + | chr1_2:7573974-7573993 | Msa0053150:intron | 20.0% |
| !!! | TATTAAGTGTTTGATTTACT+TGG | + | chr1_2:7574129-7574148 | Msa0053150:intron | 20.0% |
| !! | TATCAATGATTGATATTGTA+TGG | + | chr1_2:7574805-7574824 | Msa0053150:intron | 20.0% |
| !! | TATATTGAAATGTTAACCAT+TGG | + | chr1_2:7574849-7574868 | Msa0053150:intron | 20.0% |
| !!! | TCTGATTTGAAAATAAAACT+AGG | - | chr1_2:7574988-7575007 | None:intergenic | 20.0% |
| !!! | TAGTTTTATTTTCAAATCAG+AGG | + | chr1_2:7574987-7575006 | Msa0053150:CDS | 20.0% |
| !!! | AATGTTTTATTGTCTATTTG+AGG | + | chr1_2:7575027-7575046 | Msa0053150:three_prime_UTR | 20.0% |
| !! | TAATCAAACCTATGAATTAT+AGG | - | chr1_2:7575225-7575244 | None:intergenic | 20.0% |
| !! | ATTTCACTAAAATTAAAGTG+TGG | + | chr1_2:7575446-7575465 | Msa0053150:three_prime_UTR | 20.0% |
| !! | TTTCACTAAAATTAAAGTGT+GGG | + | chr1_2:7575447-7575466 | Msa0053150:three_prime_UTR | 20.0% |
| !! | GTAGATTATGTTTCTGTTTA+TGG | - | chr1_2:7569441-7569460 | Msa0053140:intron | 25.0% |
| ! | AACAGAAACATAATCTACAT+AGG | + | chr1_2:7569443-7569462 | Msa0053150:five_prime_UTR | 25.0% |
| ! | AAACATAATCTACATAGGAA+AGG | + | chr1_2:7569448-7569467 | Msa0053150:five_prime_UTR | 25.0% |
| ! | AATTAGAAAAATGAGTAGGT+AGG | - | chr1_2:7569628-7569647 | None:intergenic | 25.0% |
| !!! | GATTTTTGAGTGTGAAAATT+GGG | - | chr1_2:7569824-7569843 | None:intergenic | 25.0% |
| !!! | AGATTTTTGAGTGTGAAAAT+TGG | - | chr1_2:7569825-7569844 | None:intergenic | 25.0% |
| ! | AATGGAAATCATTGAATGAA+GGG | - | chr1_2:7569915-7569934 | None:intergenic | 25.0% |
| ! | AAATGGAAATCATTGAATGA+AGG | - | chr1_2:7569916-7569935 | None:intergenic | 25.0% |
| !! | TTTTACTGAGGATGAAAAAA+TGG | - | chr1_2:7569994-7570013 | None:intergenic | 25.0% |
| !! | CATTGTTTACTATTTTACTG+AGG | - | chr1_2:7570006-7570025 | None:intergenic | 25.0% |
| ! | CTCAGTAAAATAGTAAACAA+TGG | + | chr1_2:7570004-7570023 | Msa0053150:intron | 25.0% |
| !! | TGTTTAAAACTTTATGCAAG+TGG | + | chr1_2:7570249-7570268 | Msa0053150:intron | 25.0% |
| !! | GTTTAAAACTTTATGCAAGT+GGG | + | chr1_2:7570250-7570269 | Msa0053150:intron | 25.0% |
| !! | TTTAAAACTTTATGCAAGTG+GGG | + | chr1_2:7570251-7570270 | Msa0053150:intron | 25.0% |
| !! | TCCCAAAATTACATTTTAGA+GGG | + | chr1_2:7570410-7570429 | Msa0053150:intron | 25.0% |
| !!! | CTTGTCCTATAGTTTTATAT+GGG | + | chr1_2:7570515-7570534 | Msa0053150:intron | 25.0% |
| !!! | TGACATTCATTTTAATGTCA+AGG | + | chr1_2:7571496-7571515 | Msa0053150:intron | 25.0% |
| !! | TGGTAACTAACTTTAAGAAA+TGG | - | chr1_2:7571770-7571789 | None:intergenic | 25.0% |
| ! | TATAATCTATTGGAAGATTC+TGG | - | chr1_2:7571790-7571809 | None:intergenic | 25.0% |
| ! | TCACTGAAGTTATAATCTAT+TGG | - | chr1_2:7571800-7571819 | None:intergenic | 25.0% |
| ! | TCAAATTATAGAGAATTGCT+TGG | - | chr1_2:7571910-7571929 | None:intergenic | 25.0% |
| !!! | TTGAAACTTAGAAGTATCTT+TGG | - | chr1_2:7572433-7572452 | None:intergenic | 25.0% |
| ! | AAATAAATCAGTGACAGAAA+TGG | - | chr1_2:7572478-7572497 | None:intergenic | 25.0% |
| !! | TTACATTTTCAAAACTAGGT+CGG | + | chr1_2:7572543-7572562 | Msa0053150:intron | 25.0% |
| ! | TGTTAAATGTAGTTACAAGT+TGG | - | chr1_2:7572730-7572749 | None:intergenic | 25.0% |
| ! | ACTTTGAATAACAAAAGCTT+TGG | + | chr1_2:7572805-7572824 | Msa0053150:intron | 25.0% |
| !!! | AAAGCTTTGGTTTGAATAAT+TGG | + | chr1_2:7572818-7572837 | Msa0053150:intron | 25.0% |
| !!! | TTTTTTCTTTCAATTGTAGG+TGG | + | chr1_2:7573044-7573063 | Msa0053150:intron | 25.0% |
| ! | GCATTATAATATGCTTTGAT+CGG | + | chr1_2:7573300-7573319 | Msa0053150:intron | 25.0% |
| ! | TTAACACATTAGTTCATTCA+TGG | - | chr1_2:7573393-7573412 | None:intergenic | 25.0% |
| ! | AAATTCCATGTTTCTTCTAT+AGG | + | chr1_2:7573411-7573430 | Msa0053150:intron | 25.0% |
| ! | AAAAACCTATAGAAGAAACA+TGG | - | chr1_2:7573419-7573438 | None:intergenic | 25.0% |
| !!! | AGTCTATTTTTTCATCCATT+GGG | - | chr1_2:7573522-7573541 | None:intergenic | 25.0% |
| ! | AACTGCAAAATTATCATCAT+GGG | - | chr1_2:7573618-7573637 | None:intergenic | 25.0% |
| ! | AGGTTAAGGAATATAATTTC+AGG | + | chr1_2:7573778-7573797 | Msa0053150:intron | 25.0% |
| ! | CACACAATTTAGACAATTAA+TGG | - | chr1_2:7573829-7573848 | None:intergenic | 25.0% |
| ! | GTATATTTGAACATAAATCG+TGG | - | chr1_2:7573875-7573894 | None:intergenic | 25.0% |
| ! | TCTAAATTGTTGTCGAAATT+TGG | + | chr1_2:7574033-7574052 | Msa0053150:intron | 25.0% |
| !!! | AATGGTTATAGCTATTTTGA+TGG | + | chr1_2:7574166-7574185 | Msa0053150:CDS | 25.0% |
| ! | CAATGAGTTATATTGTTTAC+AGG | + | chr1_2:7574272-7574291 | Msa0053150:intron | 25.0% |
| ! | AATTCCTTACTTTCTTACTT+TGG | + | chr1_2:7574436-7574455 | Msa0053150:intron | 25.0% |
| ! | ATAAGTGTTTATGCTATAAG+CGG | - | chr1_2:7574521-7574540 | None:intergenic | 25.0% |
| ! | TCAGAATAGCTTATGAAAAT+AGG | - | chr1_2:7574620-7574639 | None:intergenic | 25.0% |
| ! | AAATAAGCCGAAACAATTTA+TGG | + | chr1_2:7574651-7574670 | Msa0053150:intron | 25.0% |
| ! | ACATACAAAACATGAAAACT+TGG | - | chr1_2:7575163-7575182 | None:intergenic | 25.0% |
| !! | TTCATGTTTTGTATGTTTGA+AGG | + | chr1_2:7575167-7575186 | Msa0053150:three_prime_UTR | 25.0% |
| ! | ATTTGTAGCCTATAATTCAT+AGG | + | chr1_2:7575214-7575233 | Msa0053150:three_prime_UTR | 25.0% |
| !! | TAACCAATGATTTTATGCTT+TGG | + | chr1_2:7575259-7575278 | Msa0053150:three_prime_UTR | 25.0% |
| !! | ATTGGTGATGATGATAAGAA+GGG | - | chr1_2:7569544-7569563 | Msa0053140:intron | 30.0% |
| !! | AATTGGTGATGATGATAAGA+AGG | - | chr1_2:7569545-7569564 | Msa0053140:intron | 30.0% |
| TAGGTAGGTAAAAAGTTACA+GGG | - | chr1_2:7569613-7569632 | Msa0053140:intron | 30.0% | |
| ATGAAATGAGTAGTTACATC+TGG | - | chr1_2:7569888-7569907 | None:intergenic | 30.0% | |
| ATGGAAATCATTGAATGAAG+GGG | - | chr1_2:7569914-7569933 | None:intergenic | 30.0% | |
| GTAAAATAGTAAACAATGGC+AGG | + | chr1_2:7570008-7570027 | Msa0053150:intron | 30.0% | |
| TATATCCAACAATATGCTGT+AGG | + | chr1_2:7570075-7570094 | Msa0053150:CDS | 30.0% | |
| !! | ATAATGATGATGGTATGTAC+AGG | + | chr1_2:7570114-7570133 | Msa0053150:intron | 30.0% |
| ACCATAATAATTGATCACGT+TGG | + | chr1_2:7570159-7570178 | Msa0053150:intron | 30.0% | |
| TCCAACGTGATCAATTATTA+TGG | - | chr1_2:7570163-7570182 | None:intergenic | 30.0% | |
| TTAATAGACCATATCAAAGC+TGG | - | chr1_2:7570284-7570303 | None:intergenic | 30.0% | |
| TACAATAAAGTTGAGCAGTT+AGG | - | chr1_2:7570312-7570331 | None:intergenic | 30.0% | |
| ! | CTCCCAAAATTACATTTTAG+AGG | + | chr1_2:7570409-7570428 | Msa0053150:intron | 30.0% |
| !!! | CCCCTCTAAAATGTAATTTT+GGG | - | chr1_2:7570414-7570433 | None:intergenic | 30.0% |
| !! | CCCAAAATTACATTTTAGAG+GGG | + | chr1_2:7570411-7570430 | Msa0053150:intron | 30.0% |
| !!! | ACCCCTCTAAAATGTAATTT+TGG | - | chr1_2:7570415-7570434 | None:intergenic | 30.0% |
| TAGAAATCAAGGCCTTTAAA+GGG | - | chr1_2:7570493-7570512 | None:intergenic | 30.0% | |
| TTAGAAATCAAGGCCTTTAA+AGG | - | chr1_2:7570494-7570513 | None:intergenic | 30.0% | |
| !!! | GCTTGTCCTATAGTTTTATA+TGG | + | chr1_2:7570514-7570533 | Msa0053150:intron | 30.0% |
| !!! | TCCTATAGTTTTATATGGGA+TGG | + | chr1_2:7570519-7570538 | Msa0053150:intron | 30.0% |
| TCCATCCCATATAAAACTAT+AGG | - | chr1_2:7570523-7570542 | None:intergenic | 30.0% | |
| GAAAAGAGGTTATATCATGT+GGG | - | chr1_2:7570605-7570624 | None:intergenic | 30.0% | |
| AGGGTTATATTGTATATTGC+TGG | - | chr1_2:7570644-7570663 | None:intergenic | 30.0% | |
| ACAATATAACCCTTGTCTTT+AGG | + | chr1_2:7570651-7570670 | Msa0053150:intron | 30.0% | |
| AATCGAAGAAGAGATTTAAC+GGG | - | chr1_2:7570795-7570814 | None:intergenic | 30.0% | |
| GAATCGAAGAAGAGATTTAA+CGG | - | chr1_2:7570796-7570815 | None:intergenic | 30.0% | |
| TTAAATCTCTTCTTCGATTC+AGG | + | chr1_2:7570796-7570815 | Msa0053150:intron | 30.0% | |
| !! | ATGACGGATTCTCAATTAAA+TGG | - | chr1_2:7571016-7571035 | None:intergenic | 30.0% |
| TTGTTGTCCAAAGATAGTAA+GGG | - | chr1_2:7571055-7571074 | None:intergenic | 30.0% | |
| ! | TTTGTTGTCCAAAGATAGTA+AGG | - | chr1_2:7571056-7571075 | None:intergenic | 30.0% |
| CAATTCAACTGACACTTATA+AGG | + | chr1_2:7571285-7571304 | Msa0053150:intron | 30.0% | |
| ATTGTGAGAATTCTAAGTGT+GGG | + | chr1_2:7571346-7571365 | Msa0053150:intron | 30.0% | |
| TTCTATTGTTCCTCTTCATT+TGG | + | chr1_2:7571399-7571418 | Msa0053150:intron | 30.0% | |
| TGTTATTGTTTCACTTGATC+TGG | + | chr1_2:7571544-7571563 | Msa0053150:intron | 30.0% | |
| GTTATTGTTTCACTTGATCT+GGG | + | chr1_2:7571545-7571564 | Msa0053150:intron | 30.0% | |
| TTATGGCAGATGATGAAATT+CGG | + | chr1_2:7571725-7571744 | Msa0053150:intron | 30.0% | |
| AACCAGAAATTATATACGCT+GGG | + | chr1_2:7571988-7572007 | Msa0053150:intron | 30.0% | |
| TAAACTTTCAACGTAAACCT+TGG | - | chr1_2:7572020-7572039 | None:intergenic | 30.0% | |
| ! | ACGTATATTTTATATCGCTG+AGG | + | chr1_2:7572230-7572249 | Msa0053150:intron | 30.0% |
| ! | AATTCAGAAAAAAGTGCACT+TGG | - | chr1_2:7572381-7572400 | None:intergenic | 30.0% |
| TCACAAGGTAAGATCATATT+TGG | + | chr1_2:7572940-7572959 | Msa0053150:intron | 30.0% | |
| ! | TGAATGCAAGTTTTTCACAT+AGG | + | chr1_2:7572973-7572992 | Msa0053150:intron | 30.0% |
| ! | GAATGCAAGTTTTTCACATA+GGG | + | chr1_2:7572974-7572993 | Msa0053150:intron | 30.0% |
| ! | AAAAAGATTTTCTCCGTTTG+GGG | - | chr1_2:7573094-7573113 | None:intergenic | 30.0% |
| ! | GAAAAAGATTTTCTCCGTTT+GGG | - | chr1_2:7573095-7573114 | None:intergenic | 30.0% |
| ! | AGAAAAAGATTTTCTCCGTT+TGG | - | chr1_2:7573096-7573115 | None:intergenic | 30.0% |
| ! | AAACGGAGAAAATCTTTTTC+TGG | + | chr1_2:7573095-7573114 | Msa0053150:CDS | 30.0% |
| !!! | GTTCCTATATTTTTTAGCCA+TGG | + | chr1_2:7573130-7573149 | Msa0053150:intron | 30.0% |
| ATGCCATGGCTAAAAAATAT+AGG | - | chr1_2:7573136-7573155 | None:intergenic | 30.0% | |
| TAACATGAAGAAATATGCCA+TGG | - | chr1_2:7573150-7573169 | None:intergenic | 30.0% | |
| !!! | GTCTATTTTTTCATCCATTG+GGG | - | chr1_2:7573521-7573540 | None:intergenic | 30.0% |
| !!! | CAGTCTATTTTTTCATCCAT+TGG | - | chr1_2:7573523-7573542 | None:intergenic | 30.0% |
| CAACTGCAAAATTATCATCA+TGG | - | chr1_2:7573619-7573638 | None:intergenic | 30.0% | |
| !! | GGTTAATTTTGGCAAGTATA+AGG | + | chr1_2:7573758-7573777 | Msa0053150:intron | 30.0% |
| ! | TTTTGGCAAGTATAAGGTTA+AGG | + | chr1_2:7573764-7573783 | Msa0053150:intron | 30.0% |
| ! | CTGTGTTTAATTGTGTTGAT+TGG | + | chr1_2:7573926-7573945 | Msa0053150:intron | 30.0% |
| AGTTAATTATGTTCCGTGAT+TGG | - | chr1_2:7573990-7574009 | None:intergenic | 30.0% | |
| ! | TGTTTGATTTACTTGGTTTC+AGG | + | chr1_2:7574136-7574155 | Msa0053150:intron | 30.0% |
| GTAAAATCAGCAAAGAAGAT+TGG | + | chr1_2:7574345-7574364 | Msa0053150:CDS | 30.0% | |
| TGACATGCCATAAATTGTTT+CGG | - | chr1_2:7574661-7574680 | None:intergenic | 30.0% | |
| TCAGTAGAAAAGCTCAAATA+AGG | + | chr1_2:7574729-7574748 | Msa0053150:intron | 30.0% | |
| TAATGAAGTGAGAAAACCAA+TGG | - | chr1_2:7574868-7574887 | None:intergenic | 30.0% | |
| !! | TTTATTTTCAAATCAGAGGC+TGG | + | chr1_2:7574991-7575010 | Msa0053150:CDS | 30.0% |
| !! | AATTTGCTGACAAACAATCA+TGG | + | chr1_2:7575095-7575114 | Msa0053150:three_prime_UTR | 30.0% |
| TACAAAACATGAAAACTTGG+TGG | - | chr1_2:7575160-7575179 | None:intergenic | 30.0% | |
| ! | TAGGCTACAAATATTTCTGT+TGG | - | chr1_2:7575206-7575225 | None:intergenic | 30.0% |
| GAACCAAAGCATAAAATCAT+TGG | - | chr1_2:7575265-7575284 | None:intergenic | 30.0% | |
| AAGAAGGGTTATGATGGTTA+TGG | - | chr1_2:7569529-7569548 | Msa0053140:intron | 35.0% | |
| GATGATAAGAAGGGTTATGA+TGG | - | chr1_2:7569535-7569554 | Msa0053140:intron | 35.0% | |
| ATCACCAATTTCGATCATAG+AGG | + | chr1_2:7569555-7569574 | Msa0053150:five_prime_UTR | 35.0% | |
| AGGTAGGTAAAAAGTTACAG+GGG | - | chr1_2:7569612-7569631 | Msa0053140:intron | 35.0% | |
| GTAGGTAGGTAAAAAGTTAC+AGG | - | chr1_2:7569614-7569633 | Msa0053140:intron | 35.0% | |
| !!! | TGCATGTTTTTTGATTCCAC+AGG | + | chr1_2:7569691-7569710 | Msa0053150:intron | 35.0% |
| AGGATGTATCTAGAGGAATA+GGG | + | chr1_2:7569711-7569730 | Msa0053150:intron | 35.0% | |
| TGGAAATCATTGAATGAAGG+GGG | - | chr1_2:7569913-7569932 | None:intergenic | 35.0% | |
| !! | TTGTATTGATTGAGCCAAAG+TGG | - | chr1_2:7569949-7569968 | None:intergenic | 35.0% |
| AAACACCTACAGCATATTGT+TGG | - | chr1_2:7570083-7570102 | None:intergenic | 35.0% | |
| GAGTTAATGTACCCCTTTAA+AGG | + | chr1_2:7570478-7570497 | Msa0053150:intron | 35.0% | |
| ! | AGAAATCAAGGCCTTTAAAG+GGG | - | chr1_2:7570492-7570511 | None:intergenic | 35.0% |
| TAGGACAAGCTTAGAAATCA+AGG | - | chr1_2:7570504-7570523 | None:intergenic | 35.0% | |
| GGAAAAGAGGTTATATCATG+TGG | - | chr1_2:7570606-7570625 | None:intergenic | 35.0% | |
| TGGTTGAAACCTAAAGACAA+GGG | - | chr1_2:7570663-7570682 | None:intergenic | 35.0% | |
| ATCGAAGAAGAGATTTAACG+GGG | - | chr1_2:7570794-7570813 | None:intergenic | 35.0% | |
| ACTAAGGTGTAGTTTCACAA+AGG | - | chr1_2:7570862-7570881 | None:intergenic | 35.0% | |
| ATTCTCAATTAAATGGCGCA+TGG | - | chr1_2:7571009-7571028 | None:intergenic | 35.0% | |
| ! | ATAGCTGAAAGTTTCAAGTG+GGG | - | chr1_2:7571233-7571252 | None:intergenic | 35.0% |
| ! | GATAGCTGAAAGTTTCAAGT+GGG | - | chr1_2:7571234-7571253 | None:intergenic | 35.0% |
| TGATAGCTGAAAGTTTCAAG+TGG | - | chr1_2:7571235-7571254 | None:intergenic | 35.0% | |
| CTTGAAACTTTCAGCTATCA+TGG | + | chr1_2:7571235-7571254 | Msa0053150:intron | 35.0% | |
| ! | GGCAATTTCAACTTCAAGTT+TGG | + | chr1_2:7571256-7571275 | Msa0053150:intron | 35.0% |
| TTCAACTGACACTTATAAGG+TGG | + | chr1_2:7571288-7571307 | Msa0053150:intron | 35.0% | |
| CATTGTGAGAATTCTAAGTG+TGG | + | chr1_2:7571345-7571364 | Msa0053150:intron | 35.0% | |
| TTCCTCTTCATTTGGACTTT+GGG | + | chr1_2:7571407-7571426 | Msa0053150:intron | 35.0% | |
| ! | TGGACTTTGGGGAATATTAT+TGG | + | chr1_2:7571419-7571438 | Msa0053150:intron | 35.0% |
| TGGGGAATATTATTGGAATG+CGG | + | chr1_2:7571426-7571445 | Msa0053150:intron | 35.0% | |
| TATGGCAGATGATGAAATTC+GGG | + | chr1_2:7571726-7571745 | Msa0053150:intron | 35.0% | |
| GAACCAGAAATTATATACGC+TGG | + | chr1_2:7571987-7572006 | Msa0053150:intron | 35.0% | |
| AACCCAGCGTATATAATTTC+TGG | - | chr1_2:7571993-7572012 | None:intergenic | 35.0% | |
| CTTGAGGATAAGGTTTCAAA+AGG | - | chr1_2:7572050-7572069 | None:intergenic | 35.0% | |
| !!! | CTTTTGAAACCTTATCCTCA+AGG | + | chr1_2:7572048-7572067 | Msa0053150:intron | 35.0% |
| ! | CCTTCTTTTATGAGTGATAG+TGG | - | chr1_2:7572275-7572294 | None:intergenic | 35.0% |
| CCACTATCACTCATAAAAGA+AGG | + | chr1_2:7572272-7572291 | Msa0053150:intron | 35.0% | |
| AATGAAAACTCAAGTCCACA+AGG | - | chr1_2:7572321-7572340 | None:intergenic | 35.0% | |
| ! | ATTTCGTTTTCCCCTTCTTT+TGG | + | chr1_2:7572398-7572417 | Msa0053150:intron | 35.0% |
| ! | TGCACAACTTTTGTATGACA+AGG | + | chr1_2:7572505-7572524 | Msa0053150:intron | 35.0% |
| ! | GCACAACTTTTGTATGACAA+GGG | + | chr1_2:7572506-7572525 | Msa0053150:intron | 35.0% |
| ! | CACAACTTTTGTATGACAAG+GGG | + | chr1_2:7572507-7572526 | Msa0053150:intron | 35.0% |
| ! | ACAACTTTTGTATGACAAGG+GGG | + | chr1_2:7572508-7572527 | Msa0053150:intron | 35.0% |
| ! | AGTAGCTCTGTAATTGATGA+TGG | + | chr1_2:7572911-7572930 | Msa0053150:CDS | 35.0% |
| !!! | CAAAACAGTTGCTGATTTTG+AGG | + | chr1_2:7573259-7573278 | Msa0053150:intron | 35.0% |
| ! | TTCAGTTGAAGACAGTCTTT+TGG | + | chr1_2:7573547-7573566 | Msa0053150:intron | 35.0% |
| ACATCAAATTTCGACAACAG+TGG | + | chr1_2:7573737-7573756 | Msa0053150:intron | 35.0% | |
| ! | TCGACAACAGTGGTTAATTT+TGG | + | chr1_2:7573747-7573766 | Msa0053150:intron | 35.0% |
| TTATAATGCCTAAAGCGATG+CGG | - | chr1_2:7574099-7574118 | None:intergenic | 35.0% | |
| TCTTGAAGCTATTGTTGACA+AGG | + | chr1_2:7574217-7574236 | Msa0053150:CDS | 35.0% | |
| ATCATTGTCTTGATCAACGT+CGG | - | chr1_2:7574324-7574343 | None:intergenic | 35.0% | |
| CAGACCAAAGTAAGAAAGTA+AGG | - | chr1_2:7574443-7574462 | None:intergenic | 35.0% | |
| TGTATGCGAATTGTTCACTT+TGG | - | chr1_2:7574473-7574492 | None:intergenic | 35.0% | |
| ACAATTCGCATACAAACTTG+TGG | + | chr1_2:7574479-7574498 | Msa0053150:intron | 35.0% | |
| ! | GGTTTTCTCACTTCATTAAG+AGG | + | chr1_2:7574870-7574889 | Msa0053150:intron | 35.0% |
| AATAAAACTAGGAAACGCAG+TGG | - | chr1_2:7574977-7574996 | None:intergenic | 35.0% | |
| ! | GTCTATTTGAGGCAAATGAT+TGG | + | chr1_2:7575038-7575057 | Msa0053150:three_prime_UTR | 35.0% |
| ! | TTTGAGGCAAATGATTGGAT+TGG | + | chr1_2:7575043-7575062 | Msa0053150:three_prime_UTR | 35.0% |
| !! | GGATTGGTTATTGCTGTAAA+TGG | + | chr1_2:7575059-7575078 | Msa0053150:three_prime_UTR | 35.0% |
| GCTGTAAATGGTAACAACAT+TGG | + | chr1_2:7575071-7575090 | Msa0053150:three_prime_UTR | 35.0% | |
| ! | ATGAAAACTTGGTGGCTTTA+GGG | - | chr1_2:7575152-7575171 | None:intergenic | 35.0% |
| CGGTCACTCTTTATGTATAA+TGG | - | chr1_2:7575287-7575306 | None:intergenic | 35.0% | |
| CTAGCCTCTATGATCGAAAT+TGG | - | chr1_2:7569562-7569581 | Msa0053140:intron | 40.0% | |
| AAAGTTACAGGGGAATGAGT+AGG | - | chr1_2:7569602-7569621 | Msa0053140:intron | 40.0% | |
| ATTCCACAGGATGTATCTAG+AGG | + | chr1_2:7569704-7569723 | Msa0053150:intron | 40.0% | |
| ATTCCTCTAGATACATCCTG+TGG | - | chr1_2:7569710-7569729 | None:intergenic | 40.0% | |
| CAGGATGTATCTAGAGGAAT+AGG | + | chr1_2:7569710-7569729 | Msa0053150:intron | 40.0% | |
| GGATGTATCTAGAGGAATAG+GGG | + | chr1_2:7569712-7569731 | Msa0053150:intron | 40.0% | |
| !! | GTTTTTGTCTTTGCTGTCAC+AGG | + | chr1_2:7569779-7569798 | Msa0053150:CDS | 40.0% |
| ! | TACATCTGGTTTCTTGAGCA+AGG | - | chr1_2:7569874-7569893 | None:intergenic | 40.0% |
| GGAAATCATTGAATGAAGGG+GGG | - | chr1_2:7569912-7569931 | None:intergenic | 40.0% | |
| ! | GTTTGAAGCCAGCTTTGATA+TGG | + | chr1_2:7570273-7570292 | Msa0053150:intron | 40.0% |
| ATATGGGATGGAAGCTGAAA+TGG | + | chr1_2:7570531-7570550 | Msa0053150:intron | 40.0% | |
| CAAATCTGTTGTGGGAAAAG+AGG | - | chr1_2:7570619-7570638 | None:intergenic | 40.0% | |
| GTGGTTGAAACCTAAAGACA+AGG | - | chr1_2:7570664-7570683 | None:intergenic | 40.0% | |
| !! | TTTTCAATGCTGTGTCGTTG+TGG | - | chr1_2:7570683-7570702 | None:intergenic | 40.0% |
| ! | TTCGTGTTGCTGATCTACTA+AGG | - | chr1_2:7570878-7570897 | None:intergenic | 40.0% |
| ATTAAATGGCGCATGGAGTA+AGG | - | chr1_2:7571002-7571021 | None:intergenic | 40.0% | |
| TCGATGGAAAAGGAGAATGA+CGG | - | chr1_2:7571032-7571051 | None:intergenic | 40.0% | |
| ATAGTAAGGGTCGATGGAAA+AGG | - | chr1_2:7571042-7571061 | None:intergenic | 40.0% | |
| CAACAAAGATTGCTCTCGTA+TGG | + | chr1_2:7571069-7571088 | Msa0053150:intron | 40.0% | |
| AAAGATTGCTCTCGTATGGT+TGG | + | chr1_2:7571073-7571092 | Msa0053150:intron | 40.0% | |
| CCAGTACTCTCTATATGCAT+CGG | - | chr1_2:7571140-7571159 | None:intergenic | 40.0% | |
| !! | GAGAGTACTGGTTTCGTTTA+TGG | + | chr1_2:7571149-7571168 | Msa0053150:intron | 40.0% |
| AAATATCGCAGATGTTGTCC+TGG | - | chr1_2:7571185-7571204 | None:intergenic | 40.0% | |
| AGGACAACATCTGCGATATT+TGG | + | chr1_2:7571184-7571203 | Msa0053150:intron | 40.0% | |
| AACTGACACTTATAAGGTGG+TGG | + | chr1_2:7571291-7571310 | Msa0053150:intron | 40.0% | |
| TCTGTTGATGTGGATGGTAA+CGG | - | chr1_2:7571321-7571340 | None:intergenic | 40.0% | |
| ACAATGCTTCTCTGTTGATG+TGG | - | chr1_2:7571331-7571350 | None:intergenic | 40.0% | |
| ! | TAAGTGTGGGTGATAACGTT+TGG | + | chr1_2:7571359-7571378 | Msa0053150:intron | 40.0% |
| GTTCCTCTTCATTTGGACTT+TGG | + | chr1_2:7571406-7571425 | Msa0053150:intron | 40.0% | |
| TCCTCTTCATTTGGACTTTG+GGG | + | chr1_2:7571408-7571427 | Msa0053150:intron | 40.0% | |
| GGGGAATATTATTGGAATGC+GGG | + | chr1_2:7571427-7571446 | Msa0053150:intron | 40.0% | |
| ATGGCAGATGATGAAATTCG+GGG | + | chr1_2:7571727-7571746 | Msa0053150:intron | 40.0% | |
| ! | GATGCAGTATCATTTTCCGT+TGG | + | chr1_2:7571826-7571845 | Msa0053150:intron | 40.0% |
| CTTATCCTCAAGGTTGAAGT+CGG | + | chr1_2:7572058-7572077 | Msa0053150:intron | 40.0% | |
| TTATCCTCAAGGTTGAAGTC+GGG | + | chr1_2:7572059-7572078 | Msa0053150:intron | 40.0% | |
| TCGAGCTTGAGGAAAAGAAA+AGG | + | chr1_2:7572151-7572170 | Msa0053150:intron | 40.0% | |
| !!! | TTTTCCCCTTCTTTTGGTTC+TGG | + | chr1_2:7572404-7572423 | Msa0053150:intron | 40.0% |
| !! | TGATGATGGCTTGATTCACA+AGG | + | chr1_2:7572925-7572944 | Msa0053150:CDS | 40.0% |
| GCACTATTTCAAACCCCAAA+CGG | + | chr1_2:7573078-7573097 | Msa0053150:CDS | 40.0% | |
| GAGGAACTAACATAGCGAAA+TGG | + | chr1_2:7573278-7573297 | Msa0053150:intron | 40.0% | |
| CATCACTGGAAGAATCACAA+TGG | - | chr1_2:7573370-7573389 | None:intergenic | 40.0% | |
| TAGTTCATTCATGGCATCAC+TGG | - | chr1_2:7573384-7573403 | None:intergenic | 40.0% | |
| ! | TTTTCATCCATTGGGGCATA+AGG | - | chr1_2:7573514-7573533 | None:intergenic | 40.0% |
| TCTATGACCTGAGACAAACA+GGG | + | chr1_2:7573648-7573667 | Msa0053150:CDS | 40.0% | |
| CAATAAACCCTGTTTGTCTC+AGG | - | chr1_2:7573658-7573677 | None:intergenic | 40.0% | |
| ! | TTGGTTTCAGGTGAAGCAAA+TGG | + | chr1_2:7574148-7574167 | Msa0053150:intron | 40.0% |
| ATTGTCTGCAGACAAAGTGA+AGG | - | chr1_2:7574299-7574318 | None:intergenic | 40.0% | |
| GACGTTGATCAAGACAATGA+TGG | + | chr1_2:7574323-7574342 | Msa0053150:CDS | 40.0% | |
| GTCATGTTCTTCAAGAGAGA+CGG | - | chr1_2:7574392-7574411 | None:intergenic | 40.0% | |
| ! | AAGCTATTCTGAAGAGTGTG+TGG | + | chr1_2:7574628-7574647 | Msa0053150:intron | 40.0% |
| TCAAATAAGGCAATGCAGAC+AGG | + | chr1_2:7574742-7574761 | Msa0053150:intron | 40.0% | |
| !! | TGTCACTTTGTCATCTTCCA+GGG | + | chr1_2:7574945-7574964 | Msa0053150:intron | 40.0% |
| ! | CATGAAAACTTGGTGGCTTT+AGG | - | chr1_2:7575153-7575172 | None:intergenic | 40.0% |
| ATCACTTGAAGATGTCACTG+CGG | - | chr1_2:7575307-7575326 | None:intergenic | 40.0% | |
| CTAAAGACAAGCTTACTTGC+GGG | - | chr1_2:7575349-7575368 | None:intergenic | 40.0% | |
| CCTAAAGACAAGCTTACTTG+CGG | - | chr1_2:7575350-7575369 | None:intergenic | 40.0% | |
| CGCAAGTAAGCTTGTCTTTA+GGG | + | chr1_2:7575348-7575367 | Msa0053150:three_prime_UTR | 40.0% | |
| ACCTCAAAGACAGCTATGAG+TGG | - | chr1_2:7569761-7569780 | None:intergenic | 45.0% | |
| TGCTGGTGCAAATCTGTTGT+GGG | - | chr1_2:7570627-7570646 | None:intergenic | 45.0% | |
| TTGCTGGTGCAAATCTGTTG+TGG | - | chr1_2:7570628-7570647 | None:intergenic | 45.0% | |
| GAGTCATAGACGCAACTGAT+TGG | - | chr1_2:7570719-7570738 | None:intergenic | 45.0% | |
| TCAGGTGTGTCAGTAAGTCT+TGG | + | chr1_2:7570814-7570833 | Msa0053150:intron | 45.0% | |
| CAAAGGCTTGATCAGAGATG+AGG | - | chr1_2:7570845-7570864 | None:intergenic | 45.0% | |
| ATGACAGTGACGATGTACCT+GGG | + | chr1_2:7570958-7570977 | Msa0053150:intron | 45.0% | |
| CCAAAGATAGTAAGGGTCGA+TGG | - | chr1_2:7571048-7571067 | None:intergenic | 45.0% | |
| CCATCGACCCTTACTATCTT+TGG | + | chr1_2:7571045-7571064 | Msa0053150:intron | 45.0% | |
| ! | CGTATGGTTGGTACATGCAA+TGG | + | chr1_2:7571085-7571104 | Msa0053150:intron | 45.0% |
| ! | CCGATGCATATAGAGAGTAC+TGG | + | chr1_2:7571137-7571156 | Msa0053150:intron | 45.0% |
| GTTTATGGAACCTAGCAACC+AGG | + | chr1_2:7571164-7571183 | Msa0053150:intron | 45.0% | |
| CTGTTGATGTGGATGGTAAC+GGG | - | chr1_2:7571320-7571339 | None:intergenic | 45.0% | |
| TGCTTCTCTGTTGATGTGGA+TGG | - | chr1_2:7571327-7571346 | None:intergenic | 45.0% | |
| TCCCCAAAGTCCAAATGAAG+AGG | - | chr1_2:7571412-7571431 | None:intergenic | 45.0% | |
| AATGCGGGTGTGTATTTGAG+TGG | + | chr1_2:7571442-7571461 | Msa0053150:intron | 45.0% | |
| !! | ACACCAACTGTTGGTTCAGT+AGG | - | chr1_2:7571623-7571642 | None:intergenic | 45.0% |
| ! | TGAACCAACAGTTGGTGTGT+TGG | + | chr1_2:7571625-7571644 | Msa0053150:intron | 45.0% |
| ! | GAACCAACAGTTGGTGTGTT+GGG | + | chr1_2:7571626-7571645 | Msa0053150:intron | 45.0% |
| ! | AACCAACAGTTGGTGTGTTG+GGG | + | chr1_2:7571627-7571646 | Msa0053150:intron | 45.0% |
| CCATCCTCAGAAAGAAGCAA+CGG | - | chr1_2:7571854-7571873 | None:intergenic | 45.0% | |
| TATACGCTGGGTTTCAACCA+AGG | + | chr1_2:7572000-7572019 | Msa0053150:intron | 45.0% | |
| CGACTTCAACCTTGAGGATA+AGG | - | chr1_2:7572060-7572079 | None:intergenic | 45.0% | |
| !! | AACAGTTGGTGAGGCAACTT+TGG | - | chr1_2:7572114-7572133 | None:intergenic | 45.0% |
| ! | ACAAGACAGAACAGTTGGTG+AGG | - | chr1_2:7572123-7572142 | None:intergenic | 45.0% |
| CAGTGACAAGACAGAACAGT+TGG | - | chr1_2:7572128-7572147 | None:intergenic | 45.0% | |
| TGTCACTGTATTCGAGCTTG+AGG | + | chr1_2:7572140-7572159 | Msa0053150:intron | 45.0% | |
| CTCTGATGTACACAACCTTG+TGG | + | chr1_2:7572303-7572322 | Msa0053150:intron | 45.0% | |
| GTGACCAGAACCAAAAGAAG+GGG | - | chr1_2:7572411-7572430 | None:intergenic | 45.0% | |
| GGTGACCAGAACCAAAAGAA+GGG | - | chr1_2:7572412-7572431 | None:intergenic | 45.0% | |
| TGGTGACCAGAACCAAAAGA+AGG | - | chr1_2:7572413-7572432 | None:intergenic | 45.0% | |
| TTTCCATCCTTATGCCCCAA+TGG | + | chr1_2:7573504-7573523 | Msa0053150:CDS | 45.0% | |
| CTCTATGACCTGAGACAAAC+AGG | + | chr1_2:7573647-7573666 | Msa0053150:CDS | 45.0% | |
| AACAGGGTTTATTGAGCCAG+AGG | + | chr1_2:7573664-7573683 | Msa0053150:CDS | 45.0% | |
| ACTACTGAACTCACTTCCTC+TGG | - | chr1_2:7573683-7573702 | None:intergenic | 45.0% | |
| !! | GTGTCACTTTGTCATCTTCC+AGG | + | chr1_2:7574944-7574963 | Msa0053150:intron | 45.0% |
| !! | TGGCTTTAGGGTATGATTGC+AGG | - | chr1_2:7575140-7575159 | None:intergenic | 45.0% |
| CCGCAAGTAAGCTTGTCTTT+AGG | + | chr1_2:7575347-7575366 | Msa0053150:three_prime_UTR | 45.0% | |
| !! | AAACAATAATAATAAATATA+AGG | - | chr1_2:7570234-7570253 | None:intergenic | 5.0% |
| TACAGGGGAATGAGTAGGCA+TGG | - | chr1_2:7569597-7569616 | Msa0053140:intron | 50.0% | |
| GCCACTCATAGCTGTCTTTG+AGG | + | chr1_2:7569757-7569776 | Msa0053150:CDS | 50.0% | |
| TGCGTCTATGACTCTATCGC+CGG | + | chr1_2:7570725-7570744 | Msa0053150:intron | 50.0% | |
| ATATCGTCAGAGAGGACCAC+CGG | - | chr1_2:7570747-7570766 | None:intergenic | 50.0% | |
| CAGCGATGATATCGTCAGAG+AGG | - | chr1_2:7570755-7570774 | None:intergenic | 50.0% | |
| CTCTGACGATATCATCGCTG+AGG | + | chr1_2:7570755-7570774 | Msa0053150:intron | 50.0% | |
| CACATCACAGATCTCACACC+AGG | + | chr1_2:7570924-7570943 | Msa0053150:intron | 50.0% | |
| GATGACAGTGACGATGTACC+TGG | + | chr1_2:7570957-7570976 | Msa0053150:intron | 50.0% | |
| TGACAGTGACGATGTACCTG+GGG | + | chr1_2:7570959-7570978 | Msa0053150:intron | 50.0% | |
| CAGATGTTGTCCTGGTTGCT+AGG | - | chr1_2:7571177-7571196 | None:intergenic | 50.0% | |
| GAGTGGCACACACACTTAAC+TGG | + | chr1_2:7571459-7571478 | Msa0053150:intron | 50.0% | |
| ! | AATCAGTACTTGCTGCCTCG+TGG | + | chr1_2:7571581-7571600 | Msa0053150:intron | 50.0% |
| GGAACTTCCTCAAAACCACG+AGG | - | chr1_2:7571599-7571618 | None:intergenic | 50.0% | |
| !! | CCAACTGTTGGTTCAGTAGG+TGG | - | chr1_2:7571620-7571639 | None:intergenic | 50.0% |
| CCACCTACTGAACCAACAGT+TGG | + | chr1_2:7571617-7571636 | Msa0053150:intron | 50.0% | |
| ! | ACCAACAGTTGGTGTGTTGG+GGG | + | chr1_2:7571628-7571647 | Msa0053150:intron | 50.0% |
| GCAGATGATGAAATTCGGGG+TGG | + | chr1_2:7571730-7571749 | Msa0053150:intron | 50.0% | |
| AATTCGGGGTGGAAGAGTCT+TGG | + | chr1_2:7571741-7571760 | Msa0053150:intron | 50.0% | |
| GAAAGAAGCAACGGCACCAA+CGG | - | chr1_2:7571845-7571864 | None:intergenic | 50.0% | |
| ! | CCGTTGCTTCTTTCTGAGGA+TGG | + | chr1_2:7571851-7571870 | Msa0053150:intron | 50.0% |
| GTTTCCCGACTTCAACCTTG+AGG | - | chr1_2:7572066-7572085 | None:intergenic | 50.0% | |
| GTCGGGAAACTGCTACTGAA+TGG | + | chr1_2:7572076-7572095 | Msa0053150:intron | 50.0% | |
| ! | TGAGGCAACTTTGGAGGACA+AGG | - | chr1_2:7572105-7572124 | None:intergenic | 50.0% |
| !! | AGTTGGTGAGGCAACTTTGG+AGG | - | chr1_2:7572111-7572130 | None:intergenic | 50.0% |
| CATCCATTGGGGCATAAGGA+TGG | - | chr1_2:7573510-7573529 | None:intergenic | 50.0% | |
| CACATAAGCCGCATCGCTTT+AGG | + | chr1_2:7574088-7574107 | Msa0053150:intron | 50.0% | |
| AAACGCAGTGGTGATATCCC+TGG | - | chr1_2:7574965-7574984 | None:intergenic | 50.0% | |
| GTCTATGACTCTATCGCCGG+TGG | + | chr1_2:7570728-7570747 | Msa0053150:intron | 55.0% | |
| ACGACACTGTAATCCACCCC+AGG | - | chr1_2:7570978-7570997 | None:intergenic | 55.0% | |
| !! | CTTGCTGCCTCGTGGTTTTG+AGG | + | chr1_2:7571589-7571608 | Msa0053150:intron | 55.0% |
| ! | CCAACAGTTGGTGTGTTGGG+GGG | + | chr1_2:7571629-7571648 | Msa0053150:intron | 55.0% |
| !! | GGTGCCGTTGCTTCTTTCTG+AGG | + | chr1_2:7571847-7571866 | Msa0053150:intron | 55.0% |
| TCGCTGAGGATGCATCAGCT+TGG | + | chr1_2:7572244-7572263 | Msa0053150:intron | 55.0% | |
| CGCTGAGGATGCATCAGCTT+GGG | + | chr1_2:7572245-7572264 | Msa0053150:intron | 55.0% | |
| GCTGAGGATGCATCAGCTTG+GGG | + | chr1_2:7572246-7572265 | Msa0053150:intron | 55.0% | |
| GATGGAAAACACTGAGCGCG+TGG | - | chr1_2:7573492-7573511 | None:intergenic | 55.0% | |
| TCTCACACCAGGCGACTCGT+CGG | + | chr1_2:7570935-7570954 | Msa0053150:intron | 60.0% | |
| CAGTGACGATGTACCTGGGG+TGG | + | chr1_2:7570962-7570981 | Msa0053150:intron | 60.0% | |
| CCCCCCAACACACCAACTGT+TGG | - | chr1_2:7571632-7571651 | None:intergenic | 60.0% | |
| CTGTCATCCGACGAGTCGCC+TGG | - | chr1_2:7570945-7570964 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 7569429 | 7575481 | 7569429 | ID=Msa0053150;Name=Msa0053150 |
| chr1_2 | mRNA | 7569429 | 7575481 | 7569429 | ID=Msa0053150-mRNA-1;Parent=Msa0053150;Name=Msa0053150-mRNA-1;_AED=0.12;_eAED=0.12;_QI=167|0.77|0.9|1|0.88|0.9|10|461|268 |
| chr1_2 | exon | 7569429 | 7569613 | 7569429 | ID=Msa0053150-mRNA-1:exon:2558;Parent=Msa0053150-mRNA-1 |
| chr1_2 | exon | 7569713 | 7569890 | 7569713 | ID=Msa0053150-mRNA-1:exon:2559;Parent=Msa0053150-mRNA-1 |
| chr1_2 | exon | 7570069 | 7570125 | 7570069 | ID=Msa0053150-mRNA-1:exon:2560;Parent=Msa0053150-mRNA-1 |
| chr1_2 | exon | 7572864 | 7572946 | 7572864 | ID=Msa0053150-mRNA-1:exon:2561;Parent=Msa0053150-mRNA-1 |
| chr1_2 | exon | 7573063 | 7573122 | 7573063 | ID=Msa0053150-mRNA-1:exon:2562;Parent=Msa0053150-mRNA-1 |
| chr1_2 | exon | 7573433 | 7573541 | 7573433 | ID=Msa0053150-mRNA-1:exon:2563;Parent=Msa0053150-mRNA-1 |
| chr1_2 | exon | 7573636 | 7573688 | 7573636 | ID=Msa0053150-mRNA-1:exon:2564;Parent=Msa0053150-mRNA-1 |
| chr1_2 | exon | 7574158 | 7574238 | 7574158 | ID=Msa0053150-mRNA-1:exon:2565;Parent=Msa0053150-mRNA-1 |
| chr1_2 | exon | 7574314 | 7574426 | 7574314 | ID=Msa0053150-mRNA-1:exon:2566;Parent=Msa0053150-mRNA-1 |
| chr1_2 | exon | 7574966 | 7575481 | 7574966 | ID=Msa0053150-mRNA-1:exon:2567;Parent=Msa0053150-mRNA-1 |
| chr1_2 | five_prime_UTR | 7569429 | 7569595 | 7569429 | ID=Msa0053150-mRNA-1:five_prime_utr;Parent=Msa0053150-mRNA-1 |
| chr1_2 | CDS | 7569596 | 7569613 | 7569596 | ID=Msa0053150-mRNA-1:cds;Parent=Msa0053150-mRNA-1 |
| chr1_2 | CDS | 7569713 | 7569890 | 7569713 | ID=Msa0053150-mRNA-1:cds;Parent=Msa0053150-mRNA-1 |
| chr1_2 | CDS | 7570069 | 7570125 | 7570069 | ID=Msa0053150-mRNA-1:cds;Parent=Msa0053150-mRNA-1 |
| chr1_2 | CDS | 7572864 | 7572946 | 7572864 | ID=Msa0053150-mRNA-1:cds;Parent=Msa0053150-mRNA-1 |
| chr1_2 | CDS | 7573063 | 7573122 | 7573063 | ID=Msa0053150-mRNA-1:cds;Parent=Msa0053150-mRNA-1 |
| chr1_2 | CDS | 7573433 | 7573541 | 7573433 | ID=Msa0053150-mRNA-1:cds;Parent=Msa0053150-mRNA-1 |
| chr1_2 | CDS | 7573636 | 7573688 | 7573636 | ID=Msa0053150-mRNA-1:cds;Parent=Msa0053150-mRNA-1 |
| chr1_2 | CDS | 7574158 | 7574238 | 7574158 | ID=Msa0053150-mRNA-1:cds;Parent=Msa0053150-mRNA-1 |
| chr1_2 | CDS | 7574314 | 7574426 | 7574314 | ID=Msa0053150-mRNA-1:cds;Parent=Msa0053150-mRNA-1 |
| chr1_2 | CDS | 7574966 | 7575020 | 7574966 | ID=Msa0053150-mRNA-1:cds;Parent=Msa0053150-mRNA-1 |
| chr1_2 | three_prime_UTR | 7575021 | 7575481 | 7575021 | ID=Msa0053150-mRNA-1:three_prime_utr;Parent=Msa0053150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
