Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0005450 | XP_039688178.1 | 89.610 | 539 | 20 | 2 | 1 | 503 | 1 | 539 | 0.0 | 908 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0005450 | sp|Q9FZL4|MGDG_SOYBN | 70.732 | 533 | 112 | 8 | 8 | 503 | 5 | 530 | 0.0 | 724 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0005450 | A0A396JL64 | 89.610 | 539 | 20 | 2 | 1 | 503 | 1 | 539 | 0.0 | 908 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005450 | Msa0054170 | 0.979822 | 8.069234e-149 | -8.615850e-47 |
| Msa0005450 | Msa0086020 | -0.818810 | 1.614294e-52 | -8.615850e-47 |
| Msa0005450 | Msa1353800 | 0.932912 | 4.168264e-95 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0005450 | MtrunA17_Chr1g0150361 | 89.610 | 539 | 20 | 2 | 1 | 503 | 1 | 539 | 0.0 | 908 |
| Msa0005450 | MtrunA17_Chr8g0347051 | 89.963 | 538 | 19 | 2 | 1 | 503 | 1 | 538 | 0.0 | 907 |
| Msa0005450 | MtrunA17_Chr4g0064711 | 61.318 | 349 | 133 | 1 | 147 | 493 | 102 | 450 | 4.87e-151 | 439 |
| Msa0005450 | MtrunA17_Chr8g0347041 | 63.736 | 91 | 1 | 1 | 132 | 190 | 88 | 178 | 4.73e-29 | 114 |
| Msa0005450 | MtrunA17_Chr8g0347341 | 63.736 | 91 | 1 | 1 | 132 | 190 | 88 | 178 | 2.07e-28 | 114 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0005450 | AT4G31780.2 | 63.653 | 542 | 149 | 8 | 1 | 503 | 1 | 533 | 0.0 | 658 |
| Msa0005450 | AT4G31780.3 | 60.739 | 568 | 149 | 9 | 1 | 503 | 1 | 559 | 0.0 | 644 |
| Msa0005450 | AT4G31780.1 | 81.894 | 359 | 63 | 1 | 147 | 503 | 8 | 366 | 0.0 | 616 |
| Msa0005450 | AT2G11810.1 | 56.919 | 383 | 159 | 3 | 123 | 500 | 83 | 464 | 8.52e-151 | 439 |
| Msa0005450 | AT5G20410.1 | 57.105 | 380 | 160 | 2 | 123 | 500 | 79 | 457 | 1.72e-148 | 433 |
| Msa0005450 | AT2G11810.4 | 60.177 | 339 | 130 | 2 | 167 | 500 | 3 | 341 | 8.98e-143 | 414 |
| Msa0005450 | AT2G11810.2 | 54.286 | 280 | 125 | 2 | 123 | 400 | 83 | 361 | 2.32e-100 | 306 |
| Msa0005450 | AT2G11810.3 | 53.901 | 282 | 127 | 2 | 123 | 402 | 83 | 363 | 3.67e-100 | 306 |
Find 132 sgRNAs with CRISPR-Local
Find 388 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATAATAAAATTAATAATTT+TGG | 0.100623 | 1_1:+8088394 | Msa0005450:three_prime_UTR |
| TCCCATGCATTCTTCAATTT+TGG | 0.143640 | 1_1:-8087372 | None:intergenic |
| GTAGGCCATAAATCTTTATT+TGG | 0.144917 | 1_1:-8085614 | None:intergenic |
| GATGAACTAAGGAGAGATTT+AGG | 0.146974 | 1_1:+8086559 | Msa0005450:CDS |
| TCCAGCCTTCATTGCCCTTT+TGG | 0.207960 | 1_1:-8085580 | None:intergenic |
| AGGTGTTTATTACCGATTTA+TGG | 0.217636 | 1_1:+8084132 | Msa0005450:intron |
| GTTCCCTATGTTGTTGAAAA+TGG | 0.232287 | 1_1:+8088029 | Msa0005450:CDS |
| CAAACCCAAATAAAGATTTA+TGG | 0.240574 | 1_1:+8085609 | Msa0005450:CDS |
| GGGAATGGTGTTGGTGGAAA+TGG | 0.257208 | 1_1:+8083222 | Msa0005450:CDS |
| GGTGGTGGTGTTGGTGGTGA+GGG | 0.289092 | 1_1:+8083201 | Msa0005450:CDS |
| TGGTGGTGGTGTTGGTGGTG+AGG | 0.295208 | 1_1:+8083200 | Msa0005450:CDS |
| ACTAAACATTATAATCAAAT+TGG | 0.322068 | 1_1:-8088353 | None:intergenic |
| TCCGATTGGATTCGCTTCGC+TGG | 0.325021 | 1_1:+8083161 | Msa0005450:CDS |
| GTGAACATGCTTCTGAAGTT+AGG | 0.332228 | 1_1:-8082972 | None:intergenic |
| ATGAACTAAGGAGAGATTTA+GGG | 0.343617 | 1_1:+8086560 | Msa0005450:CDS |
| ATGTAATCATTTAAAATAAT+AGG | 0.345699 | 1_1:-8087543 | None:intergenic |
| ACAAACTCAGTTCTATTGAT+TGG | 0.345962 | 1_1:+8086740 | Msa0005450:CDS |
| ATGGCCTCTGCAATTGTCCC+TGG | 0.362907 | 1_1:-8087507 | None:intergenic |
| AAAATTGTTGCGGACTGGTT+TGG | 0.366157 | 1_1:+8088089 | Msa0005450:CDS |
| TGCACACTGATTATTATATC+AGG | 0.373255 | 1_1:-8085314 | None:intergenic |
| TAGGCCATAAATCTTTATTT+GGG | 0.377476 | 1_1:-8085613 | None:intergenic |
| TCTTCCTGCTGTATTATTGA+TGG | 0.378039 | 1_1:+8086594 | Msa0005450:CDS |
| TGGCATACCTTTGGCCGAAC+AGG | 0.379500 | 1_1:-8085660 | None:intergenic |
| TTTATAAAGGAAGGTCTAAC+AGG | 0.381701 | 1_1:-8085636 | None:intergenic |
| GTGGTGGTGTTGGTGGTGAG+GGG | 0.391464 | 1_1:+8083202 | Msa0005450:CDS |
| CTTCCTGCTGTATTATTGAT+GGG | 0.393576 | 1_1:+8086595 | Msa0005450:CDS |
| GGTGGTGAGGGGAATGGTGT+TGG | 0.397626 | 1_1:+8083213 | Msa0005450:CDS |
| GGTGTTGGTGGTGAGGGGAA+TGG | 0.402477 | 1_1:+8083207 | Msa0005450:CDS |
| GTTGATGACGGTGGTGGTGG+TGG | 0.406284 | 1_1:+8083186 | Msa0005450:CDS |
| TTTGAATTAGGTTCACGAAT+TGG | 0.407713 | 1_1:+8082916 | Msa0005450:CDS |
| GCGGTGGTGGTTATAAGTTT+AGG | 0.412585 | 1_1:+8083088 | Msa0005450:CDS |
| GGAATGGTGTTGGTGGAAAT+GGG | 0.413937 | 1_1:+8083223 | Msa0005450:CDS |
| TGGCCGAACAGGCTTTATAA+AGG | 0.422561 | 1_1:-8085649 | None:intergenic |
| TGTTGGTGGAAATGGGAATC+GGG | 0.425641 | 1_1:+8083230 | Msa0005450:CDS |
| TTGTGGAGGATGACCTACTA+TGG | 0.432904 | 1_1:+8084224 | Msa0005450:CDS |
| GTGTTGGTGGAAATGGGAAT+CGG | 0.433262 | 1_1:+8083229 | Msa0005450:CDS |
| GGAGTTGATGACGGTGGTGG+TGG | 0.440641 | 1_1:+8083183 | Msa0005450:CDS |
| CCGATTGGATTCGCTTCGCT+GGG | 0.440816 | 1_1:+8083162 | Msa0005450:CDS |
| CTTCCTTTATAAAGCCTGTT+CGG | 0.450461 | 1_1:+8085646 | Msa0005450:CDS |
| AAATGATTACATTGCCGGGC+AGG | 0.456227 | 1_1:+8087554 | Msa0005450:CDS |
| TGATGTGGAAGATGAAGGAT+TGG | 0.459972 | 1_1:+8083254 | Msa0005450:CDS |
| TTGGGATTGAAGAGTGGTGA+GGG | 0.460128 | 1_1:+8083273 | Msa0005450:CDS |
| TGCATTAAAACTAGCAAGGC+CGG | 0.462786 | 1_1:+8088148 | Msa0005450:CDS |
| GCCAAAAGGGCAATGAAGGC+TGG | 0.464526 | 1_1:+8085579 | Msa0005450:CDS |
| CGGGTTGATGTGGAAGATGA+AGG | 0.465885 | 1_1:+8083249 | Msa0005450:CDS |
| TGCCCGAGCAGTAGCTTCAA+TGG | 0.468895 | 1_1:-8086638 | None:intergenic |
| TAGTGTATCAATACCTTCAC+TGG | 0.470804 | 1_1:-8086769 | None:intergenic |
| TTCCTTTGATTTCAGGAAGC+GGG | 0.473906 | 1_1:+8088002 | Msa0005450:intron |
| GGTGAGGGGAATGGTGTTGG+TGG | 0.474033 | 1_1:+8083216 | Msa0005450:CDS |
| AATAGGCAGGCCTCGAATCA+TGG | 0.478545 | 1_1:-8087526 | None:intergenic |
| GAAGCTACTGCTCGGGCACT+TGG | 0.480129 | 1_1:+8086643 | Msa0005450:CDS |
| CAACTACAGATGTTGCCAAA+AGG | 0.481512 | 1_1:+8085565 | Msa0005450:CDS |
| CCCAGCGAAGCGAATCCAAT+CGG | 0.484023 | 1_1:-8083162 | None:intergenic |
| TGTTGCCAAAAGGGCAATGA+AGG | 0.487028 | 1_1:+8085575 | Msa0005450:CDS |
| AACTACAGATGTTGCCAAAA+GGG | 0.488345 | 1_1:+8085566 | Msa0005450:CDS |
| TAATTAGAAAGAAGTGAAGC+TGG | 0.489003 | 1_1:-8082994 | None:intergenic |
| TACCAAAATTGAAGAATGCA+TGG | 0.490489 | 1_1:+8087370 | Msa0005450:CDS |
| TGGCCTCTGCAATTGTCCCT+GGG | 0.498243 | 1_1:-8087506 | None:intergenic |
| GAGAGATTTAGGGATGGATG+AGG | 0.498586 | 1_1:+8086570 | Msa0005450:CDS |
| TTCCTGCTGTATTATTGATG+GGG | 0.501628 | 1_1:+8086596 | Msa0005450:CDS |
| TCCCATTGAAGCTACTGCTC+GGG | 0.505735 | 1_1:+8086636 | Msa0005450:CDS |
| TTCTCTAATAGGATGAACTA+AGG | 0.511639 | 1_1:+8086548 | Msa0005450:intron |
| AGTTTAAACAATAGCGGTGG+TGG | 0.514164 | 1_1:+8083075 | Msa0005450:CDS |
| GCCCGAGCAGTAGCTTCAAT+GGG | 0.516727 | 1_1:-8086637 | None:intergenic |
| ACGTGGGGCCGTTCCATAGT+AGG | 0.519039 | 1_1:-8084237 | None:intergenic |
| TAGCGAAAATTGTTGCGGAC+TGG | 0.524664 | 1_1:+8088084 | Msa0005450:CDS |
| TGAGGGGAAGAAAGTGAAGA+AGG | 0.529010 | 1_1:+8083290 | Msa0005450:CDS |
| CTGTTAGGGTTCATTGTGAG+AGG | 0.529931 | 1_1:+8083136 | Msa0005450:CDS |
| AAACATTATAATCAAATTGG+TGG | 0.534413 | 1_1:-8088350 | None:intergenic |
| AAATGGGAATCGGGTTGATG+TGG | 0.534846 | 1_1:+8083239 | Msa0005450:CDS |
| TATGTTGTTGAAAATGGTTG+TGG | 0.536014 | 1_1:+8088035 | Msa0005450:CDS |
| ATTGTTTAAACTGAGTGAAA+CGG | 0.538925 | 1_1:-8083064 | None:intergenic |
| GTGTGAGGTTGTTGAAGTAA+AGG | 0.540601 | 1_1:-8083017 | None:intergenic |
| CTGGGAGTTGATGACGGTGG+TGG | 0.541803 | 1_1:+8083180 | Msa0005450:CDS |
| TATAAAGCCTGTTCGGCCAA+AGG | 0.541804 | 1_1:+8085653 | Msa0005450:CDS |
| GTCCCATTGAAGCTACTGCT+CGG | 0.543348 | 1_1:+8086635 | Msa0005450:CDS |
| TTACTAGCTCGTGCATGTCA+TGG | 0.545685 | 1_1:-8088190 | None:intergenic |
| AAAGTACTCTAAATTGCCTA+AGG | 0.546044 | 1_1:+8088058 | Msa0005450:CDS |
| AGAGGAACGTGTTGCATCAG+TGG | 0.547034 | 1_1:-8085338 | None:intergenic |
| TCCTGCTGTATTATTGATGG+GGG | 0.548155 | 1_1:+8086597 | Msa0005450:CDS |
| CTTTGTAATAATGCAATCAC+AGG | 0.552893 | 1_1:-8087396 | None:intergenic |
| CTGTGATTGCATTATTACAA+AGG | 0.560129 | 1_1:+8087397 | Msa0005450:CDS |
| TGTGTGCTCAGACCATAAAT+CGG | 0.560704 | 1_1:-8084144 | None:intergenic |
| GGAATTTGATTGAACGGCCA+AGG | 0.560974 | 1_1:-8084167 | None:intergenic |
| CAACTTCAACATTCATAGCT+CGG | 0.561242 | 1_1:+8084285 | Msa0005450:CDS |
| GCTTCGCTGGGAGTTGATGA+CGG | 0.562992 | 1_1:+8083174 | Msa0005450:CDS |
| ATTGCAGAGGCCATGATTCG+AGG | 0.563068 | 1_1:+8087516 | Msa0005450:CDS |
| AACATTATAATCAAATTGGT+GGG | 0.569853 | 1_1:-8088349 | None:intergenic |
| AATCATTTAAAATAATAGGC+AGG | 0.569875 | 1_1:-8087539 | None:intergenic |
| CATTGTGAGAGGATTCCGAT+TGG | 0.571847 | 1_1:+8083147 | Msa0005450:CDS |
| GGAGATTTATTAAATGACGA+GGG | 0.574821 | 1_1:+8086664 | Msa0005450:CDS |
| CGAACAGGCTTTATAAAGGA+AGG | 0.575344 | 1_1:-8085645 | None:intergenic |
| CAGAACTAAACTAACCATGT+TGG | 0.579591 | 1_1:-8085437 | None:intergenic |
| TGAGAACCACATTACCTGCC+CGG | 0.584401 | 1_1:-8087568 | None:intergenic |
| ATCACAAGAATCTGACCTGT+GGG | 0.585615 | 1_1:-8086691 | None:intergenic |
| TGATTGGAAGATTCCAGTGA+AGG | 0.586288 | 1_1:+8086756 | Msa0005450:CDS |
| ACTAAACTAACCATGTTGGA+TGG | 0.594783 | 1_1:-8085433 | None:intergenic |
| TGGGATTGAAGAGTGGTGAG+GGG | 0.596691 | 1_1:+8083274 | Msa0005450:CDS |
| CCTGCTGTATTATTGATGGG+GGG | 0.598824 | 1_1:+8086598 | Msa0005450:CDS |
| AATGTGAAAGGCAGCAAAGG+TGG | 0.603076 | 1_1:+8088295 | Msa0005450:three_prime_UTR |
| ACCAAAATTGAAGAATGCAT+GGG | 0.604354 | 1_1:+8087371 | Msa0005450:CDS |
| GATGTGGAAGATGAAGGATT+GGG | 0.606638 | 1_1:+8083255 | Msa0005450:CDS |
| TGAGCACATGCCATCCAACA+TGG | 0.607260 | 1_1:+8085423 | Msa0005450:CDS |
| TAAAGGAAGGTCTAACAGGT+AGG | 0.611675 | 1_1:-8085632 | None:intergenic |
| GGTCAGATTCTTGTGATCTG+TGG | 0.618567 | 1_1:+8086697 | Msa0005450:CDS |
| AAAATGCATTAAAACTAGCA+AGG | 0.621362 | 1_1:+8088144 | Msa0005450:CDS |
| TGGCCCAGGGACAATTGCAG+AGG | 0.622682 | 1_1:+8087503 | Msa0005450:CDS |
| TCACTCAGTTTAAACAATAG+CGG | 0.624973 | 1_1:+8083069 | Msa0005450:CDS |
| CTTCAACAACCTCACACGTG+TGG | 0.626249 | 1_1:+8083023 | Msa0005450:CDS |
| CTCAGTTTAAACAATAGCGG+TGG | 0.637662 | 1_1:+8083072 | Msa0005450:CDS |
| ACTAAGGAGAGATTTAGGGA+TGG | 0.645174 | 1_1:+8086564 | Msa0005450:CDS |
| TGGAGATTTATTAAATGACG+AGG | 0.645340 | 1_1:+8086663 | Msa0005450:CDS |
| TGGTGAAACATGGACCGTTG+TGG | 0.648644 | 1_1:+8084207 | Msa0005450:CDS |
| TATGGTCTGAGCACACACCT+TGG | 0.651270 | 1_1:+8084150 | Msa0005450:CDS |
| CTTGACCTCAAAATGCGAAG+AGG | 0.652018 | 1_1:-8085356 | None:intergenic |
| GAGATTTATTAAATGACGAG+GGG | 0.652249 | 1_1:+8086665 | Msa0005450:CDS |
| GGAGATAGCGAAAATTGTTG+CGG | 0.653478 | 1_1:+8088079 | Msa0005450:CDS |
| TTGACTGATGAACTAGACGT+GGG | 0.657276 | 1_1:-8084253 | None:intergenic |
| TTTGACTGATGAACTAGACG+TGG | 0.659531 | 1_1:-8084254 | None:intergenic |
| GATCACAAGAATCTGACCTG+TGG | 0.659557 | 1_1:-8086692 | None:intergenic |
| GAGGATGACCTACTATGGAA+CGG | 0.659969 | 1_1:+8084229 | Msa0005450:CDS |
| AGATTTATTAAATGACGAGG+GGG | 0.661667 | 1_1:+8086666 | Msa0005450:CDS |
| ATTGGGATTGAAGAGTGGTG+AGG | 0.665244 | 1_1:+8083272 | Msa0005450:CDS |
| ATGATGATGCCACACGTGTG+AGG | 0.673938 | 1_1:-8083032 | None:intergenic |
| GAAGGATTGGGATTGAAGAG+TGG | 0.674436 | 1_1:+8083267 | Msa0005450:CDS |
| GCTCAAATCTGTAATAACTG+TGG | 0.689167 | 1_1:-8085405 | None:intergenic |
| TGAAACATGGACCGTTGTGG+AGG | 0.709765 | 1_1:+8084210 | Msa0005450:CDS |
| TAGTAGGTCATCCTCCACAA+CGG | 0.715366 | 1_1:-8084221 | None:intergenic |
| TGACTGATGAACTAGACGTG+GGG | 0.741650 | 1_1:-8084252 | None:intergenic |
| TCGCTGGGAGTTGATGACGG+TGG | 0.773048 | 1_1:+8083177 | Msa0005450:CDS |
| TGTTACAAAAGAACCCAATG+CGG | 0.774333 | 1_1:+8082891 | Msa0005450:CDS |
| GTACAGCTTAATCAACACTG+AGG | 0.822600 | 1_1:+8088243 | Msa0005450:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAATAAAATTAATAATTT+TGG | + | chr1_1:8088394-8088413 | Msa0005450:three_prime_UTR | 0.0% |
| !! | AATTGTTTGATATTTATTAT+GGG | + | chr1_1:8086230-8086249 | Msa0005450:intron | 10.0% |
| !! | TAAATAAATAAATGTTGATA+TGG | + | chr1_1:8087298-8087317 | Msa0005450:intron | 10.0% |
| !!! | ATGTAATCATTTAAAATAAT+AGG | - | chr1_1:8087546-8087565 | None:intergenic | 10.0% |
| !!! | ATTTTTAGGTAAAAAAGTTA+GGG | + | chr1_1:8083703-8083722 | Msa0005450:intron | 15.0% |
| !!! | TCTTATTTCTTGTATTTTTT+AGG | + | chr1_1:8085511-8085530 | Msa0005450:intron | 15.0% |
| !! | AACCTCAAATAATAAATAAA+CGG | - | chr1_1:8085960-8085979 | None:intergenic | 15.0% |
| !! | AAGATATTAAGTGTAAAATA+GGG | - | chr1_1:8086126-8086145 | None:intergenic | 15.0% |
| !!! | CTCAAAATTCAAATTTTTAA+TGG | + | chr1_1:8086192-8086211 | Msa0005450:intron | 15.0% |
| !! | CAATTGTTTGATATTTATTA+TGG | + | chr1_1:8086229-8086248 | Msa0005450:intron | 15.0% |
| !!! | TTCACATTTTTAATTATTCT+GGG | - | chr1_1:8087060-8087079 | None:intergenic | 15.0% |
| !!! | TTTCACATTTTTAATTATTC+TGG | - | chr1_1:8087061-8087080 | None:intergenic | 15.0% |
| !! | TTGGTAAAAACAATAATTTA+GGG | - | chr1_1:8087328-8087347 | None:intergenic | 15.0% |
| !! | ATTGGTAAAAACAATAATTT+AGG | - | chr1_1:8087329-8087348 | None:intergenic | 15.0% |
| !! | AAATAAAAAAATTCATGACA+AGG | - | chr1_1:8087611-8087630 | None:intergenic | 15.0% |
| !! | ATTAGATACTAGTTAAATTT+AGG | + | chr1_1:8087892-8087911 | Msa0005450:intron | 15.0% |
| !! | ACTAAACATTATAATCAAAT+TGG | - | chr1_1:8088356-8088375 | None:intergenic | 15.0% |
| !!! | GATTTTTAGGTAAAAAAGTT+AGG | + | chr1_1:8083702-8083721 | Msa0005450:intron | 20.0% |
| !!! | GTTGTTTTTGTAAGTTATTT+TGG | + | chr1_1:8083800-8083819 | Msa0005450:intron | 20.0% |
| !! | TAGTAGAATGAGATTAAAAT+AGG | + | chr1_1:8083829-8083848 | Msa0005450:intron | 20.0% |
| !! | TTTGACGATTAATTTATGTA+CGG | + | chr1_1:8083953-8083972 | Msa0005450:intron | 20.0% |
| !! | TAACTAACAACTTAAAAACA+GGG | - | chr1_1:8084470-8084489 | None:intergenic | 20.0% |
| !! | TTGAAAATAACTTTATACGT+AGG | + | chr1_1:8085019-8085038 | Msa0005450:intron | 20.0% |
| !! | TGTATAAAACAATTCAGAAA+AGG | - | chr1_1:8085752-8085771 | None:intergenic | 20.0% |
| !!! | AATTGTTTTATACAATGAGA+TGG | + | chr1_1:8085758-8085777 | Msa0005450:intron | 20.0% |
| !!! | ATTGTTTTATACAATGAGAT+GGG | + | chr1_1:8085759-8085778 | Msa0005450:intron | 20.0% |
| !! | TTGTTAAATATGATTGTTCA+TGG | + | chr1_1:8086081-8086100 | Msa0005450:intron | 20.0% |
| !! | GAAGATATTAAGTGTAAAAT+AGG | - | chr1_1:8086127-8086146 | None:intergenic | 20.0% |
| !! | TATTTCATGTTTATGCAATT+TGG | + | chr1_1:8086488-8086507 | Msa0005450:intron | 20.0% |
| !!! | TTACTTCAATACTCTTATTT+AGG | - | chr1_1:8087014-8087033 | None:intergenic | 20.0% |
| !!! | AAGAGTATTGAAGTAAAAAA+TGG | + | chr1_1:8087018-8087037 | Msa0005450:intron | 20.0% |
| !! | TGGTAAAAACAATAATTTAG+GGG | - | chr1_1:8087327-8087346 | None:intergenic | 20.0% |
| !!! | ATTGTTTTTACCAATGTTTT+AGG | + | chr1_1:8087334-8087353 | Msa0005450:intron | 20.0% |
| !!! | AATCATTTAAAATAATAGGC+AGG | - | chr1_1:8087542-8087561 | None:intergenic | 20.0% |
| !!! | ATTTTAAATGATTACATTGC+CGG | + | chr1_1:8087549-8087568 | Msa0005450:CDS | 20.0% |
| !! | AACATTATAATCAAATTGGT+GGG | - | chr1_1:8088352-8088371 | None:intergenic | 20.0% |
| !! | AAACATTATAATCAAATTGG+TGG | - | chr1_1:8088353-8088372 | None:intergenic | 20.0% |
| ! | ATTGTTTAAACTGAGTGAAA+CGG | - | chr1_1:8083067-8083086 | None:intergenic | 25.0% |
| !!! | ATGATTTTAATAGAGCTGTT+AGG | + | chr1_1:8083121-8083140 | Msa0005450:CDS | 25.0% |
| !!! | TGATTTTAATAGAGCTGTTA+GGG | + | chr1_1:8083122-8083141 | Msa0005450:CDS | 25.0% |
| ! | AAGAAAATGACAGAATTGAA+TGG | + | chr1_1:8083507-8083526 | Msa0005450:intron | 25.0% |
| ! | GTAATTAGAGGAATGAAATA+TGG | + | chr1_1:8083657-8083676 | Msa0005450:intron | 25.0% |
| !!! | ATTTTGTTTGTTGAGTAATG+TGG | + | chr1_1:8083751-8083770 | Msa0005450:intron | 25.0% |
| !! | TGATTATGTAAAATCGATTC+TGG | + | chr1_1:8083885-8083904 | Msa0005450:intron | 25.0% |
| !! | ATGAATAATTTGCAAGTGAA+TGG | + | chr1_1:8083986-8084005 | Msa0005450:intron | 25.0% |
| !!! | AATGGTAATTTTAGGATTGA+GGG | + | chr1_1:8084004-8084023 | Msa0005450:intron | 25.0% |
| !!! | CTTTTAGGAATTTGATTGAA+CGG | - | chr1_1:8084176-8084195 | None:intergenic | 25.0% |
| !!! | TCCTAAAAGCTATAGTTTTT+TGG | + | chr1_1:8084187-8084206 | Msa0005450:CDS | 25.0% |
| !! | ACCAAAAAACTATAGCTTTT+AGG | - | chr1_1:8084191-8084210 | None:intergenic | 25.0% |
| !!! | TATAGTTTTTTGGTGAAACA+TGG | + | chr1_1:8084197-8084216 | Msa0005450:CDS | 25.0% |
| ! | AACTTATCAGTTATCCATTA+CGG | - | chr1_1:8084395-8084414 | None:intergenic | 25.0% |
| ! | GTAACTAACAACTTAAAAAC+AGG | - | chr1_1:8084471-8084490 | None:intergenic | 25.0% |
| !!! | TTTAAGTTGTTAGTTACCAT+AGG | + | chr1_1:8084474-8084493 | Msa0005450:intron | 25.0% |
| ! | ATATTGTTTGAATGATCCTA+TGG | - | chr1_1:8084493-8084512 | None:intergenic | 25.0% |
| !! | ATGTGCAATATACAGATTTT+CGG | + | chr1_1:8084619-8084638 | Msa0005450:intron | 25.0% |
| !! | AGATATTTTTCATCCAATGT+GGG | - | chr1_1:8085000-8085019 | None:intergenic | 25.0% |
| !! | AAGATATTTTTCATCCAATG+TGG | - | chr1_1:8085001-8085020 | None:intergenic | 25.0% |
| ! | AATAACATTCTCTTAGAATC+TGG | - | chr1_1:8085096-8085115 | None:intergenic | 25.0% |
| !!! | TCTTGTATATTTTTACAGTG+AGG | + | chr1_1:8085265-8085284 | Msa0005450:intron | 25.0% |
| !! | TCAGACTATAGGTAATATTT+TGG | - | chr1_1:8085483-8085502 | None:intergenic | 25.0% |
| ! | CAAACCCAAATAAAGATTTA+TGG | + | chr1_1:8085609-8085628 | Msa0005450:CDS | 25.0% |
| !! | TAGGCCATAAATCTTTATTT+GGG | - | chr1_1:8085616-8085635 | None:intergenic | 25.0% |
| !! | GTTTAGTAATTCAACTTGTT+AGG | + | chr1_1:8085812-8085831 | Msa0005450:intron | 25.0% |
| ! | ATAAATAAACGGCAAAATCA+TGG | - | chr1_1:8085949-8085968 | None:intergenic | 25.0% |
| !! | TGCCGTTTATTTATTATTTG+AGG | + | chr1_1:8085955-8085974 | Msa0005450:intron | 25.0% |
| ! | TTAAATATGATTGTTCATGG+TGG | + | chr1_1:8086084-8086103 | Msa0005450:intron | 25.0% |
| ! | CTAAAATTATAATAGTCCGT+TGG | - | chr1_1:8086279-8086298 | None:intergenic | 25.0% |
| !!! | TTTTAGTTTAGTGTACATGA+TGG | + | chr1_1:8086293-8086312 | Msa0005450:intron | 25.0% |
| ! | TATTGATACACTAATTGTTC+CGG | + | chr1_1:8086779-8086798 | Msa0005450:intron | 25.0% |
| ! | AGCAAAAAAAATGTTACTCA+TGG | + | chr1_1:8086931-8086950 | Msa0005450:intron | 25.0% |
| !! | TTCAATACTCTTATTTAGGA+CGG | - | chr1_1:8087010-8087029 | None:intergenic | 25.0% |
| ! | TTATAGTTATAATTGCTGAG+CGG | + | chr1_1:8087088-8087107 | Msa0005450:intron | 25.0% |
| ! | TTAGATATTCATTGTACAAG+AGG | - | chr1_1:8087179-8087198 | None:intergenic | 25.0% |
| !! | ACAGAAAGTTTTCTTTCTTA+TGG | + | chr1_1:8087252-8087271 | Msa0005450:intron | 25.0% |
| !! | CAGAAAGTTTTCTTTCTTAT+GGG | + | chr1_1:8087253-8087272 | Msa0005450:intron | 25.0% |
| !!! | CTTTTTTTTGTTGCTTTTGT+AGG | + | chr1_1:8087479-8087498 | Msa0005450:intron | 25.0% |
| !! | TTTTAAATGATTACATTGCC+GGG | + | chr1_1:8087550-8087569 | Msa0005450:CDS | 25.0% |
| !!! | TGCTAGTTTTAATGCATTTT+GGG | - | chr1_1:8088144-8088163 | None:intergenic | 25.0% |
| !!! | TTGCTAGTTTTAATGCATTT+TGG | - | chr1_1:8088145-8088164 | None:intergenic | 25.0% |
| ! | AAAATGCATTAAAACTAGCA+AGG | + | chr1_1:8088144-8088163 | Msa0005450:CDS | 25.0% |
| !! | TGTTTTGTGAAAAATGTGAA+AGG | + | chr1_1:8088283-8088302 | Msa0005450:three_prime_UTR | 25.0% |
| TTTGAATTAGGTTCACGAAT+TGG | + | chr1_1:8082916-8082935 | Msa0005450:CDS | 30.0% | |
| TAATTAGAAAGAAGTGAAGC+TGG | - | chr1_1:8082997-8083016 | None:intergenic | 30.0% | |
| TCACTCAGTTTAAACAATAG+CGG | + | chr1_1:8083069-8083088 | Msa0005450:CDS | 30.0% | |
| !! | TTGATTTTGATGAGTGATAC+TGG | + | chr1_1:8083315-8083334 | Msa0005450:intron | 30.0% |
| !!! | GCTGCTTTTTATCAAGAATA+TGG | + | chr1_1:8083372-8083391 | Msa0005450:intron | 30.0% |
| ! | TTAAGAGCAAGGAGATTTTT+AGG | + | chr1_1:8083689-8083708 | Msa0005450:intron | 30.0% |
| TTTAGGTAAAAAAGTTAGGG+TGG | + | chr1_1:8083706-8083725 | Msa0005450:intron | 30.0% | |
| TTAGGTAAAAAAGTTAGGGT+GGG | + | chr1_1:8083707-8083726 | Msa0005450:intron | 30.0% | |
| ! | AAATCGATTCTGGTTAAAAG+TGG | + | chr1_1:8083895-8083914 | Msa0005450:intron | 30.0% |
| ! | AATCGATTCTGGTTAAAAGT+GGG | + | chr1_1:8083896-8083915 | Msa0005450:intron | 30.0% |
| !!! | CTAACTTGGAACTAGTTTTT+TGG | + | chr1_1:8083921-8083940 | Msa0005450:intron | 30.0% |
| ! | TGCAAGTGAATGGTAATTTT+AGG | + | chr1_1:8083996-8084015 | Msa0005450:intron | 30.0% |
| !!! | GAATGGTAATTTTAGGATTG+AGG | + | chr1_1:8084003-8084022 | Msa0005450:intron | 30.0% |
| !!! | GTTGTGTTTTGTTTACACTT+TGG | + | chr1_1:8084095-8084114 | Msa0005450:intron | 30.0% |
| !! | AGGTGTTTATTACCGATTTA+TGG | + | chr1_1:8084132-8084151 | Msa0005450:intron | 30.0% |
| TGAAGTTATTTGACAAGAAC+TGG | - | chr1_1:8084339-8084358 | None:intergenic | 30.0% | |
| TGAATTAGTATATGCCGTAA+TGG | + | chr1_1:8084378-8084397 | Msa0005450:intron | 30.0% | |
| ATAAATGCATGTATGATGTG+TGG | - | chr1_1:8084595-8084614 | None:intergenic | 30.0% | |
| TTACAATAAAAATGACCGCA+CGG | + | chr1_1:8084678-8084697 | Msa0005450:intron | 30.0% | |
| TCCACATATAAAGATGTTTG+CGG | - | chr1_1:8084840-8084859 | None:intergenic | 30.0% | |
| CAAACATCTTTATATGTGGA+AGG | + | chr1_1:8084840-8084859 | Msa0005450:intron | 30.0% | |
| TGATACAATCTTAGAACTTG+AGG | - | chr1_1:8084875-8084894 | None:intergenic | 30.0% | |
| ! | CAGTAGTTATTGTAATTTGC+TGG | + | chr1_1:8085147-8085166 | Msa0005450:intron | 30.0% |
| GATGCATATATTGTTTGTTC+TGG | + | chr1_1:8085174-8085193 | Msa0005450:intron | 30.0% | |
| ! | TGCACACTGATTATTATATC+AGG | - | chr1_1:8085317-8085336 | None:intergenic | 30.0% |
| AGATGTCAAAATCAGACTAT+AGG | - | chr1_1:8085494-8085513 | None:intergenic | 30.0% | |
| GTAGGCCATAAATCTTTATT+TGG | - | chr1_1:8085617-8085636 | None:intergenic | 30.0% | |
| TTTATAAAGGAAGGTCTAAC+AGG | - | chr1_1:8085639-8085658 | None:intergenic | 30.0% | |
| TTCTTGACTTCTTATAGCTA+TGG | + | chr1_1:8085685-8085704 | Msa0005450:intron | 30.0% | |
| CAATTCAGAAAAGGTCATTT+GGG | - | chr1_1:8085743-8085762 | None:intergenic | 30.0% | |
| ACAATTCAGAAAAGGTCATT+TGG | - | chr1_1:8085744-8085763 | None:intergenic | 30.0% | |
| ATACAATGAGATGGGATAAT+AGG | + | chr1_1:8085767-8085786 | Msa0005450:intron | 30.0% | |
| CATTTATGACAACAATGAGA+CGG | + | chr1_1:8085864-8085883 | Msa0005450:intron | 30.0% | |
| ATTTATGACAACAATGAGAC+GGG | + | chr1_1:8085865-8085884 | Msa0005450:intron | 30.0% | |
| ! | GGTTCTGATTCTTTAACTAA+AGG | + | chr1_1:8086251-8086270 | Msa0005450:intron | 30.0% |
| CTATTAACCATGTGTTTGAT+TGG | + | chr1_1:8086429-8086448 | Msa0005450:intron | 30.0% | |
| TTCTCTAATAGGATGAACTA+AGG | + | chr1_1:8086548-8086567 | Msa0005450:intron | 30.0% | |
| ATGAACTAAGGAGAGATTTA+GGG | + | chr1_1:8086560-8086579 | Msa0005450:CDS | 30.0% | |
| TGGAGATTTATTAAATGACG+AGG | + | chr1_1:8086663-8086682 | Msa0005450:CDS | 30.0% | |
| GGAGATTTATTAAATGACGA+GGG | + | chr1_1:8086664-8086683 | Msa0005450:CDS | 30.0% | |
| GAGATTTATTAAATGACGAG+GGG | + | chr1_1:8086665-8086684 | Msa0005450:CDS | 30.0% | |
| AGATTTATTAAATGACGAGG+GGG | + | chr1_1:8086666-8086685 | Msa0005450:CDS | 30.0% | |
| ACAAACTCAGTTCTATTGAT+TGG | + | chr1_1:8086740-8086759 | Msa0005450:CDS | 30.0% | |
| ! | AATCTAGAACATGCATATAC+TGG | - | chr1_1:8086825-8086844 | None:intergenic | 30.0% |
| !! | TTTACCAATGTTTTAGGTCA+TGG | + | chr1_1:8087340-8087359 | Msa0005450:intron | 30.0% |
| !! | TTACCAATGTTTTAGGTCAT+GGG | + | chr1_1:8087341-8087360 | Msa0005450:intron | 30.0% |
| TACCAAAATTGAAGAATGCA+TGG | + | chr1_1:8087370-8087389 | Msa0005450:CDS | 30.0% | |
| ACCAAAATTGAAGAATGCAT+GGG | + | chr1_1:8087371-8087390 | Msa0005450:CDS | 30.0% | |
| CTTTGTAATAATGCAATCAC+AGG | - | chr1_1:8087399-8087418 | None:intergenic | 30.0% | |
| CTGTGATTGCATTATTACAA+AGG | + | chr1_1:8087397-8087416 | Msa0005450:CDS | 30.0% | |
| GATTGCATTATTACAAAGGT+TGG | + | chr1_1:8087401-8087420 | Msa0005450:intron | 30.0% | |
| TTGTGAAATAGTGTCTATAG+CGG | - | chr1_1:8087752-8087771 | None:intergenic | 30.0% | |
| ! | TAACCAGTGTTGTTAAATAG+TGG | - | chr1_1:8087847-8087866 | None:intergenic | 30.0% |
| TACTAGTTAAATTTAGGCTG+AGG | + | chr1_1:8087898-8087917 | Msa0005450:intron | 30.0% | |
| ACAACCATATTCAATCACTT+GGG | - | chr1_1:8087969-8087988 | None:intergenic | 30.0% | |
| ! | ACATCATTTCCTTTGATTTC+AGG | + | chr1_1:8087995-8088014 | Msa0005450:intron | 30.0% |
| ! | CAACCATTTTCAACAACATA+GGG | - | chr1_1:8088035-8088054 | None:intergenic | 30.0% |
| ! | ACAACCATTTTCAACAACAT+AGG | - | chr1_1:8088036-8088055 | None:intergenic | 30.0% |
| TATGTTGTTGAAAATGGTTG+TGG | + | chr1_1:8088035-8088054 | Msa0005450:CDS | 30.0% | |
| ! | AAAGTACTCTAAATTGCCTA+AGG | + | chr1_1:8088058-8088077 | Msa0005450:CDS | 30.0% |
| ! | ACAATTTTGAACACAGAATC+CGG | - | chr1_1:8088170-8088189 | None:intergenic | 30.0% |
| GTGTATCACTAGTAAAAATG+AGG | + | chr1_1:8088317-8088336 | Msa0005450:three_prime_UTR | 30.0% | |
| TGTTACAAAAGAACCCAATG+CGG | + | chr1_1:8082891-8082910 | Msa0005450:CDS | 35.0% | |
| CCTAATTCAAAAACCGCATT+GGG | - | chr1_1:8082907-8082926 | None:intergenic | 35.0% | |
| ACCTAATTCAAAAACCGCAT+TGG | - | chr1_1:8082908-8082927 | None:intergenic | 35.0% | |
| !! | ATTTTGATGAGTGATACTGG+TGG | + | chr1_1:8083318-8083337 | Msa0005450:intron | 35.0% |
| AGAATATGGCGATGATTATC+AGG | + | chr1_1:8083386-8083405 | Msa0005450:intron | 35.0% | |
| TGTCTGTGTTAGGTAATTAG+AGG | + | chr1_1:8083645-8083664 | Msa0005450:intron | 35.0% | |
| TAGGTAAAAAAGTTAGGGTG+GGG | + | chr1_1:8083708-8083727 | Msa0005450:intron | 35.0% | |
| ! | ATCGATTCTGGTTAAAAGTG+GGG | + | chr1_1:8083897-8083916 | Msa0005450:intron | 35.0% |
| !!! | AATTTTAGGATTGAGGGTCA+TGG | + | chr1_1:8084010-8084029 | Msa0005450:intron | 35.0% |
| CAACTTCAACATTCATAGCT+CGG | + | chr1_1:8084285-8084304 | Msa0005450:CDS | 35.0% | |
| TGACTCATACATGAAAGTCA+GGG | + | chr1_1:8084426-8084445 | Msa0005450:intron | 35.0% | |
| GTTTCATTGTCGTTATGAAC+TGG | + | chr1_1:8084532-8084551 | Msa0005450:intron | 35.0% | |
| TATGAACTGGATTTCTCTAG+TGG | + | chr1_1:8084545-8084564 | Msa0005450:intron | 35.0% | |
| AACTTGGCAATATTTCAGCA+CGG | + | chr1_1:8084702-8084721 | Msa0005450:intron | 35.0% | |
| TCATGCACTTTATTGTTAGG+TGG | - | chr1_1:8084749-8084768 | None:intergenic | 35.0% | |
| CTGTCATGCACTTTATTGTT+AGG | - | chr1_1:8084752-8084771 | None:intergenic | 35.0% | |
| CCACATATAAAGATGTTTGC+GGG | - | chr1_1:8084839-8084858 | None:intergenic | 35.0% | |
| ATTGTATCAGAGCCTATTCA+AGG | + | chr1_1:8084886-8084905 | Msa0005450:intron | 35.0% | |
| TAGATTTGACAAATGGAGCA+TGG | - | chr1_1:8084951-8084970 | None:intergenic | 35.0% | |
| CTAACTCAACCTTACAAAAC+CGG | - | chr1_1:8085066-8085085 | None:intergenic | 35.0% | |
| AGTATAATATCACGTGTCAG+AGG | + | chr1_1:8085233-8085252 | Msa0005450:intron | 35.0% | |
| ! | TTTTACAGTGAGGTTGCTAA+AGG | + | chr1_1:8085275-8085294 | Msa0005450:intron | 35.0% |
| GCTCAAATCTGTAATAACTG+TGG | - | chr1_1:8085408-8085427 | None:intergenic | 35.0% | |
| ACTAAACTAACCATGTTGGA+TGG | - | chr1_1:8085436-8085455 | None:intergenic | 35.0% | |
| CAGAACTAAACTAACCATGT+TGG | - | chr1_1:8085440-8085459 | None:intergenic | 35.0% | |
| !! | CAACATGGTTAGTTTAGTTC+TGG | + | chr1_1:8085438-8085457 | Msa0005450:intron | 35.0% |
| AACTACAGATGTTGCCAAAA+GGG | + | chr1_1:8085566-8085585 | Msa0005450:CDS | 35.0% | |
| CTTCCTTTATAAAGCCTGTT+CGG | + | chr1_1:8085646-8085665 | Msa0005450:CDS | 35.0% | |
| GCTATAAGAAGTCAAGAACA+TGG | - | chr1_1:8085683-8085702 | None:intergenic | 35.0% | |
| TCTTATAGCTATGGCATGAT+TGG | + | chr1_1:8085694-8085713 | Msa0005450:intron | 35.0% | |
| CGTCTCATTGTTGTCATAAA+TGG | - | chr1_1:8085866-8085885 | None:intergenic | 35.0% | |
| !! | AGCCATTTTCTTTCTTGCTA+AGG | + | chr1_1:8085893-8085912 | Msa0005450:intron | 35.0% |
| !! | GCCATTTTCTTTCTTGCTAA+GGG | + | chr1_1:8085894-8085913 | Msa0005450:intron | 35.0% |
| ACCCTTAGCAAGAAAGAAAA+TGG | - | chr1_1:8085898-8085917 | None:intergenic | 35.0% | |
| ! | TTTTCTTTCTTGCTAAGGGT+AGG | + | chr1_1:8085898-8085917 | Msa0005450:intron | 35.0% |
| ! | TGTATTGTCGACTACAATCT+TGG | + | chr1_1:8085923-8085942 | Msa0005450:intron | 35.0% |
| GCTCAGATTAACAATAGATG+TGG | - | chr1_1:8086019-8086038 | None:intergenic | 35.0% | |
| CATCTATTGTTAATCTGAGC+TGG | + | chr1_1:8086019-8086038 | Msa0005450:intron | 35.0% | |
| ! | ATATGATTGTTCATGGTGGA+TGG | + | chr1_1:8086088-8086107 | Msa0005450:intron | 35.0% |
| TATCTTCCGTAGTTAGCATA+TGG | + | chr1_1:8086140-8086159 | Msa0005450:intron | 35.0% | |
| ACTTCTCCATATGCTAACTA+CGG | - | chr1_1:8086149-8086168 | None:intergenic | 35.0% | |
| TCTTTAACTAAAGGCTCCAA+CGG | + | chr1_1:8086260-8086279 | Msa0005450:intron | 35.0% | |
| TGTTTGATTGGTATCTGCTT+TGG | + | chr1_1:8086441-8086460 | Msa0005450:intron | 35.0% | |
| GATGAACTAAGGAGAGATTT+AGG | + | chr1_1:8086559-8086578 | Msa0005450:CDS | 35.0% | |
| TCTTCCTGCTGTATTATTGA+TGG | + | chr1_1:8086594-8086613 | Msa0005450:CDS | 35.0% | |
| CTTCCTGCTGTATTATTGAT+GGG | + | chr1_1:8086595-8086614 | Msa0005450:CDS | 35.0% | |
| TTCCTGCTGTATTATTGATG+GGG | + | chr1_1:8086596-8086615 | Msa0005450:CDS | 35.0% | |
| TAGTGTATCAATACCTTCAC+TGG | - | chr1_1:8086772-8086791 | None:intergenic | 35.0% | |
| ! | ATAGACTGTTGTCTAGTCTT+AGG | + | chr1_1:8086856-8086875 | Msa0005450:intron | 35.0% |
| ! | ATACTCTTATTTAGGACGGT+GGG | - | chr1_1:8087006-8087025 | None:intergenic | 35.0% |
| ! | AATACTCTTATTTAGGACGG+TGG | - | chr1_1:8087007-8087026 | None:intergenic | 35.0% |
| AAAAAATGGAGTAGACGAGT+AGG | + | chr1_1:8087032-8087051 | Msa0005450:intron | 35.0% | |
| ! | GTTTTCTTTCTTATGGGTCA+AGG | + | chr1_1:8087259-8087278 | Msa0005450:intron | 35.0% |
| AATCCCATGACCTAAAACAT+TGG | - | chr1_1:8087347-8087366 | None:intergenic | 35.0% | |
| ! | TCCCATGCATTCTTCAATTT+TGG | - | chr1_1:8087375-8087394 | None:intergenic | 35.0% |
| CATCAACAACTGTCATAATG+AGG | - | chr1_1:8087455-8087474 | None:intergenic | 35.0% | |
| CTCATTATGACAGTTGTTGA+TGG | + | chr1_1:8087453-8087472 | Msa0005450:intron | 35.0% | |
| !!! | TTTTTGTTGCTTTTGTAGGC+TGG | + | chr1_1:8087483-8087502 | Msa0005450:intron | 35.0% |
| AAAAATTCATGACAAGGTCG+AGG | - | chr1_1:8087605-8087624 | None:intergenic | 35.0% | |
| !! | AAAGTTAGCTTGCACTATTG+TGG | + | chr1_1:8087635-8087654 | Msa0005450:intron | 35.0% |
| AATTTCAGAGTTGCAAGTTG+TGG | + | chr1_1:8087673-8087692 | Msa0005450:intron | 35.0% | |
| ACTATAGCACTGTTATGCAA+CGG | - | chr1_1:8087728-8087747 | None:intergenic | 35.0% | |
| ! | GTGTTGTTAAATAGTGGCTA+TGG | - | chr1_1:8087841-8087860 | None:intergenic | 35.0% |
| TAGCCACTATTTAACAACAC+TGG | + | chr1_1:8087841-8087860 | Msa0005450:intron | 35.0% | |
| CACAACCATATTCAATCACT+TGG | - | chr1_1:8087970-8087989 | None:intergenic | 35.0% | |
| ! | TTTCCTTTGATTTCAGGAAG+CGG | + | chr1_1:8088001-8088020 | Msa0005450:intron | 35.0% |
| GTTCCCTATGTTGTTGAAAA+TGG | + | chr1_1:8088029-8088048 | Msa0005450:CDS | 35.0% | |
| ! | ACAATTTTCGCTATCTCCTT+AGG | - | chr1_1:8088077-8088096 | None:intergenic | 35.0% |
| !!! | GGACATTGCTTTTAGTTCAT+CGG | - | chr1_1:8088123-8088142 | None:intergenic | 35.0% |
| AAAAATGTGAAAGGCAGCAA+AGG | + | chr1_1:8088292-8088311 | Msa0005450:three_prime_UTR | 35.0% | |
| ! | CCCAATGCGGTTTTTGAATT+AGG | + | chr1_1:8082904-8082923 | Msa0005450:CDS | 40.0% |
| !! | GTGAACATGCTTCTGAAGTT+AGG | - | chr1_1:8082975-8082994 | None:intergenic | 40.0% |
| GTGTGAGGTTGTTGAAGTAA+AGG | - | chr1_1:8083020-8083039 | None:intergenic | 40.0% | |
| CTCAGTTTAAACAATAGCGG+TGG | + | chr1_1:8083072-8083091 | Msa0005450:CDS | 40.0% | |
| AGTTTAAACAATAGCGGTGG+TGG | + | chr1_1:8083075-8083094 | Msa0005450:CDS | 40.0% | |
| TGATGTGGAAGATGAAGGAT+TGG | + | chr1_1:8083254-8083273 | Msa0005450:CDS | 40.0% | |
| GATGTGGAAGATGAAGGATT+GGG | + | chr1_1:8083255-8083274 | Msa0005450:CDS | 40.0% | |
| AGTGTGTGGTTTCTATGTCA+GGG | - | chr1_1:8083587-8083606 | None:intergenic | 40.0% | |
| !! | TGATCAGAAGTGTCTGTGTT+AGG | + | chr1_1:8083635-8083654 | Msa0005450:intron | 40.0% |
| !! | GGTGCTTTTGTTTAAGAGCA+AGG | + | chr1_1:8083678-8083697 | Msa0005450:intron | 40.0% |
| ! | TCGATTCTGGTTAAAAGTGG+GGG | + | chr1_1:8083898-8083917 | Msa0005450:intron | 40.0% |
| GTCATGGAATGTTACTGTGA+AGG | + | chr1_1:8084026-8084045 | Msa0005450:intron | 40.0% | |
| !! | CTTTGGAGTTAATGCTATGC+AGG | + | chr1_1:8084112-8084131 | Msa0005450:intron | 40.0% |
| TGTGTGCTCAGACCATAAAT+CGG | - | chr1_1:8084147-8084166 | None:intergenic | 40.0% | |
| TTGACTGATGAACTAGACGT+GGG | - | chr1_1:8084256-8084275 | None:intergenic | 40.0% | |
| TTTGACTGATGAACTAGACG+TGG | - | chr1_1:8084257-8084276 | None:intergenic | 40.0% | |
| !! | TTCATAGCTCGGTGAGATTT+TGG | + | chr1_1:8084296-8084315 | Msa0005450:intron | 40.0% |
| GTGACTCATACATGAAAGTC+AGG | + | chr1_1:8084425-8084444 | Msa0005450:intron | 40.0% | |
| ! | ATGAAAGTCAGGGCATTAAC+TGG | + | chr1_1:8084436-8084455 | Msa0005450:intron | 40.0% |
| AATATTGCCAAGTTACCGTG+CGG | - | chr1_1:8084696-8084715 | None:intergenic | 40.0% | |
| ! | CACGGTTCGGATTTGATATT+TGG | + | chr1_1:8084720-8084739 | Msa0005450:intron | 40.0% |
| TGCAACTGCAGGTAATAAGA+GGG | - | chr1_1:8084788-8084807 | None:intergenic | 40.0% | |
| TTGCAACTGCAGGTAATAAG+AGG | - | chr1_1:8084789-8084808 | None:intergenic | 40.0% | |
| CTTCCACATTGGATGAGATT+AGG | + | chr1_1:8084813-8084832 | Msa0005450:intron | 40.0% | |
| CCCGCAAACATCTTTATATG+TGG | + | chr1_1:8084836-8084855 | Msa0005450:intron | 40.0% | |
| ATCTTAGAACTTGAGGCAAG+AGG | - | chr1_1:8084868-8084887 | None:intergenic | 40.0% | |
| AGAGCCTATTCAAGGTCTAT+TGG | + | chr1_1:8084894-8084913 | Msa0005450:intron | 40.0% | |
| GAGCCTATTCAAGGTCTATT+GGG | + | chr1_1:8084895-8084914 | Msa0005450:intron | 40.0% | |
| ! | CACGCTCTAGATTTGACAAA+TGG | - | chr1_1:8084958-8084977 | None:intergenic | 40.0% |
| ! | TTGTCAAATCTAGAGCGTGA+AGG | + | chr1_1:8084959-8084978 | Msa0005450:intron | 40.0% |
| ! | TGTCAAATCTAGAGCGTGAA+GGG | + | chr1_1:8084960-8084979 | Msa0005450:intron | 40.0% |
| !! | CGGTTTTGTAAGGTTGAGTT+AGG | + | chr1_1:8085064-8085083 | Msa0005450:intron | 40.0% |
| !!! | TCTTCGCATTTTGAGGTCAA+GGG | + | chr1_1:8085358-8085377 | Msa0005450:CDS | 40.0% |
| ! | CTTTTGGCAACATCTGTAGT+TGG | - | chr1_1:8085567-8085586 | None:intergenic | 40.0% |
| CAACTACAGATGTTGCCAAA+AGG | + | chr1_1:8085565-8085584 | Msa0005450:CDS | 40.0% | |
| TAAAGGAAGGTCTAACAGGT+AGG | - | chr1_1:8085635-8085654 | None:intergenic | 40.0% | |
| ! | CGAACAGGCTTTATAAAGGA+AGG | - | chr1_1:8085648-8085667 | None:intergenic | 40.0% |
| TCAAGAACATGGCATACCTT+TGG | - | chr1_1:8085672-8085691 | None:intergenic | 40.0% | |
| ! | GAGAGATCAGACTTGATAAC+TGG | + | chr1_1:8086053-8086072 | Msa0005450:intron | 40.0% |
| GCAGATACCAATCAAACACA+TGG | - | chr1_1:8086439-8086458 | None:intergenic | 40.0% | |
| GATTGTCGAGCTTCTCTAAT+AGG | + | chr1_1:8086537-8086556 | Msa0005450:intron | 40.0% | |
| ACTAAGGAGAGATTTAGGGA+TGG | + | chr1_1:8086564-8086583 | Msa0005450:CDS | 40.0% | |
| TCCTGCTGTATTATTGATGG+GGG | + | chr1_1:8086597-8086616 | Msa0005450:CDS | 40.0% | |
| ATCACAAGAATCTGACCTGT+GGG | - | chr1_1:8086694-8086713 | None:intergenic | 40.0% | |
| TGATTGGAAGATTCCAGTGA+AGG | + | chr1_1:8086756-8086775 | Msa0005450:CDS | 40.0% | |
| TGATACACTAATTGTTCCGG+CGG | + | chr1_1:8086782-8086801 | Msa0005450:intron | 40.0% | |
| TCAAGTAAAATCACAACCGC+CGG | - | chr1_1:8086801-8086820 | None:intergenic | 40.0% | |
| CTCACACTAGAAACTTTGCT+AGG | - | chr1_1:8087143-8087162 | None:intergenic | 40.0% | |
| TACGCCCAAGTGATTGAATA+TGG | + | chr1_1:8087962-8087981 | Msa0005450:intron | 40.0% | |
| ! | TTCCTTTGATTTCAGGAAGC+GGG | + | chr1_1:8088002-8088021 | Msa0005450:intron | 40.0% |
| GGAGATAGCGAAAATTGTTG+CGG | + | chr1_1:8088079-8088098 | Msa0005450:CDS | 40.0% | |
| !! | AAAATTGTTGCGGACTGGTT+TGG | + | chr1_1:8088089-8088108 | Msa0005450:CDS | 40.0% |
| !!! | GCTTTTAGTTCATCGGCTTT+TGG | - | chr1_1:8088116-8088135 | None:intergenic | 40.0% |
| TGCATTAAAACTAGCAAGGC+CGG | + | chr1_1:8088148-8088167 | Msa0005450:CDS | 40.0% | |
| GTACAGCTTAATCAACACTG+AGG | + | chr1_1:8088243-8088262 | Msa0005450:exon | 40.0% | |
| ! | TCTTTTGTAACACGCGTAGC+TGG | - | chr1_1:8082883-8082902 | None:intergenic | 45.0% |
| ! | GCGGTGGTGGTTATAAGTTT+AGG | + | chr1_1:8083088-8083107 | Msa0005450:CDS | 45.0% |
| CTGTTAGGGTTCATTGTGAG+AGG | + | chr1_1:8083136-8083155 | Msa0005450:CDS | 45.0% | |
| CATTGTGAGAGGATTCCGAT+TGG | + | chr1_1:8083147-8083166 | Msa0005450:CDS | 45.0% | |
| !! | GGAATGGTGTTGGTGGAAAT+GGG | + | chr1_1:8083223-8083242 | Msa0005450:CDS | 45.0% |
| ! | GTGTTGGTGGAAATGGGAAT+CGG | + | chr1_1:8083229-8083248 | Msa0005450:CDS | 45.0% |
| ! | TGTTGGTGGAAATGGGAATC+GGG | + | chr1_1:8083230-8083249 | Msa0005450:CDS | 45.0% |
| !! | AAATGGGAATCGGGTTGATG+TGG | + | chr1_1:8083239-8083258 | Msa0005450:CDS | 45.0% |
| GAAGGATTGGGATTGAAGAG+TGG | + | chr1_1:8083267-8083286 | Msa0005450:CDS | 45.0% | |
| ATTGGGATTGAAGAGTGGTG+AGG | + | chr1_1:8083272-8083291 | Msa0005450:CDS | 45.0% | |
| TTGGGATTGAAGAGTGGTGA+GGG | + | chr1_1:8083273-8083292 | Msa0005450:CDS | 45.0% | |
| TGAGGGGAAGAAAGTGAAGA+AGG | + | chr1_1:8083290-8083309 | Msa0005450:CDS | 45.0% | |
| TTGATGAGTGATACTGGTGG+TGG | + | chr1_1:8083321-8083340 | Msa0005450:intron | 45.0% | |
| CAGTGTGTGGTTTCTATGTC+AGG | - | chr1_1:8083588-8083607 | None:intergenic | 45.0% | |
| GTTAAAAGTGGGGGCTAACT+TGG | + | chr1_1:8083907-8083926 | Msa0005450:intron | 45.0% | |
| GGAATTTGATTGAACGGCCA+AGG | - | chr1_1:8084170-8084189 | None:intergenic | 45.0% | |
| TAGTAGGTCATCCTCCACAA+CGG | - | chr1_1:8084224-8084243 | None:intergenic | 45.0% | |
| TTGTGGAGGATGACCTACTA+TGG | + | chr1_1:8084224-8084243 | Msa0005450:CDS | 45.0% | |
| GAGGATGACCTACTATGGAA+CGG | + | chr1_1:8084229-8084248 | Msa0005450:CDS | 45.0% | |
| TGACTGATGAACTAGACGTG+GGG | - | chr1_1:8084255-8084274 | None:intergenic | 45.0% | |
| GAACTGGATTTCTCTAGTGG+TGG | + | chr1_1:8084548-8084567 | Msa0005450:intron | 45.0% | |
| AAAATGACCGCACGGTAACT+TGG | + | chr1_1:8084686-8084705 | Msa0005450:intron | 45.0% | |
| GGCAATATTTCAGCACGGTT+CGG | + | chr1_1:8084707-8084726 | Msa0005450:intron | 45.0% | |
| GTTGCAATGTGCTTCCACAT+TGG | + | chr1_1:8084802-8084821 | Msa0005450:intron | 45.0% | |
| TGGCCCAATAGACCTTGAAT+AGG | - | chr1_1:8084901-8084920 | None:intergenic | 45.0% | |
| CTATCATGTCTCCCACTACT+GGG | + | chr1_1:8084925-8084944 | Msa0005450:intron | 45.0% | |
| GTTTGTCAAGAGTCCCACAT+TGG | + | chr1_1:8084984-8085003 | Msa0005450:intron | 45.0% | |
| ! | ACGTTCCTCTTCGCATTTTG+AGG | + | chr1_1:8085351-8085370 | Msa0005450:CDS | 45.0% |
| CTTGACCTCAAAATGCGAAG+AGG | - | chr1_1:8085359-8085378 | None:intergenic | 45.0% | |
| !!! | CTCTTCGCATTTTGAGGTCA+AGG | + | chr1_1:8085357-8085376 | Msa0005450:CDS | 45.0% |
| !!! | CTTCGCATTTTGAGGTCAAG+GGG | + | chr1_1:8085359-8085378 | Msa0005450:CDS | 45.0% |
| TGTTGCCAAAAGGGCAATGA+AGG | + | chr1_1:8085575-8085594 | Msa0005450:CDS | 45.0% | |
| ! | TGGCCGAACAGGCTTTATAA+AGG | - | chr1_1:8085652-8085671 | None:intergenic | 45.0% |
| TATAAAGCCTGTTCGGCCAA+AGG | + | chr1_1:8085653-8085672 | Msa0005450:CDS | 45.0% | |
| ATCAAGTCTGATCTCTCCCT+AGG | - | chr1_1:8086050-8086069 | None:intergenic | 45.0% | |
| TGGTATCTGCTTTGGCTGAT+TGG | + | chr1_1:8086449-8086468 | Msa0005450:intron | 45.0% | |
| GAGAGATTTAGGGATGGATG+AGG | + | chr1_1:8086570-8086589 | Msa0005450:CDS | 45.0% | |
| CCTGCTGTATTATTGATGGG+GGG | + | chr1_1:8086598-8086617 | Msa0005450:CDS | 45.0% | |
| GATCACAAGAATCTGACCTG+TGG | - | chr1_1:8086695-8086714 | None:intergenic | 45.0% | |
| GGTCAGATTCTTGTGATCTG+TGG | + | chr1_1:8086697-8086716 | Msa0005450:CDS | 45.0% | |
| GGTCAAGGTAGAAGATGTCT+GGG | + | chr1_1:8087274-8087293 | Msa0005450:intron | 45.0% | |
| GTCAAGGTAGAAGATGTCTG+GGG | + | chr1_1:8087275-8087294 | Msa0005450:intron | 45.0% | |
| AAGGTTGGATCTCATTGTCG+CGG | + | chr1_1:8087416-8087435 | Msa0005450:intron | 45.0% | |
| AAATGATTACATTGCCGGGC+AGG | + | chr1_1:8087554-8087573 | Msa0005450:CDS | 45.0% | |
| TTCATGACAAGGTCGAGGAA+TGG | - | chr1_1:8087600-8087619 | None:intergenic | 45.0% | |
| GCTATGGCAGTAGAGCATAT+AGG | - | chr1_1:8087825-8087844 | None:intergenic | 45.0% | |
| TAGCGAAAATTGTTGCGGAC+TGG | + | chr1_1:8088084-8088103 | Msa0005450:CDS | 45.0% | |
| TTACTAGCTCGTGCATGTCA+TGG | - | chr1_1:8088193-8088212 | None:intergenic | 45.0% | |
| AATGTGAAAGGCAGCAAAGG+TGG | + | chr1_1:8088295-8088314 | Msa0005450:three_prime_UTR | 45.0% | |
| CTTCAACAACCTCACACGTG+TGG | + | chr1_1:8083023-8083042 | Msa0005450:CDS | 50.0% | |
| ! | ATGATGATGCCACACGTGTG+AGG | - | chr1_1:8083035-8083054 | None:intergenic | 50.0% |
| !! | GGGAATGGTGTTGGTGGAAA+TGG | + | chr1_1:8083222-8083241 | Msa0005450:CDS | 50.0% |
| !! | CGGGTTGATGTGGAAGATGA+AGG | + | chr1_1:8083249-8083268 | Msa0005450:CDS | 50.0% |
| TGGGATTGAAGAGTGGTGAG+GGG | + | chr1_1:8083274-8083293 | Msa0005450:CDS | 50.0% | |
| AGAAACCACACACTGACACG+TGG | + | chr1_1:8083593-8083612 | Msa0005450:intron | 50.0% | |
| TATGGTCTGAGCACACACCT+TGG | + | chr1_1:8084150-8084169 | Msa0005450:CDS | 50.0% | |
| TGGTGAAACATGGACCGTTG+TGG | + | chr1_1:8084207-8084226 | Msa0005450:CDS | 50.0% | |
| TGAAACATGGACCGTTGTGG+AGG | + | chr1_1:8084210-8084229 | Msa0005450:CDS | 50.0% | |
| ! | TGGAAGCACATTGCAACTGC+AGG | - | chr1_1:8084799-8084818 | None:intergenic | 50.0% |
| GGGCCTAATCTCATCCAATG+TGG | - | chr1_1:8084819-8084838 | None:intergenic | 50.0% | |
| ! | GTAGTGGGAGACATGATAGC+TGG | - | chr1_1:8084924-8084943 | None:intergenic | 50.0% |
| GCTATCATGTCTCCCACTAC+TGG | + | chr1_1:8084924-8084943 | Msa0005450:intron | 50.0% | |
| !! | AAAACCGGCTTGCAAGGTGA+GGG | - | chr1_1:8085051-8085070 | None:intergenic | 50.0% |
| !! | CCTTACAAAACCGGCTTGCA+AGG | - | chr1_1:8085057-8085076 | None:intergenic | 50.0% |
| !! | CCTTGCAAGCCGGTTTTGTA+AGG | + | chr1_1:8085054-8085073 | Msa0005450:intron | 50.0% |
| AGAGGAACGTGTTGCATCAG+TGG | - | chr1_1:8085341-8085360 | None:intergenic | 50.0% | |
| TGAGCACATGCCATCCAACA+TGG | + | chr1_1:8085423-8085442 | Msa0005450:CDS | 50.0% | |
| ! | TCCAGCCTTCATTGCCCTTT+TGG | - | chr1_1:8085583-8085602 | None:intergenic | 50.0% |
| AGTCTGATCTCTCCCTAGGT+GGG | - | chr1_1:8086046-8086065 | None:intergenic | 50.0% | |
| AAGTCTGATCTCTCCCTAGG+TGG | - | chr1_1:8086047-8086066 | None:intergenic | 50.0% | |
| CCCCCCATCAATAATACAGC+AGG | - | chr1_1:8086601-8086620 | None:intergenic | 50.0% | |
| GCTGTATTATTGATGGGGGG+AGG | + | chr1_1:8086601-8086620 | Msa0005450:CDS | 50.0% | |
| TTATTGATGGGGGGAGGTGA+AGG | + | chr1_1:8086607-8086626 | Msa0005450:CDS | 50.0% | |
| GTCCCATTGAAGCTACTGCT+CGG | + | chr1_1:8086635-8086654 | Msa0005450:CDS | 50.0% | |
| TCCCATTGAAGCTACTGCTC+GGG | + | chr1_1:8086636-8086655 | Msa0005450:CDS | 50.0% | |
| GGGTCAAGGTAGAAGATGTC+TGG | + | chr1_1:8087273-8087292 | Msa0005450:intron | 50.0% | |
| ATTGCAGAGGCCATGATTCG+AGG | + | chr1_1:8087516-8087535 | Msa0005450:CDS | 50.0% | |
| AATAGGCAGGCCTCGAATCA+TGG | - | chr1_1:8087529-8087548 | None:intergenic | 50.0% | |
| TGAGAACCACATTACCTGCC+CGG | - | chr1_1:8087571-8087590 | None:intergenic | 50.0% | |
| TGCCCGCTTCCTGAAATCAA+AGG | - | chr1_1:8088007-8088026 | None:intergenic | 50.0% | |
| TCCGATTGGATTCGCTTCGC+TGG | + | chr1_1:8083161-8083180 | Msa0005450:CDS | 55.0% | |
| CCCAGCGAAGCGAATCCAAT+CGG | - | chr1_1:8083165-8083184 | None:intergenic | 55.0% | |
| CCGATTGGATTCGCTTCGCT+GGG | + | chr1_1:8083162-8083181 | Msa0005450:CDS | 55.0% | |
| !! | GCTTCGCTGGGAGTTGATGA+CGG | + | chr1_1:8083174-8083193 | Msa0005450:CDS | 55.0% |
| GTGGGAGACATGATAGCTGG+TGG | - | chr1_1:8084921-8084940 | None:intergenic | 55.0% | |
| ATGGAGCATGGCCCAGTAGT+GGG | - | chr1_1:8084939-8084958 | None:intergenic | 55.0% | |
| AATGGAGCATGGCCCAGTAG+TGG | - | chr1_1:8084940-8084959 | None:intergenic | 55.0% | |
| !! | CAAAACCGGCTTGCAAGGTG+AGG | - | chr1_1:8085052-8085071 | None:intergenic | 55.0% |
| GCCAAAAGGGCAATGAAGGC+TGG | + | chr1_1:8085579-8085598 | Msa0005450:CDS | 55.0% | |
| TGGCATACCTTTGGCCGAAC+AGG | - | chr1_1:8085663-8085682 | None:intergenic | 55.0% | |
| AATCTGAGCTGGTCCCACCT+AGG | + | chr1_1:8086030-8086049 | Msa0005450:intron | 55.0% | |
| ATCTGAGCTGGTCCCACCTA+GGG | + | chr1_1:8086031-8086050 | Msa0005450:intron | 55.0% | |
| GCCCGAGCAGTAGCTTCAAT+GGG | - | chr1_1:8086640-8086659 | None:intergenic | 55.0% | |
| TGCCCGAGCAGTAGCTTCAA+TGG | - | chr1_1:8086641-8086660 | None:intergenic | 55.0% | |
| !! | TTGCTTTTGTAGGCTGGCCC+AGG | + | chr1_1:8087489-8087508 | Msa0005450:intron | 55.0% |
| !! | TGCTTTTGTAGGCTGGCCCA+GGG | + | chr1_1:8087490-8087509 | Msa0005450:intron | 55.0% |
| TGGCCTCTGCAATTGTCCCT+GGG | - | chr1_1:8087509-8087528 | None:intergenic | 55.0% | |
| ATGGCCTCTGCAATTGTCCC+TGG | - | chr1_1:8087510-8087529 | None:intergenic | 55.0% | |
| ACATTGCCGGGCAGGTAATG+TGG | + | chr1_1:8087562-8087581 | Msa0005450:intron | 55.0% | |
| !! | TCGCTGGGAGTTGATGACGG+TGG | + | chr1_1:8083177-8083196 | Msa0005450:CDS | 60.0% |
| !! | CTGGGAGTTGATGACGGTGG+TGG | + | chr1_1:8083180-8083199 | Msa0005450:CDS | 60.0% |
| !! | GGAGTTGATGACGGTGGTGG+TGG | + | chr1_1:8083183-8083202 | Msa0005450:CDS | 60.0% |
| !! | GTTGATGACGGTGGTGGTGG+TGG | + | chr1_1:8083186-8083205 | Msa0005450:CDS | 60.0% |
| !! | TGGTGGTGGTGTTGGTGGTG+AGG | + | chr1_1:8083200-8083219 | Msa0005450:CDS | 60.0% |
| !! | GGTGGTGGTGTTGGTGGTGA+GGG | + | chr1_1:8083201-8083220 | Msa0005450:CDS | 60.0% |
| !! | GTGGTGGTGTTGGTGGTGAG+GGG | + | chr1_1:8083202-8083221 | Msa0005450:CDS | 60.0% |
| !! | GGTGTTGGTGGTGAGGGGAA+TGG | + | chr1_1:8083207-8083226 | Msa0005450:CDS | 60.0% |
| GGTGGTGAGGGGAATGGTGT+TGG | + | chr1_1:8083213-8083232 | Msa0005450:CDS | 60.0% | |
| ! | GGTGAGGGGAATGGTGTTGG+TGG | + | chr1_1:8083216-8083235 | Msa0005450:CDS | 60.0% |
| GTCTGCCACGTGTCAGTGTG+TGG | - | chr1_1:8083601-8083620 | None:intergenic | 60.0% | |
| CACTGACACGTGGCAGACAC+TGG | + | chr1_1:8083603-8083622 | Msa0005450:intron | 60.0% | |
| ACGTGGGGCCGTTCCATAGT+AGG | - | chr1_1:8084240-8084259 | None:intergenic | 60.0% | |
| ! | ATGGGGGGAGGTGAAGGCAT+GGG | + | chr1_1:8086613-8086632 | Msa0005450:CDS | 60.0% |
| GAAGCTACTGCTCGGGCACT+TGG | + | chr1_1:8086643-8086662 | Msa0005450:CDS | 60.0% | |
| AATGACGAGGGGGTTCCCAC+AGG | + | chr1_1:8086676-8086695 | Msa0005450:CDS | 60.0% | |
| TGGCCCAGGGACAATTGCAG+AGG | + | chr1_1:8087503-8087522 | Msa0005450:CDS | 60.0% | |
| !! | GACGGTGGTGGTGGTGGTGT+TGG | + | chr1_1:8083192-8083211 | Msa0005450:CDS | 65.0% |
| !! | GGTGGTGGTGGTGGTGTTGG+TGG | + | chr1_1:8083195-8083214 | Msa0005450:CDS | 65.0% |
| GCGTCCCTCACCTTGCAAGC+CGG | + | chr1_1:8085044-8085063 | Msa0005450:intron | 65.0% | |
| GATGGGGGGAGGTGAAGGCA+TGG | + | chr1_1:8086612-8086631 | Msa0005450:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 8082871 | 8088417 | 8082871 | ID=Msa0005450;Name=Msa0005450 |
| chr1_1 | mRNA | 8082871 | 8088417 | 8082871 | ID=Msa0005450-mRNA-1;Parent=Msa0005450;Name=Msa0005450-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0.85|0.87|1|1|1|8|164|503 |
| chr1_1 | exon | 8082871 | 8083311 | 8082871 | ID=Msa0005450-mRNA-1:exon:2849;Parent=Msa0005450-mRNA-1 |
| chr1_1 | exon | 8084134 | 8084306 | 8084134 | ID=Msa0005450-mRNA-1:exon:2850;Parent=Msa0005450-mRNA-1 |
| chr1_1 | exon | 8085283 | 8085444 | 8085283 | ID=Msa0005450-mRNA-1:exon:2851;Parent=Msa0005450-mRNA-1 |
| chr1_1 | exon | 8085533 | 8085674 | 8085533 | ID=Msa0005450-mRNA-1:exon:2852;Parent=Msa0005450-mRNA-1 |
| chr1_1 | exon | 8086559 | 8086777 | 8086559 | ID=Msa0005450-mRNA-1:exon:2853;Parent=Msa0005450-mRNA-1 |
| chr1_1 | exon | 8087356 | 8087418 | 8087356 | ID=Msa0005450-mRNA-1:exon:2854;Parent=Msa0005450-mRNA-1 |
| chr1_1 | exon | 8087501 | 8087575 | 8087501 | ID=Msa0005450-mRNA-1:exon:2855;Parent=Msa0005450-mRNA-1 |
| chr1_1 | exon | 8088017 | 8088417 | 8088017 | ID=Msa0005450-mRNA-1:exon:2856;Parent=Msa0005450-mRNA-1 |
| chr1_1 | CDS | 8082871 | 8083311 | 8082871 | ID=Msa0005450-mRNA-1:cds;Parent=Msa0005450-mRNA-1 |
| chr1_1 | CDS | 8084134 | 8084306 | 8084134 | ID=Msa0005450-mRNA-1:cds;Parent=Msa0005450-mRNA-1 |
| chr1_1 | CDS | 8085283 | 8085444 | 8085283 | ID=Msa0005450-mRNA-1:cds;Parent=Msa0005450-mRNA-1 |
| chr1_1 | CDS | 8085533 | 8085674 | 8085533 | ID=Msa0005450-mRNA-1:cds;Parent=Msa0005450-mRNA-1 |
| chr1_1 | CDS | 8086559 | 8086777 | 8086559 | ID=Msa0005450-mRNA-1:cds;Parent=Msa0005450-mRNA-1 |
| chr1_1 | CDS | 8087356 | 8087418 | 8087356 | ID=Msa0005450-mRNA-1:cds;Parent=Msa0005450-mRNA-1 |
| chr1_1 | CDS | 8087501 | 8087575 | 8087501 | ID=Msa0005450-mRNA-1:cds;Parent=Msa0005450-mRNA-1 |
| chr1_1 | CDS | 8088017 | 8088253 | 8088017 | ID=Msa0005450-mRNA-1:cds;Parent=Msa0005450-mRNA-1 |
| chr1_1 | three_prime_UTR | 8088254 | 8088417 | 8088254 | ID=Msa0005450-mRNA-1:three_prime_utr;Parent=Msa0005450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
