Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1353800 | XP_039684571.1 | 96.304 | 460 | 14 | 1 | 1 | 457 | 1 | 460 | 0.0 | 906 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1353800 | sp|Q9FZL4|MGDG_SOYBN | 76.149 | 457 | 93 | 6 | 8 | 457 | 5 | 452 | 0.0 | 659 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1353800 | A0A396GED1 | 96.304 | 460 | 14 | 1 | 1 | 457 | 1 | 460 | 0.0 | 906 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0005450 | Msa1353800 | 0.932912 | 4.168264e-95 | -8.615850e-47 |
Msa0054170 | Msa1353800 | 0.966732 | 2.575947e-126 | -8.615850e-47 |
Msa0086020 | Msa1353800 | -0.811797 | 5.849373e-51 | -8.615850e-47 |
Msa1353800 | Msa1438450 | 0.806646 | 7.433819e-50 | -8.615850e-47 |
Msa1353800 | Msa1442220 | -0.801275 | 9.724597e-49 | -8.615850e-47 |
Msa0609970 | Msa1353800 | 0.818924 | 1.520274e-52 | -8.615850e-47 |
Msa0824730 | Msa1353800 | 0.813963 | 1.961238e-51 | -8.615850e-47 |
Msa1182640 | Msa1353800 | 0.820386 | 7.050326e-53 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1353800 | MtrunA17_Chr8g0347051 | 96.304 | 460 | 14 | 1 | 1 | 457 | 1 | 460 | 0.0 | 906 |
Msa1353800 | MtrunA17_Chr1g0150361 | 95.228 | 461 | 16 | 2 | 1 | 456 | 1 | 460 | 0.0 | 827 |
Msa1353800 | MtrunA17_Chr4g0064711 | 60.123 | 326 | 128 | 1 | 134 | 457 | 57 | 382 | 1.27e-135 | 399 |
Msa1353800 | MtrunA17_Chr8g0347041 | 98.901 | 91 | 1 | 0 | 132 | 222 | 88 | 178 | 7.42e-60 | 196 |
Msa1353800 | MtrunA17_Chr8g0347341 | 97.802 | 91 | 2 | 0 | 132 | 222 | 88 | 178 | 1.14e-57 | 192 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1353800 | AT4G31780.2 | 67.888 | 464 | 133 | 7 | 1 | 457 | 1 | 455 | 0.0 | 606 |
Msa1353800 | AT4G31780.3 | 64.286 | 490 | 133 | 8 | 1 | 457 | 1 | 481 | 0.0 | 592 |
Msa1353800 | AT4G31780.1 | 84.342 | 281 | 42 | 1 | 179 | 457 | 8 | 288 | 2.17e-173 | 492 |
Msa1353800 | AT2G11810.1 | 59.574 | 329 | 131 | 1 | 131 | 457 | 58 | 386 | 5.60e-138 | 405 |
Msa1353800 | AT5G20410.1 | 58.982 | 334 | 135 | 1 | 126 | 457 | 49 | 382 | 1.49e-136 | 402 |
Msa1353800 | AT2G11810.2 | 57.237 | 304 | 128 | 1 | 131 | 432 | 58 | 361 | 1.44e-122 | 362 |
Msa1353800 | AT2G11810.3 | 56.863 | 306 | 130 | 1 | 131 | 434 | 58 | 363 | 1.75e-122 | 363 |
Msa1353800 | AT2G11810.4 | 61.303 | 261 | 99 | 1 | 199 | 457 | 3 | 263 | 3.54e-108 | 325 |
Find 134 sgRNAs with CRISPR-Local
Find 362 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCCCATGCATTCTTCAATTT+TGG | 0.143640 | tig0014038:-47085 | None:intergenic |
GTAGGCCATAAATCTTTATT+TGG | 0.144917 | tig0014038:-45327 | None:intergenic |
GATGAACTAAGGAGAGATTT+AGG | 0.146974 | tig0014038:+46272 | Msa1353800:CDS |
AGTTAATTATTGTAATAAAA+TGG | 0.199176 | tig0014038:-42579 | None:intergenic |
TCCAGCCTTCATTGCCCTTT+TGG | 0.207960 | tig0014038:-45293 | None:intergenic |
AGGTGTTTATTACCGATTTA+TGG | 0.217636 | tig0014038:+43845 | Msa1353800:intron |
CAAACCCAAATAAAGATTTA+TGG | 0.240574 | tig0014038:+45322 | Msa1353800:CDS |
GGGAATGGTGTTGGTGGAAA+TGG | 0.257208 | tig0014038:+42963 | Msa1353800:CDS |
GGTTGAAGAGGTTAAGGTTT+TGG | 0.268173 | tig0014038:-42516 | None:intergenic |
GTAATAAAATGGAATATAAA+TGG | 0.278091 | tig0014038:-42568 | None:intergenic |
GGTGGTGGTGTTGGTGGTGA+GGG | 0.289092 | tig0014038:+42942 | Msa1353800:CDS |
TGGTGGTGGTGTTGGTGGTG+AGG | 0.295208 | tig0014038:+42941 | Msa1353800:CDS |
TCCGATTGGATTCGCTTCGC+TGG | 0.325021 | tig0014038:+42902 | Msa1353800:CDS |
GTGAACATGCTTCTGAAGTT+AGG | 0.332228 | tig0014038:-42713 | None:intergenic |
ATGAACTAAGGAGAGATTTA+GGG | 0.343617 | tig0014038:+46273 | Msa1353800:CDS |
ATGTAATCATTTAAAATAAT+AGG | 0.345699 | tig0014038:-47255 | None:intergenic |
ACAAACTCAGTTCTATTGAT+TGG | 0.345962 | tig0014038:+46453 | Msa1353800:CDS |
AGAATATGGCGATGATTATC+AGG | 0.361052 | tig0014038:+43127 | Msa1353800:CDS |
ATGGCCTCTGCAATTGTCCC+TGG | 0.362907 | tig0014038:-47219 | None:intergenic |
TAATGAGGTTGAAGAGGTTA+AGG | 0.368271 | tig0014038:-42522 | None:intergenic |
TGCACACTGATTATTATATC+AGG | 0.373255 | tig0014038:-45027 | None:intergenic |
TAGGCCATAAATCTTTATTT+GGG | 0.377476 | tig0014038:-45326 | None:intergenic |
TCTTCCTGCTGTATTATTGA+TGG | 0.378039 | tig0014038:+46307 | Msa1353800:CDS |
TGGCATACCTTTGGCCGAAC+AGG | 0.379500 | tig0014038:-45373 | None:intergenic |
TTTATAAAGGAAGGTCTAAC+AGG | 0.381701 | tig0014038:-45349 | None:intergenic |
GTGGTGGTGTTGGTGGTGAG+GGG | 0.391464 | tig0014038:+42943 | Msa1353800:CDS |
CTTCCTGCTGTATTATTGAT+GGG | 0.393576 | tig0014038:+46308 | Msa1353800:CDS |
GGTGGTGAGGGGAATGGTGT+TGG | 0.397626 | tig0014038:+42954 | Msa1353800:CDS |
GGTGTTGGTGGTGAGGGGAA+TGG | 0.402477 | tig0014038:+42948 | Msa1353800:CDS |
GTTGATGACGGTGGTGGTGG+TGG | 0.406284 | tig0014038:+42927 | Msa1353800:CDS |
TTTGAATTAGGTTCACGAAT+TGG | 0.407713 | tig0014038:+42657 | Msa1353800:CDS |
GCGGTGGTGGTTATAAGTTT+AGG | 0.412585 | tig0014038:+42829 | Msa1353800:CDS |
GGAATGGTGTTGGTGGAAAT+GGG | 0.413937 | tig0014038:+42964 | Msa1353800:CDS |
TGGCCGAACAGGCTTTATAA+AGG | 0.422561 | tig0014038:-45362 | None:intergenic |
TGTTGGTGGAAATGGGAATC+GGG | 0.425641 | tig0014038:+42971 | Msa1353800:CDS |
TTGTGGAGGATGACCTACTA+TGG | 0.432904 | tig0014038:+43937 | Msa1353800:CDS |
GTGTTGGTGGAAATGGGAAT+CGG | 0.433262 | tig0014038:+42970 | Msa1353800:CDS |
GGAGTTGATGACGGTGGTGG+TGG | 0.440641 | tig0014038:+42924 | Msa1353800:CDS |
CCGATTGGATTCGCTTCGCT+GGG | 0.440816 | tig0014038:+42903 | Msa1353800:CDS |
CTTCCTTTATAAAGCCTGTT+CGG | 0.450461 | tig0014038:+45359 | Msa1353800:CDS |
AAATGATTACATTGCCGGGC+AGG | 0.456227 | tig0014038:+47266 | Msa1353800:CDS |
TGATGTGGAAGATGAAGGAT+TGG | 0.459972 | tig0014038:+42995 | Msa1353800:CDS |
TTGGGATTGAAGAGTGGTGA+GGG | 0.460128 | tig0014038:+43014 | Msa1353800:CDS |
GAGTTGAGTTGAGTTGAGTT+GGG | 0.461490 | tig0014038:-42379 | None:intergenic |
GCCAAAAGGGCAATGAAGGC+TGG | 0.464526 | tig0014038:+45292 | Msa1353800:CDS |
CGGGTTGATGTGGAAGATGA+AGG | 0.465885 | tig0014038:+42990 | Msa1353800:CDS |
TGAGTTGAGTTGAGTTGAGT+TGG | 0.466063 | tig0014038:-42380 | None:intergenic |
TGCCCGAGCAGTAGCTTCAA+TGG | 0.468895 | tig0014038:-46351 | None:intergenic |
TAGTGTATCAATACCTTCAC+TGG | 0.470804 | tig0014038:-46482 | None:intergenic |
GGTGAGGGGAATGGTGTTGG+TGG | 0.474033 | tig0014038:+42957 | Msa1353800:CDS |
AATAGGCAGGCCTCGAATCA+TGG | 0.478545 | tig0014038:-47238 | None:intergenic |
GAAGCTACTGCTCGGGCACT+TGG | 0.480129 | tig0014038:+46356 | Msa1353800:CDS |
CAACTACAGATGTTGCCAAA+AGG | 0.481512 | tig0014038:+45278 | Msa1353800:CDS |
CCCAGCGAAGCGAATCCAAT+CGG | 0.484023 | tig0014038:-42903 | None:intergenic |
TGTTGCCAAAAGGGCAATGA+AGG | 0.487028 | tig0014038:+45288 | Msa1353800:CDS |
AACTACAGATGTTGCCAAAA+GGG | 0.488345 | tig0014038:+45279 | Msa1353800:CDS |
TAATTAGAAAGAAGTGAAGC+TGG | 0.489003 | tig0014038:-42735 | None:intergenic |
TACCAAAATTGAAGAATGCA+TGG | 0.490489 | tig0014038:+47083 | Msa1353800:CDS |
TGGCCTCTGCAATTGTCCCT+GGG | 0.498243 | tig0014038:-47218 | None:intergenic |
GAGAGATTTAGGGATGGATG+AGG | 0.498586 | tig0014038:+46283 | Msa1353800:CDS |
TTCATTCATCGGAGAAAATG+AGG | 0.501011 | tig0014038:-42481 | None:intergenic |
TTCCTGCTGTATTATTGATG+GGG | 0.501628 | tig0014038:+46309 | Msa1353800:CDS |
AATTTCAGAGTTGCAAGTTG+TGG | 0.505699 | tig0014038:+47385 | Msa1353800:three_prime_UTR |
TCCCATTGAAGCTACTGCTC+GGG | 0.505735 | tig0014038:+46349 | Msa1353800:CDS |
TTCTCTAATAGGATGAACTA+AGG | 0.511639 | tig0014038:+46261 | Msa1353800:intron |
AGTTTAAACAATAGCGGTGG+TGG | 0.514164 | tig0014038:+42816 | Msa1353800:CDS |
GCCCGAGCAGTAGCTTCAAT+GGG | 0.516727 | tig0014038:-46350 | None:intergenic |
ACGTGGGGCCGTTCCATAGT+AGG | 0.519039 | tig0014038:-43950 | None:intergenic |
TGAGGGGAAGAAAGTGAAGA+AGG | 0.529010 | tig0014038:+43031 | Msa1353800:CDS |
CTGTTAGGGTTCATTGTGAG+AGG | 0.529931 | tig0014038:+42877 | Msa1353800:CDS |
AAATGGGAATCGGGTTGATG+TGG | 0.534846 | tig0014038:+42980 | Msa1353800:CDS |
ATTGTTTAAACTGAGTGAAA+CGG | 0.538925 | tig0014038:-42805 | None:intergenic |
GTGTGAGGTTGTTGAAGTAA+AGG | 0.540601 | tig0014038:-42758 | None:intergenic |
CTGGGAGTTGATGACGGTGG+TGG | 0.541803 | tig0014038:+42921 | Msa1353800:CDS |
TATAAAGCCTGTTCGGCCAA+AGG | 0.541804 | tig0014038:+45366 | Msa1353800:CDS |
GTCCCATTGAAGCTACTGCT+CGG | 0.543348 | tig0014038:+46348 | Msa1353800:CDS |
AGAGGAACGTGTTGCATCAG+TGG | 0.547034 | tig0014038:-45051 | None:intergenic |
TGTTTGTTTGTTTATTGCAG+AGG | 0.547926 | tig0014038:-42441 | None:intergenic |
TCCTGCTGTATTATTGATGG+GGG | 0.548155 | tig0014038:+46310 | Msa1353800:CDS |
CTTTGTAATAATGCAATCAC+AGG | 0.552893 | tig0014038:-47109 | None:intergenic |
TTTGTGTAATGAGGTTGAAG+AGG | 0.554343 | tig0014038:-42528 | None:intergenic |
CTGTGATTGCATTATTACAA+AGG | 0.560129 | tig0014038:+47110 | Msa1353800:CDS |
TGTGTGCTCAGACCATAAAT+CGG | 0.560704 | tig0014038:-43857 | None:intergenic |
GGAATTTGATTGAACGGCCA+AGG | 0.560974 | tig0014038:-43880 | None:intergenic |
CAACTTCAACATTCATAGCT+CGG | 0.561242 | tig0014038:+43998 | Msa1353800:CDS |
GCTTCGCTGGGAGTTGATGA+CGG | 0.562992 | tig0014038:+42915 | Msa1353800:CDS |
ATTGCAGAGGCCATGATTCG+AGG | 0.563068 | tig0014038:+47228 | Msa1353800:CDS |
AATCATTTAAAATAATAGGC+AGG | 0.569875 | tig0014038:-47251 | None:intergenic |
CATTGTGAGAGGATTCCGAT+TGG | 0.571847 | tig0014038:+42888 | Msa1353800:CDS |
GGAGATTTATTAAATGACGA+GGG | 0.574821 | tig0014038:+46377 | Msa1353800:CDS |
AGTGAAATGTGTTCATTCAT+CGG | 0.575172 | tig0014038:-42492 | None:intergenic |
CGAACAGGCTTTATAAAGGA+AGG | 0.575344 | tig0014038:-45358 | None:intergenic |
AAAGTTAGCTTGCACTATTG+TGG | 0.577538 | tig0014038:+47347 | Msa1353800:CDS |
CAGAACTAAACTAACCATGT+TGG | 0.579591 | tig0014038:-45150 | None:intergenic |
TGAGAACCACATTACCTGCC+CGG | 0.584401 | tig0014038:-47280 | None:intergenic |
ATCACAAGAATCTGACCTGT+GGG | 0.585615 | tig0014038:-46404 | None:intergenic |
TGATTGGAAGATTCCAGTGA+AGG | 0.586288 | tig0014038:+46469 | Msa1353800:CDS |
TTCATGACAAGGTCGAGGAA+TGG | 0.587699 | tig0014038:-47309 | None:intergenic |
ACTAAACTAACCATGTTGGA+TGG | 0.594783 | tig0014038:-45146 | None:intergenic |
ACATTGCCGGGCAGGTAATG+TGG | 0.595199 | tig0014038:+47274 | Msa1353800:CDS |
TTGATGAGTGATACTGGTGG+TGG | 0.596075 | tig0014038:+43062 | Msa1353800:CDS |
TGGGATTGAAGAGTGGTGAG+GGG | 0.596691 | tig0014038:+43015 | Msa1353800:CDS |
CCTGCTGTATTATTGATGGG+GGG | 0.598824 | tig0014038:+46311 | Msa1353800:CDS |
ACCAAAATTGAAGAATGCAT+GGG | 0.604354 | tig0014038:+47084 | Msa1353800:CDS |
GATGTGGAAGATGAAGGATT+GGG | 0.606638 | tig0014038:+42996 | Msa1353800:CDS |
TGAGCACATGCCATCCAACA+TGG | 0.607260 | tig0014038:+45136 | Msa1353800:CDS |
TAAAGGAAGGTCTAACAGGT+AGG | 0.611675 | tig0014038:-45345 | None:intergenic |
GGTCAGATTCTTGTGATCTG+TGG | 0.618567 | tig0014038:+46410 | Msa1353800:CDS |
TGGCCCAGGGACAATTGCAG+AGG | 0.622682 | tig0014038:+47215 | Msa1353800:CDS |
TCACTCAGTTTAAACAATAG+CGG | 0.624973 | tig0014038:+42810 | Msa1353800:CDS |
CTTCAACAACCTCACACGTG+TGG | 0.626249 | tig0014038:+42764 | Msa1353800:CDS |
CTCAGTTTAAACAATAGCGG+TGG | 0.637662 | tig0014038:+42813 | Msa1353800:CDS |
ACTAAGGAGAGATTTAGGGA+TGG | 0.645174 | tig0014038:+46277 | Msa1353800:CDS |
TGGAGATTTATTAAATGACG+AGG | 0.645340 | tig0014038:+46376 | Msa1353800:CDS |
TGGTGAAACATGGACCGTTG+TGG | 0.648644 | tig0014038:+43920 | Msa1353800:CDS |
TATGGTCTGAGCACACACCT+TGG | 0.651270 | tig0014038:+43863 | Msa1353800:CDS |
CTTGACCTCAAAATGCGAAG+AGG | 0.652018 | tig0014038:-45069 | None:intergenic |
GAGATTTATTAAATGACGAG+GGG | 0.652249 | tig0014038:+46378 | Msa1353800:CDS |
TTGACTGATGAACTAGACGT+GGG | 0.657276 | tig0014038:-43966 | None:intergenic |
ACTATAGCACTGTTATGCAA+CGG | 0.658285 | tig0014038:-47437 | None:intergenic |
TTTGACTGATGAACTAGACG+TGG | 0.659531 | tig0014038:-43967 | None:intergenic |
GATCACAAGAATCTGACCTG+TGG | 0.659557 | tig0014038:-46405 | None:intergenic |
GAGGATGACCTACTATGGAA+CGG | 0.659969 | tig0014038:+43942 | Msa1353800:CDS |
AGATTTATTAAATGACGAGG+GGG | 0.661667 | tig0014038:+46379 | Msa1353800:CDS |
ATTGGGATTGAAGAGTGGTG+AGG | 0.665244 | tig0014038:+43013 | Msa1353800:CDS |
TTGTGAAATAGTGTCTATAG+CGG | 0.667806 | tig0014038:-47461 | None:intergenic |
ATGATGATGCCACACGTGTG+AGG | 0.673938 | tig0014038:-42773 | None:intergenic |
GAAGGATTGGGATTGAAGAG+TGG | 0.674436 | tig0014038:+43008 | Msa1353800:CDS |
GCTCAAATCTGTAATAACTG+TGG | 0.689167 | tig0014038:-45118 | None:intergenic |
TGAAACATGGACCGTTGTGG+AGG | 0.709765 | tig0014038:+43923 | Msa1353800:CDS |
TAGTAGGTCATCCTCCACAA+CGG | 0.715366 | tig0014038:-43934 | None:intergenic |
TGACTGATGAACTAGACGTG+GGG | 0.741650 | tig0014038:-43965 | None:intergenic |
TCGCTGGGAGTTGATGACGG+TGG | 0.773048 | tig0014038:+42918 | Msa1353800:CDS |
TGTTACAAAAGAACCCAATG+CGG | 0.774333 | tig0014038:+42632 | Msa1353800:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AGTTAATTATTGTAATAAAA+TGG | - | tig0014038:42582-42601 | None:intergenic | 10.0% |
!! | AATTGTTTGATATTTATTAT+GGG | + | tig0014038:45943-45962 | Msa1353800:intron | 10.0% |
!! | TAAATAAATAAATGTTGATA+TGG | + | tig0014038:47011-47030 | Msa1353800:intron | 10.0% |
!!! | ATGTAATCATTTAAAATAAT+AGG | - | tig0014038:47258-47277 | None:intergenic | 10.0% |
!! | GTAATAAAATGGAATATAAA+TGG | - | tig0014038:42571-42590 | None:intergenic | 15.0% |
!!! | ATTTTTAGGTAAAAAAGTTA+GGG | + | tig0014038:43416-43435 | Msa1353800:intron | 15.0% |
!!! | TCTTATTTCTTGTATTTTTT+AGG | + | tig0014038:45224-45243 | Msa1353800:intron | 15.0% |
!! | AACCTCAAATAATAAATAAA+CGG | - | tig0014038:45673-45692 | None:intergenic | 15.0% |
!! | AAGATATTAAGTGTAAAATA+GGG | - | tig0014038:45839-45858 | None:intergenic | 15.0% |
!!! | CTCAAAATTCAAATTTTTAA+TGG | + | tig0014038:45905-45924 | Msa1353800:intron | 15.0% |
!! | CAATTGTTTGATATTTATTA+TGG | + | tig0014038:45942-45961 | Msa1353800:intron | 15.0% |
!!! | TTCACATTTTTAATTATTCT+GGG | - | tig0014038:46773-46792 | None:intergenic | 15.0% |
!!! | TTTCACATTTTTAATTATTC+TGG | - | tig0014038:46774-46793 | None:intergenic | 15.0% |
!! | TTGGTAAAAACAATAATTTA+GGG | - | tig0014038:47041-47060 | None:intergenic | 15.0% |
!! | ATTGGTAAAAACAATAATTT+AGG | - | tig0014038:47042-47061 | None:intergenic | 15.0% |
!! | AAATAAAAAAATTCATGACA+AGG | - | tig0014038:47323-47342 | None:intergenic | 15.0% |
!!! | TTTGTTAATTTTGTGTAATG+AGG | - | tig0014038:42540-42559 | None:intergenic | 20.0% |
!!! | GATTTTTAGGTAAAAAAGTT+AGG | + | tig0014038:43415-43434 | Msa1353800:intron | 20.0% |
!!! | GTTGTTTTTGTAAGTTATTT+TGG | + | tig0014038:43513-43532 | Msa1353800:intron | 20.0% |
!! | TAGTAGAATGAGATTAAAAT+AGG | + | tig0014038:43542-43561 | Msa1353800:intron | 20.0% |
!! | TTTGACGATTAATTTATGTA+CGG | + | tig0014038:43666-43685 | Msa1353800:intron | 20.0% |
!! | TAACTAACAACTTAAAAACA+GGG | - | tig0014038:44183-44202 | None:intergenic | 20.0% |
!! | TTGAAAATAACTTTATACGT+AGG | + | tig0014038:44732-44751 | Msa1353800:intron | 20.0% |
!! | TGTATAAAACAATTCAGAAA+AGG | - | tig0014038:45465-45484 | None:intergenic | 20.0% |
!!! | AATTGTTTTATACAATGAGA+TGG | + | tig0014038:45471-45490 | Msa1353800:intron | 20.0% |
!!! | ATTGTTTTATACAATGAGAT+GGG | + | tig0014038:45472-45491 | Msa1353800:intron | 20.0% |
!! | TTGTTAAATATGATTGTTCA+TGG | + | tig0014038:45794-45813 | Msa1353800:intron | 20.0% |
!! | GAAGATATTAAGTGTAAAAT+AGG | - | tig0014038:45840-45859 | None:intergenic | 20.0% |
!! | TATTTCATGTTTATGCAATT+TGG | + | tig0014038:46201-46220 | Msa1353800:intron | 20.0% |
!!! | TTACTTCAATACTCTTATTT+AGG | - | tig0014038:46727-46746 | None:intergenic | 20.0% |
!!! | AAGAGTATTGAAGTAAAAAA+TGG | + | tig0014038:46731-46750 | Msa1353800:intron | 20.0% |
!! | TGGTAAAAACAATAATTTAG+GGG | - | tig0014038:47040-47059 | None:intergenic | 20.0% |
!!! | ATTGTTTTTACCAATGTTTT+AGG | + | tig0014038:47047-47066 | Msa1353800:intron | 20.0% |
!!! | AATCATTTAAAATAATAGGC+AGG | - | tig0014038:47254-47273 | None:intergenic | 20.0% |
!!! | ATTTTAAATGATTACATTGC+CGG | + | tig0014038:47261-47280 | Msa1353800:CDS | 20.0% |
! | ATTGTTTAAACTGAGTGAAA+CGG | - | tig0014038:42808-42827 | None:intergenic | 25.0% |
!!! | ATGATTTTAATAGAGCTGTT+AGG | + | tig0014038:42862-42881 | Msa1353800:CDS | 25.0% |
!!! | TGATTTTAATAGAGCTGTTA+GGG | + | tig0014038:42863-42882 | Msa1353800:CDS | 25.0% |
! | AAGAAAATGACAGAATTGAA+TGG | + | tig0014038:43220-43239 | Msa1353800:intron | 25.0% |
! | GTAATTAGAGGAATGAAATA+TGG | + | tig0014038:43370-43389 | Msa1353800:intron | 25.0% |
!!! | ATTTTGTTTGTTGAGTAATG+TGG | + | tig0014038:43464-43483 | Msa1353800:intron | 25.0% |
!! | TGATTATGTAAAATCGATTC+TGG | + | tig0014038:43598-43617 | Msa1353800:intron | 25.0% |
!! | ATGAATAATTTGCAAGTGAA+TGG | + | tig0014038:43699-43718 | Msa1353800:intron | 25.0% |
!!! | AATGGTAATTTTAGGATTGA+GGG | + | tig0014038:43717-43736 | Msa1353800:intron | 25.0% |
!!! | CTTTTAGGAATTTGATTGAA+CGG | - | tig0014038:43889-43908 | None:intergenic | 25.0% |
!!! | TCCTAAAAGCTATAGTTTTT+TGG | + | tig0014038:43900-43919 | Msa1353800:CDS | 25.0% |
!! | ACCAAAAAACTATAGCTTTT+AGG | - | tig0014038:43904-43923 | None:intergenic | 25.0% |
!!! | TATAGTTTTTTGGTGAAACA+TGG | + | tig0014038:43910-43929 | Msa1353800:CDS | 25.0% |
! | AACTTATCAGTTATCCATTA+CGG | - | tig0014038:44108-44127 | None:intergenic | 25.0% |
! | GTAACTAACAACTTAAAAAC+AGG | - | tig0014038:44184-44203 | None:intergenic | 25.0% |
!!! | TTTAAGTTGTTAGTTACCAT+AGG | + | tig0014038:44187-44206 | Msa1353800:intron | 25.0% |
! | ATATTGTTTGAATGATCCTA+TGG | - | tig0014038:44206-44225 | None:intergenic | 25.0% |
!! | ATGTGCAATATACAGATTTT+CGG | + | tig0014038:44332-44351 | Msa1353800:intron | 25.0% |
! | TTACAATAAAAATGACTGCA+CGG | + | tig0014038:44391-44410 | Msa1353800:intron | 25.0% |
!! | AGATATTTTTCATCCAATGT+GGG | - | tig0014038:44713-44732 | None:intergenic | 25.0% |
!! | AAGATATTTTTCATCCAATG+TGG | - | tig0014038:44714-44733 | None:intergenic | 25.0% |
! | AATAACATTCTCTTAGAATC+TGG | - | tig0014038:44809-44828 | None:intergenic | 25.0% |
!!! | TCTTGTATATTTTTACAGTG+AGG | + | tig0014038:44978-44997 | Msa1353800:intron | 25.0% |
!! | TCAGACAATAGGTAATATTT+TGG | - | tig0014038:45196-45215 | None:intergenic | 25.0% |
! | CAAACCCAAATAAAGATTTA+TGG | + | tig0014038:45322-45341 | Msa1353800:CDS | 25.0% |
!! | TAGGCCATAAATCTTTATTT+GGG | - | tig0014038:45329-45348 | None:intergenic | 25.0% |
!! | GTTTAGTAATTCAACTTGTT+AGG | + | tig0014038:45525-45544 | Msa1353800:intron | 25.0% |
! | ATAAATAAACGGCAAAATCA+TGG | - | tig0014038:45662-45681 | None:intergenic | 25.0% |
!! | TGCCGTTTATTTATTATTTG+AGG | + | tig0014038:45668-45687 | Msa1353800:intron | 25.0% |
! | TTAAATATGATTGTTCATGG+TGG | + | tig0014038:45797-45816 | Msa1353800:intron | 25.0% |
! | CTAAAATTATAATAGTCCGT+TGG | - | tig0014038:45992-46011 | None:intergenic | 25.0% |
!!! | TTTTAGTTTAGTGTACATGA+TGG | + | tig0014038:46006-46025 | Msa1353800:intron | 25.0% |
! | TATTGATACACTAATTGTTC+CGG | + | tig0014038:46492-46511 | Msa1353800:intron | 25.0% |
! | AGCAAAAAAAATGTTACTCA+TGG | + | tig0014038:46644-46663 | Msa1353800:intron | 25.0% |
!! | TTCAATACTCTTATTTAGGA+CGG | - | tig0014038:46723-46742 | None:intergenic | 25.0% |
! | TTATAGTTATAATTGCTGAG+CGG | + | tig0014038:46801-46820 | Msa1353800:intron | 25.0% |
! | TTAGATATTCATTGTACAAG+AGG | - | tig0014038:46892-46911 | None:intergenic | 25.0% |
!! | ACAGAAAGTTTTCTTTCTTA+TGG | + | tig0014038:46965-46984 | Msa1353800:intron | 25.0% |
!! | CAGAAAGTTTTCTTTCTTAT+GGG | + | tig0014038:46966-46985 | Msa1353800:intron | 25.0% |
!!! | TCTTTTTTTGTTGCTTTTGT+AGG | + | tig0014038:47191-47210 | Msa1353800:intron | 25.0% |
!! | TTTTAAATGATTACATTGCC+GGG | + | tig0014038:47262-47281 | Msa1353800:CDS | 25.0% |
!!! | GGTTTTTAAGTAAGTGGATT+GGG | - | tig0014038:42361-42380 | None:intergenic | 30.0% |
TGTTTGTTTGTTTATTGCAG+AGG | - | tig0014038:42444-42463 | None:intergenic | 30.0% | |
AGTGAAATGTGTTCATTCAT+CGG | - | tig0014038:42495-42514 | None:intergenic | 30.0% | |
TTTGAATTAGGTTCACGAAT+TGG | + | tig0014038:42657-42676 | Msa1353800:CDS | 30.0% | |
TAATTAGAAAGAAGTGAAGC+TGG | - | tig0014038:42738-42757 | None:intergenic | 30.0% | |
TCACTCAGTTTAAACAATAG+CGG | + | tig0014038:42810-42829 | Msa1353800:CDS | 30.0% | |
!! | TTGATTTTGATGAGTGATAC+TGG | + | tig0014038:43056-43075 | Msa1353800:CDS | 30.0% |
!!! | GCTGCTTTTTATCAAGAATA+TGG | + | tig0014038:43113-43132 | Msa1353800:CDS | 30.0% |
! | TTAAGAGCAAGGAGATTTTT+AGG | + | tig0014038:43402-43421 | Msa1353800:intron | 30.0% |
TTTAGGTAAAAAAGTTAGGG+TGG | + | tig0014038:43419-43438 | Msa1353800:intron | 30.0% | |
TTAGGTAAAAAAGTTAGGGT+GGG | + | tig0014038:43420-43439 | Msa1353800:intron | 30.0% | |
! | AAATCGATTCTGGTTAAAAG+TGG | + | tig0014038:43608-43627 | Msa1353800:intron | 30.0% |
! | AATCGATTCTGGTTAAAAGT+GGG | + | tig0014038:43609-43628 | Msa1353800:intron | 30.0% |
!!! | CTAACTTGGAACTAGTTTTT+TGG | + | tig0014038:43634-43653 | Msa1353800:intron | 30.0% |
! | TGCAAGTGAATGGTAATTTT+AGG | + | tig0014038:43709-43728 | Msa1353800:intron | 30.0% |
!!! | GAATGGTAATTTTAGGATTG+AGG | + | tig0014038:43716-43735 | Msa1353800:intron | 30.0% |
!!! | GTTGTGTTTTGTTTACACTT+TGG | + | tig0014038:43808-43827 | Msa1353800:intron | 30.0% |
!! | AGGTGTTTATTACCGATTTA+TGG | + | tig0014038:43845-43864 | Msa1353800:intron | 30.0% |
TGAAGTTATTTGACAAGAAC+TGG | - | tig0014038:44052-44071 | None:intergenic | 30.0% | |
TGAATTAGTATATGCCGTAA+TGG | + | tig0014038:44091-44110 | Msa1353800:intron | 30.0% | |
ATAAATGCATGTATGATGTG+TGG | - | tig0014038:44308-44327 | None:intergenic | 30.0% | |
TCCACATATAAAGATGTTTG+CGG | - | tig0014038:44553-44572 | None:intergenic | 30.0% | |
CAAACATCTTTATATGTGGA+AGG | + | tig0014038:44553-44572 | Msa1353800:intron | 30.0% | |
TGATACAATCTTAGAACTTG+AGG | - | tig0014038:44588-44607 | None:intergenic | 30.0% | |
! | CAGTAGTTATTGTAATTTGC+TGG | + | tig0014038:44860-44879 | Msa1353800:intron | 30.0% |
GATGCATATATTGTTTGTTC+TGG | + | tig0014038:44887-44906 | Msa1353800:intron | 30.0% | |
! | TGCACACTGATTATTATATC+AGG | - | tig0014038:45030-45049 | None:intergenic | 30.0% |
AGATGTCAAAATCAGACAAT+AGG | - | tig0014038:45207-45226 | None:intergenic | 30.0% | |
GTAGGCCATAAATCTTTATT+TGG | - | tig0014038:45330-45349 | None:intergenic | 30.0% | |
TTTATAAAGGAAGGTCTAAC+AGG | - | tig0014038:45352-45371 | None:intergenic | 30.0% | |
TTCTTGACTTCTTATAGCTA+TGG | + | tig0014038:45398-45417 | Msa1353800:intron | 30.0% | |
CAATTCAGAAAAGGTCATTT+GGG | - | tig0014038:45456-45475 | None:intergenic | 30.0% | |
ACAATTCAGAAAAGGTCATT+TGG | - | tig0014038:45457-45476 | None:intergenic | 30.0% | |
ATACAATGAGATGGGATAAT+AGG | + | tig0014038:45480-45499 | Msa1353800:intron | 30.0% | |
CATTTATGACAACAATGAGA+CGG | + | tig0014038:45577-45596 | Msa1353800:intron | 30.0% | |
ATTTATGACAACAATGAGAC+GGG | + | tig0014038:45578-45597 | Msa1353800:intron | 30.0% | |
! | GGTTCTGATTCTTTAACTAA+AGG | + | tig0014038:45964-45983 | Msa1353800:intron | 30.0% |
CTATTAACCATGTGTTTGAT+TGG | + | tig0014038:46142-46161 | Msa1353800:intron | 30.0% | |
TTCTCTAATAGGATGAACTA+AGG | + | tig0014038:46261-46280 | Msa1353800:intron | 30.0% | |
ATGAACTAAGGAGAGATTTA+GGG | + | tig0014038:46273-46292 | Msa1353800:CDS | 30.0% | |
TGGAGATTTATTAAATGACG+AGG | + | tig0014038:46376-46395 | Msa1353800:CDS | 30.0% | |
GGAGATTTATTAAATGACGA+GGG | + | tig0014038:46377-46396 | Msa1353800:CDS | 30.0% | |
GAGATTTATTAAATGACGAG+GGG | + | tig0014038:46378-46397 | Msa1353800:CDS | 30.0% | |
AGATTTATTAAATGACGAGG+GGG | + | tig0014038:46379-46398 | Msa1353800:CDS | 30.0% | |
ACAAACTCAGTTCTATTGAT+TGG | + | tig0014038:46453-46472 | Msa1353800:CDS | 30.0% | |
! | AATCTAGAACATGCATATAC+TGG | - | tig0014038:46538-46557 | None:intergenic | 30.0% |
!! | TTTACCAATGTTTTAGGTCA+TGG | + | tig0014038:47053-47072 | Msa1353800:intron | 30.0% |
!! | TTACCAATGTTTTAGGTCAT+GGG | + | tig0014038:47054-47073 | Msa1353800:intron | 30.0% |
TACCAAAATTGAAGAATGCA+TGG | + | tig0014038:47083-47102 | Msa1353800:CDS | 30.0% | |
ACCAAAATTGAAGAATGCAT+GGG | + | tig0014038:47084-47103 | Msa1353800:CDS | 30.0% | |
CTTTGTAATAATGCAATCAC+AGG | - | tig0014038:47112-47131 | None:intergenic | 30.0% | |
CTGTGATTGCATTATTACAA+AGG | + | tig0014038:47110-47129 | Msa1353800:CDS | 30.0% | |
GATTGCATTATTACAAAGGT+TGG | + | tig0014038:47114-47133 | Msa1353800:intron | 30.0% | |
TTGTGAAATAGTGTCTATAG+CGG | - | tig0014038:47464-47483 | None:intergenic | 30.0% | |
!!! | GGGTTTTTAAGTAAGTGGAT+TGG | - | tig0014038:42362-42381 | None:intergenic | 35.0% |
!!! | GAGTTGGGTTTTTAAGTAAG+TGG | - | tig0014038:42367-42386 | None:intergenic | 35.0% |
TTCATTCATCGGAGAAAATG+AGG | - | tig0014038:42484-42503 | None:intergenic | 35.0% | |
TAATGAGGTTGAAGAGGTTA+AGG | - | tig0014038:42525-42544 | None:intergenic | 35.0% | |
TTTGTGTAATGAGGTTGAAG+AGG | - | tig0014038:42531-42550 | None:intergenic | 35.0% | |
TGTTACAAAAGAACCCAATG+CGG | + | tig0014038:42632-42651 | Msa1353800:CDS | 35.0% | |
CCTAATTCAAAAACCGCATT+GGG | - | tig0014038:42648-42667 | None:intergenic | 35.0% | |
ACCTAATTCAAAAACCGCAT+TGG | - | tig0014038:42649-42668 | None:intergenic | 35.0% | |
!! | ATTTTGATGAGTGATACTGG+TGG | + | tig0014038:43059-43078 | Msa1353800:CDS | 35.0% |
AGAATATGGCGATGATTATC+AGG | + | tig0014038:43127-43146 | Msa1353800:CDS | 35.0% | |
TGTCTGTGTTAGGTAATTAG+AGG | + | tig0014038:43358-43377 | Msa1353800:intron | 35.0% | |
TAGGTAAAAAAGTTAGGGTG+GGG | + | tig0014038:43421-43440 | Msa1353800:intron | 35.0% | |
! | ATCGATTCTGGTTAAAAGTG+GGG | + | tig0014038:43610-43629 | Msa1353800:intron | 35.0% |
!!! | AATTTTAGGATTGAGGGTCA+TGG | + | tig0014038:43723-43742 | Msa1353800:intron | 35.0% |
CAACTTCAACATTCATAGCT+CGG | + | tig0014038:43998-44017 | Msa1353800:CDS | 35.0% | |
TGACTCATACATGAAAGTCA+GGG | + | tig0014038:44139-44158 | Msa1353800:intron | 35.0% | |
GTTTCATTGTCGTTATGAAC+TGG | + | tig0014038:44245-44264 | Msa1353800:intron | 35.0% | |
TATGAACTGGATTTCTCTAG+TGG | + | tig0014038:44258-44277 | Msa1353800:intron | 35.0% | |
AACTTGGCAATATTTCAGCA+CGG | + | tig0014038:44415-44434 | Msa1353800:intron | 35.0% | |
CTGTCATGCACTTTATTGTT+AGG | - | tig0014038:44465-44484 | None:intergenic | 35.0% | |
CCACATATAAAGATGTTTGC+GGG | - | tig0014038:44552-44571 | None:intergenic | 35.0% | |
ATTGTATCAGAGCCTATTCA+AGG | + | tig0014038:44599-44618 | Msa1353800:intron | 35.0% | |
TAGATTTGACAAATGGAGCA+TGG | - | tig0014038:44664-44683 | None:intergenic | 35.0% | |
CTAACTCAACCTTACAAAAC+CGG | - | tig0014038:44779-44798 | None:intergenic | 35.0% | |
AGTATAATATCACGTGTCAG+AGG | + | tig0014038:44946-44965 | Msa1353800:intron | 35.0% | |
! | TTTTACAGTGAGGTTGCTAA+AGG | + | tig0014038:44988-45007 | Msa1353800:intron | 35.0% |
GCTCAAATCTGTAATAACTG+TGG | - | tig0014038:45121-45140 | None:intergenic | 35.0% | |
ACTAAACTAACCATGTTGGA+TGG | - | tig0014038:45149-45168 | None:intergenic | 35.0% | |
CAGAACTAAACTAACCATGT+TGG | - | tig0014038:45153-45172 | None:intergenic | 35.0% | |
!! | CAACATGGTTAGTTTAGTTC+TGG | + | tig0014038:45151-45170 | Msa1353800:intron | 35.0% |
AACTACAGATGTTGCCAAAA+GGG | + | tig0014038:45279-45298 | Msa1353800:CDS | 35.0% | |
CTTCCTTTATAAAGCCTGTT+CGG | + | tig0014038:45359-45378 | Msa1353800:CDS | 35.0% | |
GCTATAAGAAGTCAAGAACA+TGG | - | tig0014038:45396-45415 | None:intergenic | 35.0% | |
TCTTATAGCTATGGCATGAT+TGG | + | tig0014038:45407-45426 | Msa1353800:intron | 35.0% | |
CGTCTCATTGTTGTCATAAA+TGG | - | tig0014038:45579-45598 | None:intergenic | 35.0% | |
!! | AGCCATTTTCTTTCTTGCTA+AGG | + | tig0014038:45606-45625 | Msa1353800:intron | 35.0% |
!! | GCCATTTTCTTTCTTGCTAA+GGG | + | tig0014038:45607-45626 | Msa1353800:intron | 35.0% |
ACCCTTAGCAAGAAAGAAAA+TGG | - | tig0014038:45611-45630 | None:intergenic | 35.0% | |
! | TTTTCTTTCTTGCTAAGGGT+AGG | + | tig0014038:45611-45630 | Msa1353800:intron | 35.0% |
GCTCAGATTAACAATAGATG+TGG | - | tig0014038:45732-45751 | None:intergenic | 35.0% | |
CATCTATTGTTAATCTGAGC+TGG | + | tig0014038:45732-45751 | Msa1353800:intron | 35.0% | |
! | ATATGATTGTTCATGGTGGA+TGG | + | tig0014038:45801-45820 | Msa1353800:intron | 35.0% |
TATCTTCCGTAGTTAGCATA+TGG | + | tig0014038:45853-45872 | Msa1353800:intron | 35.0% | |
ACTTCTCCATATGCTAACTA+CGG | - | tig0014038:45862-45881 | None:intergenic | 35.0% | |
TCTTTAACTAAAGGCTCCAA+CGG | + | tig0014038:45973-45992 | Msa1353800:intron | 35.0% | |
TGTTTGATTGGTATCTGCTT+TGG | + | tig0014038:46154-46173 | Msa1353800:intron | 35.0% | |
GATGAACTAAGGAGAGATTT+AGG | + | tig0014038:46272-46291 | Msa1353800:CDS | 35.0% | |
TCTTCCTGCTGTATTATTGA+TGG | + | tig0014038:46307-46326 | Msa1353800:CDS | 35.0% | |
CTTCCTGCTGTATTATTGAT+GGG | + | tig0014038:46308-46327 | Msa1353800:CDS | 35.0% | |
TTCCTGCTGTATTATTGATG+GGG | + | tig0014038:46309-46328 | Msa1353800:CDS | 35.0% | |
TAGTGTATCAATACCTTCAC+TGG | - | tig0014038:46485-46504 | None:intergenic | 35.0% | |
! | ATAGACTGTTGTCTAGTCTT+AGG | + | tig0014038:46569-46588 | Msa1353800:intron | 35.0% |
! | ATACTCTTATTTAGGACGGT+GGG | - | tig0014038:46719-46738 | None:intergenic | 35.0% |
! | AATACTCTTATTTAGGACGG+TGG | - | tig0014038:46720-46739 | None:intergenic | 35.0% |
AAAAAATGGAGTAGACGAGT+AGG | + | tig0014038:46745-46764 | Msa1353800:intron | 35.0% | |
! | GTTTTCTTTCTTATGGGTCA+AGG | + | tig0014038:46972-46991 | Msa1353800:intron | 35.0% |
AATCCCATGACCTAAAACAT+TGG | - | tig0014038:47060-47079 | None:intergenic | 35.0% | |
! | TCCCATGCATTCTTCAATTT+TGG | - | tig0014038:47088-47107 | None:intergenic | 35.0% |
CATCAACAACTGTCATAATG+AGG | - | tig0014038:47168-47187 | None:intergenic | 35.0% | |
CTCATTATGACAGTTGTTGA+TGG | + | tig0014038:47166-47185 | Msa1353800:intron | 35.0% | |
!!! | TTTTTGTTGCTTTTGTAGGC+TGG | + | tig0014038:47195-47214 | Msa1353800:intron | 35.0% |
AAAAATTCATGACAAGGTCG+AGG | - | tig0014038:47317-47336 | None:intergenic | 35.0% | |
!! | AAAGTTAGCTTGCACTATTG+TGG | + | tig0014038:47347-47366 | Msa1353800:CDS | 35.0% |
AATTTCAGAGTTGCAAGTTG+TGG | + | tig0014038:47385-47404 | Msa1353800:three_prime_UTR | 35.0% | |
ACTATAGCACTGTTATGCAA+CGG | - | tig0014038:47440-47459 | None:intergenic | 35.0% | |
!! | GAGTTGAGTTGAGTTGAGTT+GGG | - | tig0014038:42382-42401 | None:intergenic | 40.0% |
!! | TGAGTTGAGTTGAGTTGAGT+TGG | - | tig0014038:42383-42402 | None:intergenic | 40.0% |
! | GGTTGAAGAGGTTAAGGTTT+TGG | - | tig0014038:42519-42538 | None:intergenic | 40.0% |
! | CCCAATGCGGTTTTTGAATT+AGG | + | tig0014038:42645-42664 | Msa1353800:CDS | 40.0% |
!! | GTGAACATGCTTCTGAAGTT+AGG | - | tig0014038:42716-42735 | None:intergenic | 40.0% |
GTGTGAGGTTGTTGAAGTAA+AGG | - | tig0014038:42761-42780 | None:intergenic | 40.0% | |
CTCAGTTTAAACAATAGCGG+TGG | + | tig0014038:42813-42832 | Msa1353800:CDS | 40.0% | |
AGTTTAAACAATAGCGGTGG+TGG | + | tig0014038:42816-42835 | Msa1353800:CDS | 40.0% | |
TGATGTGGAAGATGAAGGAT+TGG | + | tig0014038:42995-43014 | Msa1353800:CDS | 40.0% | |
GATGTGGAAGATGAAGGATT+GGG | + | tig0014038:42996-43015 | Msa1353800:CDS | 40.0% | |
!! | TGATCAGAAGTGTCTGTGTT+AGG | + | tig0014038:43348-43367 | Msa1353800:intron | 40.0% |
!! | GGTGCTTTTGTTTAAGAGCA+AGG | + | tig0014038:43391-43410 | Msa1353800:intron | 40.0% |
! | TCGATTCTGGTTAAAAGTGG+GGG | + | tig0014038:43611-43630 | Msa1353800:intron | 40.0% |
GTCATGGAATGTTACTGTGA+AGG | + | tig0014038:43739-43758 | Msa1353800:intron | 40.0% | |
!! | CTTTGGAGTTAATGCTATGC+AGG | + | tig0014038:43825-43844 | Msa1353800:intron | 40.0% |
TGTGTGCTCAGACCATAAAT+CGG | - | tig0014038:43860-43879 | None:intergenic | 40.0% | |
TTGACTGATGAACTAGACGT+GGG | - | tig0014038:43969-43988 | None:intergenic | 40.0% | |
TTTGACTGATGAACTAGACG+TGG | - | tig0014038:43970-43989 | None:intergenic | 40.0% | |
!! | TTCATAGCTCGGTGAGATTT+TGG | + | tig0014038:44009-44028 | Msa1353800:intron | 40.0% |
GTGACTCATACATGAAAGTC+AGG | + | tig0014038:44138-44157 | Msa1353800:intron | 40.0% | |
! | ATGAAAGTCAGGGCATTAAC+TGG | + | tig0014038:44149-44168 | Msa1353800:intron | 40.0% |
AAAATGACTGCACGGTAACT+TGG | + | tig0014038:44399-44418 | Msa1353800:intron | 40.0% | |
! | CACGGTTCGGATTTGATATT+TGG | + | tig0014038:44433-44452 | Msa1353800:intron | 40.0% |
TGCAACTGCAGGTAATAAGA+GGG | - | tig0014038:44501-44520 | None:intergenic | 40.0% | |
TTGCAACTGCAGGTAATAAG+AGG | - | tig0014038:44502-44521 | None:intergenic | 40.0% | |
CTTCCACATTGGATGAGATT+AGG | + | tig0014038:44526-44545 | Msa1353800:intron | 40.0% | |
CCCGCAAACATCTTTATATG+TGG | + | tig0014038:44549-44568 | Msa1353800:intron | 40.0% | |
ATCTTAGAACTTGAGGCAAG+AGG | - | tig0014038:44581-44600 | None:intergenic | 40.0% | |
AGAGCCTATTCAAGGTCTAT+TGG | + | tig0014038:44607-44626 | Msa1353800:intron | 40.0% | |
GAGCCTATTCAAGGTCTATT+GGG | + | tig0014038:44608-44627 | Msa1353800:intron | 40.0% | |
! | CACGCTCTAGATTTGACAAA+TGG | - | tig0014038:44671-44690 | None:intergenic | 40.0% |
! | TTGTCAAATCTAGAGCGTGA+AGG | + | tig0014038:44672-44691 | Msa1353800:intron | 40.0% |
! | TGTCAAATCTAGAGCGTGAA+GGG | + | tig0014038:44673-44692 | Msa1353800:intron | 40.0% |
!! | CGGTTTTGTAAGGTTGAGTT+AGG | + | tig0014038:44777-44796 | Msa1353800:intron | 40.0% |
!!! | TCTTCGCATTTTGAGGTCAA+GGG | + | tig0014038:45071-45090 | Msa1353800:CDS | 40.0% |
! | CTTTTGGCAACATCTGTAGT+TGG | - | tig0014038:45280-45299 | None:intergenic | 40.0% |
CAACTACAGATGTTGCCAAA+AGG | + | tig0014038:45278-45297 | Msa1353800:CDS | 40.0% | |
TAAAGGAAGGTCTAACAGGT+AGG | - | tig0014038:45348-45367 | None:intergenic | 40.0% | |
! | CGAACAGGCTTTATAAAGGA+AGG | - | tig0014038:45361-45380 | None:intergenic | 40.0% |
TCAAGAACATGGCATACCTT+TGG | - | tig0014038:45385-45404 | None:intergenic | 40.0% | |
TAAGGGTAGGCATGTATTGT+CGG | + | tig0014038:45624-45643 | Msa1353800:intron | 40.0% | |
! | TGTATTGTCGGCTACAATCT+TGG | + | tig0014038:45636-45655 | Msa1353800:intron | 40.0% |
! | GAGAGATCAGACTTGATAAC+TGG | + | tig0014038:45766-45785 | Msa1353800:intron | 40.0% |
GCAGATACCAATCAAACACA+TGG | - | tig0014038:46152-46171 | None:intergenic | 40.0% | |
GATTGTCGAGCTTCTCTAAT+AGG | + | tig0014038:46250-46269 | Msa1353800:intron | 40.0% | |
ACTAAGGAGAGATTTAGGGA+TGG | + | tig0014038:46277-46296 | Msa1353800:CDS | 40.0% | |
TCCTGCTGTATTATTGATGG+GGG | + | tig0014038:46310-46329 | Msa1353800:CDS | 40.0% | |
ATCACAAGAATCTGACCTGT+GGG | - | tig0014038:46407-46426 | None:intergenic | 40.0% | |
TGATTGGAAGATTCCAGTGA+AGG | + | tig0014038:46469-46488 | Msa1353800:CDS | 40.0% | |
TGATACACTAATTGTTCCGG+CGG | + | tig0014038:46495-46514 | Msa1353800:intron | 40.0% | |
TCAAGTAAAATCACAACCGC+CGG | - | tig0014038:46514-46533 | None:intergenic | 40.0% | |
CTCACACTAGAAACTTTGCT+AGG | - | tig0014038:46856-46875 | None:intergenic | 40.0% | |
! | TCTTTTGTAACACGCGTAGC+TGG | - | tig0014038:42624-42643 | None:intergenic | 45.0% |
! | GCGGTGGTGGTTATAAGTTT+AGG | + | tig0014038:42829-42848 | Msa1353800:CDS | 45.0% |
CTGTTAGGGTTCATTGTGAG+AGG | + | tig0014038:42877-42896 | Msa1353800:CDS | 45.0% | |
CATTGTGAGAGGATTCCGAT+TGG | + | tig0014038:42888-42907 | Msa1353800:CDS | 45.0% | |
!! | GGAATGGTGTTGGTGGAAAT+GGG | + | tig0014038:42964-42983 | Msa1353800:CDS | 45.0% |
! | GTGTTGGTGGAAATGGGAAT+CGG | + | tig0014038:42970-42989 | Msa1353800:CDS | 45.0% |
! | TGTTGGTGGAAATGGGAATC+GGG | + | tig0014038:42971-42990 | Msa1353800:CDS | 45.0% |
!! | AAATGGGAATCGGGTTGATG+TGG | + | tig0014038:42980-42999 | Msa1353800:CDS | 45.0% |
GAAGGATTGGGATTGAAGAG+TGG | + | tig0014038:43008-43027 | Msa1353800:CDS | 45.0% | |
ATTGGGATTGAAGAGTGGTG+AGG | + | tig0014038:43013-43032 | Msa1353800:CDS | 45.0% | |
TTGGGATTGAAGAGTGGTGA+GGG | + | tig0014038:43014-43033 | Msa1353800:CDS | 45.0% | |
TGAGGGGAAGAAAGTGAAGA+AGG | + | tig0014038:43031-43050 | Msa1353800:CDS | 45.0% | |
TTGATGAGTGATACTGGTGG+TGG | + | tig0014038:43062-43081 | Msa1353800:CDS | 45.0% | |
AGTGTGTGGTGTCTATGTCA+GGG | - | tig0014038:43300-43319 | None:intergenic | 45.0% | |
GTTAAAAGTGGGGGCTAACT+TGG | + | tig0014038:43620-43639 | Msa1353800:intron | 45.0% | |
GGAATTTGATTGAACGGCCA+AGG | - | tig0014038:43883-43902 | None:intergenic | 45.0% | |
TAGTAGGTCATCCTCCACAA+CGG | - | tig0014038:43937-43956 | None:intergenic | 45.0% | |
TTGTGGAGGATGACCTACTA+TGG | + | tig0014038:43937-43956 | Msa1353800:CDS | 45.0% | |
GAGGATGACCTACTATGGAA+CGG | + | tig0014038:43942-43961 | Msa1353800:CDS | 45.0% | |
TGACTGATGAACTAGACGTG+GGG | - | tig0014038:43968-43987 | None:intergenic | 45.0% | |
GAACTGGATTTCTCTAGTGG+TGG | + | tig0014038:44261-44280 | Msa1353800:intron | 45.0% | |
GGCAATATTTCAGCACGGTT+CGG | + | tig0014038:44420-44439 | Msa1353800:intron | 45.0% | |
GTTGCAATGTGCTTCCACAT+TGG | + | tig0014038:44515-44534 | Msa1353800:intron | 45.0% | |
TGGCCCAATAGACCTTGAAT+AGG | - | tig0014038:44614-44633 | None:intergenic | 45.0% | |
CTATCATGTCTCCCACTACT+GGG | + | tig0014038:44638-44657 | Msa1353800:intron | 45.0% | |
GTTTGTCAAGAGTCCCACAT+TGG | + | tig0014038:44697-44716 | Msa1353800:intron | 45.0% | |
! | ACGTTCCTCTTCGCATTTTG+AGG | + | tig0014038:45064-45083 | Msa1353800:CDS | 45.0% |
CTTGACCTCAAAATGCGAAG+AGG | - | tig0014038:45072-45091 | None:intergenic | 45.0% | |
!!! | CTCTTCGCATTTTGAGGTCA+AGG | + | tig0014038:45070-45089 | Msa1353800:CDS | 45.0% |
!!! | CTTCGCATTTTGAGGTCAAG+GGG | + | tig0014038:45072-45091 | Msa1353800:CDS | 45.0% |
TGTTGCCAAAAGGGCAATGA+AGG | + | tig0014038:45288-45307 | Msa1353800:CDS | 45.0% | |
! | TGGCCGAACAGGCTTTATAA+AGG | - | tig0014038:45365-45384 | None:intergenic | 45.0% |
TATAAAGCCTGTTCGGCCAA+AGG | + | tig0014038:45366-45385 | Msa1353800:CDS | 45.0% | |
ATCAAGTCTGATCTCTCCCT+AGG | - | tig0014038:45763-45782 | None:intergenic | 45.0% | |
TGGTATCTGCTTTGGCTGAT+TGG | + | tig0014038:46162-46181 | Msa1353800:intron | 45.0% | |
GAGAGATTTAGGGATGGATG+AGG | + | tig0014038:46283-46302 | Msa1353800:CDS | 45.0% | |
CCTGCTGTATTATTGATGGG+GGG | + | tig0014038:46311-46330 | Msa1353800:CDS | 45.0% | |
GATCACAAGAATCTGACCTG+TGG | - | tig0014038:46408-46427 | None:intergenic | 45.0% | |
GGTCAGATTCTTGTGATCTG+TGG | + | tig0014038:46410-46429 | Msa1353800:CDS | 45.0% | |
GGTCAAGGTAGAAGATGTCT+GGG | + | tig0014038:46987-47006 | Msa1353800:intron | 45.0% | |
GTCAAGGTAGAAGATGTCTG+GGG | + | tig0014038:46988-47007 | Msa1353800:intron | 45.0% | |
AAGGTTGGATCTCATTGTCG+CGG | + | tig0014038:47129-47148 | Msa1353800:intron | 45.0% | |
AAATGATTACATTGCCGGGC+AGG | + | tig0014038:47266-47285 | Msa1353800:CDS | 45.0% | |
TTCATGACAAGGTCGAGGAA+TGG | - | tig0014038:47312-47331 | None:intergenic | 45.0% | |
CTTCAACAACCTCACACGTG+TGG | + | tig0014038:42764-42783 | Msa1353800:CDS | 50.0% | |
! | ATGATGATGCCACACGTGTG+AGG | - | tig0014038:42776-42795 | None:intergenic | 50.0% |
!! | GGGAATGGTGTTGGTGGAAA+TGG | + | tig0014038:42963-42982 | Msa1353800:CDS | 50.0% |
!! | CGGGTTGATGTGGAAGATGA+AGG | + | tig0014038:42990-43009 | Msa1353800:CDS | 50.0% |
TGGGATTGAAGAGTGGTGAG+GGG | + | tig0014038:43015-43034 | Msa1353800:CDS | 50.0% | |
CAGTGTGTGGTGTCTATGTC+AGG | - | tig0014038:43301-43320 | None:intergenic | 50.0% | |
TATGGTCTGAGCACACACCT+TGG | + | tig0014038:43863-43882 | Msa1353800:CDS | 50.0% | |
TGGTGAAACATGGACCGTTG+TGG | + | tig0014038:43920-43939 | Msa1353800:CDS | 50.0% | |
TGAAACATGGACCGTTGTGG+AGG | + | tig0014038:43923-43942 | Msa1353800:CDS | 50.0% | |
! | TGGAAGCACATTGCAACTGC+AGG | - | tig0014038:44512-44531 | None:intergenic | 50.0% |
GGGCCTAATCTCATCCAATG+TGG | - | tig0014038:44532-44551 | None:intergenic | 50.0% | |
! | GTAGTGGGAGACATGATAGC+TGG | - | tig0014038:44637-44656 | None:intergenic | 50.0% |
GCTATCATGTCTCCCACTAC+TGG | + | tig0014038:44637-44656 | Msa1353800:intron | 50.0% | |
!! | AAAACCGGCTTGCAAGGTGA+GGG | - | tig0014038:44764-44783 | None:intergenic | 50.0% |
!! | CCTTACAAAACCGGCTTGCA+AGG | - | tig0014038:44770-44789 | None:intergenic | 50.0% |
!! | CCTTGCAAGCCGGTTTTGTA+AGG | + | tig0014038:44767-44786 | Msa1353800:intron | 50.0% |
AGAGGAACGTGTTGCATCAG+TGG | - | tig0014038:45054-45073 | None:intergenic | 50.0% | |
TGAGCACATGCCATCCAACA+TGG | + | tig0014038:45136-45155 | Msa1353800:CDS | 50.0% | |
! | TCCAGCCTTCATTGCCCTTT+TGG | - | tig0014038:45296-45315 | None:intergenic | 50.0% |
AGTCTGATCTCTCCCTAGGT+GGG | - | tig0014038:45759-45778 | None:intergenic | 50.0% | |
AAGTCTGATCTCTCCCTAGG+TGG | - | tig0014038:45760-45779 | None:intergenic | 50.0% | |
CCCCCCATCAATAATACAGC+AGG | - | tig0014038:46314-46333 | None:intergenic | 50.0% | |
GCTGTATTATTGATGGGGGG+AGG | + | tig0014038:46314-46333 | Msa1353800:CDS | 50.0% | |
TTATTGATGGGGGGAGGTGA+AGG | + | tig0014038:46320-46339 | Msa1353800:CDS | 50.0% | |
GTCCCATTGAAGCTACTGCT+CGG | + | tig0014038:46348-46367 | Msa1353800:CDS | 50.0% | |
TCCCATTGAAGCTACTGCTC+GGG | + | tig0014038:46349-46368 | Msa1353800:CDS | 50.0% | |
GGGTCAAGGTAGAAGATGTC+TGG | + | tig0014038:46986-47005 | Msa1353800:intron | 50.0% | |
ATTGCAGAGGCCATGATTCG+AGG | + | tig0014038:47228-47247 | Msa1353800:CDS | 50.0% | |
AATAGGCAGGCCTCGAATCA+TGG | - | tig0014038:47241-47260 | None:intergenic | 50.0% | |
TGAGAACCACATTACCTGCC+CGG | - | tig0014038:47283-47302 | None:intergenic | 50.0% | |
TCCGATTGGATTCGCTTCGC+TGG | + | tig0014038:42902-42921 | Msa1353800:CDS | 55.0% | |
CCCAGCGAAGCGAATCCAAT+CGG | - | tig0014038:42906-42925 | None:intergenic | 55.0% | |
CCGATTGGATTCGCTTCGCT+GGG | + | tig0014038:42903-42922 | Msa1353800:CDS | 55.0% | |
!! | GCTTCGCTGGGAGTTGATGA+CGG | + | tig0014038:42915-42934 | Msa1353800:CDS | 55.0% |
AGACACCACACACTGACACG+TGG | + | tig0014038:43306-43325 | Msa1353800:intron | 55.0% | |
GTGGGAGACATGATAGCTGG+TGG | - | tig0014038:44634-44653 | None:intergenic | 55.0% | |
ATGGAGCATGGCCCAGTAGT+GGG | - | tig0014038:44652-44671 | None:intergenic | 55.0% | |
AATGGAGCATGGCCCAGTAG+TGG | - | tig0014038:44653-44672 | None:intergenic | 55.0% | |
!! | CAAAACCGGCTTGCAAGGTG+AGG | - | tig0014038:44765-44784 | None:intergenic | 55.0% |
GCCAAAAGGGCAATGAAGGC+TGG | + | tig0014038:45292-45311 | Msa1353800:CDS | 55.0% | |
TGGCATACCTTTGGCCGAAC+AGG | - | tig0014038:45376-45395 | None:intergenic | 55.0% | |
AATCTGAGCTGGTCCCACCT+AGG | + | tig0014038:45743-45762 | Msa1353800:intron | 55.0% | |
ATCTGAGCTGGTCCCACCTA+GGG | + | tig0014038:45744-45763 | Msa1353800:intron | 55.0% | |
GCCCGAGCAGTAGCTTCAAT+GGG | - | tig0014038:46353-46372 | None:intergenic | 55.0% | |
TGCCCGAGCAGTAGCTTCAA+TGG | - | tig0014038:46354-46373 | None:intergenic | 55.0% | |
!! | TTGCTTTTGTAGGCTGGCCC+AGG | + | tig0014038:47201-47220 | Msa1353800:intron | 55.0% |
!! | TGCTTTTGTAGGCTGGCCCA+GGG | + | tig0014038:47202-47221 | Msa1353800:intron | 55.0% |
TGGCCTCTGCAATTGTCCCT+GGG | - | tig0014038:47221-47240 | None:intergenic | 55.0% | |
ATGGCCTCTGCAATTGTCCC+TGG | - | tig0014038:47222-47241 | None:intergenic | 55.0% | |
ACATTGCCGGGCAGGTAATG+TGG | + | tig0014038:47274-47293 | Msa1353800:CDS | 55.0% | |
!! | TCGCTGGGAGTTGATGACGG+TGG | + | tig0014038:42918-42937 | Msa1353800:CDS | 60.0% |
!! | CTGGGAGTTGATGACGGTGG+TGG | + | tig0014038:42921-42940 | Msa1353800:CDS | 60.0% |
!! | GGAGTTGATGACGGTGGTGG+TGG | + | tig0014038:42924-42943 | Msa1353800:CDS | 60.0% |
!! | GTTGATGACGGTGGTGGTGG+TGG | + | tig0014038:42927-42946 | Msa1353800:CDS | 60.0% |
!! | TGGTGGTGGTGTTGGTGGTG+AGG | + | tig0014038:42941-42960 | Msa1353800:CDS | 60.0% |
!! | GGTGGTGGTGTTGGTGGTGA+GGG | + | tig0014038:42942-42961 | Msa1353800:CDS | 60.0% |
!! | GTGGTGGTGTTGGTGGTGAG+GGG | + | tig0014038:42943-42962 | Msa1353800:CDS | 60.0% |
!! | GGTGTTGGTGGTGAGGGGAA+TGG | + | tig0014038:42948-42967 | Msa1353800:CDS | 60.0% |
GGTGGTGAGGGGAATGGTGT+TGG | + | tig0014038:42954-42973 | Msa1353800:CDS | 60.0% | |
! | GGTGAGGGGAATGGTGTTGG+TGG | + | tig0014038:42957-42976 | Msa1353800:CDS | 60.0% |
GTCTGCCACGTGTCAGTGTG+TGG | - | tig0014038:43314-43333 | None:intergenic | 60.0% | |
CACTGACACGTGGCAGACAC+TGG | + | tig0014038:43316-43335 | Msa1353800:intron | 60.0% | |
ACGTGGGGCCGTTCCATAGT+AGG | - | tig0014038:43953-43972 | None:intergenic | 60.0% | |
! | ATGGGGGGAGGTGAAGGCAT+GGG | + | tig0014038:46326-46345 | Msa1353800:CDS | 60.0% |
GAAGCTACTGCTCGGGCACT+TGG | + | tig0014038:46356-46375 | Msa1353800:CDS | 60.0% | |
AATGACGAGGGGGTTCCCAC+AGG | + | tig0014038:46389-46408 | Msa1353800:CDS | 60.0% | |
TGGCCCAGGGACAATTGCAG+AGG | + | tig0014038:47215-47234 | Msa1353800:CDS | 60.0% | |
!! | GACGGTGGTGGTGGTGGTGT+TGG | + | tig0014038:42933-42952 | Msa1353800:CDS | 65.0% |
!! | GGTGGTGGTGGTGGTGTTGG+TGG | + | tig0014038:42936-42955 | Msa1353800:CDS | 65.0% |
GCGTCCCTCACCTTGCAAGC+CGG | + | tig0014038:44757-44776 | Msa1353800:intron | 65.0% | |
GATGGGGGGAGGTGAAGGCA+TGG | + | tig0014038:46325-46344 | Msa1353800:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0014038 | gene | 42352 | 47531 | 42352 | ID=Msa1353800;Name=Msa1353800 |
tig0014038 | mRNA | 42352 | 47531 | 42352 | ID=Msa1353800-mRNA-1;Parent=Msa1353800;Name=Msa1353800-mRNA-1;_AED=0.04;_eAED=0.04;_QI=260|1|1|1|1|1|7|154|486 |
tig0014038 | exon | 42352 | 43148 | 42352 | ID=Msa1353800-mRNA-1:exon:8804;Parent=Msa1353800-mRNA-1 |
tig0014038 | exon | 43847 | 44019 | 43847 | ID=Msa1353800-mRNA-1:exon:8805;Parent=Msa1353800-mRNA-1 |
tig0014038 | exon | 44996 | 45157 | 44996 | ID=Msa1353800-mRNA-1:exon:8806;Parent=Msa1353800-mRNA-1 |
tig0014038 | exon | 45246 | 45387 | 45246 | ID=Msa1353800-mRNA-1:exon:8807;Parent=Msa1353800-mRNA-1 |
tig0014038 | exon | 46272 | 46490 | 46272 | ID=Msa1353800-mRNA-1:exon:8808;Parent=Msa1353800-mRNA-1 |
tig0014038 | exon | 47069 | 47131 | 47069 | ID=Msa1353800-mRNA-1:exon:8809;Parent=Msa1353800-mRNA-1 |
tig0014038 | exon | 47213 | 47531 | 47213 | ID=Msa1353800-mRNA-1:exon:8810;Parent=Msa1353800-mRNA-1 |
tig0014038 | five_prime_UTR | 42352 | 42611 | 42352 | ID=Msa1353800-mRNA-1:five_prime_utr;Parent=Msa1353800-mRNA-1 |
tig0014038 | CDS | 42612 | 43148 | 42612 | ID=Msa1353800-mRNA-1:cds;Parent=Msa1353800-mRNA-1 |
tig0014038 | CDS | 43847 | 44019 | 43847 | ID=Msa1353800-mRNA-1:cds;Parent=Msa1353800-mRNA-1 |
tig0014038 | CDS | 44996 | 45157 | 44996 | ID=Msa1353800-mRNA-1:cds;Parent=Msa1353800-mRNA-1 |
tig0014038 | CDS | 45246 | 45387 | 45246 | ID=Msa1353800-mRNA-1:cds;Parent=Msa1353800-mRNA-1 |
tig0014038 | CDS | 46272 | 46490 | 46272 | ID=Msa1353800-mRNA-1:cds;Parent=Msa1353800-mRNA-1 |
tig0014038 | CDS | 47069 | 47131 | 47069 | ID=Msa1353800-mRNA-1:cds;Parent=Msa1353800-mRNA-1 |
tig0014038 | CDS | 47213 | 47377 | 47213 | ID=Msa1353800-mRNA-1:cds;Parent=Msa1353800-mRNA-1 |
tig0014038 | three_prime_UTR | 47378 | 47531 | 47378 | ID=Msa1353800-mRNA-1:three_prime_utr;Parent=Msa1353800-mRNA-1 |
Gene Sequence |
Protein sequence |