Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0086020 | XP_024642059.1 | 98.840 | 431 | 5 | 0 | 1 | 431 | 1 | 431 | 0.0 | 891 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0086020 | sp|Q75HX5|TLP8_ORYSJ | 75.111 | 450 | 88 | 8 | 1 | 431 | 1 | 445 | 0.0 | 650 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0086020 | G7ICY3 | 98.840 | 431 | 5 | 0 | 1 | 431 | 1 | 431 | 0.0 | 891 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0086020 | TF | TUB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003470 | Msa0086020 | -0.859005 | 5.576254e-63 | -8.615850e-47 |
| Msa0005450 | Msa0086020 | -0.818810 | 1.614294e-52 | -8.615850e-47 |
| Msa0030310 | Msa0086020 | -0.818164 | 2.261038e-52 | -8.615850e-47 |
| Msa0043680 | Msa0086020 | -0.804419 | 2.180022e-49 | -8.615850e-47 |
| Msa0054170 | Msa0086020 | -0.833867 | 4.166109e-56 | -8.615850e-47 |
| Msa0086020 | Msa0146470 | -0.862724 | 4.138920e-64 | -8.615850e-47 |
| Msa0086020 | Msa0169620 | -0.802007 | 6.879849e-49 | -8.615850e-47 |
| Msa0086020 | Msa0259330 | -0.807935 | 3.963069e-50 | -8.615850e-47 |
| Msa0086020 | Msa0275400 | 0.812918 | 3.329235e-51 | -8.615850e-47 |
| Msa0086020 | Msa0417630 | -0.830195 | 3.367157e-55 | -8.615850e-47 |
| Msa0086020 | Msa0469910 | 0.815579 | 8.600167e-52 | -8.615850e-47 |
| Msa0086020 | Msa0503280 | 0.801600 | 8.340137e-49 | -8.615850e-47 |
| Msa0086020 | Msa0575990 | 0.831084 | 2.039479e-55 | -8.615850e-47 |
| Msa0086020 | Msa0576100 | 0.828099 | 1.085029e-54 | -8.615850e-47 |
| Msa0086020 | Msa0642650 | -0.811567 | 6.562224e-51 | -8.615850e-47 |
| Msa0086020 | Msa0734000 | -0.837954 | 3.830561e-57 | -8.615850e-47 |
| Msa0086020 | Msa0738880 | -0.806911 | 6.534616e-50 | -8.615850e-47 |
| Msa0086020 | Msa0781490 | 0.800662 | 1.297393e-48 | -8.615850e-47 |
| Msa0086020 | Msa0783290 | -0.809432 | 1.898191e-50 | -8.615850e-47 |
| Msa0086020 | Msa0819320 | -0.809441 | 1.889763e-50 | -8.615850e-47 |
| Msa0086020 | Msa0819370 | -0.808716 | 2.701137e-50 | -8.615850e-47 |
| Msa0086020 | Msa0844530 | -0.839588 | 1.448814e-57 | -8.615850e-47 |
| Msa0086020 | Msa0900320 | -0.827046 | 1.941655e-54 | -8.615850e-47 |
| Msa0086020 | Msa0942730 | -0.802263 | 6.095941e-49 | -8.615850e-47 |
| Msa0086020 | Msa0956520 | 0.813317 | 2.721170e-51 | -8.615850e-47 |
| Msa0086020 | Msa0958020 | -0.820131 | 8.064687e-53 | -8.615850e-47 |
| Msa0086020 | Msa0965960 | -0.840515 | 8.301297e-58 | -8.615850e-47 |
| Msa0086020 | Msa1085590 | 0.832471 | 9.277553e-56 | -8.615850e-47 |
| Msa0086020 | Msa1223840 | -0.801281 | 9.694108e-49 | -8.615850e-47 |
| Msa0086020 | Msa1246530 | 0.806860 | 6.700878e-50 | -8.615850e-47 |
| Msa0086020 | Msa1252460 | 0.838011 | 3.704144e-57 | -8.615850e-47 |
| Msa0086020 | Msa1263590 | -0.809112 | 2.222577e-50 | -8.615850e-47 |
| Msa0086020 | Msa1263670 | -0.803404 | 3.543591e-49 | -8.615850e-47 |
| Msa0086020 | Msa1353800 | -0.811797 | 5.849373e-51 | -8.615850e-47 |
| Msa0086020 | Msa1365870 | -0.805245 | 1.465055e-49 | -8.615850e-47 |
| Msa0086020 | Msa1367600 | -0.800328 | 1.517343e-48 | -8.615850e-47 |
| Msa0086020 | Msa1370670 | 0.804691 | 1.913014e-49 | -8.615850e-47 |
| Msa0086020 | Msa1381130 | -0.800396 | 1.469861e-48 | -8.615850e-47 |
| Msa0086020 | Msa1442220 | 0.807827 | 4.179041e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0086020 | MtrunA17_Chr1g0201891 | 98.840 | 431 | 5 | 0 | 1 | 431 | 1 | 431 | 0.0 | 891 |
| Msa0086020 | MtrunA17_Chr2g0278511 | 80.230 | 435 | 74 | 5 | 1 | 431 | 1 | 427 | 0.0 | 700 |
| Msa0086020 | MtrunA17_Chr2g0286441 | 58.073 | 384 | 137 | 5 | 48 | 431 | 34 | 393 | 1.44e-157 | 450 |
| Msa0086020 | MtrunA17_Chr5g0404321 | 53.864 | 440 | 170 | 12 | 1 | 431 | 1 | 416 | 2.74e-154 | 443 |
| Msa0086020 | MtrunA17_Chr8g0373001 | 51.708 | 439 | 177 | 13 | 1 | 431 | 1 | 412 | 4.61e-146 | 422 |
| Msa0086020 | MtrunA17_Chr1g0155301 | 48.690 | 458 | 172 | 9 | 1 | 431 | 1 | 422 | 1.45e-145 | 421 |
| Msa0086020 | MtrunA17_Chr1g0196071 | 50.343 | 437 | 176 | 10 | 1 | 431 | 1 | 402 | 7.25e-145 | 418 |
| Msa0086020 | MtrunA17_Chr2g0315641 | 47.520 | 383 | 150 | 6 | 50 | 431 | 39 | 371 | 1.93e-119 | 352 |
| Msa0086020 | MtrunA17_Chr2g0315651 | 43.117 | 385 | 163 | 10 | 51 | 431 | 35 | 367 | 1.71e-95 | 291 |
| Msa0086020 | MtrunA17_Chr8g0373361 | 43.091 | 427 | 196 | 14 | 15 | 424 | 9 | 405 | 6.41e-94 | 288 |
| Msa0086020 | MtrunA17_Chr8g0373331 | 35.862 | 435 | 181 | 17 | 1 | 424 | 1 | 348 | 3.00e-72 | 231 |
| Msa0086020 | MtrunA17_Chr1g0156151 | 46.544 | 217 | 97 | 6 | 1 | 207 | 1 | 208 | 1.46e-56 | 186 |
| Msa0086020 | MtrunA17_Chr8g0373351 | 31.969 | 391 | 133 | 12 | 48 | 423 | 14 | 286 | 1.63e-44 | 156 |
| Msa0086020 | MtrunA17_Chr8g0373341 | 34.221 | 263 | 116 | 7 | 1 | 235 | 1 | 234 | 1.89e-28 | 114 |
| Msa0086020 | MtrunA17_Chr8g0373341 | 45.098 | 102 | 41 | 3 | 322 | 421 | 232 | 320 | 1.25e-16 | 80.5 |
| Msa0086020 | MtrunA17_Chr3g0091401 | 40.816 | 98 | 51 | 2 | 96 | 193 | 9 | 99 | 3.89e-14 | 68.2 |
| Msa0086020 | MtrunA17_Chr2g0334041 | 36.207 | 116 | 47 | 4 | 321 | 430 | 265 | 359 | 2.88e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0086020 | AT1G76900.2 | 70.330 | 455 | 111 | 9 | 1 | 431 | 1 | 455 | 0.0 | 610 |
| Msa0086020 | AT1G76900.1 | 70.330 | 455 | 111 | 9 | 1 | 431 | 1 | 455 | 0.0 | 610 |
| Msa0086020 | AT1G76900.3 | 70.330 | 455 | 111 | 9 | 1 | 431 | 1 | 455 | 0.0 | 610 |
| Msa0086020 | AT1G43640.1 | 68.027 | 441 | 119 | 6 | 1 | 431 | 1 | 429 | 0.0 | 599 |
| Msa0086020 | AT1G25280.1 | 69.955 | 446 | 118 | 7 | 1 | 431 | 1 | 445 | 0.0 | 595 |
| Msa0086020 | AT1G43640.2 | 70.053 | 374 | 94 | 4 | 65 | 431 | 1 | 363 | 0.0 | 536 |
| Msa0086020 | AT2G47900.2 | 53.596 | 431 | 175 | 4 | 1 | 431 | 1 | 406 | 3.02e-165 | 471 |
| Msa0086020 | AT2G47900.1 | 53.596 | 431 | 175 | 4 | 1 | 431 | 1 | 406 | 3.02e-165 | 471 |
| Msa0086020 | AT2G47900.3 | 53.472 | 432 | 175 | 5 | 1 | 431 | 1 | 407 | 7.10e-164 | 467 |
| Msa0086020 | AT2G18280.2 | 53.288 | 441 | 148 | 12 | 1 | 431 | 1 | 393 | 3.83e-150 | 432 |
| Msa0086020 | AT2G18280.1 | 53.288 | 441 | 148 | 12 | 1 | 431 | 1 | 393 | 3.83e-150 | 432 |
| Msa0086020 | AT1G47270.3 | 51.270 | 433 | 164 | 6 | 1 | 431 | 1 | 388 | 7.32e-142 | 410 |
| Msa0086020 | AT1G47270.1 | 54.663 | 386 | 137 | 4 | 48 | 431 | 64 | 413 | 1.27e-141 | 411 |
| Msa0086020 | AT1G47270.2 | 54.663 | 386 | 137 | 4 | 48 | 431 | 63 | 412 | 1.47e-141 | 410 |
| Msa0086020 | AT5G18680.1 | 51.295 | 386 | 154 | 8 | 49 | 431 | 35 | 389 | 1.37e-130 | 382 |
| Msa0086020 | AT3G06380.1 | 51.706 | 381 | 149 | 9 | 53 | 431 | 33 | 380 | 4.86e-127 | 372 |
| Msa0086020 | AT1G25280.3 | 70.149 | 268 | 70 | 7 | 173 | 431 | 1 | 267 | 6.67e-123 | 358 |
| Msa0086020 | AT1G25280.2 | 70.149 | 268 | 70 | 7 | 173 | 431 | 1 | 267 | 6.67e-123 | 358 |
| Msa0086020 | AT1G53320.1 | 47.258 | 383 | 157 | 5 | 50 | 431 | 41 | 379 | 5.18e-118 | 349 |
| Msa0086020 | AT5G18680.2 | 52.174 | 322 | 121 | 7 | 112 | 431 | 7 | 297 | 4.30e-106 | 316 |
| Msa0086020 | AT3G06380.2 | 51.420 | 317 | 120 | 8 | 116 | 431 | 5 | 288 | 4.24e-99 | 298 |
| Msa0086020 | AT1G61940.2 | 55.814 | 86 | 38 | 0 | 56 | 141 | 1 | 86 | 2.93e-28 | 112 |
| Msa0086020 | AT1G61940.1 | 59.375 | 64 | 26 | 0 | 56 | 119 | 1 | 64 | 9.09e-20 | 88.6 |
Find 143 sgRNAs with CRISPR-Local
Find 256 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAATGAGCTCTGGCTGGCC+TGG | 0.187108 | 1_2:-66614434 | None:intergenic |
| ATACCCTCTCTCGGCCTTTC+AGG | 0.201509 | 1_2:+66614838 | Msa0086020:CDS |
| GCAGCATTGCTTGTTGAAAA+TGG | 0.220754 | 1_2:+66613638 | Msa0086020:intron |
| GTATTTGCTAAAACATAAAA+AGG | 0.249597 | 1_2:+66611679 | Msa0086020:five_prime_UTR |
| GGGCCATGTTCAAAAGAAAA+AGG | 0.265901 | 1_2:-66615080 | None:intergenic |
| CATCCTATGAATTCCTAAAA+TGG | 0.266277 | 1_2:-66614952 | None:intergenic |
| ATGTTGGTGCCTTAACTTTA+GGG | 0.281753 | 1_2:+66614637 | Msa0086020:CDS |
| AATGTTGGTGCCTTAACTTT+AGG | 0.285851 | 1_2:+66614636 | Msa0086020:CDS |
| CTTTCCGATGTAAGTGTTAC+TGG | 0.296608 | 1_2:-66613747 | None:intergenic |
| CTGTAGGTTCTCAGATATAA+TGG | 0.306980 | 1_2:+66614529 | Msa0086020:CDS |
| CTCACCTGCTTCAGAGAAAC+AGG | 0.315099 | 1_2:-66612806 | None:intergenic |
| TTAAATCATAACTTACATAA+AGG | 0.320718 | 1_2:-66615103 | None:intergenic |
| CCAAACTTCAATGATAAATA+AGG | 0.326259 | 1_2:-66611863 | None:intergenic |
| AAATCTGGGTCTGGAAGTTT+CGG | 0.334850 | 1_2:-66611529 | None:intergenic |
| GAATGAGCTCTGGCTGGCCT+GGG | 0.345465 | 1_2:-66614433 | None:intergenic |
| GCCAGCTGAGCATTGTTATA+GGG | 0.349030 | 1_2:-66614230 | None:intergenic |
| CATGGGCTGTTCTGTATAAC+TGG | 0.352285 | 1_2:-66612611 | None:intergenic |
| AGCCAGCTGAGCATTGTTAT+AGG | 0.353413 | 1_2:-66614231 | None:intergenic |
| TAAATCATAACTTACATAAA+GGG | 0.359283 | 1_2:-66615102 | None:intergenic |
| CCTTATTTATCATTGAAGTT+TGG | 0.367982 | 1_2:+66611863 | Msa0086020:five_prime_UTR |
| CGTGATGTGAGGGATGGATT+TGG | 0.379788 | 1_2:+66612497 | Msa0086020:CDS |
| GTCGCTCCTCATTCCGCAAC+AGG | 0.383537 | 1_2:+66614722 | Msa0086020:CDS |
| TCATTGAAGTTTGGTGTTTG+AGG | 0.387907 | 1_2:+66611872 | Msa0086020:five_prime_UTR |
| CTCTTCCTTTGCCTCAGTCC+TGG | 0.393245 | 1_2:+66613186 | Msa0086020:CDS |
| TTCCAATACACTGACAGTTT+CGG | 0.405986 | 1_2:-66612450 | None:intergenic |
| TTCCGAAACTGTCAGTGTAT+TGG | 0.407688 | 1_2:+66612448 | Msa0086020:five_prime_UTR |
| GAAAGAATCCTCAAGATTGC+GGG | 0.410283 | 1_2:-66614456 | None:intergenic |
| CTCTGTGCAAGTCGTTCTTC+TGG | 0.410800 | 1_2:-66613687 | None:intergenic |
| TACTTTACAATTTAACTATG+AGG | 0.421934 | 1_2:-66615008 | None:intergenic |
| TAACTGCCACTAGGGACCTT+TGG | 0.430993 | 1_2:-66614296 | None:intergenic |
| TATATTAGATGAAGAGAAAG+AGG | 0.431184 | 1_2:-66611423 | None:intergenic |
| TCGTGATGTTATTAAGAGAT+TGG | 0.435663 | 1_2:+66612658 | Msa0086020:CDS |
| TTTCCCTGTTTCTCTGAAGC+AGG | 0.440467 | 1_2:+66612802 | Msa0086020:CDS |
| GAATGAGGAGCGACAGGTGC+AGG | 0.442729 | 1_2:-66614713 | None:intergenic |
| TGCAGTTGTTCATGCCATCT+AGG | 0.445754 | 1_2:-66614614 | None:intergenic |
| GACAAGATTATTCTTCAGTT+CGG | 0.446887 | 1_2:+66614779 | Msa0086020:CDS |
| AATGCTCAGCTGGCTCCTCC+TGG | 0.452432 | 1_2:+66614239 | Msa0086020:CDS |
| CCCGCTTCATCCCTCGAGCC+TGG | 0.453190 | 1_2:+66614401 | Msa0086020:CDS |
| AAGGCTTCCTGGACATCAAA+GGG | 0.458001 | 1_2:+66612547 | Msa0086020:CDS |
| TGTGCTGGCTGCAACGGTGC+AGG | 0.458340 | 1_2:-66614746 | None:intergenic |
| CACAGAGTATGTTATATCAA+TGG | 0.458685 | 1_2:+66613703 | Msa0086020:CDS |
| GAGCCTGGTGGTGTTGTCCC+AGG | 0.458781 | 1_2:+66614416 | Msa0086020:CDS |
| TGGAAGCAACTGAGAGTACT+TGG | 0.468061 | 1_2:+66612678 | Msa0086020:CDS |
| ACATTGGGAAGAGATTGTTT+TGG | 0.470443 | 1_2:-66615036 | None:intergenic |
| TGTAGGTTCTCAGATATAAT+GGG | 0.470818 | 1_2:+66614530 | Msa0086020:CDS |
| AGATTGCGGGGAATGAGCTC+TGG | 0.475959 | 1_2:-66614443 | None:intergenic |
| TGTATCATAAATTATGAACT+TGG | 0.479777 | 1_2:-66614201 | None:intergenic |
| TCCCTATAACAATGCTCAGC+TGG | 0.484175 | 1_2:+66614229 | Msa0086020:CDS |
| AAGGGGCAAGTCGCGTAGTT+CGG | 0.484348 | 1_2:+66612565 | Msa0086020:CDS |
| TGCGGGGAATGAGCTCTGGC+TGG | 0.484831 | 1_2:-66614439 | None:intergenic |
| GACTTGCCCCTTTGATGTCC+AGG | 0.489493 | 1_2:-66612554 | None:intergenic |
| ACCTATGAGTTGAATGTCCT+TGG | 0.490286 | 1_2:+66614335 | Msa0086020:CDS |
| TTGTCATGGTCTGACTGTGC+TGG | 0.490534 | 1_2:-66614761 | None:intergenic |
| CCAGGCTCGAGGGATGAAGC+GGG | 0.492821 | 1_2:-66614401 | None:intergenic |
| TGAAGACGAGGAGGAGGGGA+AGG | 0.493522 | 1_2:+66614562 | Msa0086020:CDS |
| TCACACGTCCCCTAAAGTTA+AGG | 0.494461 | 1_2:-66614646 | None:intergenic |
| TGGCAATGAAGACGAGGAGG+AGG | 0.494605 | 1_2:+66614556 | Msa0086020:CDS |
| GCAGGTCCTGTTGCGGAATG+AGG | 0.499858 | 1_2:-66614728 | None:intergenic |
| TCTGACTGTGCTGGCTGCAA+CGG | 0.501813 | 1_2:-66614752 | None:intergenic |
| ACCAAGGACATTCAACTCAT+AGG | 0.504041 | 1_2:-66614336 | None:intergenic |
| GTTGCGGAATGAGGAGCGAC+AGG | 0.508875 | 1_2:-66614719 | None:intergenic |
| TTGAATCTACGGCTGCGTCC+AGG | 0.511465 | 1_2:-66614257 | None:intergenic |
| TTAAGAACAAGTCTCCTAGA+TGG | 0.514190 | 1_2:+66614600 | Msa0086020:CDS |
| AAAAGAAAGAAACAAGAGGT+AGG | 0.515304 | 1_2:-66611476 | None:intergenic |
| CATTCAACTCATAGGTGACC+TGG | 0.520911 | 1_2:-66614328 | None:intergenic |
| TGGCCTGGGACAACACCACC+AGG | 0.526446 | 1_2:-66614419 | None:intergenic |
| GAGGTTGATCATGCAACTCA+TGG | 0.527376 | 1_2:-66612589 | None:intergenic |
| CAGGACTGAGGCAAAGGAAG+AGG | 0.529546 | 1_2:-66613185 | None:intergenic |
| TTCTCAGATATAATGGGAGC+TGG | 0.533677 | 1_2:+66614536 | Msa0086020:CDS |
| CCCATGGGCTAGCCTTCCAC+CGG | 0.534682 | 1_2:+66612628 | Msa0086020:CDS |
| ACACTTACATCGGAAAGCTT+AGG | 0.535916 | 1_2:+66613753 | Msa0086020:CDS |
| AAATCATAACTTACATAAAG+GGG | 0.537842 | 1_2:-66615101 | None:intergenic |
| GCGATGTTGTAACTGCCACT+AGG | 0.538385 | 1_2:-66614305 | None:intergenic |
| GTAGTATTGTTCGTGATGTG+AGG | 0.542989 | 1_2:+66612486 | Msa0086020:CDS |
| CACGAAGAAGCTCCGGTGGA+AGG | 0.548406 | 1_2:-66612640 | None:intergenic |
| ACCAGGCTCGAGGGATGAAG+CGG | 0.552625 | 1_2:-66614402 | None:intergenic |
| CAACGGTGCAGGTCCTGTTG+CGG | 0.552800 | 1_2:-66614735 | None:intergenic |
| TCCGGTGGAAGGCTAGCCCA+TGG | 0.553438 | 1_2:-66612629 | None:intergenic |
| TAAGGCTTCCTGGACATCAA+AGG | 0.555010 | 1_2:+66612546 | Msa0086020:CDS |
| ATTCTTCAGTTCGGTAAAGT+CGG | 0.555879 | 1_2:+66614788 | Msa0086020:CDS |
| TTCGTGGGCCTCTAGTACCA+AGG | 0.556399 | 1_2:-66614352 | None:intergenic |
| GCTTACCAGGACTGAGGCAA+AGG | 0.556568 | 1_2:-66613191 | None:intergenic |
| GCTCATTCCCCGCAATCTTG+AGG | 0.558110 | 1_2:+66614448 | Msa0086020:CDS |
| TTACAGCCGGGGTATAGGGA+TGG | 0.560354 | 1_2:+66613114 | Msa0086020:intron |
| ATAGTGCAATTCATCCTTCG+TGG | 0.560544 | 1_2:-66614368 | None:intergenic |
| ACATATCGCAAAAGCCTGAA+AGG | 0.562316 | 1_2:-66614852 | None:intergenic |
| ATAACATCACGAAGAAGCTC+CGG | 0.562691 | 1_2:-66612647 | None:intergenic |
| GGACAACACCACCAGGCTCG+AGG | 0.563929 | 1_2:-66614412 | None:intergenic |
| CGATGTTGTAACTGCCACTA+GGG | 0.565087 | 1_2:-66614304 | None:intergenic |
| GTGCTGCGGTCTGCAAGTCG+TGG | 0.571719 | 1_2:+66612726 | Msa0086020:CDS |
| GCAACTGAGAGTACTTGGCC+TGG | 0.572741 | 1_2:+66612683 | Msa0086020:CDS |
| ATTGTTCGTGATGTGAGGGA+TGG | 0.573863 | 1_2:+66612491 | Msa0086020:CDS |
| CCGGTGGAAGGCTAGCCCAT+GGG | 0.574926 | 1_2:-66612628 | None:intergenic |
| TTGAATGTCCTTGGTACTAG+AGG | 0.577348 | 1_2:+66614344 | Msa0086020:CDS |
| GGCAATGAAGACGAGGAGGA+GGG | 0.579076 | 1_2:+66614557 | Msa0086020:CDS |
| ACTGAAGAATAATCTTGTCA+TGG | 0.579174 | 1_2:-66614775 | None:intergenic |
| GGCATGAACAACTGCAATGT+TGG | 0.579920 | 1_2:+66614621 | Msa0086020:CDS |
| GCAATGAAGACGAGGAGGAG+GGG | 0.583215 | 1_2:+66614558 | Msa0086020:CDS |
| GACTTGTTCTTAAGAACTAG+AGG | 0.583735 | 1_2:-66614590 | None:intergenic |
| GACTGAGGCAAAGGAAGAGG+TGG | 0.586469 | 1_2:-66613182 | None:intergenic |
| CAGTTATACAGAACAGCCCA+TGG | 0.589286 | 1_2:+66612612 | Msa0086020:CDS |
| GGAAAGAATCCTCAAGATTG+CGG | 0.599386 | 1_2:-66614457 | None:intergenic |
| TAGTGCAATTCATCCTTCGT+GGG | 0.600652 | 1_2:-66614367 | None:intergenic |
| TGTTGGTGCCTTAACTTTAG+GGG | 0.601599 | 1_2:+66614638 | Msa0086020:CDS |
| CAACTGAGTTTAGCAGCTGT+AGG | 0.602372 | 1_2:+66614513 | Msa0086020:CDS |
| CTTGTGACTTGTAACTAGAG+TGG | 0.604871 | 1_2:+66612387 | Msa0086020:five_prime_UTR |
| ATCGTGCAAAGGATAAACTA+CGG | 0.607613 | 1_2:-66614478 | None:intergenic |
| TTTGTCACAAAAGACACTCA+AGG | 0.608290 | 1_2:-66612420 | None:intergenic |
| AATCATAACTTACATAAAGG+GGG | 0.613988 | 1_2:-66615100 | None:intergenic |
| GACAACACCACCAGGCTCGA+GGG | 0.616356 | 1_2:-66614411 | None:intergenic |
| TAGTATTGTTCGTGATGTGA+GGG | 0.622920 | 1_2:+66612487 | Msa0086020:CDS |
| GGACTATCGATACCCTCTCT+CGG | 0.623014 | 1_2:+66614829 | Msa0086020:CDS |
| AAAGCCTGAAAGGCCGAGAG+AGG | 0.624015 | 1_2:-66614842 | None:intergenic |
| TCAGTTCGGTAAAGTCGGCA+AGG | 0.626177 | 1_2:+66614793 | Msa0086020:CDS |
| AGCTGAGCATTGTTATAGGG+AGG | 0.628040 | 1_2:-66614227 | None:intergenic |
| GCAACCACATGCTTACGACC+AGG | 0.629724 | 1_2:-66612701 | None:intergenic |
| AGATCCAGTAACACTTACAT+CGG | 0.632514 | 1_2:+66613743 | Msa0086020:CDS |
| CAGGCTCGAGGGATGAAGCG+GGG | 0.635955 | 1_2:-66614400 | None:intergenic |
| GCATGTGGTTGCTTGTGCTG+CGG | 0.636839 | 1_2:+66612712 | Msa0086020:CDS |
| TGGCAGTTACAACATCGCCC+AGG | 0.640405 | 1_2:+66614310 | Msa0086020:CDS |
| ACATCACGAAGAAGCTCCGG+TGG | 0.646205 | 1_2:-66612644 | None:intergenic |
| ATTCAACTCATAGGTGACCT+GGG | 0.649004 | 1_2:-66614327 | None:intergenic |
| AAGCCTGAAAGGCCGAGAGA+GGG | 0.649007 | 1_2:-66614841 | None:intergenic |
| CGGCAAGGATATGTTTACGA+TGG | 0.649091 | 1_2:+66614808 | Msa0086020:CDS |
| GCTTCATCCCTCGAGCCTGG+TGG | 0.650835 | 1_2:+66614404 | Msa0086020:CDS |
| AGCTGGCAATGAAGACGAGG+AGG | 0.651988 | 1_2:+66614553 | Msa0086020:CDS |
| GTTATCGATTGATCGTGCAA+AGG | 0.656627 | 1_2:-66614489 | None:intergenic |
| GGGAGCTGGCAATGAAGACG+AGG | 0.656703 | 1_2:+66614550 | Msa0086020:CDS |
| GGGCTGTTCTGTATAACTGG+AGG | 0.657426 | 1_2:-66612608 | None:intergenic |
| AAAGAATCCTCAAGATTGCG+GGG | 0.658101 | 1_2:-66614455 | None:intergenic |
| GTCAACACTCTTGAATACTG+TGG | 0.664630 | 1_2:+66612770 | Msa0086020:CDS |
| AGTTATACAGAACAGCCCAT+GGG | 0.669811 | 1_2:+66612613 | Msa0086020:CDS |
| ATGGATTTGGAAGCTTATCG+CGG | 0.673701 | 1_2:+66612510 | Msa0086020:CDS |
| TTGGCCTGGTCGTAAGCATG+TGG | 0.677764 | 1_2:+66612697 | Msa0086020:CDS |
| AATCTACGGCTGCGTCCAGG+AGG | 0.679597 | 1_2:-66614254 | None:intergenic |
| GTTTCACCAAAGGTCCCTAG+TGG | 0.689726 | 1_2:+66614290 | Msa0086020:CDS |
| ATGGGTCCATCCCTATACCC+CGG | 0.704486 | 1_2:-66613120 | None:intergenic |
| AGGCTTCCTGGACATCAAAG+GGG | 0.710405 | 1_2:+66612548 | Msa0086020:CDS |
| AGTAAAGCTTACCAGGACTG+AGG | 0.714219 | 1_2:-66613197 | None:intergenic |
| TCACCTGCTTCAGAGAAACA+GGG | 0.717293 | 1_2:-66612805 | None:intergenic |
| TTGGTACTAGAGGCCCACGA+AGG | 0.736988 | 1_2:+66614354 | Msa0086020:CDS |
| GATTTGGAAGCTTATCGCGG+CGG | 0.742066 | 1_2:+66612513 | Msa0086020:CDS |
| ATAGTGACAAGAGATACATG+TGG | 0.812071 | 1_2:+66614907 | Msa0086020:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTGTGAAATTTATATTT+GGG | + | chr1_2:66611616-66611635 | Msa0086020:five_prime_UTR | 10.0% |
| !!! | GATTTTGTGAAATTTATATT+TGG | + | chr1_2:66611615-66611634 | Msa0086020:five_prime_UTR | 15.0% |
| !!! | ACTGTTTTTTTTAGATAAAA+AGG | + | chr1_2:66611704-66611723 | Msa0086020:intron | 15.0% |
| !! | AAAATTAAACAACTTATCAA+AGG | - | chr1_2:66612080-66612099 | None:intergenic | 15.0% |
| !! | TTTGTAATTCATATTTATGA+GGG | - | chr1_2:66613572-66613591 | None:intergenic | 15.0% |
| !! | ATTTGTAATTCATATTTATG+AGG | - | chr1_2:66613573-66613592 | None:intergenic | 15.0% |
| !! | TAAATCATAACTTACATAAA+GGG | - | chr1_2:66615105-66615124 | None:intergenic | 15.0% |
| !! | TTAAATCATAACTTACATAA+AGG | - | chr1_2:66615106-66615125 | None:intergenic | 15.0% |
| !! | TTAAAAAAGAAAGAAACAAG+AGG | - | chr1_2:66611483-66611502 | None:intergenic | 20.0% |
| !! | AATCAGAAGAAAAAAAATCT+GGG | - | chr1_2:66611546-66611565 | None:intergenic | 20.0% |
| !! | AAATCAGAAGAAAAAAAATC+TGG | - | chr1_2:66611547-66611566 | None:intergenic | 20.0% |
| !!! | GTATTTGCTAAAACATAAAA+AGG | + | chr1_2:66611679-66611698 | Msa0086020:five_prime_UTR | 20.0% |
| !! | AAAAGATGTTAAAAAACAAG+TGG | + | chr1_2:66612853-66612872 | Msa0086020:intron | 20.0% |
| !! | TTATAATATTTAGTGTGCAA+CGG | - | chr1_2:66613044-66613063 | None:intergenic | 20.0% |
| !!! | ATATTATAAAATTTAGAGCC+TGG | + | chr1_2:66613055-66613074 | Msa0086020:intron | 20.0% |
| !! | AAGCACATAAATGAAAAATT+AGG | - | chr1_2:66613081-66613100 | None:intergenic | 20.0% |
| !! | ATCAAATCAAATAGTGTATT+AGG | - | chr1_2:66613232-66613251 | None:intergenic | 20.0% |
| !!! | AGAAACTTTTCATTTTCATA+TGG | - | chr1_2:66613471-66613490 | None:intergenic | 20.0% |
| !!! | GAATTACAAATTTTTAGATC+TGG | + | chr1_2:66613582-66613601 | Msa0086020:intron | 20.0% |
| !!! | TGAATTTAATTTGTATGCAT+TGG | + | chr1_2:66613900-66613919 | Msa0086020:intron | 20.0% |
| !! | TTTAAATAGTGAGATCTAAT+TGG | + | chr1_2:66614009-66614028 | Msa0086020:intron | 20.0% |
| !! | TTAAATAGTGAGATCTAATT+GGG | + | chr1_2:66614010-66614029 | Msa0086020:intron | 20.0% |
| !!! | TTTTTCGTAAAGTAATTCTT+GGG | - | chr1_2:66614101-66614120 | None:intergenic | 20.0% |
| !!! | ATTTTTCGTAAAGTAATTCT+TGG | - | chr1_2:66614102-66614121 | None:intergenic | 20.0% |
| !! | TGTATCATAAATTATGAACT+TGG | - | chr1_2:66614204-66614223 | None:intergenic | 20.0% |
| !! | TACTTTACAATTTAACTATG+AGG | - | chr1_2:66615011-66615030 | None:intergenic | 20.0% |
| !! | AAATCATAACTTACATAAAG+GGG | - | chr1_2:66615104-66615123 | None:intergenic | 20.0% |
| ! | TTCTTATATTTGTGTTGTAG+TGG | + | chr1_2:66611762-66611781 | Msa0086020:intron | 25.0% |
| ! | CCAAACTTCAATGATAAATA+AGG | - | chr1_2:66611866-66611885 | None:intergenic | 25.0% |
| !! | CCTTATTTATCATTGAAGTT+TGG | + | chr1_2:66611863-66611882 | Msa0086020:five_prime_UTR | 25.0% |
| !!! | TGTCAGAAACAATTTTAAGA+TGG | - | chr1_2:66612166-66612185 | None:intergenic | 25.0% |
| !!! | AATTGTTTCTGACAAAAGTA+TGG | + | chr1_2:66612172-66612191 | Msa0086020:intron | 25.0% |
| !!! | TTTAAACTGCTTTAGCTTTT+AGG | + | chr1_2:66612198-66612217 | Msa0086020:intron | 25.0% |
| !!! | TGATCATTAAGTATTGAAGA+TGG | + | chr1_2:66612314-66612333 | Msa0086020:intron | 25.0% |
| ! | TGGTTAATGAATTTCAGTTA+AGG | + | chr1_2:66612873-66612892 | Msa0086020:intron | 25.0% |
| !!! | ATATGGACTCTATTTGTTTT+AGG | + | chr1_2:66613410-66613429 | Msa0086020:intron | 25.0% |
| !!! | AATTTTTAGATCTGGTTTGT+CGG | + | chr1_2:66613590-66613609 | Msa0086020:intron | 25.0% |
| ! | ATTGTCTTGTAAAAAGTTGA+TGG | + | chr1_2:66613862-66613881 | Msa0086020:intron | 25.0% |
| !! | TAGAATGTAATCTCCATTTT+AGG | + | chr1_2:66614939-66614958 | Msa0086020:three_prime_UTR | 25.0% |
| ! | ACAAGATAAAAAAGGACATT+GGG | - | chr1_2:66615054-66615073 | None:intergenic | 25.0% |
| ! | AATCATAACTTACATAAAGG+GGG | - | chr1_2:66615103-66615122 | None:intergenic | 25.0% |
| AAAAGAAAGAAACAAGAGGT+AGG | - | chr1_2:66611479-66611498 | None:intergenic | 30.0% | |
| ATCTTACACTCTCTACTTTA+AGG | + | chr1_2:66611901-66611920 | Msa0086020:intron | 30.0% | |
| TCTTGTGAATGTTTCTCATA+AGG | + | chr1_2:66611948-66611967 | Msa0086020:intron | 30.0% | |
| CTTGTGAATGTTTCTCATAA+GGG | + | chr1_2:66611949-66611968 | Msa0086020:intron | 30.0% | |
| ATTTGATTCCTGTTCTCATA+AGG | + | chr1_2:66611987-66612006 | Msa0086020:intron | 30.0% | |
| TTTGATTCCTGTTCTCATAA+GGG | + | chr1_2:66611988-66612007 | Msa0086020:intron | 30.0% | |
| TAGTCAATCTAACTTCTCAT+AGG | - | chr1_2:66612115-66612134 | None:intergenic | 30.0% | |
| AGTTAGATTGACTATTGAGA+AGG | + | chr1_2:66612121-66612140 | Msa0086020:intron | 30.0% | |
| TCGTGATGTTATTAAGAGAT+TGG | + | chr1_2:66612658-66612677 | Msa0086020:CDS | 30.0% | |
| CATAAATGAAAAATTAGGCC+AGG | - | chr1_2:66613076-66613095 | None:intergenic | 30.0% | |
| !!! | TGTTGATTTTGTTTTACAGC+CGG | + | chr1_2:66613101-66613120 | Msa0086020:intron | 30.0% |
| AAAGAGAAAGATGAATTGCT+TGG | - | chr1_2:66613356-66613375 | None:intergenic | 30.0% | |
| GCATGGACAATAAGAAATAT+TGG | - | chr1_2:66613449-66613468 | None:intergenic | 30.0% | |
| ! | CTTTTCATTTTCATATGGCA+TGG | - | chr1_2:66613466-66613485 | None:intergenic | 30.0% |
| CACAGAGTATGTTATATCAA+TGG | + | chr1_2:66613703-66613722 | Msa0086020:CDS | 30.0% | |
| !!! | CATTTTGTTTTCGATCTGTT+TGG | + | chr1_2:66613791-66613810 | Msa0086020:intron | 30.0% |
| CACATGCACAAATATCTAAT+TGG | - | chr1_2:66613967-66613986 | None:intergenic | 30.0% | |
| TTAGATATTTGTGCATGTGT+AGG | + | chr1_2:66613968-66613987 | Msa0086020:intron | 30.0% | |
| TAGATATTTGTGCATGTGTA+GGG | + | chr1_2:66613969-66613988 | Msa0086020:intron | 30.0% | |
| ! | TGTGTAAAATTGGTTTACGT+TGG | + | chr1_2:66614037-66614056 | Msa0086020:intron | 30.0% |
| TATTAACTTTCTCCTCTTTC+AGG | + | chr1_2:66614162-66614181 | Msa0086020:intron | 30.0% | |
| AAGAAAATTAGACCTGAAAG+AGG | - | chr1_2:66614177-66614196 | None:intergenic | 30.0% | |
| !! | TCTTTCAGGTCTAATTTTCT+TGG | + | chr1_2:66614176-66614195 | Msa0086020:intron | 30.0% |
| !!! | CTTTTTTCGAGTTGAATCTA+CGG | - | chr1_2:66614271-66614290 | None:intergenic | 30.0% |
| TGTAGGTTCTCAGATATAAT+GGG | + | chr1_2:66614530-66614549 | Msa0086020:CDS | 30.0% | |
| ACTGAAGAATAATCTTGTCA+TGG | - | chr1_2:66614778-66614797 | None:intergenic | 30.0% | |
| GACAAGATTATTCTTCAGTT+CGG | + | chr1_2:66614779-66614798 | Msa0086020:CDS | 30.0% | |
| !! | TCTCCATTTTAGGAATTCAT+AGG | + | chr1_2:66614949-66614968 | Msa0086020:three_prime_UTR | 30.0% |
| CATCCTATGAATTCCTAAAA+TGG | - | chr1_2:66614955-66614974 | None:intergenic | 30.0% | |
| !! | CATTTTAGGAATTCATAGGA+TGG | + | chr1_2:66614953-66614972 | Msa0086020:three_prime_UTR | 30.0% |
| GACAAGATAAAAAAGGACAT+TGG | - | chr1_2:66615055-66615074 | None:intergenic | 30.0% | |
| GAAGAAAAAAAATCTGGGTC+TGG | - | chr1_2:66611541-66611560 | None:intergenic | 35.0% | |
| !! | GGTTACTGTTTTGTTGATGT+AGG | + | chr1_2:66611725-66611744 | Msa0086020:intron | 35.0% |
| TGTTGATGTAGGAATCTTCT+AGG | + | chr1_2:66611736-66611755 | Msa0086020:intron | 35.0% | |
| !! | TCATTGAAGTTTGGTGTTTG+AGG | + | chr1_2:66611872-66611891 | Msa0086020:five_prime_UTR | 35.0% |
| !!! | TTTAGCTTTTAGGTCCATGT+GGG | + | chr1_2:66612208-66612227 | Msa0086020:intron | 35.0% |
| TTTGTCACAAAAGACACTCA+AGG | - | chr1_2:66612423-66612442 | None:intergenic | 35.0% | |
| TTCCAATACACTGACAGTTT+CGG | - | chr1_2:66612453-66612472 | None:intergenic | 35.0% | |
| TAGTATTGTTCGTGATGTGA+GGG | + | chr1_2:66612487-66612506 | Msa0086020:CDS | 35.0% | |
| TTACAGTTAGGGTTCAAAGT+CGG | - | chr1_2:66612918-66612937 | None:intergenic | 35.0% | |
| ACCCTAACTGTAACAATCAT+TGG | + | chr1_2:66612925-66612944 | Msa0086020:intron | 35.0% | |
| GCCAATGATTGTTACAGTTA+GGG | - | chr1_2:66612929-66612948 | None:intergenic | 35.0% | |
| TCAGGAGATTAGTAGAAGTT+TGG | - | chr1_2:66612951-66612970 | None:intergenic | 35.0% | |
| !!! | GTTGATTTTGTTTTACAGCC+GGG | + | chr1_2:66613102-66613121 | Msa0086020:intron | 35.0% |
| !!! | TTGATTTTGTTTTACAGCCG+GGG | + | chr1_2:66613103-66613122 | Msa0086020:intron | 35.0% |
| ! | CTTTTGATGAAACACTGGAT+GGG | - | chr1_2:66613141-66613160 | None:intergenic | 35.0% |
| ! | TCTTTTGATGAAACACTGGA+TGG | - | chr1_2:66613142-66613161 | None:intergenic | 35.0% |
| ! | TGTCTCTTTTGATGAAACAC+TGG | - | chr1_2:66613146-66613165 | None:intergenic | 35.0% |
| TCAACAAAGTAAAGCTTACC+AGG | - | chr1_2:66613207-66613226 | None:intergenic | 35.0% | |
| TTATGAGTTATCGCATTTCG+TGG | + | chr1_2:66613302-66613321 | Msa0086020:intron | 35.0% | |
| GAATTGCTTGGATTGACAAA+GGG | - | chr1_2:66613344-66613363 | None:intergenic | 35.0% | |
| TGAATTGCTTGGATTGACAA+AGG | - | chr1_2:66613345-66613364 | None:intergenic | 35.0% | |
| TAATTCTGCTGAACTGCATA+TGG | + | chr1_2:66613393-66613412 | Msa0086020:intron | 35.0% | |
| !!! | GGTTCAATTTTTTGCTATGC+TGG | + | chr1_2:66613508-66613527 | Msa0086020:intron | 35.0% |
| AGATCCAGTAACACTTACAT+CGG | + | chr1_2:66613743-66613762 | Msa0086020:CDS | 35.0% | |
| GTTATGAGATACTCTGTCTA+TGG | - | chr1_2:66613831-66613850 | None:intergenic | 35.0% | |
| GTAAAGTAATTCTTGGGTGA+TGG | - | chr1_2:66614095-66614114 | None:intergenic | 35.0% | |
| CTCGAAAAAAGTTTCACCAA+AGG | + | chr1_2:66614280-66614299 | Msa0086020:CDS | 35.0% | |
| ATCGTGCAAAGGATAAACTA+CGG | - | chr1_2:66614481-66614500 | None:intergenic | 35.0% | |
| CTGTAGGTTCTCAGATATAA+TGG | + | chr1_2:66614529-66614548 | Msa0086020:CDS | 35.0% | |
| ! | GACTTGTTCTTAAGAACTAG+AGG | - | chr1_2:66614593-66614612 | None:intergenic | 35.0% |
| TTAAGAACAAGTCTCCTAGA+TGG | + | chr1_2:66614600-66614619 | Msa0086020:CDS | 35.0% | |
| ! | AATGTTGGTGCCTTAACTTT+AGG | + | chr1_2:66614636-66614655 | Msa0086020:CDS | 35.0% |
| ! | ATGTTGGTGCCTTAACTTTA+GGG | + | chr1_2:66614637-66614656 | Msa0086020:CDS | 35.0% |
| ATTCTTCAGTTCGGTAAAGT+CGG | + | chr1_2:66614788-66614807 | Msa0086020:CDS | 35.0% | |
| ATAGTGACAAGAGATACATG+TGG | + | chr1_2:66614907-66614926 | Msa0086020:exon | 35.0% | |
| ! | ACATTGGGAAGAGATTGTTT+TGG | - | chr1_2:66615039-66615058 | None:intergenic | 35.0% |
| GGGCAATGACAAGATAAAAA+AGG | - | chr1_2:66615062-66615081 | None:intergenic | 35.0% | |
| ! | TGCCCTTTTTCTTTTGAACA+TGG | + | chr1_2:66615077-66615096 | Msa0086020:three_prime_UTR | 35.0% |
| GGCCATGTTCAAAAGAAAAA+GGG | - | chr1_2:66615082-66615101 | None:intergenic | 35.0% | |
| AAATCTGGGTCTGGAAGTTT+CGG | - | chr1_2:66611532-66611551 | None:intergenic | 40.0% | |
| !!! | CTTTAGCTTTTAGGTCCATG+TGG | + | chr1_2:66612207-66612226 | Msa0086020:intron | 40.0% |
| !! | TTAGCTTTTAGGTCCATGTG+GGG | + | chr1_2:66612209-66612228 | Msa0086020:intron | 40.0% |
| ! | CTTGTGACTTGTAACTAGAG+TGG | + | chr1_2:66612387-66612406 | Msa0086020:five_prime_UTR | 40.0% |
| TTCCGAAACTGTCAGTGTAT+TGG | + | chr1_2:66612448-66612467 | Msa0086020:five_prime_UTR | 40.0% | |
| GTAGTATTGTTCGTGATGTG+AGG | + | chr1_2:66612486-66612505 | Msa0086020:CDS | 40.0% | |
| ATGGATTTGGAAGCTTATCG+CGG | + | chr1_2:66612510-66612529 | Msa0086020:CDS | 40.0% | |
| AGTTATACAGAACAGCCCAT+GGG | + | chr1_2:66612613-66612632 | Msa0086020:CDS | 40.0% | |
| ATAACATCACGAAGAAGCTC+CGG | - | chr1_2:66612650-66612669 | None:intergenic | 40.0% | |
| GTCAACACTCTTGAATACTG+TGG | + | chr1_2:66612770-66612789 | Msa0086020:CDS | 40.0% | |
| GGCCAATGATTGTTACAGTT+AGG | - | chr1_2:66612930-66612949 | None:intergenic | 40.0% | |
| AACGACAGGGTTAAGACAAA+AGG | + | chr1_2:66612997-66613016 | Msa0086020:intron | 40.0% | |
| TTCTATCCTACTTTGCGTGT+TGG | + | chr1_2:66613487-66613506 | Msa0086020:intron | 40.0% | |
| ATTGAACCAACACGCAAAGT+AGG | - | chr1_2:66613496-66613515 | None:intergenic | 40.0% | |
| ! | TTTTCAACAAGCAATGCTGC+AGG | - | chr1_2:66613638-66613657 | None:intergenic | 40.0% |
| ! | GCAGCATTGCTTGTTGAAAA+TGG | + | chr1_2:66613638-66613657 | Msa0086020:intron | 40.0% |
| CTTTCCGATGTAAGTGTTAC+TGG | - | chr1_2:66613750-66613769 | None:intergenic | 40.0% | |
| ACACTTACATCGGAAAGCTT+AGG | + | chr1_2:66613753-66613772 | Msa0086020:CDS | 40.0% | |
| TACATCGGAAAGCTTAGGTA+TGG | + | chr1_2:66613758-66613777 | Msa0086020:intron | 40.0% | |
| ATTGGGCGTCTGTGTAAAAT+TGG | + | chr1_2:66614027-66614046 | Msa0086020:intron | 40.0% | |
| ! | TTCTTGGGTGATGGCAAAAA+AGG | - | chr1_2:66614086-66614105 | None:intergenic | 40.0% |
| ATTCAACTCATAGGTGACCT+GGG | - | chr1_2:66614330-66614349 | None:intergenic | 40.0% | |
| ! | ACCTATGAGTTGAATGTCCT+TGG | + | chr1_2:66614335-66614354 | Msa0086020:CDS | 40.0% |
| ACCAAGGACATTCAACTCAT+AGG | - | chr1_2:66614339-66614358 | None:intergenic | 40.0% | |
| TTGAATGTCCTTGGTACTAG+AGG | + | chr1_2:66614344-66614363 | Msa0086020:CDS | 40.0% | |
| TAGTGCAATTCATCCTTCGT+GGG | - | chr1_2:66614370-66614389 | None:intergenic | 40.0% | |
| ATAGTGCAATTCATCCTTCG+TGG | - | chr1_2:66614371-66614390 | None:intergenic | 40.0% | |
| AAAGAATCCTCAAGATTGCG+GGG | - | chr1_2:66614458-66614477 | None:intergenic | 40.0% | |
| GAAAGAATCCTCAAGATTGC+GGG | - | chr1_2:66614459-66614478 | None:intergenic | 40.0% | |
| GGAAAGAATCCTCAAGATTG+CGG | - | chr1_2:66614460-66614479 | None:intergenic | 40.0% | |
| ! | GTTATCGATTGATCGTGCAA+AGG | - | chr1_2:66614492-66614511 | None:intergenic | 40.0% |
| ! | TTCTCAGATATAATGGGAGC+TGG | + | chr1_2:66614536-66614555 | Msa0086020:CDS | 40.0% |
| ! | TGTTGGTGCCTTAACTTTAG+GGG | + | chr1_2:66614638-66614657 | Msa0086020:CDS | 40.0% |
| ACATATCGCAAAAGCCTGAA+AGG | - | chr1_2:66614855-66614874 | None:intergenic | 40.0% | |
| GGGCCATGTTCAAAAGAAAA+AGG | - | chr1_2:66615083-66615102 | None:intergenic | 40.0% | |
| ! | GTTTCTCATAAGGGTGTGTG+AGG | + | chr1_2:66611958-66611977 | Msa0086020:intron | 45.0% |
| TCCTGTTCTCATAAGGGAAG+AGG | + | chr1_2:66611994-66612013 | Msa0086020:intron | 45.0% | |
| TCCTCTTCCCTTATGAGAAC+AGG | - | chr1_2:66611998-66612017 | None:intergenic | 45.0% | |
| TCATCAAACAAAGCCCCACA+TGG | - | chr1_2:66612225-66612244 | None:intergenic | 45.0% | |
| ATTGTTCGTGATGTGAGGGA+TGG | + | chr1_2:66612491-66612510 | Msa0086020:CDS | 45.0% | |
| !!! | AGTTTTGAGGTAAGGCTTCC+TGG | + | chr1_2:66612536-66612555 | Msa0086020:CDS | 45.0% |
| TAAGGCTTCCTGGACATCAA+AGG | + | chr1_2:66612546-66612565 | Msa0086020:CDS | 45.0% | |
| AAGGCTTCCTGGACATCAAA+GGG | + | chr1_2:66612547-66612566 | Msa0086020:CDS | 45.0% | |
| ! | GAGGTTGATCATGCAACTCA+TGG | - | chr1_2:66612592-66612611 | None:intergenic | 45.0% |
| ! | CATGGGCTGTTCTGTATAAC+TGG | - | chr1_2:66612614-66612633 | None:intergenic | 45.0% |
| CAGTTATACAGAACAGCCCA+TGG | + | chr1_2:66612612-66612631 | Msa0086020:CDS | 45.0% | |
| !! | TGGAAGCAACTGAGAGTACT+TGG | + | chr1_2:66612678-66612697 | Msa0086020:CDS | 45.0% |
| !! | TTTCCCTGTTTCTCTGAAGC+AGG | + | chr1_2:66612802-66612821 | Msa0086020:CDS | 45.0% |
| TCACCTGCTTCAGAGAAACA+GGG | - | chr1_2:66612808-66612827 | None:intergenic | 45.0% | |
| TAATCTCCTGACCGATTACC+AGG | + | chr1_2:66612960-66612979 | Msa0086020:intron | 45.0% | |
| AATCTCCTGACCGATTACCA+GGG | + | chr1_2:66612961-66612980 | Msa0086020:intron | 45.0% | |
| !! | TTGTTTTACAGCCGGGGTAT+AGG | + | chr1_2:66613109-66613128 | Msa0086020:intron | 45.0% |
| ! | TGTTTTACAGCCGGGGTATA+GGG | + | chr1_2:66613110-66613129 | Msa0086020:intron | 45.0% |
| AGTAAAGCTTACCAGGACTG+AGG | - | chr1_2:66613200-66613219 | None:intergenic | 45.0% | |
| ! | AGCTGAGCATTGTTATAGGG+AGG | - | chr1_2:66614230-66614249 | None:intergenic | 45.0% |
| TCCCTATAACAATGCTCAGC+TGG | + | chr1_2:66614229-66614248 | Msa0086020:CDS | 45.0% | |
| ! | GCCAGCTGAGCATTGTTATA+GGG | - | chr1_2:66614233-66614252 | None:intergenic | 45.0% |
| ! | AGCCAGCTGAGCATTGTTAT+AGG | - | chr1_2:66614234-66614253 | None:intergenic | 45.0% |
| CGATGTTGTAACTGCCACTA+GGG | - | chr1_2:66614307-66614326 | None:intergenic | 45.0% | |
| CATTCAACTCATAGGTGACC+TGG | - | chr1_2:66614331-66614350 | None:intergenic | 45.0% | |
| CAACTGAGTTTAGCAGCTGT+AGG | + | chr1_2:66614513-66614532 | Msa0086020:CDS | 45.0% | |
| TGCAGTTGTTCATGCCATCT+AGG | - | chr1_2:66614617-66614636 | None:intergenic | 45.0% | |
| GGCATGAACAACTGCAATGT+TGG | + | chr1_2:66614621-66614640 | Msa0086020:CDS | 45.0% | |
| TCACACGTCCCCTAAAGTTA+AGG | - | chr1_2:66614649-66614668 | None:intergenic | 45.0% | |
| CGGCAAGGATATGTTTACGA+TGG | + | chr1_2:66614808-66614827 | Msa0086020:CDS | 45.0% | |
| ! | CGTGATGTGAGGGATGGATT+TGG | + | chr1_2:66612497-66612516 | Msa0086020:CDS | 50.0% |
| GATTTGGAAGCTTATCGCGG+CGG | + | chr1_2:66612513-66612532 | Msa0086020:CDS | 50.0% | |
| AGGCTTCCTGGACATCAAAG+GGG | + | chr1_2:66612548-66612567 | Msa0086020:CDS | 50.0% | |
| GGGCTGTTCTGTATAACTGG+AGG | - | chr1_2:66612611-66612630 | None:intergenic | 50.0% | |
| CTCACCTGCTTCAGAGAAAC+AGG | - | chr1_2:66612809-66612828 | None:intergenic | 50.0% | |
| ATCTCCTGACCGATTACCAG+GGG | + | chr1_2:66612962-66612981 | Msa0086020:intron | 50.0% | |
| TCTTAACCCTGTCGTTCCCA+GGG | - | chr1_2:66612993-66613012 | None:intergenic | 50.0% | |
| CTCTGTGCAAGTCGTTCTTC+TGG | - | chr1_2:66613690-66613709 | None:intergenic | 50.0% | |
| GTTTCACCAAAGGTCCCTAG+TGG | + | chr1_2:66614290-66614309 | Msa0086020:CDS | 50.0% | |
| TAACTGCCACTAGGGACCTT+TGG | - | chr1_2:66614299-66614318 | None:intergenic | 50.0% | |
| GCGATGTTGTAACTGCCACT+AGG | - | chr1_2:66614308-66614327 | None:intergenic | 50.0% | |
| TTGTCATGGTCTGACTGTGC+TGG | - | chr1_2:66614764-66614783 | None:intergenic | 50.0% | |
| TCAGTTCGGTAAAGTCGGCA+AGG | + | chr1_2:66614793-66614812 | Msa0086020:CDS | 50.0% | |
| GGACTATCGATACCCTCTCT+CGG | + | chr1_2:66614829-66614848 | Msa0086020:CDS | 50.0% | |
| ! | CTTATCGCGGCGGAGTTTTG+AGG | + | chr1_2:66612523-66612542 | Msa0086020:CDS | 55.0% |
| GACTTGCCCCTTTGATGTCC+AGG | - | chr1_2:66612557-66612576 | None:intergenic | 55.0% | |
| AAGGGGCAAGTCGCGTAGTT+CGG | + | chr1_2:66612565-66612584 | Msa0086020:CDS | 55.0% | |
| ACATCACGAAGAAGCTCCGG+TGG | - | chr1_2:66612647-66612666 | None:intergenic | 55.0% | |
| !! | GCAACTGAGAGTACTTGGCC+TGG | + | chr1_2:66612683-66612702 | Msa0086020:CDS | 55.0% |
| TTGGCCTGGTCGTAAGCATG+TGG | + | chr1_2:66612697-66612716 | Msa0086020:CDS | 55.0% | |
| GCAACCACATGCTTACGACC+AGG | - | chr1_2:66612704-66612723 | None:intergenic | 55.0% | |
| GCATGTGGTTGCTTGTGCTG+CGG | + | chr1_2:66612712-66612731 | Msa0086020:CDS | 55.0% | |
| TCTCCTGACCGATTACCAGG+GGG | + | chr1_2:66612963-66612982 | Msa0086020:intron | 55.0% | |
| CTTAACCCTGTCGTTCCCAG+GGG | - | chr1_2:66612992-66613011 | None:intergenic | 55.0% | |
| GTCTTAACCCTGTCGTTCCC+AGG | - | chr1_2:66612994-66613013 | None:intergenic | 55.0% | |
| TTACAGCCGGGGTATAGGGA+TGG | + | chr1_2:66613114-66613133 | Msa0086020:intron | 55.0% | |
| ATGGGTCCATCCCTATACCC+CGG | - | chr1_2:66613123-66613142 | None:intergenic | 55.0% | |
| GACTGAGGCAAAGGAAGAGG+TGG | - | chr1_2:66613185-66613204 | None:intergenic | 55.0% | |
| CAGGACTGAGGCAAAGGAAG+AGG | - | chr1_2:66613188-66613207 | None:intergenic | 55.0% | |
| CTCTTCCTTTGCCTCAGTCC+TGG | + | chr1_2:66613186-66613205 | Msa0086020:CDS | 55.0% | |
| GCTTACCAGGACTGAGGCAA+AGG | - | chr1_2:66613194-66613213 | None:intergenic | 55.0% | |
| TTGAATCTACGGCTGCGTCC+AGG | - | chr1_2:66614260-66614279 | None:intergenic | 55.0% | |
| TGGCAGTTACAACATCGCCC+AGG | + | chr1_2:66614310-66614329 | Msa0086020:CDS | 55.0% | |
| TTCGTGGGCCTCTAGTACCA+AGG | - | chr1_2:66614355-66614374 | None:intergenic | 55.0% | |
| TTGGTACTAGAGGCCCACGA+AGG | + | chr1_2:66614354-66614373 | Msa0086020:CDS | 55.0% | |
| AGATTGCGGGGAATGAGCTC+TGG | - | chr1_2:66614446-66614465 | None:intergenic | 55.0% | |
| GCTCATTCCCCGCAATCTTG+AGG | + | chr1_2:66614448-66614467 | Msa0086020:CDS | 55.0% | |
| AGCTGGCAATGAAGACGAGG+AGG | + | chr1_2:66614553-66614572 | Msa0086020:CDS | 55.0% | |
| TGGCAATGAAGACGAGGAGG+AGG | + | chr1_2:66614556-66614575 | Msa0086020:CDS | 55.0% | |
| GGCAATGAAGACGAGGAGGA+GGG | + | chr1_2:66614557-66614576 | Msa0086020:CDS | 55.0% | |
| GCAATGAAGACGAGGAGGAG+GGG | + | chr1_2:66614558-66614577 | Msa0086020:CDS | 55.0% | |
| !! | TCTGACTGTGCTGGCTGCAA+CGG | - | chr1_2:66614755-66614774 | None:intergenic | 55.0% |
| ATACCCTCTCTCGGCCTTTC+AGG | + | chr1_2:66614838-66614857 | Msa0086020:CDS | 55.0% | |
| AAGCCTGAAAGGCCGAGAGA+GGG | - | chr1_2:66614844-66614863 | None:intergenic | 55.0% | |
| AAAGCCTGAAAGGCCGAGAG+AGG | - | chr1_2:66614845-66614864 | None:intergenic | 55.0% | |
| !!! | CGCGGCGGAGTTTTGAGGTA+AGG | + | chr1_2:66612528-66612547 | Msa0086020:CDS | 60.0% |
| CACGAAGAAGCTCCGGTGGA+AGG | - | chr1_2:66612643-66612662 | None:intergenic | 60.0% | |
| AAGCCCCCTGGTAATCGGTC+AGG | - | chr1_2:66612969-66612988 | None:intergenic | 60.0% | |
| AGGGGAAGCCCCCTGGTAAT+CGG | - | chr1_2:66612974-66612993 | None:intergenic | 60.0% | |
| ATTACCAGGGGGCTTCCCCT+GGG | + | chr1_2:66612974-66612993 | Msa0086020:intron | 60.0% | |
| ! | AATGCTCAGCTGGCTCCTCC+TGG | + | chr1_2:66614239-66614258 | Msa0086020:CDS | 60.0% |
| AATCTACGGCTGCGTCCAGG+AGG | - | chr1_2:66614257-66614276 | None:intergenic | 60.0% | |
| ACCAGGCTCGAGGGATGAAG+CGG | - | chr1_2:66614405-66614424 | None:intergenic | 60.0% | |
| GACAACACCACCAGGCTCGA+GGG | - | chr1_2:66614414-66614433 | None:intergenic | 60.0% | |
| !! | GAATGAGCTCTGGCTGGCCT+GGG | - | chr1_2:66614436-66614455 | None:intergenic | 60.0% |
| GGGAGCTGGCAATGAAGACG+AGG | + | chr1_2:66614550-66614569 | Msa0086020:CDS | 60.0% | |
| TGAAGACGAGGAGGAGGGGA+AGG | + | chr1_2:66614562-66614581 | Msa0086020:CDS | 60.0% | |
| GAATGAGGAGCGACAGGTGC+AGG | - | chr1_2:66614716-66614735 | None:intergenic | 60.0% | |
| GTTGCGGAATGAGGAGCGAC+AGG | - | chr1_2:66614722-66614741 | None:intergenic | 60.0% | |
| GTCGCTCCTCATTCCGCAAC+AGG | + | chr1_2:66614722-66614741 | Msa0086020:CDS | 60.0% | |
| GCAGGTCCTGTTGCGGAATG+AGG | - | chr1_2:66614731-66614750 | None:intergenic | 60.0% | |
| CAACGGTGCAGGTCCTGTTG+CGG | - | chr1_2:66614738-66614757 | None:intergenic | 60.0% | |
| ! | CCGGTGGAAGGCTAGCCCAT+GGG | - | chr1_2:66612631-66612650 | None:intergenic | 65.0% |
| !! | CCCATGGGCTAGCCTTCCAC+CGG | + | chr1_2:66612628-66612647 | Msa0086020:CDS | 65.0% |
| ! | TCCGGTGGAAGGCTAGCCCA+TGG | - | chr1_2:66612632-66612651 | None:intergenic | 65.0% |
| GTGCTGCGGTCTGCAAGTCG+TGG | + | chr1_2:66612726-66612745 | Msa0086020:CDS | 65.0% | |
| GATTACCAGGGGGCTTCCCC+TGG | + | chr1_2:66612973-66612992 | Msa0086020:intron | 65.0% | |
| GGCTTCCCCTGGGAACGACA+GGG | + | chr1_2:66612984-66613003 | Msa0086020:intron | 65.0% | |
| CAGGCTCGAGGGATGAAGCG+GGG | - | chr1_2:66614403-66614422 | None:intergenic | 65.0% | |
| CCAGGCTCGAGGGATGAAGC+GGG | - | chr1_2:66614404-66614423 | None:intergenic | 65.0% | |
| GCTTCATCCCTCGAGCCTGG+TGG | + | chr1_2:66614404-66614423 | Msa0086020:CDS | 65.0% | |
| GGACAACACCACCAGGCTCG+AGG | - | chr1_2:66614415-66614434 | None:intergenic | 65.0% | |
| !! | GAGCCTGGTGGTGTTGTCCC+AGG | + | chr1_2:66614416-66614435 | Msa0086020:CDS | 65.0% |
| TGGCCTGGGACAACACCACC+AGG | - | chr1_2:66614422-66614441 | None:intergenic | 65.0% | |
| ! | GGAATGAGCTCTGGCTGGCC+TGG | - | chr1_2:66614437-66614456 | None:intergenic | 65.0% |
| ! | TGCGGGGAATGAGCTCTGGC+TGG | - | chr1_2:66614442-66614461 | None:intergenic | 65.0% |
| !! | TGTGCTGGCTGCAACGGTGC+AGG | - | chr1_2:66614749-66614768 | None:intergenic | 65.0% |
| GGGCTTCCCCTGGGAACGAC+AGG | + | chr1_2:66612983-66613002 | Msa0086020:intron | 70.0% | |
| CCCGCTTCATCCCTCGAGCC+TGG | + | chr1_2:66614401-66614420 | Msa0086020:CDS | 70.0% | |
| CGTTCCCAGGGGAAGCCCCC+TGG | - | chr1_2:66612981-66613000 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 66611426 | 66615220 | 66611426 | ID=Msa0086020;Name=Msa0086020 |
| chr1_2 | mRNA | 66611426 | 66615220 | 66611426 | ID=Msa0086020-mRNA-1;Parent=Msa0086020;Name=Msa0086020-mRNA-1;_AED=0.09;_eAED=0.09;_QI=452|1|1|1|0.6|0.5|6|310|431 |
| chr1_2 | exon | 66611426 | 66611700 | 66611426 | ID=Msa0086020-mRNA-1:exon:22479;Parent=Msa0086020-mRNA-1 |
| chr1_2 | exon | 66611822 | 66611893 | 66611822 | ID=Msa0086020-mRNA-1:exon:22480;Parent=Msa0086020-mRNA-1 |
| chr1_2 | exon | 66612371 | 66612823 | 66612371 | ID=Msa0086020-mRNA-1:exon:22481;Parent=Msa0086020-mRNA-1 |
| chr1_2 | exon | 66613120 | 66613207 | 66613120 | ID=Msa0086020-mRNA-1:exon:22482;Parent=Msa0086020-mRNA-1 |
| chr1_2 | exon | 66613642 | 66613774 | 66613642 | ID=Msa0086020-mRNA-1:exon:22483;Parent=Msa0086020-mRNA-1 |
| chr1_2 | exon | 66614184 | 66615220 | 66614184 | ID=Msa0086020-mRNA-1:exon:22484;Parent=Msa0086020-mRNA-1 |
| chr1_2 | five_prime_UTR | 66611426 | 66611700 | 66611426 | ID=Msa0086020-mRNA-1:five_prime_utr;Parent=Msa0086020-mRNA-1 |
| chr1_2 | five_prime_UTR | 66611822 | 66611893 | 66611822 | ID=Msa0086020-mRNA-1:five_prime_utr;Parent=Msa0086020-mRNA-1 |
| chr1_2 | five_prime_UTR | 66612371 | 66612475 | 66612371 | ID=Msa0086020-mRNA-1:five_prime_utr;Parent=Msa0086020-mRNA-1 |
| chr1_2 | CDS | 66612476 | 66612823 | 66612476 | ID=Msa0086020-mRNA-1:cds;Parent=Msa0086020-mRNA-1 |
| chr1_2 | CDS | 66613120 | 66613207 | 66613120 | ID=Msa0086020-mRNA-1:cds;Parent=Msa0086020-mRNA-1 |
| chr1_2 | CDS | 66613642 | 66613774 | 66613642 | ID=Msa0086020-mRNA-1:cds;Parent=Msa0086020-mRNA-1 |
| chr1_2 | CDS | 66614184 | 66614910 | 66614184 | ID=Msa0086020-mRNA-1:cds;Parent=Msa0086020-mRNA-1 |
| chr1_2 | three_prime_UTR | 66614911 | 66615220 | 66614911 | ID=Msa0086020-mRNA-1:three_prime_utr;Parent=Msa0086020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
