AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1353800


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1353800 MtrunA17_Chr8g0347051 96.304 460 14 1 1 457 1 460 0.0 906
Msa1353800 MtrunA17_Chr1g0150361 95.228 461 16 2 1 456 1 460 0.0 827
Msa1353800 MtrunA17_Chr4g0064711 60.123 326 128 1 134 457 57 382 1.27e-135 399
Msa1353800 MtrunA17_Chr8g0347041 98.901 91 1 0 132 222 88 178 7.42e-60 196
Msa1353800 MtrunA17_Chr8g0347341 97.802 91 2 0 132 222 88 178 1.14e-57 192
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1353800 AT4G31780.2 67.888 464 133 7 1 457 1 455 0.0 606
Msa1353800 AT4G31780.3 64.286 490 133 8 1 457 1 481 0.0 592
Msa1353800 AT4G31780.1 84.342 281 42 1 179 457 8 288 2.17e-173 492
Msa1353800 AT2G11810.1 59.574 329 131 1 131 457 58 386 5.60e-138 405
Msa1353800 AT5G20410.1 58.982 334 135 1 126 457 49 382 1.49e-136 402
Msa1353800 AT2G11810.2 57.237 304 128 1 131 432 58 361 1.44e-122 362
Msa1353800 AT2G11810.3 56.863 306 130 1 131 434 58 363 1.75e-122 363
Msa1353800 AT2G11810.4 61.303 261 99 1 199 457 3 263 3.54e-108 325

Find 134 sgRNAs with CRISPR-Local

Find 362 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCCATGCATTCTTCAATTT+TGG 0.143640 tig0014038:-47085 None:intergenic
GTAGGCCATAAATCTTTATT+TGG 0.144917 tig0014038:-45327 None:intergenic
GATGAACTAAGGAGAGATTT+AGG 0.146974 tig0014038:+46272 Msa1353800:CDS
AGTTAATTATTGTAATAAAA+TGG 0.199176 tig0014038:-42579 None:intergenic
TCCAGCCTTCATTGCCCTTT+TGG 0.207960 tig0014038:-45293 None:intergenic
AGGTGTTTATTACCGATTTA+TGG 0.217636 tig0014038:+43845 Msa1353800:intron
CAAACCCAAATAAAGATTTA+TGG 0.240574 tig0014038:+45322 Msa1353800:CDS
GGGAATGGTGTTGGTGGAAA+TGG 0.257208 tig0014038:+42963 Msa1353800:CDS
GGTTGAAGAGGTTAAGGTTT+TGG 0.268173 tig0014038:-42516 None:intergenic
GTAATAAAATGGAATATAAA+TGG 0.278091 tig0014038:-42568 None:intergenic
GGTGGTGGTGTTGGTGGTGA+GGG 0.289092 tig0014038:+42942 Msa1353800:CDS
TGGTGGTGGTGTTGGTGGTG+AGG 0.295208 tig0014038:+42941 Msa1353800:CDS
TCCGATTGGATTCGCTTCGC+TGG 0.325021 tig0014038:+42902 Msa1353800:CDS
GTGAACATGCTTCTGAAGTT+AGG 0.332228 tig0014038:-42713 None:intergenic
ATGAACTAAGGAGAGATTTA+GGG 0.343617 tig0014038:+46273 Msa1353800:CDS
ATGTAATCATTTAAAATAAT+AGG 0.345699 tig0014038:-47255 None:intergenic
ACAAACTCAGTTCTATTGAT+TGG 0.345962 tig0014038:+46453 Msa1353800:CDS
AGAATATGGCGATGATTATC+AGG 0.361052 tig0014038:+43127 Msa1353800:CDS
ATGGCCTCTGCAATTGTCCC+TGG 0.362907 tig0014038:-47219 None:intergenic
TAATGAGGTTGAAGAGGTTA+AGG 0.368271 tig0014038:-42522 None:intergenic
TGCACACTGATTATTATATC+AGG 0.373255 tig0014038:-45027 None:intergenic
TAGGCCATAAATCTTTATTT+GGG 0.377476 tig0014038:-45326 None:intergenic
TCTTCCTGCTGTATTATTGA+TGG 0.378039 tig0014038:+46307 Msa1353800:CDS
TGGCATACCTTTGGCCGAAC+AGG 0.379500 tig0014038:-45373 None:intergenic
TTTATAAAGGAAGGTCTAAC+AGG 0.381701 tig0014038:-45349 None:intergenic
GTGGTGGTGTTGGTGGTGAG+GGG 0.391464 tig0014038:+42943 Msa1353800:CDS
CTTCCTGCTGTATTATTGAT+GGG 0.393576 tig0014038:+46308 Msa1353800:CDS
GGTGGTGAGGGGAATGGTGT+TGG 0.397626 tig0014038:+42954 Msa1353800:CDS
GGTGTTGGTGGTGAGGGGAA+TGG 0.402477 tig0014038:+42948 Msa1353800:CDS
GTTGATGACGGTGGTGGTGG+TGG 0.406284 tig0014038:+42927 Msa1353800:CDS
TTTGAATTAGGTTCACGAAT+TGG 0.407713 tig0014038:+42657 Msa1353800:CDS
GCGGTGGTGGTTATAAGTTT+AGG 0.412585 tig0014038:+42829 Msa1353800:CDS
GGAATGGTGTTGGTGGAAAT+GGG 0.413937 tig0014038:+42964 Msa1353800:CDS
TGGCCGAACAGGCTTTATAA+AGG 0.422561 tig0014038:-45362 None:intergenic
TGTTGGTGGAAATGGGAATC+GGG 0.425641 tig0014038:+42971 Msa1353800:CDS
TTGTGGAGGATGACCTACTA+TGG 0.432904 tig0014038:+43937 Msa1353800:CDS
GTGTTGGTGGAAATGGGAAT+CGG 0.433262 tig0014038:+42970 Msa1353800:CDS
GGAGTTGATGACGGTGGTGG+TGG 0.440641 tig0014038:+42924 Msa1353800:CDS
CCGATTGGATTCGCTTCGCT+GGG 0.440816 tig0014038:+42903 Msa1353800:CDS
CTTCCTTTATAAAGCCTGTT+CGG 0.450461 tig0014038:+45359 Msa1353800:CDS
AAATGATTACATTGCCGGGC+AGG 0.456227 tig0014038:+47266 Msa1353800:CDS
TGATGTGGAAGATGAAGGAT+TGG 0.459972 tig0014038:+42995 Msa1353800:CDS
TTGGGATTGAAGAGTGGTGA+GGG 0.460128 tig0014038:+43014 Msa1353800:CDS
GAGTTGAGTTGAGTTGAGTT+GGG 0.461490 tig0014038:-42379 None:intergenic
GCCAAAAGGGCAATGAAGGC+TGG 0.464526 tig0014038:+45292 Msa1353800:CDS
CGGGTTGATGTGGAAGATGA+AGG 0.465885 tig0014038:+42990 Msa1353800:CDS
TGAGTTGAGTTGAGTTGAGT+TGG 0.466063 tig0014038:-42380 None:intergenic
TGCCCGAGCAGTAGCTTCAA+TGG 0.468895 tig0014038:-46351 None:intergenic
TAGTGTATCAATACCTTCAC+TGG 0.470804 tig0014038:-46482 None:intergenic
GGTGAGGGGAATGGTGTTGG+TGG 0.474033 tig0014038:+42957 Msa1353800:CDS
AATAGGCAGGCCTCGAATCA+TGG 0.478545 tig0014038:-47238 None:intergenic
GAAGCTACTGCTCGGGCACT+TGG 0.480129 tig0014038:+46356 Msa1353800:CDS
CAACTACAGATGTTGCCAAA+AGG 0.481512 tig0014038:+45278 Msa1353800:CDS
CCCAGCGAAGCGAATCCAAT+CGG 0.484023 tig0014038:-42903 None:intergenic
TGTTGCCAAAAGGGCAATGA+AGG 0.487028 tig0014038:+45288 Msa1353800:CDS
AACTACAGATGTTGCCAAAA+GGG 0.488345 tig0014038:+45279 Msa1353800:CDS
TAATTAGAAAGAAGTGAAGC+TGG 0.489003 tig0014038:-42735 None:intergenic
TACCAAAATTGAAGAATGCA+TGG 0.490489 tig0014038:+47083 Msa1353800:CDS
TGGCCTCTGCAATTGTCCCT+GGG 0.498243 tig0014038:-47218 None:intergenic
GAGAGATTTAGGGATGGATG+AGG 0.498586 tig0014038:+46283 Msa1353800:CDS
TTCATTCATCGGAGAAAATG+AGG 0.501011 tig0014038:-42481 None:intergenic
TTCCTGCTGTATTATTGATG+GGG 0.501628 tig0014038:+46309 Msa1353800:CDS
AATTTCAGAGTTGCAAGTTG+TGG 0.505699 tig0014038:+47385 Msa1353800:three_prime_UTR
TCCCATTGAAGCTACTGCTC+GGG 0.505735 tig0014038:+46349 Msa1353800:CDS
TTCTCTAATAGGATGAACTA+AGG 0.511639 tig0014038:+46261 Msa1353800:intron
AGTTTAAACAATAGCGGTGG+TGG 0.514164 tig0014038:+42816 Msa1353800:CDS
GCCCGAGCAGTAGCTTCAAT+GGG 0.516727 tig0014038:-46350 None:intergenic
ACGTGGGGCCGTTCCATAGT+AGG 0.519039 tig0014038:-43950 None:intergenic
TGAGGGGAAGAAAGTGAAGA+AGG 0.529010 tig0014038:+43031 Msa1353800:CDS
CTGTTAGGGTTCATTGTGAG+AGG 0.529931 tig0014038:+42877 Msa1353800:CDS
AAATGGGAATCGGGTTGATG+TGG 0.534846 tig0014038:+42980 Msa1353800:CDS
ATTGTTTAAACTGAGTGAAA+CGG 0.538925 tig0014038:-42805 None:intergenic
GTGTGAGGTTGTTGAAGTAA+AGG 0.540601 tig0014038:-42758 None:intergenic
CTGGGAGTTGATGACGGTGG+TGG 0.541803 tig0014038:+42921 Msa1353800:CDS
TATAAAGCCTGTTCGGCCAA+AGG 0.541804 tig0014038:+45366 Msa1353800:CDS
GTCCCATTGAAGCTACTGCT+CGG 0.543348 tig0014038:+46348 Msa1353800:CDS
AGAGGAACGTGTTGCATCAG+TGG 0.547034 tig0014038:-45051 None:intergenic
TGTTTGTTTGTTTATTGCAG+AGG 0.547926 tig0014038:-42441 None:intergenic
TCCTGCTGTATTATTGATGG+GGG 0.548155 tig0014038:+46310 Msa1353800:CDS
CTTTGTAATAATGCAATCAC+AGG 0.552893 tig0014038:-47109 None:intergenic
TTTGTGTAATGAGGTTGAAG+AGG 0.554343 tig0014038:-42528 None:intergenic
CTGTGATTGCATTATTACAA+AGG 0.560129 tig0014038:+47110 Msa1353800:CDS
TGTGTGCTCAGACCATAAAT+CGG 0.560704 tig0014038:-43857 None:intergenic
GGAATTTGATTGAACGGCCA+AGG 0.560974 tig0014038:-43880 None:intergenic
CAACTTCAACATTCATAGCT+CGG 0.561242 tig0014038:+43998 Msa1353800:CDS
GCTTCGCTGGGAGTTGATGA+CGG 0.562992 tig0014038:+42915 Msa1353800:CDS
ATTGCAGAGGCCATGATTCG+AGG 0.563068 tig0014038:+47228 Msa1353800:CDS
AATCATTTAAAATAATAGGC+AGG 0.569875 tig0014038:-47251 None:intergenic
CATTGTGAGAGGATTCCGAT+TGG 0.571847 tig0014038:+42888 Msa1353800:CDS
GGAGATTTATTAAATGACGA+GGG 0.574821 tig0014038:+46377 Msa1353800:CDS
AGTGAAATGTGTTCATTCAT+CGG 0.575172 tig0014038:-42492 None:intergenic
CGAACAGGCTTTATAAAGGA+AGG 0.575344 tig0014038:-45358 None:intergenic
AAAGTTAGCTTGCACTATTG+TGG 0.577538 tig0014038:+47347 Msa1353800:CDS
CAGAACTAAACTAACCATGT+TGG 0.579591 tig0014038:-45150 None:intergenic
TGAGAACCACATTACCTGCC+CGG 0.584401 tig0014038:-47280 None:intergenic
ATCACAAGAATCTGACCTGT+GGG 0.585615 tig0014038:-46404 None:intergenic
TGATTGGAAGATTCCAGTGA+AGG 0.586288 tig0014038:+46469 Msa1353800:CDS
TTCATGACAAGGTCGAGGAA+TGG 0.587699 tig0014038:-47309 None:intergenic
ACTAAACTAACCATGTTGGA+TGG 0.594783 tig0014038:-45146 None:intergenic
ACATTGCCGGGCAGGTAATG+TGG 0.595199 tig0014038:+47274 Msa1353800:CDS
TTGATGAGTGATACTGGTGG+TGG 0.596075 tig0014038:+43062 Msa1353800:CDS
TGGGATTGAAGAGTGGTGAG+GGG 0.596691 tig0014038:+43015 Msa1353800:CDS
CCTGCTGTATTATTGATGGG+GGG 0.598824 tig0014038:+46311 Msa1353800:CDS
ACCAAAATTGAAGAATGCAT+GGG 0.604354 tig0014038:+47084 Msa1353800:CDS
GATGTGGAAGATGAAGGATT+GGG 0.606638 tig0014038:+42996 Msa1353800:CDS
TGAGCACATGCCATCCAACA+TGG 0.607260 tig0014038:+45136 Msa1353800:CDS
TAAAGGAAGGTCTAACAGGT+AGG 0.611675 tig0014038:-45345 None:intergenic
GGTCAGATTCTTGTGATCTG+TGG 0.618567 tig0014038:+46410 Msa1353800:CDS
TGGCCCAGGGACAATTGCAG+AGG 0.622682 tig0014038:+47215 Msa1353800:CDS
TCACTCAGTTTAAACAATAG+CGG 0.624973 tig0014038:+42810 Msa1353800:CDS
CTTCAACAACCTCACACGTG+TGG 0.626249 tig0014038:+42764 Msa1353800:CDS
CTCAGTTTAAACAATAGCGG+TGG 0.637662 tig0014038:+42813 Msa1353800:CDS
ACTAAGGAGAGATTTAGGGA+TGG 0.645174 tig0014038:+46277 Msa1353800:CDS
TGGAGATTTATTAAATGACG+AGG 0.645340 tig0014038:+46376 Msa1353800:CDS
TGGTGAAACATGGACCGTTG+TGG 0.648644 tig0014038:+43920 Msa1353800:CDS
TATGGTCTGAGCACACACCT+TGG 0.651270 tig0014038:+43863 Msa1353800:CDS
CTTGACCTCAAAATGCGAAG+AGG 0.652018 tig0014038:-45069 None:intergenic
GAGATTTATTAAATGACGAG+GGG 0.652249 tig0014038:+46378 Msa1353800:CDS
TTGACTGATGAACTAGACGT+GGG 0.657276 tig0014038:-43966 None:intergenic
ACTATAGCACTGTTATGCAA+CGG 0.658285 tig0014038:-47437 None:intergenic
TTTGACTGATGAACTAGACG+TGG 0.659531 tig0014038:-43967 None:intergenic
GATCACAAGAATCTGACCTG+TGG 0.659557 tig0014038:-46405 None:intergenic
GAGGATGACCTACTATGGAA+CGG 0.659969 tig0014038:+43942 Msa1353800:CDS
AGATTTATTAAATGACGAGG+GGG 0.661667 tig0014038:+46379 Msa1353800:CDS
ATTGGGATTGAAGAGTGGTG+AGG 0.665244 tig0014038:+43013 Msa1353800:CDS
TTGTGAAATAGTGTCTATAG+CGG 0.667806 tig0014038:-47461 None:intergenic
ATGATGATGCCACACGTGTG+AGG 0.673938 tig0014038:-42773 None:intergenic
GAAGGATTGGGATTGAAGAG+TGG 0.674436 tig0014038:+43008 Msa1353800:CDS
GCTCAAATCTGTAATAACTG+TGG 0.689167 tig0014038:-45118 None:intergenic
TGAAACATGGACCGTTGTGG+AGG 0.709765 tig0014038:+43923 Msa1353800:CDS
TAGTAGGTCATCCTCCACAA+CGG 0.715366 tig0014038:-43934 None:intergenic
TGACTGATGAACTAGACGTG+GGG 0.741650 tig0014038:-43965 None:intergenic
TCGCTGGGAGTTGATGACGG+TGG 0.773048 tig0014038:+42918 Msa1353800:CDS
TGTTACAAAAGAACCCAATG+CGG 0.774333 tig0014038:+42632 Msa1353800:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTTAATTATTGTAATAAAA+TGG - tig0014038:42582-42601 None:intergenic 10.0%
!! AATTGTTTGATATTTATTAT+GGG + tig0014038:45943-45962 Msa1353800:intron 10.0%
!! TAAATAAATAAATGTTGATA+TGG + tig0014038:47011-47030 Msa1353800:intron 10.0%
!!! ATGTAATCATTTAAAATAAT+AGG - tig0014038:47258-47277 None:intergenic 10.0%
!! GTAATAAAATGGAATATAAA+TGG - tig0014038:42571-42590 None:intergenic 15.0%
!!! ATTTTTAGGTAAAAAAGTTA+GGG + tig0014038:43416-43435 Msa1353800:intron 15.0%
!!! TCTTATTTCTTGTATTTTTT+AGG + tig0014038:45224-45243 Msa1353800:intron 15.0%
!! AACCTCAAATAATAAATAAA+CGG - tig0014038:45673-45692 None:intergenic 15.0%
!! AAGATATTAAGTGTAAAATA+GGG - tig0014038:45839-45858 None:intergenic 15.0%
!!! CTCAAAATTCAAATTTTTAA+TGG + tig0014038:45905-45924 Msa1353800:intron 15.0%
!! CAATTGTTTGATATTTATTA+TGG + tig0014038:45942-45961 Msa1353800:intron 15.0%
!!! TTCACATTTTTAATTATTCT+GGG - tig0014038:46773-46792 None:intergenic 15.0%
!!! TTTCACATTTTTAATTATTC+TGG - tig0014038:46774-46793 None:intergenic 15.0%
!! TTGGTAAAAACAATAATTTA+GGG - tig0014038:47041-47060 None:intergenic 15.0%
!! ATTGGTAAAAACAATAATTT+AGG - tig0014038:47042-47061 None:intergenic 15.0%
!! AAATAAAAAAATTCATGACA+AGG - tig0014038:47323-47342 None:intergenic 15.0%
!!! TTTGTTAATTTTGTGTAATG+AGG - tig0014038:42540-42559 None:intergenic 20.0%
!!! GATTTTTAGGTAAAAAAGTT+AGG + tig0014038:43415-43434 Msa1353800:intron 20.0%
!!! GTTGTTTTTGTAAGTTATTT+TGG + tig0014038:43513-43532 Msa1353800:intron 20.0%
!! TAGTAGAATGAGATTAAAAT+AGG + tig0014038:43542-43561 Msa1353800:intron 20.0%
!! TTTGACGATTAATTTATGTA+CGG + tig0014038:43666-43685 Msa1353800:intron 20.0%
!! TAACTAACAACTTAAAAACA+GGG - tig0014038:44183-44202 None:intergenic 20.0%
!! TTGAAAATAACTTTATACGT+AGG + tig0014038:44732-44751 Msa1353800:intron 20.0%
!! TGTATAAAACAATTCAGAAA+AGG - tig0014038:45465-45484 None:intergenic 20.0%
!!! AATTGTTTTATACAATGAGA+TGG + tig0014038:45471-45490 Msa1353800:intron 20.0%
!!! ATTGTTTTATACAATGAGAT+GGG + tig0014038:45472-45491 Msa1353800:intron 20.0%
!! TTGTTAAATATGATTGTTCA+TGG + tig0014038:45794-45813 Msa1353800:intron 20.0%
!! GAAGATATTAAGTGTAAAAT+AGG - tig0014038:45840-45859 None:intergenic 20.0%
!! TATTTCATGTTTATGCAATT+TGG + tig0014038:46201-46220 Msa1353800:intron 20.0%
!!! TTACTTCAATACTCTTATTT+AGG - tig0014038:46727-46746 None:intergenic 20.0%
!!! AAGAGTATTGAAGTAAAAAA+TGG + tig0014038:46731-46750 Msa1353800:intron 20.0%
!! TGGTAAAAACAATAATTTAG+GGG - tig0014038:47040-47059 None:intergenic 20.0%
!!! ATTGTTTTTACCAATGTTTT+AGG + tig0014038:47047-47066 Msa1353800:intron 20.0%
!!! AATCATTTAAAATAATAGGC+AGG - tig0014038:47254-47273 None:intergenic 20.0%
!!! ATTTTAAATGATTACATTGC+CGG + tig0014038:47261-47280 Msa1353800:CDS 20.0%
! ATTGTTTAAACTGAGTGAAA+CGG - tig0014038:42808-42827 None:intergenic 25.0%
!!! ATGATTTTAATAGAGCTGTT+AGG + tig0014038:42862-42881 Msa1353800:CDS 25.0%
!!! TGATTTTAATAGAGCTGTTA+GGG + tig0014038:42863-42882 Msa1353800:CDS 25.0%
! AAGAAAATGACAGAATTGAA+TGG + tig0014038:43220-43239 Msa1353800:intron 25.0%
! GTAATTAGAGGAATGAAATA+TGG + tig0014038:43370-43389 Msa1353800:intron 25.0%
!!! ATTTTGTTTGTTGAGTAATG+TGG + tig0014038:43464-43483 Msa1353800:intron 25.0%
!! TGATTATGTAAAATCGATTC+TGG + tig0014038:43598-43617 Msa1353800:intron 25.0%
!! ATGAATAATTTGCAAGTGAA+TGG + tig0014038:43699-43718 Msa1353800:intron 25.0%
!!! AATGGTAATTTTAGGATTGA+GGG + tig0014038:43717-43736 Msa1353800:intron 25.0%
!!! CTTTTAGGAATTTGATTGAA+CGG - tig0014038:43889-43908 None:intergenic 25.0%
!!! TCCTAAAAGCTATAGTTTTT+TGG + tig0014038:43900-43919 Msa1353800:CDS 25.0%
!! ACCAAAAAACTATAGCTTTT+AGG - tig0014038:43904-43923 None:intergenic 25.0%
!!! TATAGTTTTTTGGTGAAACA+TGG + tig0014038:43910-43929 Msa1353800:CDS 25.0%
! AACTTATCAGTTATCCATTA+CGG - tig0014038:44108-44127 None:intergenic 25.0%
! GTAACTAACAACTTAAAAAC+AGG - tig0014038:44184-44203 None:intergenic 25.0%
!!! TTTAAGTTGTTAGTTACCAT+AGG + tig0014038:44187-44206 Msa1353800:intron 25.0%
! ATATTGTTTGAATGATCCTA+TGG - tig0014038:44206-44225 None:intergenic 25.0%
!! ATGTGCAATATACAGATTTT+CGG + tig0014038:44332-44351 Msa1353800:intron 25.0%
! TTACAATAAAAATGACTGCA+CGG + tig0014038:44391-44410 Msa1353800:intron 25.0%
!! AGATATTTTTCATCCAATGT+GGG - tig0014038:44713-44732 None:intergenic 25.0%
!! AAGATATTTTTCATCCAATG+TGG - tig0014038:44714-44733 None:intergenic 25.0%
! AATAACATTCTCTTAGAATC+TGG - tig0014038:44809-44828 None:intergenic 25.0%
!!! TCTTGTATATTTTTACAGTG+AGG + tig0014038:44978-44997 Msa1353800:intron 25.0%
!! TCAGACAATAGGTAATATTT+TGG - tig0014038:45196-45215 None:intergenic 25.0%
! CAAACCCAAATAAAGATTTA+TGG + tig0014038:45322-45341 Msa1353800:CDS 25.0%
!! TAGGCCATAAATCTTTATTT+GGG - tig0014038:45329-45348 None:intergenic 25.0%
!! GTTTAGTAATTCAACTTGTT+AGG + tig0014038:45525-45544 Msa1353800:intron 25.0%
! ATAAATAAACGGCAAAATCA+TGG - tig0014038:45662-45681 None:intergenic 25.0%
!! TGCCGTTTATTTATTATTTG+AGG + tig0014038:45668-45687 Msa1353800:intron 25.0%
! TTAAATATGATTGTTCATGG+TGG + tig0014038:45797-45816 Msa1353800:intron 25.0%
! CTAAAATTATAATAGTCCGT+TGG - tig0014038:45992-46011 None:intergenic 25.0%
!!! TTTTAGTTTAGTGTACATGA+TGG + tig0014038:46006-46025 Msa1353800:intron 25.0%
! TATTGATACACTAATTGTTC+CGG + tig0014038:46492-46511 Msa1353800:intron 25.0%
! AGCAAAAAAAATGTTACTCA+TGG + tig0014038:46644-46663 Msa1353800:intron 25.0%
!! TTCAATACTCTTATTTAGGA+CGG - tig0014038:46723-46742 None:intergenic 25.0%
! TTATAGTTATAATTGCTGAG+CGG + tig0014038:46801-46820 Msa1353800:intron 25.0%
! TTAGATATTCATTGTACAAG+AGG - tig0014038:46892-46911 None:intergenic 25.0%
!! ACAGAAAGTTTTCTTTCTTA+TGG + tig0014038:46965-46984 Msa1353800:intron 25.0%
!! CAGAAAGTTTTCTTTCTTAT+GGG + tig0014038:46966-46985 Msa1353800:intron 25.0%
!!! TCTTTTTTTGTTGCTTTTGT+AGG + tig0014038:47191-47210 Msa1353800:intron 25.0%
!! TTTTAAATGATTACATTGCC+GGG + tig0014038:47262-47281 Msa1353800:CDS 25.0%
!!! GGTTTTTAAGTAAGTGGATT+GGG - tig0014038:42361-42380 None:intergenic 30.0%
TGTTTGTTTGTTTATTGCAG+AGG - tig0014038:42444-42463 None:intergenic 30.0%
AGTGAAATGTGTTCATTCAT+CGG - tig0014038:42495-42514 None:intergenic 30.0%
TTTGAATTAGGTTCACGAAT+TGG + tig0014038:42657-42676 Msa1353800:CDS 30.0%
TAATTAGAAAGAAGTGAAGC+TGG - tig0014038:42738-42757 None:intergenic 30.0%
TCACTCAGTTTAAACAATAG+CGG + tig0014038:42810-42829 Msa1353800:CDS 30.0%
!! TTGATTTTGATGAGTGATAC+TGG + tig0014038:43056-43075 Msa1353800:CDS 30.0%
!!! GCTGCTTTTTATCAAGAATA+TGG + tig0014038:43113-43132 Msa1353800:CDS 30.0%
! TTAAGAGCAAGGAGATTTTT+AGG + tig0014038:43402-43421 Msa1353800:intron 30.0%
TTTAGGTAAAAAAGTTAGGG+TGG + tig0014038:43419-43438 Msa1353800:intron 30.0%
TTAGGTAAAAAAGTTAGGGT+GGG + tig0014038:43420-43439 Msa1353800:intron 30.0%
! AAATCGATTCTGGTTAAAAG+TGG + tig0014038:43608-43627 Msa1353800:intron 30.0%
! AATCGATTCTGGTTAAAAGT+GGG + tig0014038:43609-43628 Msa1353800:intron 30.0%
!!! CTAACTTGGAACTAGTTTTT+TGG + tig0014038:43634-43653 Msa1353800:intron 30.0%
! TGCAAGTGAATGGTAATTTT+AGG + tig0014038:43709-43728 Msa1353800:intron 30.0%
!!! GAATGGTAATTTTAGGATTG+AGG + tig0014038:43716-43735 Msa1353800:intron 30.0%
!!! GTTGTGTTTTGTTTACACTT+TGG + tig0014038:43808-43827 Msa1353800:intron 30.0%
!! AGGTGTTTATTACCGATTTA+TGG + tig0014038:43845-43864 Msa1353800:intron 30.0%
TGAAGTTATTTGACAAGAAC+TGG - tig0014038:44052-44071 None:intergenic 30.0%
TGAATTAGTATATGCCGTAA+TGG + tig0014038:44091-44110 Msa1353800:intron 30.0%
ATAAATGCATGTATGATGTG+TGG - tig0014038:44308-44327 None:intergenic 30.0%
TCCACATATAAAGATGTTTG+CGG - tig0014038:44553-44572 None:intergenic 30.0%
CAAACATCTTTATATGTGGA+AGG + tig0014038:44553-44572 Msa1353800:intron 30.0%
TGATACAATCTTAGAACTTG+AGG - tig0014038:44588-44607 None:intergenic 30.0%
! CAGTAGTTATTGTAATTTGC+TGG + tig0014038:44860-44879 Msa1353800:intron 30.0%
GATGCATATATTGTTTGTTC+TGG + tig0014038:44887-44906 Msa1353800:intron 30.0%
! TGCACACTGATTATTATATC+AGG - tig0014038:45030-45049 None:intergenic 30.0%
AGATGTCAAAATCAGACAAT+AGG - tig0014038:45207-45226 None:intergenic 30.0%
GTAGGCCATAAATCTTTATT+TGG - tig0014038:45330-45349 None:intergenic 30.0%
TTTATAAAGGAAGGTCTAAC+AGG - tig0014038:45352-45371 None:intergenic 30.0%
TTCTTGACTTCTTATAGCTA+TGG + tig0014038:45398-45417 Msa1353800:intron 30.0%
CAATTCAGAAAAGGTCATTT+GGG - tig0014038:45456-45475 None:intergenic 30.0%
ACAATTCAGAAAAGGTCATT+TGG - tig0014038:45457-45476 None:intergenic 30.0%
ATACAATGAGATGGGATAAT+AGG + tig0014038:45480-45499 Msa1353800:intron 30.0%
CATTTATGACAACAATGAGA+CGG + tig0014038:45577-45596 Msa1353800:intron 30.0%
ATTTATGACAACAATGAGAC+GGG + tig0014038:45578-45597 Msa1353800:intron 30.0%
! GGTTCTGATTCTTTAACTAA+AGG + tig0014038:45964-45983 Msa1353800:intron 30.0%
CTATTAACCATGTGTTTGAT+TGG + tig0014038:46142-46161 Msa1353800:intron 30.0%
TTCTCTAATAGGATGAACTA+AGG + tig0014038:46261-46280 Msa1353800:intron 30.0%
ATGAACTAAGGAGAGATTTA+GGG + tig0014038:46273-46292 Msa1353800:CDS 30.0%
TGGAGATTTATTAAATGACG+AGG + tig0014038:46376-46395 Msa1353800:CDS 30.0%
GGAGATTTATTAAATGACGA+GGG + tig0014038:46377-46396 Msa1353800:CDS 30.0%
GAGATTTATTAAATGACGAG+GGG + tig0014038:46378-46397 Msa1353800:CDS 30.0%
AGATTTATTAAATGACGAGG+GGG + tig0014038:46379-46398 Msa1353800:CDS 30.0%
ACAAACTCAGTTCTATTGAT+TGG + tig0014038:46453-46472 Msa1353800:CDS 30.0%
! AATCTAGAACATGCATATAC+TGG - tig0014038:46538-46557 None:intergenic 30.0%
!! TTTACCAATGTTTTAGGTCA+TGG + tig0014038:47053-47072 Msa1353800:intron 30.0%
!! TTACCAATGTTTTAGGTCAT+GGG + tig0014038:47054-47073 Msa1353800:intron 30.0%
TACCAAAATTGAAGAATGCA+TGG + tig0014038:47083-47102 Msa1353800:CDS 30.0%
ACCAAAATTGAAGAATGCAT+GGG + tig0014038:47084-47103 Msa1353800:CDS 30.0%
CTTTGTAATAATGCAATCAC+AGG - tig0014038:47112-47131 None:intergenic 30.0%
CTGTGATTGCATTATTACAA+AGG + tig0014038:47110-47129 Msa1353800:CDS 30.0%
GATTGCATTATTACAAAGGT+TGG + tig0014038:47114-47133 Msa1353800:intron 30.0%
TTGTGAAATAGTGTCTATAG+CGG - tig0014038:47464-47483 None:intergenic 30.0%
!!! GGGTTTTTAAGTAAGTGGAT+TGG - tig0014038:42362-42381 None:intergenic 35.0%
!!! GAGTTGGGTTTTTAAGTAAG+TGG - tig0014038:42367-42386 None:intergenic 35.0%
TTCATTCATCGGAGAAAATG+AGG - tig0014038:42484-42503 None:intergenic 35.0%
TAATGAGGTTGAAGAGGTTA+AGG - tig0014038:42525-42544 None:intergenic 35.0%
TTTGTGTAATGAGGTTGAAG+AGG - tig0014038:42531-42550 None:intergenic 35.0%
TGTTACAAAAGAACCCAATG+CGG + tig0014038:42632-42651 Msa1353800:CDS 35.0%
CCTAATTCAAAAACCGCATT+GGG - tig0014038:42648-42667 None:intergenic 35.0%
ACCTAATTCAAAAACCGCAT+TGG - tig0014038:42649-42668 None:intergenic 35.0%
!! ATTTTGATGAGTGATACTGG+TGG + tig0014038:43059-43078 Msa1353800:CDS 35.0%
AGAATATGGCGATGATTATC+AGG + tig0014038:43127-43146 Msa1353800:CDS 35.0%
TGTCTGTGTTAGGTAATTAG+AGG + tig0014038:43358-43377 Msa1353800:intron 35.0%
TAGGTAAAAAAGTTAGGGTG+GGG + tig0014038:43421-43440 Msa1353800:intron 35.0%
! ATCGATTCTGGTTAAAAGTG+GGG + tig0014038:43610-43629 Msa1353800:intron 35.0%
!!! AATTTTAGGATTGAGGGTCA+TGG + tig0014038:43723-43742 Msa1353800:intron 35.0%
CAACTTCAACATTCATAGCT+CGG + tig0014038:43998-44017 Msa1353800:CDS 35.0%
TGACTCATACATGAAAGTCA+GGG + tig0014038:44139-44158 Msa1353800:intron 35.0%
GTTTCATTGTCGTTATGAAC+TGG + tig0014038:44245-44264 Msa1353800:intron 35.0%
TATGAACTGGATTTCTCTAG+TGG + tig0014038:44258-44277 Msa1353800:intron 35.0%
AACTTGGCAATATTTCAGCA+CGG + tig0014038:44415-44434 Msa1353800:intron 35.0%
CTGTCATGCACTTTATTGTT+AGG - tig0014038:44465-44484 None:intergenic 35.0%
CCACATATAAAGATGTTTGC+GGG - tig0014038:44552-44571 None:intergenic 35.0%
ATTGTATCAGAGCCTATTCA+AGG + tig0014038:44599-44618 Msa1353800:intron 35.0%
TAGATTTGACAAATGGAGCA+TGG - tig0014038:44664-44683 None:intergenic 35.0%
CTAACTCAACCTTACAAAAC+CGG - tig0014038:44779-44798 None:intergenic 35.0%
AGTATAATATCACGTGTCAG+AGG + tig0014038:44946-44965 Msa1353800:intron 35.0%
! TTTTACAGTGAGGTTGCTAA+AGG + tig0014038:44988-45007 Msa1353800:intron 35.0%
GCTCAAATCTGTAATAACTG+TGG - tig0014038:45121-45140 None:intergenic 35.0%
ACTAAACTAACCATGTTGGA+TGG - tig0014038:45149-45168 None:intergenic 35.0%
CAGAACTAAACTAACCATGT+TGG - tig0014038:45153-45172 None:intergenic 35.0%
!! CAACATGGTTAGTTTAGTTC+TGG + tig0014038:45151-45170 Msa1353800:intron 35.0%
AACTACAGATGTTGCCAAAA+GGG + tig0014038:45279-45298 Msa1353800:CDS 35.0%
CTTCCTTTATAAAGCCTGTT+CGG + tig0014038:45359-45378 Msa1353800:CDS 35.0%
GCTATAAGAAGTCAAGAACA+TGG - tig0014038:45396-45415 None:intergenic 35.0%
TCTTATAGCTATGGCATGAT+TGG + tig0014038:45407-45426 Msa1353800:intron 35.0%
CGTCTCATTGTTGTCATAAA+TGG - tig0014038:45579-45598 None:intergenic 35.0%
!! AGCCATTTTCTTTCTTGCTA+AGG + tig0014038:45606-45625 Msa1353800:intron 35.0%
!! GCCATTTTCTTTCTTGCTAA+GGG + tig0014038:45607-45626 Msa1353800:intron 35.0%
ACCCTTAGCAAGAAAGAAAA+TGG - tig0014038:45611-45630 None:intergenic 35.0%
! TTTTCTTTCTTGCTAAGGGT+AGG + tig0014038:45611-45630 Msa1353800:intron 35.0%
GCTCAGATTAACAATAGATG+TGG - tig0014038:45732-45751 None:intergenic 35.0%
CATCTATTGTTAATCTGAGC+TGG + tig0014038:45732-45751 Msa1353800:intron 35.0%
! ATATGATTGTTCATGGTGGA+TGG + tig0014038:45801-45820 Msa1353800:intron 35.0%
TATCTTCCGTAGTTAGCATA+TGG + tig0014038:45853-45872 Msa1353800:intron 35.0%
ACTTCTCCATATGCTAACTA+CGG - tig0014038:45862-45881 None:intergenic 35.0%
TCTTTAACTAAAGGCTCCAA+CGG + tig0014038:45973-45992 Msa1353800:intron 35.0%
TGTTTGATTGGTATCTGCTT+TGG + tig0014038:46154-46173 Msa1353800:intron 35.0%
GATGAACTAAGGAGAGATTT+AGG + tig0014038:46272-46291 Msa1353800:CDS 35.0%
TCTTCCTGCTGTATTATTGA+TGG + tig0014038:46307-46326 Msa1353800:CDS 35.0%
CTTCCTGCTGTATTATTGAT+GGG + tig0014038:46308-46327 Msa1353800:CDS 35.0%
TTCCTGCTGTATTATTGATG+GGG + tig0014038:46309-46328 Msa1353800:CDS 35.0%
TAGTGTATCAATACCTTCAC+TGG - tig0014038:46485-46504 None:intergenic 35.0%
! ATAGACTGTTGTCTAGTCTT+AGG + tig0014038:46569-46588 Msa1353800:intron 35.0%
! ATACTCTTATTTAGGACGGT+GGG - tig0014038:46719-46738 None:intergenic 35.0%
! AATACTCTTATTTAGGACGG+TGG - tig0014038:46720-46739 None:intergenic 35.0%
AAAAAATGGAGTAGACGAGT+AGG + tig0014038:46745-46764 Msa1353800:intron 35.0%
! GTTTTCTTTCTTATGGGTCA+AGG + tig0014038:46972-46991 Msa1353800:intron 35.0%
AATCCCATGACCTAAAACAT+TGG - tig0014038:47060-47079 None:intergenic 35.0%
! TCCCATGCATTCTTCAATTT+TGG - tig0014038:47088-47107 None:intergenic 35.0%
CATCAACAACTGTCATAATG+AGG - tig0014038:47168-47187 None:intergenic 35.0%
CTCATTATGACAGTTGTTGA+TGG + tig0014038:47166-47185 Msa1353800:intron 35.0%
!!! TTTTTGTTGCTTTTGTAGGC+TGG + tig0014038:47195-47214 Msa1353800:intron 35.0%
AAAAATTCATGACAAGGTCG+AGG - tig0014038:47317-47336 None:intergenic 35.0%
!! AAAGTTAGCTTGCACTATTG+TGG + tig0014038:47347-47366 Msa1353800:CDS 35.0%
AATTTCAGAGTTGCAAGTTG+TGG + tig0014038:47385-47404 Msa1353800:three_prime_UTR 35.0%
ACTATAGCACTGTTATGCAA+CGG - tig0014038:47440-47459 None:intergenic 35.0%
!! GAGTTGAGTTGAGTTGAGTT+GGG - tig0014038:42382-42401 None:intergenic 40.0%
!! TGAGTTGAGTTGAGTTGAGT+TGG - tig0014038:42383-42402 None:intergenic 40.0%
! GGTTGAAGAGGTTAAGGTTT+TGG - tig0014038:42519-42538 None:intergenic 40.0%
! CCCAATGCGGTTTTTGAATT+AGG + tig0014038:42645-42664 Msa1353800:CDS 40.0%
!! GTGAACATGCTTCTGAAGTT+AGG - tig0014038:42716-42735 None:intergenic 40.0%
GTGTGAGGTTGTTGAAGTAA+AGG - tig0014038:42761-42780 None:intergenic 40.0%
CTCAGTTTAAACAATAGCGG+TGG + tig0014038:42813-42832 Msa1353800:CDS 40.0%
AGTTTAAACAATAGCGGTGG+TGG + tig0014038:42816-42835 Msa1353800:CDS 40.0%
TGATGTGGAAGATGAAGGAT+TGG + tig0014038:42995-43014 Msa1353800:CDS 40.0%
GATGTGGAAGATGAAGGATT+GGG + tig0014038:42996-43015 Msa1353800:CDS 40.0%
!! TGATCAGAAGTGTCTGTGTT+AGG + tig0014038:43348-43367 Msa1353800:intron 40.0%
!! GGTGCTTTTGTTTAAGAGCA+AGG + tig0014038:43391-43410 Msa1353800:intron 40.0%
! TCGATTCTGGTTAAAAGTGG+GGG + tig0014038:43611-43630 Msa1353800:intron 40.0%
GTCATGGAATGTTACTGTGA+AGG + tig0014038:43739-43758 Msa1353800:intron 40.0%
!! CTTTGGAGTTAATGCTATGC+AGG + tig0014038:43825-43844 Msa1353800:intron 40.0%
TGTGTGCTCAGACCATAAAT+CGG - tig0014038:43860-43879 None:intergenic 40.0%
TTGACTGATGAACTAGACGT+GGG - tig0014038:43969-43988 None:intergenic 40.0%
TTTGACTGATGAACTAGACG+TGG - tig0014038:43970-43989 None:intergenic 40.0%
!! TTCATAGCTCGGTGAGATTT+TGG + tig0014038:44009-44028 Msa1353800:intron 40.0%
GTGACTCATACATGAAAGTC+AGG + tig0014038:44138-44157 Msa1353800:intron 40.0%
! ATGAAAGTCAGGGCATTAAC+TGG + tig0014038:44149-44168 Msa1353800:intron 40.0%
AAAATGACTGCACGGTAACT+TGG + tig0014038:44399-44418 Msa1353800:intron 40.0%
! CACGGTTCGGATTTGATATT+TGG + tig0014038:44433-44452 Msa1353800:intron 40.0%
TGCAACTGCAGGTAATAAGA+GGG - tig0014038:44501-44520 None:intergenic 40.0%
TTGCAACTGCAGGTAATAAG+AGG - tig0014038:44502-44521 None:intergenic 40.0%
CTTCCACATTGGATGAGATT+AGG + tig0014038:44526-44545 Msa1353800:intron 40.0%
CCCGCAAACATCTTTATATG+TGG + tig0014038:44549-44568 Msa1353800:intron 40.0%
ATCTTAGAACTTGAGGCAAG+AGG - tig0014038:44581-44600 None:intergenic 40.0%
AGAGCCTATTCAAGGTCTAT+TGG + tig0014038:44607-44626 Msa1353800:intron 40.0%
GAGCCTATTCAAGGTCTATT+GGG + tig0014038:44608-44627 Msa1353800:intron 40.0%
! CACGCTCTAGATTTGACAAA+TGG - tig0014038:44671-44690 None:intergenic 40.0%
! TTGTCAAATCTAGAGCGTGA+AGG + tig0014038:44672-44691 Msa1353800:intron 40.0%
! TGTCAAATCTAGAGCGTGAA+GGG + tig0014038:44673-44692 Msa1353800:intron 40.0%
!! CGGTTTTGTAAGGTTGAGTT+AGG + tig0014038:44777-44796 Msa1353800:intron 40.0%
!!! TCTTCGCATTTTGAGGTCAA+GGG + tig0014038:45071-45090 Msa1353800:CDS 40.0%
! CTTTTGGCAACATCTGTAGT+TGG - tig0014038:45280-45299 None:intergenic 40.0%
CAACTACAGATGTTGCCAAA+AGG + tig0014038:45278-45297 Msa1353800:CDS 40.0%
TAAAGGAAGGTCTAACAGGT+AGG - tig0014038:45348-45367 None:intergenic 40.0%
! CGAACAGGCTTTATAAAGGA+AGG - tig0014038:45361-45380 None:intergenic 40.0%
TCAAGAACATGGCATACCTT+TGG - tig0014038:45385-45404 None:intergenic 40.0%
TAAGGGTAGGCATGTATTGT+CGG + tig0014038:45624-45643 Msa1353800:intron 40.0%
! TGTATTGTCGGCTACAATCT+TGG + tig0014038:45636-45655 Msa1353800:intron 40.0%
! GAGAGATCAGACTTGATAAC+TGG + tig0014038:45766-45785 Msa1353800:intron 40.0%
GCAGATACCAATCAAACACA+TGG - tig0014038:46152-46171 None:intergenic 40.0%
GATTGTCGAGCTTCTCTAAT+AGG + tig0014038:46250-46269 Msa1353800:intron 40.0%
ACTAAGGAGAGATTTAGGGA+TGG + tig0014038:46277-46296 Msa1353800:CDS 40.0%
TCCTGCTGTATTATTGATGG+GGG + tig0014038:46310-46329 Msa1353800:CDS 40.0%
ATCACAAGAATCTGACCTGT+GGG - tig0014038:46407-46426 None:intergenic 40.0%
TGATTGGAAGATTCCAGTGA+AGG + tig0014038:46469-46488 Msa1353800:CDS 40.0%
TGATACACTAATTGTTCCGG+CGG + tig0014038:46495-46514 Msa1353800:intron 40.0%
TCAAGTAAAATCACAACCGC+CGG - tig0014038:46514-46533 None:intergenic 40.0%
CTCACACTAGAAACTTTGCT+AGG - tig0014038:46856-46875 None:intergenic 40.0%
! TCTTTTGTAACACGCGTAGC+TGG - tig0014038:42624-42643 None:intergenic 45.0%
! GCGGTGGTGGTTATAAGTTT+AGG + tig0014038:42829-42848 Msa1353800:CDS 45.0%
CTGTTAGGGTTCATTGTGAG+AGG + tig0014038:42877-42896 Msa1353800:CDS 45.0%
CATTGTGAGAGGATTCCGAT+TGG + tig0014038:42888-42907 Msa1353800:CDS 45.0%
!! GGAATGGTGTTGGTGGAAAT+GGG + tig0014038:42964-42983 Msa1353800:CDS 45.0%
! GTGTTGGTGGAAATGGGAAT+CGG + tig0014038:42970-42989 Msa1353800:CDS 45.0%
! TGTTGGTGGAAATGGGAATC+GGG + tig0014038:42971-42990 Msa1353800:CDS 45.0%
!! AAATGGGAATCGGGTTGATG+TGG + tig0014038:42980-42999 Msa1353800:CDS 45.0%
GAAGGATTGGGATTGAAGAG+TGG + tig0014038:43008-43027 Msa1353800:CDS 45.0%
ATTGGGATTGAAGAGTGGTG+AGG + tig0014038:43013-43032 Msa1353800:CDS 45.0%
TTGGGATTGAAGAGTGGTGA+GGG + tig0014038:43014-43033 Msa1353800:CDS 45.0%
TGAGGGGAAGAAAGTGAAGA+AGG + tig0014038:43031-43050 Msa1353800:CDS 45.0%
TTGATGAGTGATACTGGTGG+TGG + tig0014038:43062-43081 Msa1353800:CDS 45.0%
AGTGTGTGGTGTCTATGTCA+GGG - tig0014038:43300-43319 None:intergenic 45.0%
GTTAAAAGTGGGGGCTAACT+TGG + tig0014038:43620-43639 Msa1353800:intron 45.0%
GGAATTTGATTGAACGGCCA+AGG - tig0014038:43883-43902 None:intergenic 45.0%
TAGTAGGTCATCCTCCACAA+CGG - tig0014038:43937-43956 None:intergenic 45.0%
TTGTGGAGGATGACCTACTA+TGG + tig0014038:43937-43956 Msa1353800:CDS 45.0%
GAGGATGACCTACTATGGAA+CGG + tig0014038:43942-43961 Msa1353800:CDS 45.0%
TGACTGATGAACTAGACGTG+GGG - tig0014038:43968-43987 None:intergenic 45.0%
GAACTGGATTTCTCTAGTGG+TGG + tig0014038:44261-44280 Msa1353800:intron 45.0%
GGCAATATTTCAGCACGGTT+CGG + tig0014038:44420-44439 Msa1353800:intron 45.0%
GTTGCAATGTGCTTCCACAT+TGG + tig0014038:44515-44534 Msa1353800:intron 45.0%
TGGCCCAATAGACCTTGAAT+AGG - tig0014038:44614-44633 None:intergenic 45.0%
CTATCATGTCTCCCACTACT+GGG + tig0014038:44638-44657 Msa1353800:intron 45.0%
GTTTGTCAAGAGTCCCACAT+TGG + tig0014038:44697-44716 Msa1353800:intron 45.0%
! ACGTTCCTCTTCGCATTTTG+AGG + tig0014038:45064-45083 Msa1353800:CDS 45.0%
CTTGACCTCAAAATGCGAAG+AGG - tig0014038:45072-45091 None:intergenic 45.0%
!!! CTCTTCGCATTTTGAGGTCA+AGG + tig0014038:45070-45089 Msa1353800:CDS 45.0%
!!! CTTCGCATTTTGAGGTCAAG+GGG + tig0014038:45072-45091 Msa1353800:CDS 45.0%
TGTTGCCAAAAGGGCAATGA+AGG + tig0014038:45288-45307 Msa1353800:CDS 45.0%
! TGGCCGAACAGGCTTTATAA+AGG - tig0014038:45365-45384 None:intergenic 45.0%
TATAAAGCCTGTTCGGCCAA+AGG + tig0014038:45366-45385 Msa1353800:CDS 45.0%
ATCAAGTCTGATCTCTCCCT+AGG - tig0014038:45763-45782 None:intergenic 45.0%
TGGTATCTGCTTTGGCTGAT+TGG + tig0014038:46162-46181 Msa1353800:intron 45.0%
GAGAGATTTAGGGATGGATG+AGG + tig0014038:46283-46302 Msa1353800:CDS 45.0%
CCTGCTGTATTATTGATGGG+GGG + tig0014038:46311-46330 Msa1353800:CDS 45.0%
GATCACAAGAATCTGACCTG+TGG - tig0014038:46408-46427 None:intergenic 45.0%
GGTCAGATTCTTGTGATCTG+TGG + tig0014038:46410-46429 Msa1353800:CDS 45.0%
GGTCAAGGTAGAAGATGTCT+GGG + tig0014038:46987-47006 Msa1353800:intron 45.0%
GTCAAGGTAGAAGATGTCTG+GGG + tig0014038:46988-47007 Msa1353800:intron 45.0%
AAGGTTGGATCTCATTGTCG+CGG + tig0014038:47129-47148 Msa1353800:intron 45.0%
AAATGATTACATTGCCGGGC+AGG + tig0014038:47266-47285 Msa1353800:CDS 45.0%
TTCATGACAAGGTCGAGGAA+TGG - tig0014038:47312-47331 None:intergenic 45.0%
CTTCAACAACCTCACACGTG+TGG + tig0014038:42764-42783 Msa1353800:CDS 50.0%
! ATGATGATGCCACACGTGTG+AGG - tig0014038:42776-42795 None:intergenic 50.0%
!! GGGAATGGTGTTGGTGGAAA+TGG + tig0014038:42963-42982 Msa1353800:CDS 50.0%
!! CGGGTTGATGTGGAAGATGA+AGG + tig0014038:42990-43009 Msa1353800:CDS 50.0%
TGGGATTGAAGAGTGGTGAG+GGG + tig0014038:43015-43034 Msa1353800:CDS 50.0%
CAGTGTGTGGTGTCTATGTC+AGG - tig0014038:43301-43320 None:intergenic 50.0%
TATGGTCTGAGCACACACCT+TGG + tig0014038:43863-43882 Msa1353800:CDS 50.0%
TGGTGAAACATGGACCGTTG+TGG + tig0014038:43920-43939 Msa1353800:CDS 50.0%
TGAAACATGGACCGTTGTGG+AGG + tig0014038:43923-43942 Msa1353800:CDS 50.0%
! TGGAAGCACATTGCAACTGC+AGG - tig0014038:44512-44531 None:intergenic 50.0%
GGGCCTAATCTCATCCAATG+TGG - tig0014038:44532-44551 None:intergenic 50.0%
! GTAGTGGGAGACATGATAGC+TGG - tig0014038:44637-44656 None:intergenic 50.0%
GCTATCATGTCTCCCACTAC+TGG + tig0014038:44637-44656 Msa1353800:intron 50.0%
!! AAAACCGGCTTGCAAGGTGA+GGG - tig0014038:44764-44783 None:intergenic 50.0%
!! CCTTACAAAACCGGCTTGCA+AGG - tig0014038:44770-44789 None:intergenic 50.0%
!! CCTTGCAAGCCGGTTTTGTA+AGG + tig0014038:44767-44786 Msa1353800:intron 50.0%
AGAGGAACGTGTTGCATCAG+TGG - tig0014038:45054-45073 None:intergenic 50.0%
TGAGCACATGCCATCCAACA+TGG + tig0014038:45136-45155 Msa1353800:CDS 50.0%
! TCCAGCCTTCATTGCCCTTT+TGG - tig0014038:45296-45315 None:intergenic 50.0%
AGTCTGATCTCTCCCTAGGT+GGG - tig0014038:45759-45778 None:intergenic 50.0%
AAGTCTGATCTCTCCCTAGG+TGG - tig0014038:45760-45779 None:intergenic 50.0%
CCCCCCATCAATAATACAGC+AGG - tig0014038:46314-46333 None:intergenic 50.0%
GCTGTATTATTGATGGGGGG+AGG + tig0014038:46314-46333 Msa1353800:CDS 50.0%
TTATTGATGGGGGGAGGTGA+AGG + tig0014038:46320-46339 Msa1353800:CDS 50.0%
GTCCCATTGAAGCTACTGCT+CGG + tig0014038:46348-46367 Msa1353800:CDS 50.0%
TCCCATTGAAGCTACTGCTC+GGG + tig0014038:46349-46368 Msa1353800:CDS 50.0%
GGGTCAAGGTAGAAGATGTC+TGG + tig0014038:46986-47005 Msa1353800:intron 50.0%
ATTGCAGAGGCCATGATTCG+AGG + tig0014038:47228-47247 Msa1353800:CDS 50.0%
AATAGGCAGGCCTCGAATCA+TGG - tig0014038:47241-47260 None:intergenic 50.0%
TGAGAACCACATTACCTGCC+CGG - tig0014038:47283-47302 None:intergenic 50.0%
TCCGATTGGATTCGCTTCGC+TGG + tig0014038:42902-42921 Msa1353800:CDS 55.0%
CCCAGCGAAGCGAATCCAAT+CGG - tig0014038:42906-42925 None:intergenic 55.0%
CCGATTGGATTCGCTTCGCT+GGG + tig0014038:42903-42922 Msa1353800:CDS 55.0%
!! GCTTCGCTGGGAGTTGATGA+CGG + tig0014038:42915-42934 Msa1353800:CDS 55.0%
AGACACCACACACTGACACG+TGG + tig0014038:43306-43325 Msa1353800:intron 55.0%
GTGGGAGACATGATAGCTGG+TGG - tig0014038:44634-44653 None:intergenic 55.0%
ATGGAGCATGGCCCAGTAGT+GGG - tig0014038:44652-44671 None:intergenic 55.0%
AATGGAGCATGGCCCAGTAG+TGG - tig0014038:44653-44672 None:intergenic 55.0%
!! CAAAACCGGCTTGCAAGGTG+AGG - tig0014038:44765-44784 None:intergenic 55.0%
GCCAAAAGGGCAATGAAGGC+TGG + tig0014038:45292-45311 Msa1353800:CDS 55.0%
TGGCATACCTTTGGCCGAAC+AGG - tig0014038:45376-45395 None:intergenic 55.0%
AATCTGAGCTGGTCCCACCT+AGG + tig0014038:45743-45762 Msa1353800:intron 55.0%
ATCTGAGCTGGTCCCACCTA+GGG + tig0014038:45744-45763 Msa1353800:intron 55.0%
GCCCGAGCAGTAGCTTCAAT+GGG - tig0014038:46353-46372 None:intergenic 55.0%
TGCCCGAGCAGTAGCTTCAA+TGG - tig0014038:46354-46373 None:intergenic 55.0%
!! TTGCTTTTGTAGGCTGGCCC+AGG + tig0014038:47201-47220 Msa1353800:intron 55.0%
!! TGCTTTTGTAGGCTGGCCCA+GGG + tig0014038:47202-47221 Msa1353800:intron 55.0%
TGGCCTCTGCAATTGTCCCT+GGG - tig0014038:47221-47240 None:intergenic 55.0%
ATGGCCTCTGCAATTGTCCC+TGG - tig0014038:47222-47241 None:intergenic 55.0%
ACATTGCCGGGCAGGTAATG+TGG + tig0014038:47274-47293 Msa1353800:CDS 55.0%
!! TCGCTGGGAGTTGATGACGG+TGG + tig0014038:42918-42937 Msa1353800:CDS 60.0%
!! CTGGGAGTTGATGACGGTGG+TGG + tig0014038:42921-42940 Msa1353800:CDS 60.0%
!! GGAGTTGATGACGGTGGTGG+TGG + tig0014038:42924-42943 Msa1353800:CDS 60.0%
!! GTTGATGACGGTGGTGGTGG+TGG + tig0014038:42927-42946 Msa1353800:CDS 60.0%
!! TGGTGGTGGTGTTGGTGGTG+AGG + tig0014038:42941-42960 Msa1353800:CDS 60.0%
!! GGTGGTGGTGTTGGTGGTGA+GGG + tig0014038:42942-42961 Msa1353800:CDS 60.0%
!! GTGGTGGTGTTGGTGGTGAG+GGG + tig0014038:42943-42962 Msa1353800:CDS 60.0%
!! GGTGTTGGTGGTGAGGGGAA+TGG + tig0014038:42948-42967 Msa1353800:CDS 60.0%
GGTGGTGAGGGGAATGGTGT+TGG + tig0014038:42954-42973 Msa1353800:CDS 60.0%
! GGTGAGGGGAATGGTGTTGG+TGG + tig0014038:42957-42976 Msa1353800:CDS 60.0%
GTCTGCCACGTGTCAGTGTG+TGG - tig0014038:43314-43333 None:intergenic 60.0%
CACTGACACGTGGCAGACAC+TGG + tig0014038:43316-43335 Msa1353800:intron 60.0%
ACGTGGGGCCGTTCCATAGT+AGG - tig0014038:43953-43972 None:intergenic 60.0%
! ATGGGGGGAGGTGAAGGCAT+GGG + tig0014038:46326-46345 Msa1353800:CDS 60.0%
GAAGCTACTGCTCGGGCACT+TGG + tig0014038:46356-46375 Msa1353800:CDS 60.0%
AATGACGAGGGGGTTCCCAC+AGG + tig0014038:46389-46408 Msa1353800:CDS 60.0%
TGGCCCAGGGACAATTGCAG+AGG + tig0014038:47215-47234 Msa1353800:CDS 60.0%
!! GACGGTGGTGGTGGTGGTGT+TGG + tig0014038:42933-42952 Msa1353800:CDS 65.0%
!! GGTGGTGGTGGTGGTGTTGG+TGG + tig0014038:42936-42955 Msa1353800:CDS 65.0%
GCGTCCCTCACCTTGCAAGC+CGG + tig0014038:44757-44776 Msa1353800:intron 65.0%
GATGGGGGGAGGTGAAGGCA+TGG + tig0014038:46325-46344 Msa1353800:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0014038 gene 42352 47531 42352 ID=Msa1353800;Name=Msa1353800
tig0014038 mRNA 42352 47531 42352 ID=Msa1353800-mRNA-1;Parent=Msa1353800;Name=Msa1353800-mRNA-1;_AED=0.04;_eAED=0.04;_QI=260|1|1|1|1|1|7|154|486
tig0014038 exon 42352 43148 42352 ID=Msa1353800-mRNA-1:exon:8804;Parent=Msa1353800-mRNA-1
tig0014038 exon 43847 44019 43847 ID=Msa1353800-mRNA-1:exon:8805;Parent=Msa1353800-mRNA-1
tig0014038 exon 44996 45157 44996 ID=Msa1353800-mRNA-1:exon:8806;Parent=Msa1353800-mRNA-1
tig0014038 exon 45246 45387 45246 ID=Msa1353800-mRNA-1:exon:8807;Parent=Msa1353800-mRNA-1
tig0014038 exon 46272 46490 46272 ID=Msa1353800-mRNA-1:exon:8808;Parent=Msa1353800-mRNA-1
tig0014038 exon 47069 47131 47069 ID=Msa1353800-mRNA-1:exon:8809;Parent=Msa1353800-mRNA-1
tig0014038 exon 47213 47531 47213 ID=Msa1353800-mRNA-1:exon:8810;Parent=Msa1353800-mRNA-1
tig0014038 five_prime_UTR 42352 42611 42352 ID=Msa1353800-mRNA-1:five_prime_utr;Parent=Msa1353800-mRNA-1
tig0014038 CDS 42612 43148 42612 ID=Msa1353800-mRNA-1:cds;Parent=Msa1353800-mRNA-1
tig0014038 CDS 43847 44019 43847 ID=Msa1353800-mRNA-1:cds;Parent=Msa1353800-mRNA-1
tig0014038 CDS 44996 45157 44996 ID=Msa1353800-mRNA-1:cds;Parent=Msa1353800-mRNA-1
tig0014038 CDS 45246 45387 45246 ID=Msa1353800-mRNA-1:cds;Parent=Msa1353800-mRNA-1
tig0014038 CDS 46272 46490 46272 ID=Msa1353800-mRNA-1:cds;Parent=Msa1353800-mRNA-1
tig0014038 CDS 47069 47131 47069 ID=Msa1353800-mRNA-1:cds;Parent=Msa1353800-mRNA-1
tig0014038 CDS 47213 47377 47213 ID=Msa1353800-mRNA-1:cds;Parent=Msa1353800-mRNA-1
tig0014038 three_prime_UTR 47378 47531 47378 ID=Msa1353800-mRNA-1:three_prime_utr;Parent=Msa1353800-mRNA-1
Gene Sequence

>Msa1353800

ATGTATAATCCAGCTACGCGTGTTACAAAAGAACCCAATGCGGTTTTTGAATTAGGTTCACGAATTGGTCGATTCACACTCGATACGTCGTCGTTTTTAAACCTAACTTCAGAAGCATGTTCACCAGCTTCACTTCTTTCTAATTACCTTTACTTCAACAACCTCACACGTGTGGCATCATCATCAAAACGCACCGTTTCACTCAGTTTAAACAATAGCGGTGGTGGTTATAAGTTTAGGAATATTCTTCATGATTTTAATAGAGCTGTTAGGGTTCATTGTGAGAGGATTCCGATTGGATTCGCTTCGCTGGGAGTTGATGACGGTGGTGGTGGTGGTGTTGGTGGTGAGGGGAATGGTGTTGGTGGAAATGGGAATCGGGTTGATGTGGAAGATGAAGGATTGGGATTGAAGAGTGGTGAGGGGAAGAAAGTGAAGAAGGTTTTGATTTTGATGAGTGATACTGGTGGTGGTCATCGTGCTTCTGCTGAAGCGATTAAAGCTGCTTTTTATCAAGAATATGGCGATGATTATCAGGTGTTTATTACCGATTTATGGTCTGAGCACACACCTTGGCCGTTCAATCAAATTCCTAAAAGCTATAGTTTTTTGGTGAAACATGGACCGTTGTGGAGGATGACCTACTATGGAACGGCCCCACGTCTAGTTCATCAGTCAAATTTTGCTGCAACTTCAACATTCATAGCTCGTGAGGTTGCTAAAGGATTAATGAAGTATCAGCCTGATATAATAATCAGTGTGCATCCACTGATGCAACACGTTCCTCTTCGCATTTTGAGGTCAAGGGGTCTTTTAGATAAGATTGTTTTTACCACAGTTATTACAGATTTGAGCACATGCCATCCAACATGGTTTCACAAACTTGTAACTAGATGTTATTGTCCAACTACAGATGTTGCCAAAAGGGCAATGAAGGCTGGACTCAAACAAACCCAAATAAAGATTTATGGCCTACCTGTTAGACCTTCCTTTATAAAGCCTGTTCGGCCAAAGGATGAACTAAGGAGAGATTTAGGGATGGATGAGGATCTTCCTGCTGTATTATTGATGGGGGGAGGTGAAGGCATGGGTCCCATTGAAGCTACTGCTCGGGCACTTGGAGATTTATTAAATGACGAGGGGGTTCCCACAGGTCAGATTCTTGTGATCTGTGGTCGTAATAAGAAGCTTGCTAACAAACTCAGTTCTATTGATTGGAAGATTCCAGTGAAGGTCATGGGATTCGTTACCAAAATTGAAGAATGCATGGGAGCCTGTGATTGCATTATTACAAAGGCTGGCCCAGGGACAATTGCAGAGGCCATGATTCGAGGCCTGCCTATTATTTTAAATGATTACATTGCCGGGCAGGTAATGTGGTTCTCATTATTGCCATTCCTCGACCTTGTCATGAATTTTTTTATTTGCAAAAAGTTAGCTTGCACTATTGTGGCTAATTGA

Protein sequence

>Msa1353800

MYNPATRVTKEPNAVFELGSRIGRFTLDTSSFLNLTSEACSPASLLSNYLYFNNLTRVASSSKRTVSLSLNNSGGGYKFRNILHDFNRAVRVHCERIPIGFASLGVDDGGGGGVGGEGNGVGGNGNRVDVEDEGLGLKSGEGKKVKKVLILMSDTGGGHRASAEAIKAAFYQEYGDDYQVFITDLWSEHTPWPFNQIPKSYSFLVKHGPLWRMTYYGTAPRLVHQSNFAATSTFIAREVAKGLMKYQPDIIISVHPLMQHVPLRILRSRGLLDKIVFTTVITDLSTCHPTWFHKLVTRCYCPTTDVAKRAMKAGLKQTQIKIYGLPVRPSFIKPVRPKDELRRDLGMDEDLPAVLLMGGGEGMGPIEATARALGDLLNDEGVPTGQILVICGRNKKLANKLSSIDWKIPVKVMGFVTKIEECMGACDCIITKAGPGTIAEAMIRGLPIILNDYIAGQVMWFSLLPFLDLVMNFFICKKLACTIVAN*