Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0098640 | XP_003589021.1 | 93.238 | 281 | 6 | 1 | 1 | 268 | 1 | 281 | 0.0 | 525 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0098640 | sp|Q7FRS8|CNBLA_ARATH | 61.479 | 257 | 76 | 2 | 9 | 265 | 20 | 253 | 2.47e-105 | 309 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0098640 | G7IB88 | 93.238 | 281 | 6 | 1 | 1 | 268 | 1 | 281 | 0.0 | 525 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005090 | Msa0098640 | 0.802353 | 5.839737e-49 | -8.615850e-47 |
| Msa0053150 | Msa0098640 | 0.838705 | 2.453425e-57 | -8.615850e-47 |
| Msa0098610 | Msa0098640 | 0.881683 | 1.957511e-70 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0098640 | MtrunA17_Chr1g0151621 | 90.672 | 268 | 6 | 1 | 1 | 268 | 1 | 249 | 3.19e-176 | 485 |
| Msa0098640 | MtrunA17_Chr8g0341941 | 55.253 | 257 | 92 | 3 | 12 | 264 | 14 | 251 | 1.09e-87 | 261 |
| Msa0098640 | MtrunA17_Chr5g0446931 | 65.574 | 183 | 63 | 0 | 86 | 268 | 43 | 225 | 1.21e-84 | 252 |
| Msa0098640 | MtrunA17_Chr4g0076551 | 66.667 | 180 | 60 | 0 | 86 | 265 | 44 | 223 | 1.27e-84 | 252 |
| Msa0098640 | MtrunA17_Chr3g0102821 | 66.667 | 180 | 60 | 0 | 86 | 265 | 43 | 222 | 1.60e-84 | 252 |
| Msa0098640 | MtrunA17_Chr4g0055421 | 54.585 | 229 | 80 | 2 | 36 | 264 | 2 | 206 | 3.32e-79 | 238 |
| Msa0098640 | MtrunA17_Chr2g0290771 | 61.326 | 181 | 70 | 0 | 85 | 265 | 7 | 187 | 9.57e-79 | 236 |
| Msa0098640 | MtrunA17_Chr8g0388331 | 61.667 | 180 | 69 | 0 | 86 | 265 | 28 | 207 | 1.72e-77 | 233 |
| Msa0098640 | MtrunA17_Chr8g0346911 | 58.011 | 181 | 76 | 0 | 86 | 266 | 51 | 231 | 1.90e-72 | 221 |
| Msa0098640 | MtrunA17_Chr2g0290751 | 60.000 | 165 | 66 | 0 | 86 | 250 | 46 | 210 | 2.63e-68 | 210 |
| Msa0098640 | MtrunA17_Chr2g0290781 | 55.556 | 180 | 80 | 0 | 86 | 265 | 48 | 227 | 1.37e-67 | 209 |
| Msa0098640 | MtrunA17_Chr2g0290761 | 59.394 | 165 | 67 | 0 | 86 | 250 | 46 | 210 | 6.81e-67 | 206 |
| Msa0098640 | MtrunA17_Chr4g0063121 | 44.633 | 177 | 78 | 1 | 88 | 264 | 7 | 163 | 2.14e-47 | 157 |
| Msa0098640 | MtrunA17_Chr3g0126801 | 66.667 | 96 | 32 | 0 | 170 | 265 | 6 | 101 | 1.91e-42 | 141 |
| Msa0098640 | MtrunA17_Chr3g0126811 | 67.073 | 82 | 27 | 0 | 86 | 167 | 29 | 110 | 2.63e-32 | 115 |
| Msa0098640 | MtrunA17_Chr5g0399921 | 60.920 | 87 | 34 | 0 | 87 | 173 | 28 | 114 | 7.88e-28 | 103 |
| Msa0098640 | MtrunA17_Chr8g0388321 | 43.697 | 119 | 42 | 2 | 78 | 187 | 62 | 164 | 4.75e-22 | 90.1 |
| Msa0098640 | MtrunA17_Chr8g0388311 | 49.296 | 71 | 36 | 0 | 190 | 260 | 1 | 71 | 1.44e-20 | 83.6 |
| Msa0098640 | MtrunA17_Chr5g0399931 | 55.556 | 72 | 32 | 0 | 190 | 261 | 1 | 72 | 7.58e-20 | 81.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0098640 | AT4G33000.2 | 60.920 | 261 | 79 | 2 | 5 | 265 | 6 | 243 | 1.36e-106 | 309 |
| Msa0098640 | AT4G33000.1 | 61.479 | 257 | 76 | 2 | 9 | 265 | 20 | 253 | 2.51e-106 | 309 |
| Msa0098640 | AT5G24270.5 | 68.927 | 177 | 55 | 0 | 85 | 261 | 6 | 182 | 1.04e-85 | 254 |
| Msa0098640 | AT5G24270.4 | 67.778 | 180 | 58 | 0 | 86 | 265 | 32 | 211 | 1.77e-84 | 252 |
| Msa0098640 | AT5G24270.1 | 67.778 | 180 | 58 | 0 | 86 | 265 | 32 | 211 | 1.77e-84 | 252 |
| Msa0098640 | AT5G24270.2 | 67.778 | 180 | 58 | 0 | 86 | 265 | 32 | 211 | 1.77e-84 | 252 |
| Msa0098640 | AT4G26570.1 | 66.111 | 180 | 61 | 0 | 86 | 265 | 43 | 222 | 2.93e-84 | 251 |
| Msa0098640 | AT5G55990.1 | 65.556 | 180 | 62 | 0 | 86 | 265 | 43 | 222 | 4.82e-82 | 246 |
| Msa0098640 | AT5G55990.2 | 65.556 | 180 | 62 | 0 | 86 | 265 | 43 | 222 | 4.82e-82 | 246 |
| Msa0098640 | AT4G26570.2 | 64.674 | 184 | 61 | 1 | 86 | 265 | 43 | 226 | 5.62e-82 | 246 |
| Msa0098640 | AT5G47100.1 | 64.444 | 180 | 64 | 0 | 86 | 265 | 28 | 207 | 2.23e-79 | 239 |
| Msa0098640 | AT1G64480.2 | 62.222 | 180 | 68 | 0 | 86 | 265 | 32 | 211 | 2.00e-78 | 236 |
| Msa0098640 | AT1G64480.3 | 62.222 | 180 | 68 | 0 | 86 | 265 | 32 | 211 | 2.00e-78 | 236 |
| Msa0098640 | AT1G64480.1 | 62.222 | 180 | 68 | 0 | 86 | 265 | 32 | 211 | 2.00e-78 | 236 |
| Msa0098640 | AT4G17615.4 | 53.478 | 230 | 83 | 2 | 36 | 265 | 2 | 207 | 1.32e-77 | 234 |
| Msa0098640 | AT4G17615.1 | 53.478 | 230 | 83 | 2 | 36 | 265 | 2 | 207 | 1.32e-77 | 234 |
| Msa0098640 | AT4G17615.5 | 53.478 | 230 | 83 | 2 | 36 | 265 | 2 | 207 | 1.32e-77 | 234 |
| Msa0098640 | AT4G33000.5 | 57.547 | 212 | 67 | 2 | 5 | 216 | 6 | 194 | 8.28e-76 | 230 |
| Msa0098640 | AT4G33000.4 | 58.095 | 210 | 65 | 2 | 5 | 214 | 6 | 192 | 1.01e-75 | 229 |
| Msa0098640 | AT4G33000.6 | 58.095 | 210 | 65 | 2 | 5 | 214 | 6 | 192 | 1.01e-75 | 229 |
| Msa0098640 | AT1G64480.4 | 62.651 | 166 | 62 | 0 | 86 | 251 | 32 | 197 | 7.65e-72 | 219 |
| Msa0098640 | AT4G17615.3 | 51.351 | 222 | 84 | 2 | 36 | 257 | 2 | 199 | 4.58e-69 | 214 |
| Msa0098640 | AT5G24270.3 | 64.286 | 154 | 55 | 0 | 108 | 261 | 7 | 160 | 3.29e-68 | 209 |
| Msa0098640 | AT4G16350.2 | 54.190 | 179 | 78 | 1 | 86 | 264 | 41 | 215 | 1.45e-64 | 201 |
| Msa0098640 | AT4G16350.1 | 54.190 | 179 | 78 | 1 | 86 | 264 | 41 | 215 | 1.45e-64 | 201 |
| Msa0098640 | AT4G17615.2 | 60.131 | 153 | 61 | 0 | 114 | 266 | 14 | 166 | 1.75e-62 | 194 |
| Msa0098640 | AT4G26560.1 | 48.936 | 188 | 83 | 2 | 91 | 265 | 23 | 210 | 4.62e-58 | 184 |
| Msa0098640 | AT4G01420.1 | 47.399 | 173 | 91 | 0 | 89 | 261 | 30 | 202 | 2.05e-52 | 170 |
| Msa0098640 | AT5G47100.2 | 63.281 | 128 | 47 | 0 | 86 | 213 | 28 | 155 | 7.90e-52 | 167 |
| Msa0098640 | AT4G33000.3 | 53.659 | 164 | 53 | 2 | 5 | 168 | 6 | 146 | 5.62e-50 | 162 |
| Msa0098640 | AT4G01420.2 | 47.239 | 163 | 86 | 0 | 89 | 251 | 30 | 192 | 2.25e-48 | 159 |
Find 62 sgRNAs with CRISPR-Local
Find 335 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCAAGTAAGCTTGTCTTTA+AGG | 0.023685 | 1_3:+4665561 | Msa0098640:three_prime_UTR |
| GTAGATTATGTTTCTATTTA+TGG | 0.038897 | 1_3:-4659739 | None:intergenic |
| CATAGCTGTCTTTGAGGTTT+TGG | 0.197445 | 1_3:+4660055 | Msa0098640:CDS |
| CATGAAAACTTGGTGGCTTT+AGG | 0.228877 | 1_3:-4665359 | None:intergenic |
| TAATCAAACCTATGAATTAT+AGG | 0.236206 | 1_3:-4665431 | None:intergenic |
| CTAGCCTCTATGATCGAAAT+TGG | 0.270825 | 1_3:-4659850 | None:intergenic |
| ATGAAAACTTGGTGGCTTTA+GGG | 0.270974 | 1_3:-4665358 | None:intergenic |
| GGATTGGTTATTGCTGTAAA+TGG | 0.273428 | 1_3:+4665268 | Msa0098640:three_prime_UTR |
| CGGTCACTCTTTATGTATAA+TGG | 0.295450 | 1_3:-4665493 | None:intergenic |
| CAGGATGTATCTAGAGGAAT+AGG | 0.310364 | 1_3:+4660002 | Msa0098640:intron |
| AAGAAGGGTTATGATGATTA+TGG | 0.321230 | 1_3:-4659817 | None:intergenic |
| CTCTATGACCTGAGACAAAC+AGG | 0.330842 | 1_3:+4663856 | Msa0098640:CDS |
| TGGCTTTAGGGTATGATTGC+AGG | 0.351457 | 1_3:-4665346 | None:intergenic |
| GCCACTCATAGCTGTCTTTG+AGG | 0.377672 | 1_3:+4660049 | Msa0098640:CDS |
| ATTTGTAGCCTATAATTCAT+AGG | 0.385610 | 1_3:+4665423 | Msa0098640:three_prime_UTR |
| GTCTATTTGAGGCAAATGAT+TGG | 0.407101 | 1_3:+4665247 | Msa0098640:three_prime_UTR |
| TTAAAGACAAGCTTACTTGC+GGG | 0.410464 | 1_3:-4665559 | None:intergenic |
| AGGATGTATCTAGAGGAATA+GGG | 0.424974 | 1_3:+4660003 | Msa0098640:intron |
| GAACAAAAGCATACAATCAT+TGG | 0.430568 | 1_3:-4665471 | None:intergenic |
| GCACTATTTCAAACCCCAAA+TGG | 0.446613 | 1_3:+4663287 | Msa0098640:CDS |
| GTAAAATCAGCAAAGAAGAT+TGG | 0.453764 | 1_3:+4664554 | Msa0098640:CDS |
| CAATAAACCCTGTTTGTCTC+AGG | 0.457501 | 1_3:-4663864 | None:intergenic |
| TTGGTTTCAGGTGAAGCAAA+TGG | 0.479980 | 1_3:+4664357 | Msa0098640:intron |
| TTGTTATTTGATAATGATGA+TGG | 0.481087 | 1_3:+4660396 | Msa0098640:CDS |
| AAACACCTACAGCATATTGT+TGG | 0.483900 | 1_3:-4660372 | None:intergenic |
| TAGGCTACAAATATTTCTGT+TGG | 0.488335 | 1_3:-4665412 | None:intergenic |
| ACATACAAAACATGAAAACT+TGG | 0.489189 | 1_3:-4665369 | None:intergenic |
| AATTGGTGATGATGATAAGA+AGG | 0.490633 | 1_3:-4659833 | None:intergenic |
| TTTGAGGCAAATGATTGGAT+TGG | 0.494507 | 1_3:+4665252 | Msa0098640:three_prime_UTR |
| TTTCACTAAAATTAAAGTGT+GGG | 0.502088 | 1_3:+4665656 | Msa0098640:three_prime_UTR |
| CATCCATTGGGGCATAAGGA+TGG | 0.505415 | 1_3:-4663716 | None:intergenic |
| TACATCTGGTTTCTTGAGCA+AGG | 0.512152 | 1_3:-4660163 | None:intergenic |
| TTTCCATCCTTATGCCCCAA+TGG | 0.516605 | 1_3:+4663713 | Msa0098640:CDS |
| AGTAGCTCTGTAATTGATGA+TGG | 0.519726 | 1_3:+4663120 | Msa0098640:CDS |
| ATTTCACTAAAATTAAAGTG+TGG | 0.529768 | 1_3:+4665655 | Msa0098640:three_prime_UTR |
| TACAAAACATGAAAACTTGG+TGG | 0.533813 | 1_3:-4665366 | None:intergenic |
| GTCATGTTCTTCAAGAGAGA+CGG | 0.538874 | 1_3:-4664598 | None:intergenic |
| ACTACTGAACTCACTTCCTC+TGG | 0.539821 | 1_3:-4663889 | None:intergenic |
| TAAATAAAGTTAAATACACT+TGG | 0.562418 | 1_3:-4665587 | None:intergenic |
| TCTTGAAGCTATTGTTGACA+AGG | 0.562525 | 1_3:+4664426 | Msa0098640:CDS |
| GCTGTAAATGGTAACAACAT+TGG | 0.565233 | 1_3:+4665280 | Msa0098640:three_prime_UTR |
| ATTGGTGATGATGATAAGAA+GGG | 0.577485 | 1_3:-4659832 | None:intergenic |
| TACAGGGGAATGAGTAGGCA+TGG | 0.577752 | 1_3:-4659885 | None:intergenic |
| TCTGATTTGAAAATAAAACT+AGG | 0.584623 | 1_3:-4665194 | None:intergenic |
| AATTTGCTGACAAACAATCA+TGG | 0.588998 | 1_3:+4665304 | Msa0098640:three_prime_UTR |
| AAAGTTACAGGGGAATGAGT+AGG | 0.590893 | 1_3:-4659890 | None:intergenic |
| AAACATAATCTACAAAGGAA+AGG | 0.592146 | 1_3:+4659749 | Msa0098640:five_prime_UTR |
| CTTAAAGACAAGCTTACTTG+CGG | 0.597953 | 1_3:-4665560 | None:intergenic |
| ATCACCAATTTCGATCATAG+AGG | 0.600338 | 1_3:+4659846 | Msa0098640:five_prime_UTR |
| GGATGTATCTAGAGGAATAG+GGG | 0.600419 | 1_3:+4660004 | Msa0098640:intron |
| TATATCCAACAATATGCTGT+AGG | 0.601683 | 1_3:+4660367 | Msa0098640:CDS |
| ATTCCACAGGATGTATCTAG+AGG | 0.601973 | 1_3:+4659996 | Msa0098640:intron |
| GATGGAAAACACTGAGCGCG+TGG | 0.605651 | 1_3:-4663698 | None:intergenic |
| GACGTTGATCAAGACAATGA+TGG | 0.607782 | 1_3:+4664532 | Msa0098640:CDS |
| AACAGGGTTTATTGAGCCAG+AGG | 0.608476 | 1_3:+4663873 | Msa0098640:CDS |
| AATAGAAACATAATCTACAA+AGG | 0.616979 | 1_3:+4659744 | Msa0098640:five_prime_UTR |
| ATCATTGTCTTGATCAACGT+CGG | 0.634735 | 1_3:-4664530 | None:intergenic |
| TGATGATGGCTTGATTCACA+AGG | 0.635403 | 1_3:+4663134 | Msa0098640:CDS |
| ACCTCAAAGACAGCTATGAG+TGG | 0.672289 | 1_3:-4660050 | None:intergenic |
| AATAAAACTAGGAAACGCAG+TGG | 0.710414 | 1_3:-4665183 | None:intergenic |
| TCTATGACCTGAGACAAACA+GGG | 0.757678 | 1_3:+4663857 | Msa0098640:CDS |
| TTCACTTGAAGATGTCACTG+CGG | 0.763080 | 1_3:-4665513 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGAAAATGTAATAGAAA+TGG | - | chr1_3:4662778-4662797 | None:intergenic | 15.0% |
| !!! | ATTTTTTTTCTTTCAATTGT+AGG | + | chr1_3:4663250-4663269 | Msa0098640:intron | 15.0% |
| !!! | ATTTTTGATGAAAAAAGAAA+CGG | + | chr1_3:4663651-4663670 | Msa0098640:CDS | 15.0% |
| !!! | TAAAATTTTAAAGACTTTAG+AGG | - | chr1_3:4665126-4665145 | None:intergenic | 15.0% |
| !! | TAAATAAAGTTAAATACACT+TGG | - | chr1_3:4665590-4665609 | None:intergenic | 15.0% |
| !!! | GTAGATTATGTTTCTATTTA+TGG | - | chr1_3:4659742-4659761 | None:intergenic | 20.0% |
| !! | AATAGAAACATAATCTACAA+AGG | + | chr1_3:4659744-4659763 | Msa0098640:five_prime_UTR | 20.0% |
| !! | AATGAATTAGAAAAATGAGT+AGG | - | chr1_3:4659923-4659942 | None:intergenic | 20.0% |
| !! | AATGGAAATCATTGAATTAA+GGG | - | chr1_3:4660207-4660226 | None:intergenic | 20.0% |
| !! | AAATGGAAATCATTGAATTA+AGG | - | chr1_3:4660208-4660227 | None:intergenic | 20.0% |
| !! | AAAGTGGAAAATAATTGAAA+TGG | - | chr1_3:4660225-4660244 | None:intergenic | 20.0% |
| !!! | ATTTCAATTATTTTCCACTT+TGG | + | chr1_3:4660224-4660243 | Msa0098640:intron | 20.0% |
| !!! | TTGTTATTTGATAATGATGA+TGG | + | chr1_3:4660396-4660415 | Msa0098640:CDS | 20.0% |
| !! | AACAATAACAAATTGTTCAA+CGG | - | chr1_3:4661805-4661824 | None:intergenic | 20.0% |
| !! | TGTAAGAATAAGAAAAACAA+AGG | - | chr1_3:4661929-4661948 | None:intergenic | 20.0% |
| !!! | AGAAAACTGATTTTGTTTTA+TGG | + | chr1_3:4661949-4661968 | Msa0098640:intron | 20.0% |
| !! | TATAATCTATTTGAAGATTC+TGG | - | chr1_3:4662031-4662050 | None:intergenic | 20.0% |
| !!! | ATAATTTCTGGTTCTATTAT+CGG | - | chr1_3:4662222-4662241 | None:intergenic | 20.0% |
| !!! | TCTATTACATTTTCAAAACT+AGG | + | chr1_3:4662780-4662799 | Msa0098640:intron | 20.0% |
| !!! | TTAAGTTTGTTAGTTTAGTT+AGG | - | chr1_3:4662900-4662919 | None:intergenic | 20.0% |
| !! | TATCATTAGAGATATATTGT+TGG | - | chr1_3:4662966-4662985 | None:intergenic | 20.0% |
| !! | TACAATTTCATCTACAATAT+AGG | - | chr1_3:4663385-4663404 | None:intergenic | 20.0% |
| !! | TAGATGAAATTGTATTGTAA+TGG | + | chr1_3:4663391-4663410 | Msa0098640:intron | 20.0% |
| !! | GTATATTTGAACATAAATCA+TGG | - | chr1_3:4664084-4664103 | None:intergenic | 20.0% |
| !! | AAATATACACTTGAAAATTG+TGG | + | chr1_3:4664096-4664115 | Msa0098640:intron | 20.0% |
| !! | ATTGGTTAATGAAAATAACA+AGG | - | chr1_3:4664181-4664200 | None:intergenic | 20.0% |
| !!! | TTATTTTCATTAACCAATCA+CGG | + | chr1_3:4664183-4664202 | Msa0098640:intron | 20.0% |
| !!! | TCAAAATTGTTGTTGAAATT+TGG | + | chr1_3:4664242-4664261 | Msa0098640:intron | 20.0% |
| !!! | TATTAAGTGTTTGATTTACT+TGG | + | chr1_3:4664338-4664357 | Msa0098640:intron | 20.0% |
| !!! | ATTTTTGCATACTTCAAATA+AGG | - | chr1_3:4664628-4664647 | None:intergenic | 20.0% |
| !! | TATCAATGATTGATATTGTA+TGG | + | chr1_3:4665014-4665033 | Msa0098640:intron | 20.0% |
| !! | TATATTGAAATGTTAACCAT+TGG | + | chr1_3:4665058-4665077 | Msa0098640:intron | 20.0% |
| !!! | TCTGATTTGAAAATAAAACT+AGG | - | chr1_3:4665197-4665216 | None:intergenic | 20.0% |
| !!! | TAGTTTTATTTTCAAATCAG+AGG | + | chr1_3:4665196-4665215 | Msa0098640:CDS | 20.0% |
| !!! | AATGTTTTATTGTCTATTTG+AGG | + | chr1_3:4665236-4665255 | Msa0098640:three_prime_UTR | 20.0% |
| !! | TAATCAAACCTATGAATTAT+AGG | - | chr1_3:4665434-4665453 | None:intergenic | 20.0% |
| !! | ATTTCACTAAAATTAAAGTG+TGG | + | chr1_3:4665655-4665674 | Msa0098640:three_prime_UTR | 20.0% |
| !! | TTTCACTAAAATTAAAGTGT+GGG | + | chr1_3:4665656-4665675 | Msa0098640:three_prime_UTR | 20.0% |
| ! | AAACATAATCTACAAAGGAA+AGG | + | chr1_3:4659749-4659768 | Msa0098640:five_prime_UTR | 25.0% |
| ! | AATTAGAAAAATGAGTAGGT+AGG | - | chr1_3:4659919-4659938 | None:intergenic | 25.0% |
| ! | ATGGAAATCATTGAATTAAG+GGG | - | chr1_3:4660206-4660225 | None:intergenic | 25.0% |
| !! | TTTTACTGAGGATGAAAAAA+TGG | - | chr1_3:4660286-4660305 | None:intergenic | 25.0% |
| !! | CATTGTTTACTATTTTACTG+AGG | - | chr1_3:4660298-4660317 | None:intergenic | 25.0% |
| ! | CTCAGTAAAATAGTAAACAA+TGG | + | chr1_3:4660296-4660315 | Msa0098640:intron | 25.0% |
| !! | TGTTTAAAACTTTATGCAAG+TGG | + | chr1_3:4660541-4660560 | Msa0098640:intron | 25.0% |
| !! | GTTTAAAACTTTATGCAAGT+GGG | + | chr1_3:4660542-4660561 | Msa0098640:intron | 25.0% |
| !! | TTTAAAACTTTATGCAAGTG+GGG | + | chr1_3:4660543-4660562 | Msa0098640:intron | 25.0% |
| ! | AGAGAAAATAGTAATTGAAG+AGG | - | chr1_3:4660683-4660702 | None:intergenic | 25.0% |
| !! | TCCCAAAATTACATTTTAGA+GGG | + | chr1_3:4660702-4660721 | Msa0098640:intron | 25.0% |
| !!! | CTTGTCCTATAGTTTTATAT+GGG | + | chr1_3:4660807-4660826 | Msa0098640:intron | 25.0% |
| ! | TGACATTCATTATAATGTTG+AGG | + | chr1_3:4661767-4661786 | Msa0098640:intron | 25.0% |
| ! | GACATTCATTATAATGTTGA+GGG | + | chr1_3:4661768-4661787 | Msa0098640:intron | 25.0% |
| !! | TGGTAACTAACTTTAAGAAA+TGG | - | chr1_3:4662011-4662030 | None:intergenic | 25.0% |
| ! | TCAAATTATAGAGAATTGCT+TGG | - | chr1_3:4662151-4662170 | None:intergenic | 25.0% |
| !!! | TTGAAACTTAGAAGTATCTT+TGG | - | chr1_3:4662674-4662693 | None:intergenic | 25.0% |
| ! | AAATAAATCAGTGACAGAAA+TGG | - | chr1_3:4662719-4662738 | None:intergenic | 25.0% |
| !! | TTACATTTTCAAAACTAGGT+CGG | + | chr1_3:4662784-4662803 | Msa0098640:intron | 25.0% |
| ! | ACTTTGATTAACAAAAGCTT+TGG | + | chr1_3:4663014-4663033 | Msa0098640:intron | 25.0% |
| !!! | AAAGCTTTGGTTTGAATAAT+TGG | + | chr1_3:4663027-4663046 | Msa0098640:intron | 25.0% |
| !!! | TTTTTTCTTTCAATTGTAGG+TGG | + | chr1_3:4663253-4663272 | Msa0098640:intron | 25.0% |
| !! | AAAAAGATTTTCTCCATTTG+GGG | - | chr1_3:4663303-4663322 | None:intergenic | 25.0% |
| !! | GAAAAAGATTTTCTCCATTT+GGG | - | chr1_3:4663304-4663323 | None:intergenic | 25.0% |
| !! | AGAAAAAGATTTTCTCCATT+TGG | - | chr1_3:4663305-4663324 | None:intergenic | 25.0% |
| !! | AAATGGAGAAAATCTTTTTC+TGG | + | chr1_3:4663304-4663323 | Msa0098640:CDS | 25.0% |
| ! | GCATTATAATATGCTTTGAT+CGG | + | chr1_3:4663509-4663528 | Msa0098640:intron | 25.0% |
| ! | TTAACACATTAGTACATTCA+TGG | - | chr1_3:4663602-4663621 | None:intergenic | 25.0% |
| ! | AAATTCCATGTTTCTTCTAT+AGG | + | chr1_3:4663620-4663639 | Msa0098640:intron | 25.0% |
| ! | AAAAACCTATAGAAGAAACA+TGG | - | chr1_3:4663628-4663647 | None:intergenic | 25.0% |
| !!! | AGTCTATTTTTTCATCCATT+GGG | - | chr1_3:4663731-4663750 | None:intergenic | 25.0% |
| ! | AACTGCAAAATTATCATCAT+GGG | - | chr1_3:4663827-4663846 | None:intergenic | 25.0% |
| ! | AGGTTAAGGAATATAATTTC+AGG | + | chr1_3:4663987-4664006 | Msa0098640:intron | 25.0% |
| ! | CACACAATTTAGACAATTAA+TGG | - | chr1_3:4664038-4664057 | None:intergenic | 25.0% |
| !!! | AATGGTTATAGCTATTTTGA+TGG | + | chr1_3:4664375-4664394 | Msa0098640:CDS | 25.0% |
| ! | CAATGAGTTATATTGTTTAC+AGG | + | chr1_3:4664481-4664500 | Msa0098640:intron | 25.0% |
| ! | AATTCCTTACTTTCTTACTT+TGG | + | chr1_3:4664645-4664664 | Msa0098640:intron | 25.0% |
| ! | ATAAGTGTTTATGCTATAAG+CGG | - | chr1_3:4664730-4664749 | None:intergenic | 25.0% |
| ! | TCAGAATAGCTTATGAAAAT+AGG | - | chr1_3:4664829-4664848 | None:intergenic | 25.0% |
| ! | AAATAAGCCGAAACAATTTA+TGG | + | chr1_3:4664860-4664879 | Msa0098640:intron | 25.0% |
| ! | ACATACAAAACATGAAAACT+TGG | - | chr1_3:4665372-4665391 | None:intergenic | 25.0% |
| !! | TTCATGTTTTGTATGTTTGA+AGG | + | chr1_3:4665376-4665395 | Msa0098640:three_prime_UTR | 25.0% |
| ! | ATTTGTAGCCTATAATTCAT+AGG | + | chr1_3:4665423-4665442 | Msa0098640:three_prime_UTR | 25.0% |
| AAGAAGGGTTATGATGATTA+TGG | - | chr1_3:4659820-4659839 | None:intergenic | 30.0% | |
| !! | ATTGGTGATGATGATAAGAA+GGG | - | chr1_3:4659835-4659854 | None:intergenic | 30.0% |
| !! | AATTGGTGATGATGATAAGA+AGG | - | chr1_3:4659836-4659855 | None:intergenic | 30.0% |
| TAGGTAGGTAAAAAGTTACA+GGG | - | chr1_3:4659904-4659923 | None:intergenic | 30.0% | |
| !!! | TACATGTTTTTTGATTCCAC+AGG | + | chr1_3:4659983-4660002 | Msa0098640:intron | 30.0% |
| !!! | GATTTTTGAGTGTGAAAACT+GGG | - | chr1_3:4660116-4660135 | None:intergenic | 30.0% |
| !!! | AGATTTTTGAGTGTGAAAAC+TGG | - | chr1_3:4660117-4660136 | None:intergenic | 30.0% |
| ATGAAATGAGTAGTTACATC+TGG | - | chr1_3:4660180-4660199 | None:intergenic | 30.0% | |
| TGGAAATCATTGAATTAAGG+GGG | - | chr1_3:4660205-4660224 | None:intergenic | 30.0% | |
| GTAAAATAGTAAACAATGGC+AGG | + | chr1_3:4660300-4660319 | Msa0098640:intron | 30.0% | |
| TATATCCAACAATATGCTGT+AGG | + | chr1_3:4660367-4660386 | Msa0098640:CDS | 30.0% | |
| !! | ATAATGATGATGGTATGTAC+AGG | + | chr1_3:4660406-4660425 | Msa0098640:intron | 30.0% |
| ACCATAATAATTGATCACGT+TGG | + | chr1_3:4660451-4660470 | Msa0098640:intron | 30.0% | |
| TCCAACGTGATCAATTATTA+TGG | - | chr1_3:4660455-4660474 | None:intergenic | 30.0% | |
| TTAATAGACCATATCAAAGC+TGG | - | chr1_3:4660576-4660595 | None:intergenic | 30.0% | |
| TACAATAAAGTTGAGCAGTT+AGG | - | chr1_3:4660604-4660623 | None:intergenic | 30.0% | |
| ! | CTCCCAAAATTACATTTTAG+AGG | + | chr1_3:4660701-4660720 | Msa0098640:intron | 30.0% |
| !!! | CCCCTCTAAAATGTAATTTT+GGG | - | chr1_3:4660706-4660725 | None:intergenic | 30.0% |
| !! | CCCAAAATTACATTTTAGAG+GGG | + | chr1_3:4660703-4660722 | Msa0098640:intron | 30.0% |
| !!! | ACCCCTCTAAAATGTAATTT+TGG | - | chr1_3:4660707-4660726 | None:intergenic | 30.0% |
| TACAAATCAAGGCCTTTAAA+GGG | - | chr1_3:4660785-4660804 | None:intergenic | 30.0% | |
| TTACAAATCAAGGCCTTTAA+AGG | - | chr1_3:4660786-4660805 | None:intergenic | 30.0% | |
| !!! | GCTTGTCCTATAGTTTTATA+TGG | + | chr1_3:4660806-4660825 | Msa0098640:intron | 30.0% |
| !!! | TCCTATAGTTTTATATGGGA+TGG | + | chr1_3:4660811-4660830 | Msa0098640:intron | 30.0% |
| TCCATCCCATATAAAACTAT+AGG | - | chr1_3:4660815-4660834 | None:intergenic | 30.0% | |
| GAAATGAGGTTATATCATGT+GGG | - | chr1_3:4660897-4660916 | None:intergenic | 30.0% | |
| AGGGTTATATTGTATATTGC+TGG | - | chr1_3:4660936-4660955 | None:intergenic | 30.0% | |
| ACAATATAACCCTTGTCTTT+AGG | + | chr1_3:4660943-4660962 | Msa0098640:intron | 30.0% | |
| AATCGAAGAAGAGATTTAAC+GGG | - | chr1_3:4661087-4661106 | None:intergenic | 30.0% | |
| GAATCGAAGAAGAGATTTAA+CGG | - | chr1_3:4661088-4661107 | None:intergenic | 30.0% | |
| TTAAATCTCTTCTTCGATTC+AGG | + | chr1_3:4661088-4661107 | Msa0098640:intron | 30.0% | |
| TGTTGTCCAAATGATAGTAA+GGG | - | chr1_3:4661329-4661348 | None:intergenic | 30.0% | |
| TTGTTGTCCAAATGATAGTA+AGG | - | chr1_3:4661330-4661349 | None:intergenic | 30.0% | |
| CAATTCAACTGACACTTATA+AGG | + | chr1_3:4661560-4661579 | Msa0098640:intron | 30.0% | |
| ATTGTGAGAATTCTAAGTGT+GGG | + | chr1_3:4661621-4661640 | Msa0098640:intron | 30.0% | |
| TGTTATTGTTTCACTTGATC+TGG | + | chr1_3:4661815-4661834 | Msa0098640:intron | 30.0% | |
| GTTATTGTTTCACTTGATCT+GGG | + | chr1_3:4661816-4661835 | Msa0098640:intron | 30.0% | |
| AACCAGAAATTATATACGCT+GGG | + | chr1_3:4662229-4662248 | Msa0098640:intron | 30.0% | |
| ! | AATTCAGAAAAAAGTGCACT+TGG | - | chr1_3:4662622-4662641 | None:intergenic | 30.0% |
| ! | ATTTCGTTTTCCTCTTCTTT+TGG | + | chr1_3:4662639-4662658 | Msa0098640:intron | 30.0% |
| TCACAAGGTAAGATCATATT+TGG | + | chr1_3:4663149-4663168 | Msa0098640:intron | 30.0% | |
| ! | TGAATGCAAGTTTTTCACAT+AGG | + | chr1_3:4663182-4663201 | Msa0098640:intron | 30.0% |
| ! | GAATGCAAGTTTTTCACATA+GGG | + | chr1_3:4663183-4663202 | Msa0098640:intron | 30.0% |
| !!! | GTTCCTATATTTTTTAGCCA+TGG | + | chr1_3:4663339-4663358 | Msa0098640:intron | 30.0% |
| ATGCCATGGCTAAAAAATAT+AGG | - | chr1_3:4663345-4663364 | None:intergenic | 30.0% | |
| TAACATGAAGAAATATGCCA+TGG | - | chr1_3:4663359-4663378 | None:intergenic | 30.0% | |
| !!! | GTCTATTTTTTCATCCATTG+GGG | - | chr1_3:4663730-4663749 | None:intergenic | 30.0% |
| !!! | CAGTCTATTTTTTCATCCAT+TGG | - | chr1_3:4663732-4663751 | None:intergenic | 30.0% |
| CAACTGCAAAATTATCATCA+TGG | - | chr1_3:4663828-4663847 | None:intergenic | 30.0% | |
| !! | GGTTAATTTTGGCAAGTATA+AGG | + | chr1_3:4663967-4663986 | Msa0098640:intron | 30.0% |
| ! | TTTTGGCAAGTATAAGGTTA+AGG | + | chr1_3:4663973-4663992 | Msa0098640:intron | 30.0% |
| ! | CTGTGTTTAATTGTGTTGAT+TGG | + | chr1_3:4664135-4664154 | Msa0098640:intron | 30.0% |
| ! | TGTTTGATTTACTTGGTTTC+AGG | + | chr1_3:4664345-4664364 | Msa0098640:intron | 30.0% |
| GTAAAATCAGCAAAGAAGAT+TGG | + | chr1_3:4664554-4664573 | Msa0098640:CDS | 30.0% | |
| TGACATGCCATAAATTGTTT+CGG | - | chr1_3:4664870-4664889 | None:intergenic | 30.0% | |
| TCAGTAGAAAAGCTCAAATA+AGG | + | chr1_3:4664938-4664957 | Msa0098640:intron | 30.0% | |
| TAATGAAGTGAGAAAACCAA+TGG | - | chr1_3:4665077-4665096 | None:intergenic | 30.0% | |
| !! | TTTATTTTCAAATCAGAGGC+TGG | + | chr1_3:4665200-4665219 | Msa0098640:CDS | 30.0% |
| !! | AATTTGCTGACAAACAATCA+TGG | + | chr1_3:4665304-4665323 | Msa0098640:three_prime_UTR | 30.0% |
| TACAAAACATGAAAACTTGG+TGG | - | chr1_3:4665369-4665388 | None:intergenic | 30.0% | |
| ! | TAGGCTACAAATATTTCTGT+TGG | - | chr1_3:4665415-4665434 | None:intergenic | 30.0% |
| ! | GAACAAAAGCATACAATCAT+TGG | - | chr1_3:4665474-4665493 | None:intergenic | 30.0% |
| ATCACCAATTTCGATCATAG+AGG | + | chr1_3:4659846-4659865 | Msa0098640:five_prime_UTR | 35.0% | |
| AGGTAGGTAAAAAGTTACAG+GGG | - | chr1_3:4659903-4659922 | None:intergenic | 35.0% | |
| GTAGGTAGGTAAAAAGTTAC+AGG | - | chr1_3:4659905-4659924 | None:intergenic | 35.0% | |
| AGGATGTATCTAGAGGAATA+GGG | + | chr1_3:4660003-4660022 | Msa0098640:intron | 35.0% | |
| GGAAATCATTGAATTAAGGG+GGG | - | chr1_3:4660204-4660223 | None:intergenic | 35.0% | |
| !! | TTGTATTGATTGAGCCAAAG+TGG | - | chr1_3:4660241-4660260 | None:intergenic | 35.0% |
| AAACACCTACAGCATATTGT+TGG | - | chr1_3:4660375-4660394 | None:intergenic | 35.0% | |
| GAGTTAATGTACCCCTTTAA+AGG | + | chr1_3:4660770-4660789 | Msa0098640:intron | 35.0% | |
| ! | ACAAATCAAGGCCTTTAAAG+GGG | - | chr1_3:4660784-4660803 | None:intergenic | 35.0% |
| TAGGACAAGCTTACAAATCA+AGG | - | chr1_3:4660796-4660815 | None:intergenic | 35.0% | |
| GGAAATGAGGTTATATCATG+TGG | - | chr1_3:4660898-4660917 | None:intergenic | 35.0% | |
| TGGTTGAAACCTAAAGACAA+GGG | - | chr1_3:4660955-4660974 | None:intergenic | 35.0% | |
| ATCGAAGAAGAGATTTAACG+GGG | - | chr1_3:4661086-4661105 | None:intergenic | 35.0% | |
| ACTAAGGTGTAGTTTCACAA+AGG | - | chr1_3:4661154-4661173 | None:intergenic | 35.0% | |
| ATTCTCAATTAAATGGCGCA+TGG | - | chr1_3:4661283-4661302 | None:intergenic | 35.0% | |
| ATGCCGGATTCTCAATTAAA+TGG | - | chr1_3:4661290-4661309 | None:intergenic | 35.0% | |
| TGATAGCTGAAAGTTTCAAG+TGG | - | chr1_3:4661510-4661529 | None:intergenic | 35.0% | |
| CTTGAAACTTTCAGCTATCA+TGG | + | chr1_3:4661510-4661529 | Msa0098640:intron | 35.0% | |
| ! | GGCAATTTCAACTTCAAGTT+TGG | + | chr1_3:4661531-4661550 | Msa0098640:intron | 35.0% |
| TTCAACTGACACTTATAAGG+TGG | + | chr1_3:4661563-4661582 | Msa0098640:intron | 35.0% | |
| CATTGTGAGAATTCTAAGTG+TGG | + | chr1_3:4661620-4661639 | Msa0098640:intron | 35.0% | |
| TCCTATTGTTCCTCTTCATT+TGG | + | chr1_3:4661674-4661693 | Msa0098640:intron | 35.0% | |
| TCCAAATGAAGAGGAACAAT+AGG | - | chr1_3:4661678-4661697 | None:intergenic | 35.0% | |
| TTCCTCTTCATTTGGACTTT+GGG | + | chr1_3:4661682-4661701 | Msa0098640:intron | 35.0% | |
| ! | TGGACTTTGGGGAATATTAT+TGG | + | chr1_3:4661694-4661713 | Msa0098640:intron | 35.0% |
| TGGGGAATATTATTGGAATG+CGG | + | chr1_3:4661701-4661720 | Msa0098640:intron | 35.0% | |
| TATGGCAGATGATGAAATTC+AGG | + | chr1_3:4661967-4661986 | Msa0098640:intron | 35.0% | |
| ATGGCAGATGATGAAATTCA+GGG | + | chr1_3:4661968-4661987 | Msa0098640:intron | 35.0% | |
| GAACCAGAAATTATATACGC+TGG | + | chr1_3:4662228-4662247 | Msa0098640:intron | 35.0% | |
| AACCCAGCGTATATAATTTC+TGG | - | chr1_3:4662234-4662253 | None:intergenic | 35.0% | |
| TAAACTTTCAACGTAAACCC+TGG | - | chr1_3:4662261-4662280 | None:intergenic | 35.0% | |
| CTTGAGGATAAGGTTTCAAA+AGG | - | chr1_3:4662291-4662310 | None:intergenic | 35.0% | |
| !!! | CTTTTGAAACCTTATCCTCA+AGG | + | chr1_3:4662289-4662308 | Msa0098640:intron | 35.0% |
| ! | CCTTCTTTTATGAGTGATAG+TGG | - | chr1_3:4662516-4662535 | None:intergenic | 35.0% |
| CCACTATCACTCATAAAAGA+AGG | + | chr1_3:4662513-4662532 | Msa0098640:intron | 35.0% | |
| AATGAAAACTCAAGTCCACA+AGG | - | chr1_3:4662562-4662581 | None:intergenic | 35.0% | |
| !!! | TTTTCCTCTTCTTTTGGTTC+TGG | + | chr1_3:4662645-4662664 | Msa0098640:intron | 35.0% |
| ! | TGCACAACTTTTGTATGACA+AGG | + | chr1_3:4662746-4662765 | Msa0098640:intron | 35.0% |
| ! | GCACAACTTTTGTATGACAA+GGG | + | chr1_3:4662747-4662766 | Msa0098640:intron | 35.0% |
| ! | CACAACTTTTGTATGACAAG+GGG | + | chr1_3:4662748-4662767 | Msa0098640:intron | 35.0% |
| ! | ACAACTTTTGTATGACAAGG+GGG | + | chr1_3:4662749-4662768 | Msa0098640:intron | 35.0% |
| GGAGTTATGTAGTTACAAGT+TGG | - | chr1_3:4662945-4662964 | None:intergenic | 35.0% | |
| ! | AGTAGCTCTGTAATTGATGA+TGG | + | chr1_3:4663120-4663139 | Msa0098640:CDS | 35.0% |
| !!! | CAAAACAGTTGCTGATTTTG+AGG | + | chr1_3:4663468-4663487 | Msa0098640:intron | 35.0% |
| CATCATTGGAAGAATCACAA+TGG | - | chr1_3:4663579-4663598 | None:intergenic | 35.0% | |
| TAGTACATTCATGGCATCAT+TGG | - | chr1_3:4663593-4663612 | None:intergenic | 35.0% | |
| ! | TTCAGTTGAAGACAGTCTTT+TGG | + | chr1_3:4663756-4663775 | Msa0098640:intron | 35.0% |
| ACATCAAATTTCGACAACAG+TGG | + | chr1_3:4663946-4663965 | Msa0098640:intron | 35.0% | |
| ! | TCGACAACAGTGGTTAATTT+TGG | + | chr1_3:4663956-4663975 | Msa0098640:intron | 35.0% |
| AGTTAATTACGTTCCGTGAT+TGG | - | chr1_3:4664199-4664218 | None:intergenic | 35.0% | |
| TTATAATGCCTAAAGCGATG+CGG | - | chr1_3:4664308-4664327 | None:intergenic | 35.0% | |
| TCTTGAAGCTATTGTTGACA+AGG | + | chr1_3:4664426-4664445 | Msa0098640:CDS | 35.0% | |
| ATCATTGTCTTGATCAACGT+CGG | - | chr1_3:4664533-4664552 | None:intergenic | 35.0% | |
| CAGACCAAAGTAAGAAAGTA+AGG | - | chr1_3:4664652-4664671 | None:intergenic | 35.0% | |
| TGTATGCGAATTGTTCACTT+TGG | - | chr1_3:4664682-4664701 | None:intergenic | 35.0% | |
| ACAATTCGCATACAAACTTG+TGG | + | chr1_3:4664688-4664707 | Msa0098640:intron | 35.0% | |
| ! | GGTTTTCTCACTTCATTAAG+AGG | + | chr1_3:4665079-4665098 | Msa0098640:intron | 35.0% |
| AATAAAACTAGGAAACGCAG+TGG | - | chr1_3:4665186-4665205 | None:intergenic | 35.0% | |
| ! | GTCTATTTGAGGCAAATGAT+TGG | + | chr1_3:4665247-4665266 | Msa0098640:three_prime_UTR | 35.0% |
| ! | TTTGAGGCAAATGATTGGAT+TGG | + | chr1_3:4665252-4665271 | Msa0098640:three_prime_UTR | 35.0% |
| !! | GGATTGGTTATTGCTGTAAA+TGG | + | chr1_3:4665268-4665287 | Msa0098640:three_prime_UTR | 35.0% |
| GCTGTAAATGGTAACAACAT+TGG | + | chr1_3:4665280-4665299 | Msa0098640:three_prime_UTR | 35.0% | |
| ! | ATGAAAACTTGGTGGCTTTA+GGG | - | chr1_3:4665361-4665380 | None:intergenic | 35.0% |
| CGGTCACTCTTTATGTATAA+TGG | - | chr1_3:4665496-4665515 | None:intergenic | 35.0% | |
| TTAAAGACAAGCTTACTTGC+GGG | - | chr1_3:4665562-4665581 | None:intergenic | 35.0% | |
| CTTAAAGACAAGCTTACTTG+CGG | - | chr1_3:4665563-4665582 | None:intergenic | 35.0% | |
| CTAGCCTCTATGATCGAAAT+TGG | - | chr1_3:4659853-4659872 | None:intergenic | 40.0% | |
| AAAGTTACAGGGGAATGAGT+AGG | - | chr1_3:4659893-4659912 | None:intergenic | 40.0% | |
| ATTCCACAGGATGTATCTAG+AGG | + | chr1_3:4659996-4660015 | Msa0098640:intron | 40.0% | |
| ATTCCTCTAGATACATCCTG+TGG | - | chr1_3:4660002-4660021 | None:intergenic | 40.0% | |
| CAGGATGTATCTAGAGGAAT+AGG | + | chr1_3:4660002-4660021 | Msa0098640:intron | 40.0% | |
| GGATGTATCTAGAGGAATAG+GGG | + | chr1_3:4660004-4660023 | Msa0098640:intron | 40.0% | |
| !!! | CATAGCTGTCTTTGAGGTTT+TGG | + | chr1_3:4660055-4660074 | Msa0098640:CDS | 40.0% |
| ! | TACATCTGGTTTCTTGAGCA+AGG | - | chr1_3:4660166-4660185 | None:intergenic | 40.0% |
| ! | GTTTGAAGCCAGCTTTGATA+TGG | + | chr1_3:4660565-4660584 | Msa0098640:intron | 40.0% |
| ATATGGGATGGAAGCTGAAA+TGG | + | chr1_3:4660823-4660842 | Msa0098640:intron | 40.0% | |
| CAAATCTGTTGTGGGAAATG+AGG | - | chr1_3:4660911-4660930 | None:intergenic | 40.0% | |
| GTGGTTGAAACCTAAAGACA+AGG | - | chr1_3:4660956-4660975 | None:intergenic | 40.0% | |
| !! | TTTTCAATGCTGTGTCGTTG+TGG | - | chr1_3:4660975-4660994 | None:intergenic | 40.0% |
| GTTTCACAAAGGCTTGATCA+GGG | - | chr1_3:4661143-4661162 | None:intergenic | 40.0% | |
| AGTTTCACAAAGGCTTGATC+AGG | - | chr1_3:4661144-4661163 | None:intergenic | 40.0% | |
| ! | TTCGTGTTGCTGATCTACTA+AGG | - | chr1_3:4661170-4661189 | None:intergenic | 40.0% |
| ATTAAATGGCGCATGGAGTA+AGG | - | chr1_3:4661276-4661295 | None:intergenic | 40.0% | |
| GCGCCATTTAATTGAGAATC+CGG | + | chr1_3:4661284-4661303 | Msa0098640:intron | 40.0% | |
| ATAGTAAGGGTCGATGGAAA+AGG | - | chr1_3:4661316-4661335 | None:intergenic | 40.0% | |
| CAAATGATAGTAAGGGTCGA+TGG | - | chr1_3:4661322-4661341 | None:intergenic | 40.0% | |
| CATCGACCCTTACTATCATT+TGG | + | chr1_3:4661320-4661339 | Msa0098640:intron | 40.0% | |
| CAACAAAGATTGCTCTCGTA+TGG | + | chr1_3:4661344-4661363 | Msa0098640:intron | 40.0% | |
| AAAGATTGCTCTCGTATGGT+TGG | + | chr1_3:4661348-4661367 | Msa0098640:intron | 40.0% | |
| CCAGTACTCTCTATATGCAT+CGG | - | chr1_3:4661415-4661434 | None:intergenic | 40.0% | |
| !! | GAGAGTACTGGTTTCGTTTA+TGG | + | chr1_3:4661424-4661443 | Msa0098640:intron | 40.0% |
| AACTGACACTTATAAGGTGG+TGG | + | chr1_3:4661566-4661585 | Msa0098640:intron | 40.0% | |
| TCTGTTGATGTGGATGGTAA+CGG | - | chr1_3:4661596-4661615 | None:intergenic | 40.0% | |
| ACAATGCTTCTCTGTTGATG+TGG | - | chr1_3:4661606-4661625 | None:intergenic | 40.0% | |
| ! | TAAGTGTGGGTGATAACGTT+TGG | + | chr1_3:4661634-4661653 | Msa0098640:intron | 40.0% |
| GTTCCTCTTCATTTGGACTT+TGG | + | chr1_3:4661681-4661700 | Msa0098640:intron | 40.0% | |
| TCCTCTTCATTTGGACTTTG+GGG | + | chr1_3:4661683-4661702 | Msa0098640:intron | 40.0% | |
| AATGCGGATGTGTATTTGAG+TGG | + | chr1_3:4661717-4661736 | Msa0098640:intron | 40.0% | |
| !!! | GATGAAGTATCGTTTTCCGT+TGG | + | chr1_3:4662067-4662086 | Msa0098640:intron | 40.0% |
| CTTATCCTCAAGGTTGAAGT+CGG | + | chr1_3:4662299-4662318 | Msa0098640:intron | 40.0% | |
| TTATCCTCAAGGTTGAAGTC+GGG | + | chr1_3:4662300-4662319 | Msa0098640:intron | 40.0% | |
| TCGAGCTTGAGGAAAAGAAA+AGG | + | chr1_3:4662392-4662411 | Msa0098640:intron | 40.0% | |
| !! | TGATGATGGCTTGATTCACA+AGG | + | chr1_3:4663134-4663153 | Msa0098640:CDS | 40.0% |
| GCACTATTTCAAACCCCAAA+TGG | + | chr1_3:4663287-4663306 | Msa0098640:CDS | 40.0% | |
| GAGGAACTAACATAGCGAAA+TGG | + | chr1_3:4663487-4663506 | Msa0098640:intron | 40.0% | |
| ! | TTTTCATCCATTGGGGCATA+AGG | - | chr1_3:4663723-4663742 | None:intergenic | 40.0% |
| TCTATGACCTGAGACAAACA+GGG | + | chr1_3:4663857-4663876 | Msa0098640:CDS | 40.0% | |
| CAATAAACCCTGTTTGTCTC+AGG | - | chr1_3:4663867-4663886 | None:intergenic | 40.0% | |
| ! | TTGGTTTCAGGTGAAGCAAA+TGG | + | chr1_3:4664357-4664376 | Msa0098640:intron | 40.0% |
| ATTGTCTGCAGACAAAGTGA+AGG | - | chr1_3:4664508-4664527 | None:intergenic | 40.0% | |
| GACGTTGATCAAGACAATGA+TGG | + | chr1_3:4664532-4664551 | Msa0098640:CDS | 40.0% | |
| GTCATGTTCTTCAAGAGAGA+CGG | - | chr1_3:4664601-4664620 | None:intergenic | 40.0% | |
| ! | AAGCTATTCTGAAGAGTGTG+TGG | + | chr1_3:4664837-4664856 | Msa0098640:intron | 40.0% |
| TCAAATAAGGCAATGCAGAC+AGG | + | chr1_3:4664951-4664970 | Msa0098640:intron | 40.0% | |
| !! | TGTCACTTTGTCATCTTCCA+GGG | + | chr1_3:4665154-4665173 | Msa0098640:intron | 40.0% |
| ! | CATGAAAACTTGGTGGCTTT+AGG | - | chr1_3:4665362-4665381 | None:intergenic | 40.0% |
| TTCACTTGAAGATGTCACTG+CGG | - | chr1_3:4665516-4665535 | None:intergenic | 40.0% | |
| CGCAAGTAAGCTTGTCTTTA+AGG | + | chr1_3:4665561-4665580 | Msa0098640:three_prime_UTR | 40.0% | |
| ACCTCAAAGACAGCTATGAG+TGG | - | chr1_3:4660053-4660072 | None:intergenic | 45.0% | |
| !! | GTTTTGGTCTTTGCTGTCAC+AGG | + | chr1_3:4660071-4660090 | Msa0098640:CDS | 45.0% |
| TGCTGGTGCAAATCTGTTGT+GGG | - | chr1_3:4660919-4660938 | None:intergenic | 45.0% | |
| TTGCTGGTGCAAATCTGTTG+TGG | - | chr1_3:4660920-4660939 | None:intergenic | 45.0% | |
| GAGTCATAGACGCAACTGAT+TGG | - | chr1_3:4661011-4661030 | None:intergenic | 45.0% | |
| TCAGGTGTGTCAGTAAGTCT+TGG | + | chr1_3:4661106-4661125 | Msa0098640:intron | 45.0% | |
| TCGATGGAAAAGGTGAATGC+CGG | - | chr1_3:4661306-4661325 | None:intergenic | 45.0% | |
| ! | CCGATGCATATAGAGAGTAC+TGG | + | chr1_3:4661412-4661431 | Msa0098640:intron | 45.0% |
| GTTTATGGAACCCAGTAACC+AGG | + | chr1_3:4661439-4661458 | Msa0098640:intron | 45.0% | |
| CAGATGTTGTCCTGGTTACT+GGG | - | chr1_3:4661452-4661471 | None:intergenic | 45.0% | |
| AAATGTCGCAGATGTTGTCC+TGG | - | chr1_3:4661460-4661479 | None:intergenic | 45.0% | |
| AGGACAACATCTGCGACATT+TGG | + | chr1_3:4661459-4661478 | Msa0098640:intron | 45.0% | |
| CTGTTGATGTGGATGGTAAC+GGG | - | chr1_3:4661595-4661614 | None:intergenic | 45.0% | |
| TGCTTCTCTGTTGATGTGGA+TGG | - | chr1_3:4661602-4661621 | None:intergenic | 45.0% | |
| TCCCCAAAGTCCAAATGAAG+AGG | - | chr1_3:4661687-4661706 | None:intergenic | 45.0% | |
| ATTTGAGTGGCACACTGAAC+TGG | + | chr1_3:4661730-4661749 | Msa0098640:intron | 45.0% | |
| !! | ACACCAACTGTTGGTTCAGT+AGG | - | chr1_3:4661894-4661913 | None:intergenic | 45.0% |
| ! | TGAACCAACAGTTGGTGTGT+TGG | + | chr1_3:4661896-4661915 | Msa0098640:intron | 45.0% |
| ! | GAACCAACAGTTGGTGTGTT+GGG | + | chr1_3:4661897-4661916 | Msa0098640:intron | 45.0% |
| ! | AACCAACAGTTGGTGTGTTG+GGG | + | chr1_3:4661898-4661917 | Msa0098640:intron | 45.0% |
| GCAGATGATGAAATTCAGGG+TGG | + | chr1_3:4661971-4661990 | Msa0098640:intron | 45.0% | |
| AATTCAGGGTGGAAGAGTCT+TGG | + | chr1_3:4661982-4662001 | Msa0098640:intron | 45.0% | |
| CCATCCTCAGAAAGAAGCAA+CGG | - | chr1_3:4662095-4662114 | None:intergenic | 45.0% | |
| ATATACGCTGGGTTTCAACC+AGG | + | chr1_3:4662240-4662259 | Msa0098640:intron | 45.0% | |
| TATACGCTGGGTTTCAACCA+GGG | + | chr1_3:4662241-4662260 | Msa0098640:intron | 45.0% | |
| CGACTTCAACCTTGAGGATA+AGG | - | chr1_3:4662301-4662320 | None:intergenic | 45.0% | |
| !! | AACAGTTGGTGAGGCAACTT+GGG | - | chr1_3:4662355-4662374 | None:intergenic | 45.0% |
| ! | ACAAGACAGAACAGTTGGTG+AGG | - | chr1_3:4662364-4662383 | None:intergenic | 45.0% |
| CAGTGACAAGACAGAACAGT+TGG | - | chr1_3:4662369-4662388 | None:intergenic | 45.0% | |
| TGTCACTGTATTCGAGCTTG+AGG | + | chr1_3:4662381-4662400 | Msa0098640:intron | 45.0% | |
| CTCTGATGTACACAACCTTG+TGG | + | chr1_3:4662544-4662563 | Msa0098640:intron | 45.0% | |
| GTGACCAGAACCAAAAGAAG+AGG | - | chr1_3:4662652-4662671 | None:intergenic | 45.0% | |
| TTTCCATCCTTATGCCCCAA+TGG | + | chr1_3:4663713-4663732 | Msa0098640:CDS | 45.0% | |
| CTCTATGACCTGAGACAAAC+AGG | + | chr1_3:4663856-4663875 | Msa0098640:CDS | 45.0% | |
| AACAGGGTTTATTGAGCCAG+AGG | + | chr1_3:4663873-4663892 | Msa0098640:CDS | 45.0% | |
| ACTACTGAACTCACTTCCTC+TGG | - | chr1_3:4663892-4663911 | None:intergenic | 45.0% | |
| !! | GTGTCACTTTGTCATCTTCC+AGG | + | chr1_3:4665153-4665172 | Msa0098640:intron | 45.0% |
| !! | TGGCTTTAGGGTATGATTGC+AGG | - | chr1_3:4665349-4665368 | None:intergenic | 45.0% |
| TACAGGGGAATGAGTAGGCA+TGG | - | chr1_3:4659888-4659907 | None:intergenic | 50.0% | |
| GCCACTCATAGCTGTCTTTG+AGG | + | chr1_3:4660049-4660068 | Msa0098640:CDS | 50.0% | |
| TGCGTCTATGACTCTATCGC+CGG | + | chr1_3:4661017-4661036 | Msa0098640:intron | 50.0% | |
| ATATCGTCAGAGAGGACCAC+CGG | - | chr1_3:4661039-4661058 | None:intergenic | 50.0% | |
| CAGCGATGATATCGTCAGAG+AGG | - | chr1_3:4661047-4661066 | None:intergenic | 50.0% | |
| CTCTGACGATATCATCGCTG+AGG | + | chr1_3:4661047-4661066 | Msa0098640:intron | 50.0% | |
| CAAAGGCTTGATCAGGGATG+AGG | - | chr1_3:4661137-4661156 | None:intergenic | 50.0% | |
| CACATCACAGATCTCACACC+AGG | + | chr1_3:4661216-4661235 | Msa0098640:intron | 50.0% | |
| CGTATGGTTGGCACATGCAA+TGG | + | chr1_3:4661360-4661379 | Msa0098640:intron | 50.0% | |
| GCAGATGTTGTCCTGGTTAC+TGG | - | chr1_3:4661453-4661472 | None:intergenic | 50.0% | |
| ! | AATCAGTACTTGCTGCCTCG+TGG | + | chr1_3:4661852-4661871 | Msa0098640:intron | 50.0% |
| GGAACTTCCTCAAAACCACG+AGG | - | chr1_3:4661870-4661889 | None:intergenic | 50.0% | |
| !! | CCAACTGTTGGTTCAGTAGG+TGG | - | chr1_3:4661891-4661910 | None:intergenic | 50.0% |
| CCACCTACTGAACCAACAGT+TGG | + | chr1_3:4661888-4661907 | Msa0098640:intron | 50.0% | |
| ! | ACCAACAGTTGGTGTGTTGG+GGG | + | chr1_3:4661899-4661918 | Msa0098640:intron | 50.0% |
| GAAAGAAGCAACGGCACCAA+CGG | - | chr1_3:4662086-4662105 | None:intergenic | 50.0% | |
| ! | CCGTTGCTTCTTTCTGAGGA+TGG | + | chr1_3:4662092-4662111 | Msa0098640:intron | 50.0% |
| GTTTCCCGACTTCAACCTTG+AGG | - | chr1_3:4662307-4662326 | None:intergenic | 50.0% | |
| GTCGGGAAACTGCTACTGAA+TGG | + | chr1_3:4662317-4662336 | Msa0098640:intron | 50.0% | |
| !! | GAACAGTTGGTGAGGCAACT+TGG | - | chr1_3:4662356-4662375 | None:intergenic | 50.0% |
| CATCCATTGGGGCATAAGGA+TGG | - | chr1_3:4663719-4663738 | None:intergenic | 50.0% | |
| CACATAAGCCGCATCGCTTT+AGG | + | chr1_3:4664297-4664316 | Msa0098640:intron | 50.0% | |
| AAACGCAGTGGTGATATCCC+TGG | - | chr1_3:4665174-4665193 | None:intergenic | 50.0% | |
| GTCTATGACTCTATCGCCGG+TGG | + | chr1_3:4661020-4661039 | Msa0098640:intron | 55.0% | |
| !! | CTTGCTGCCTCGTGGTTTTG+AGG | + | chr1_3:4661860-4661879 | Msa0098640:intron | 55.0% |
| ! | CCAACAGTTGGTGTGTTGGG+GGG | + | chr1_3:4661900-4661919 | Msa0098640:intron | 55.0% |
| !! | GGTGCCGTTGCTTCTTTCTG+AGG | + | chr1_3:4662088-4662107 | Msa0098640:intron | 55.0% |
| TGAGGCAACTTGGGAGGACA+AGG | - | chr1_3:4662346-4662365 | None:intergenic | 55.0% | |
| !! | AGTTGGTGAGGCAACTTGGG+AGG | - | chr1_3:4662352-4662371 | None:intergenic | 55.0% |
| TCGCTGACGATGCATCAGCT+TGG | + | chr1_3:4662485-4662504 | Msa0098640:intron | 55.0% | |
| CGCTGACGATGCATCAGCTT+GGG | + | chr1_3:4662486-4662505 | Msa0098640:intron | 55.0% | |
| GCTGACGATGCATCAGCTTG+GGG | + | chr1_3:4662487-4662506 | Msa0098640:intron | 55.0% | |
| GATGGAAAACACTGAGCGCG+TGG | - | chr1_3:4663701-4663720 | None:intergenic | 55.0% | |
| TCTCACACCAGGCGACTCGT+CGG | + | chr1_3:4661227-4661246 | Msa0098640:intron | 60.0% | |
| CCCCCCAACACACCAACTGT+TGG | - | chr1_3:4661903-4661922 | None:intergenic | 60.0% | |
| CTGTCATCCGACGAGTCGCC+TGG | - | chr1_3:4661237-4661256 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 4659727 | 4665690 | 4659727 | ID=Msa0098640;Name=Msa0098640 |
| chr1_3 | mRNA | 4659727 | 4665690 | 4659727 | ID=Msa0098640-mRNA-1;Parent=Msa0098640;Name=Msa0098640-mRNA-1;_AED=0.11;_eAED=0.11;_QI=160|0.77|0.9|1|0.88|0.9|10|461|268 |
| chr1_3 | exon | 4659727 | 4659904 | 4659727 | ID=Msa0098640-mRNA-1:exon:1583;Parent=Msa0098640-mRNA-1 |
| chr1_3 | exon | 4660005 | 4660182 | 4660005 | ID=Msa0098640-mRNA-1:exon:1584;Parent=Msa0098640-mRNA-1 |
| chr1_3 | exon | 4660361 | 4660417 | 4660361 | ID=Msa0098640-mRNA-1:exon:1585;Parent=Msa0098640-mRNA-1 |
| chr1_3 | exon | 4663073 | 4663155 | 4663073 | ID=Msa0098640-mRNA-1:exon:1586;Parent=Msa0098640-mRNA-1 |
| chr1_3 | exon | 4663272 | 4663331 | 4663272 | ID=Msa0098640-mRNA-1:exon:1587;Parent=Msa0098640-mRNA-1 |
| chr1_3 | exon | 4663642 | 4663750 | 4663642 | ID=Msa0098640-mRNA-1:exon:1588;Parent=Msa0098640-mRNA-1 |
| chr1_3 | exon | 4663845 | 4663897 | 4663845 | ID=Msa0098640-mRNA-1:exon:1589;Parent=Msa0098640-mRNA-1 |
| chr1_3 | exon | 4664367 | 4664447 | 4664367 | ID=Msa0098640-mRNA-1:exon:1590;Parent=Msa0098640-mRNA-1 |
| chr1_3 | exon | 4664523 | 4664635 | 4664523 | ID=Msa0098640-mRNA-1:exon:1591;Parent=Msa0098640-mRNA-1 |
| chr1_3 | exon | 4665175 | 4665690 | 4665175 | ID=Msa0098640-mRNA-1:exon:1592;Parent=Msa0098640-mRNA-1 |
| chr1_3 | five_prime_UTR | 4659727 | 4659886 | 4659727 | ID=Msa0098640-mRNA-1:five_prime_utr;Parent=Msa0098640-mRNA-1 |
| chr1_3 | CDS | 4659887 | 4659904 | 4659887 | ID=Msa0098640-mRNA-1:cds;Parent=Msa0098640-mRNA-1 |
| chr1_3 | CDS | 4660005 | 4660182 | 4660005 | ID=Msa0098640-mRNA-1:cds;Parent=Msa0098640-mRNA-1 |
| chr1_3 | CDS | 4660361 | 4660417 | 4660361 | ID=Msa0098640-mRNA-1:cds;Parent=Msa0098640-mRNA-1 |
| chr1_3 | CDS | 4663073 | 4663155 | 4663073 | ID=Msa0098640-mRNA-1:cds;Parent=Msa0098640-mRNA-1 |
| chr1_3 | CDS | 4663272 | 4663331 | 4663272 | ID=Msa0098640-mRNA-1:cds;Parent=Msa0098640-mRNA-1 |
| chr1_3 | CDS | 4663642 | 4663750 | 4663642 | ID=Msa0098640-mRNA-1:cds;Parent=Msa0098640-mRNA-1 |
| chr1_3 | CDS | 4663845 | 4663897 | 4663845 | ID=Msa0098640-mRNA-1:cds;Parent=Msa0098640-mRNA-1 |
| chr1_3 | CDS | 4664367 | 4664447 | 4664367 | ID=Msa0098640-mRNA-1:cds;Parent=Msa0098640-mRNA-1 |
| chr1_3 | CDS | 4664523 | 4664635 | 4664523 | ID=Msa0098640-mRNA-1:cds;Parent=Msa0098640-mRNA-1 |
| chr1_3 | CDS | 4665175 | 4665229 | 4665175 | ID=Msa0098640-mRNA-1:cds;Parent=Msa0098640-mRNA-1 |
| chr1_3 | three_prime_UTR | 4665230 | 4665690 | 4665230 | ID=Msa0098640-mRNA-1:three_prime_utr;Parent=Msa0098640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
