AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0007020

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0007020 MtrunA17_Chr1g0203761 65.909 88 23 1 2 82 106 193 3.25e-30 111
Msa0007020 MtrunA17_Chr2g0325911 35.714 126 48 5 58 154 221 342 1.32e-14 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0007020 AT5G52100.1 45.536 112 54 1 2 106 101 212 1.17e-21 89.4

Find 137 sgRNAs with CRISPR-Local

Find 324 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAAACCTGAGTTTGTTTA+TGG 0.100230 1_1:-10061051 Msa0007020:CDS
GACTGACTTTGATCTGAATT+TGG 0.128802 1_1:-10061534 Msa0007020:CDS
AGTAAAGGAAAGATAATAAT+AGG 0.187247 1_1:-10060369 Msa0007020:three_prime_UTR
GTGGAACAGGTTGTAATAAA+TGG 0.207909 1_1:-10063599 Msa0007020:intron
AACAGAAGATAGTTGATTAT+TGG 0.224941 1_1:-10061019 Msa0007020:three_prime_UTR
AATCAACTATCTTCTGTTAT+AGG 0.232152 1_1:+10061024 None:intergenic
AGAGATAAAGTATGTTATAT+TGG 0.274675 1_1:-10064302 Msa0007020:five_prime_UTR
CAATTTCGACGTTGCGGTAA+TGG 0.296694 1_1:+10062401 None:intergenic
TTATGATAGGCAATCCTATC+TGG 0.308805 1_1:+10060342 None:intergenic
GCAGATGATGATTACATATC+AGG 0.313619 1_1:-10060653 Msa0007020:intron
CACTGATACAAGAGCCTTGA+TGG 0.321757 1_1:-10060619 Msa0007020:three_prime_UTR
GAGCTGTTTGCAAGGCTATA+TGG 0.324607 1_1:+10060514 None:intergenic
GCATCCTCGAAGGAGTTTAA+AGG 0.331002 1_1:-10061437 Msa0007020:intron
AGAAGAGAGGTGAGAAGAAC+GGG 0.338133 1_1:-10065545 Msa0007020:five_prime_UTR
CAAGGATGTGCAGCCTTATG+AGG 0.363133 1_1:+10060881 None:intergenic
ACTATATAGGCAACAACATT+TGG 0.363452 1_1:-10062774 Msa0007020:intron
GACTACAACCGCTGTGGCCT+TGG 0.364137 1_1:+10063156 None:intergenic
ATATGGTATAAGTATTTAAT+CGG 0.365194 1_1:+10060531 None:intergenic
TAATAATAGGGTTTCCAGAT+AGG 0.365703 1_1:-10060356 Msa0007020:three_prime_UTR
GTGAGAAGAACGGGAAAAGA+AGG 0.370379 1_1:-10065536 Msa0007020:five_prime_UTR
ACTGACTTTGATCTGAATTT+GGG 0.377930 1_1:-10061533 Msa0007020:CDS
CGGGAAAAGAAGGGAGGTCG+AGG 0.385854 1_1:-10065526 Msa0007020:five_prime_UTR
GAGATAAAGTATGTTATATT+GGG 0.394913 1_1:-10064301 Msa0007020:five_prime_UTR
GTACATGCCGCGGATCAAAT+TGG 0.402326 1_1:-10062736 Msa0007020:CDS
ATGCATAGGGCCAATCAGTT+GGG 0.408330 1_1:+10060436 None:intergenic
GAGATGAGAAGAAGAGGAAA+CGG 0.410173 1_1:-10065503 Msa0007020:five_prime_UTR
TCTGAAGAAGTTAAAATCTC+TGG 0.431243 1_1:+10060824 None:intergenic
TCACCCCTTGCTCACCATGC+TGG 0.433731 1_1:+10062677 None:intergenic
AGTATATGACAATGTAAAAC+AGG 0.435138 1_1:-10063113 Msa0007020:intron
CTTATTCCAGGTTTCATCCA+TGG 0.441827 1_1:-10061125 Msa0007020:intron
GTAAAGGAAAGATAATAATA+GGG 0.442334 1_1:-10060368 Msa0007020:three_prime_UTR
ATCACAAACGAAATATTTGA+TGG 0.443327 1_1:-10060483 Msa0007020:three_prime_UTR
AAGAAGAGAGGTGAGAAGAA+CGG 0.444699 1_1:-10065546 Msa0007020:five_prime_UTR
CAGATTCAGTGGAATCTGTA+AGG 0.450140 1_1:-10060805 Msa0007020:three_prime_UTR
TTGCAGACTATTTGTAAGCC+AGG 0.450460 1_1:+10060285 None:intergenic
TCTTACATTTGCATTAGCCT+TGG 0.452314 1_1:+10062372 None:intergenic
GCAAATTATTATAAGAGTAA+AGG 0.452896 1_1:-10060384 Msa0007020:three_prime_UTR
GGTGAGGTCTAAATCTTTCA+AGG 0.460191 1_1:+10060863 None:intergenic
TACATAGCAGAAATTCTTTG+AGG 0.464491 1_1:-10060972 Msa0007020:three_prime_UTR
TTCATCCATGGGCTCTTCAC+AGG 0.471535 1_1:-10061113 Msa0007020:CDS
AAACGGGTACGGGAGAAAGA+AGG 0.472509 1_1:-10065486 Msa0007020:five_prime_UTR
TCCAGAAACTTCCATTCCTC+TGG 0.475788 1_1:+10063529 None:intergenic
GAAATATTTGATGGTGCTAA+AGG 0.477207 1_1:-10060474 Msa0007020:three_prime_UTR
ATAGCCTCTTCACTTAGGCT+TGG 0.478230 1_1:+10060763 None:intergenic
TTAAACTCCTTCGAGGATGC+AGG 0.479138 1_1:+10061440 None:intergenic
ACAAATAGTCTGCAATGAAA+AGG 0.479215 1_1:-10060277 Msa0007020:three_prime_UTR
CTTGCATAGCCTCTTCACTT+AGG 0.480071 1_1:+10060758 None:intergenic
TTTGTGAGTTATGGGTGAGA+GGG 0.483586 1_1:+10065403 None:intergenic
TATACCTTTAAACTCCTTCG+AGG 0.483660 1_1:+10061433 None:intergenic
ATCATGTATCTCCTTATGAT+AGG 0.485561 1_1:+10060329 None:intergenic
TGAGAAGAACGGGAAAAGAA+GGG 0.486361 1_1:-10065535 Msa0007020:five_prime_UTR
GATGGAAAGAAGAAGGAAGA+AGG 0.490833 1_1:-10065059 Msa0007020:five_prime_UTR
TTATTCCAGGTTTCATCCAT+GGG 0.490950 1_1:-10061124 Msa0007020:intron
CTTTGATCTGAATTTGGGCA+TGG 0.492884 1_1:-10061528 Msa0007020:CDS
CATGGGCTCTTCACAGGAAG+TGG 0.492997 1_1:-10061107 Msa0007020:CDS
ACGGGTACGGGAGAAAGAAG+GGG 0.495118 1_1:-10065484 Msa0007020:five_prime_UTR
CGGGTACGGGAGAAAGAAGG+GGG 0.496168 1_1:-10065483 Msa0007020:five_prime_UTR
AGATAGGATTGCCTATCATA+AGG 0.496987 1_1:-10060340 Msa0007020:three_prime_UTR
CACTTCCTGTGAAGAGCCCA+TGG 0.499204 1_1:+10061108 None:intergenic
TTCCTTGAGTCTCTCTTGTG+AGG 0.500081 1_1:+10061075 None:intergenic
ATGGAAAGAAGAAGGAAGAA+GGG 0.501486 1_1:-10065058 Msa0007020:five_prime_UTR
AGAAGAAGAGGAAACGGGTA+CGG 0.501673 1_1:-10065497 Msa0007020:five_prime_UTR
ATGATACATGATATTAGAAA+AGG 0.502189 1_1:-10060311 Msa0007020:three_prime_UTR
AACTGATTGGCCCTATGCAT+GGG 0.502435 1_1:-10060433 Msa0007020:three_prime_UTR
TGGAGTTCAAAGCTGGAGTA+AGG 0.503066 1_1:-10060599 Msa0007020:three_prime_UTR
TCGAGGGAGATGAGAAGAAG+AGG 0.505017 1_1:-10065509 Msa0007020:five_prime_UTR
AACGGGTACGGGAGAAAGAA+GGG 0.509081 1_1:-10065485 Msa0007020:five_prime_UTR
TGATGCAGATGGAAAGAAGA+AGG 0.510322 1_1:-10065066 Msa0007020:five_prime_UTR
CAACTGATTGGCCCTATGCA+TGG 0.512282 1_1:-10060434 Msa0007020:three_prime_UTR
CTCTGGTGTATGCAGCAAGA+AGG 0.513021 1_1:+10060841 None:intergenic
TGTAGGAGCATTCCCTCATA+AGG 0.514702 1_1:-10060894 Msa0007020:three_prime_UTR
TTTAACTTCTTCAGATTCAG+TGG 0.515006 1_1:-10060816 Msa0007020:three_prime_UTR
GCCTTGATGGAGTTCAAAGC+TGG 0.517462 1_1:-10060606 Msa0007020:three_prime_UTR
TTACCGCAACGTCGAAATTG+TGG 0.519053 1_1:-10062398 Msa0007020:CDS
GGGAATGCATTGTTCAAAGC+TGG 0.521453 1_1:-10065038 Msa0007020:intron
GAAGGCCAGCATGGTGAGCA+AGG 0.524736 1_1:-10062682 Msa0007020:CDS
ATGCAAGTTGAGGAAGAAGA+AGG 0.525389 1_1:+10065429 None:intergenic
AGATGAGAAGAAGAGGAAAC+GGG 0.525399 1_1:-10065502 Msa0007020:five_prime_UTR
ACATTGTCATATACTGCAGA+AGG 0.525891 1_1:+10063121 None:intergenic
GAGAGGGAGTATGCAAGTTG+AGG 0.526483 1_1:+10065419 None:intergenic
CATGCATAGGGCCAATCAGT+TGG 0.529277 1_1:+10060435 None:intergenic
TATATGAGAAACTATGAACT+TGG 0.533433 1_1:-10060223 Msa0007020:three_prime_UTR
AAAGAAGATTGATGCAGATG+AGG 0.536126 1_1:-10065096 Msa0007020:five_prime_UTR
TCCAGCTTTGAACTCCATCA+AGG 0.536851 1_1:+10060605 None:intergenic
GAGGAAAGAATTGATGCAGA+TGG 0.541097 1_1:-10065077 Msa0007020:five_prime_UTR
ACAGAAGTTAAAGAGAATCA+AGG 0.543151 1_1:-10065322 Msa0007020:intron
AAGGCCAGCATGGTGAGCAA+GGG 0.543494 1_1:-10062681 Msa0007020:CDS
TGTAATAAATGGAGCAGCAA+AGG 0.543811 1_1:-10063588 Msa0007020:five_prime_UTR
TCTAAAATGCAAGGGAAGAG+AGG 0.545819 1_1:-10061561 Msa0007020:CDS
CGTCGAAATTGTGGAATCCA+AGG 0.546529 1_1:-10062389 Msa0007020:CDS
AGCAGTATTAGCTGTGACAA+AGG 0.549949 1_1:-10063552 Msa0007020:five_prime_UTR
GAAGAAGAGGAAACGGGTAC+GGG 0.556656 1_1:-10065496 Msa0007020:five_prime_UTR
TGCAGACTATTTGTAAGCCA+GGG 0.558908 1_1:+10060286 None:intergenic
TGCATAGGGCCAATCAGTTG+GGG 0.559790 1_1:+10060437 None:intergenic
TGCTCCAAGCCTAAGTGAAG+AGG 0.559997 1_1:-10060767 Msa0007020:three_prime_UTR
GGCAAGCCATAAACAAACTC+AGG 0.560166 1_1:+10061045 None:intergenic
CAAAGCAGCTCTAAAATGCA+AGG 0.560883 1_1:-10061570 Msa0007020:CDS
AAGGATGTGCAGCCTTATGA+GGG 0.571624 1_1:+10060882 None:intergenic
AAGCTTCAATTACTCAACAA+TGG 0.573660 1_1:+10065376 None:intergenic
CTTCAATTACTCAACAATGG+AGG 0.576182 1_1:+10065379 None:intergenic
CTGTCATTGAGCTGTTTGCA+AGG 0.576829 1_1:+10060506 None:intergenic
TGATATTAGAAAAGGATCCC+TGG 0.578018 1_1:-10060303 Msa0007020:three_prime_UTR
GACAAAATACAATTACTATG+AGG 0.578080 1_1:-10060411 Msa0007020:three_prime_UTR
TCTGGTGTATGCAGCAAGAA+GGG 0.579600 1_1:+10060842 None:intergenic
GCCGCGGATCAAATTGGATA+CGG 0.582539 1_1:-10062730 Msa0007020:CDS
AAAGAAGAAGGAAAACAGAA+CGG 0.584572 1_1:-10065575 Msa0007020:five_prime_UTR
GTCATCGATAAACTCACGAC+AGG 0.586511 1_1:-10063972 Msa0007020:intron
GGGAAAAGAAGGGAGGTCGA+GGG 0.588214 1_1:-10065525 Msa0007020:five_prime_UTR
TGTGACAAAGGCCAGAGGAA+TGG 0.593244 1_1:-10063540 Msa0007020:exon
TAGAAAACAAAGTTTACAAG+TGG 0.593903 1_1:-10064025 Msa0007020:five_prime_UTR
CAAGACTTTCAATATATGCA+TGG 0.601988 1_1:-10060134 Msa0007020:three_prime_UTR
AATGGAGCAGCAAAGGAGGT+AGG 0.602441 1_1:-10063581 Msa0007020:five_prime_UTR
GAATCCTCTGAATTATACTC+AGG 0.606536 1_1:-10064206 Msa0007020:intron
AATAAATGGAGCAGCAAAGG+AGG 0.611168 1_1:-10063585 Msa0007020:five_prime_UTR
ATTGTCTGCATTCTGCGAGA+AGG 0.616513 1_1:-10062700 Msa0007020:CDS
AGGCCAGCATGGTGAGCAAG+GGG 0.616804 1_1:-10062680 Msa0007020:intron
TAGAAGGATTCATCACGTGT+AGG 0.618364 1_1:-10060911 Msa0007020:three_prime_UTR
GAACGGACAGAGAAGAAGAG+AGG 0.626046 1_1:-10065558 Msa0007020:five_prime_UTR
ATTCCACAATTTCGACGTTG+CGG 0.630579 1_1:+10062395 None:intergenic
ACCGTATCCAATTTGATCCG+CGG 0.631428 1_1:+10062729 None:intergenic
CATTGTCATATACTGCAGAA+GGG 0.632959 1_1:+10063122 None:intergenic
CTAACCTGAGTATAATTCAG+AGG 0.633689 1_1:+10064202 None:intergenic
CTTACAACCTGCATCCTCGA+AGG 0.638582 1_1:-10061447 Msa0007020:CDS
CAAGTTGAGGAAGAAGAAGG+AGG 0.639497 1_1:+10065432 None:intergenic
AAAGCAGCTCTAAAATGCAA+GGG 0.646780 1_1:-10061569 Msa0007020:CDS
ATTCTGCGAGAAGGCCAGCA+TGG 0.649764 1_1:-10062691 Msa0007020:CDS
CATGAACCTAAAGAAAACAA+AGG 0.659528 1_1:-10061494 Msa0007020:CDS
AGCCTCACAAGAGAGACTCA+AGG 0.664869 1_1:-10061077 Msa0007020:CDS
AAAGCGTTGTGTACATGCCG+CGG 0.666394 1_1:-10062746 Msa0007020:CDS
TGTATGCAGCAAGAAGGGTG+AGG 0.675322 1_1:+10060847 None:intergenic
GGGTACGGGAGAAAGAAGGG+GGG 0.675465 1_1:-10065482 Msa0007020:five_prime_UTR
TATATTGGGAGAGAAAGCTA+AGG 0.687081 1_1:-10064287 Msa0007020:five_prime_UTR
GCATAGGGCCAATCAGTTGG+GGG 0.712704 1_1:+10060438 None:intergenic
TTTGCAGTCCAAGGCCACAG+CGG 0.725554 1_1:-10063164 Msa0007020:intron
GAAGAACGGGAAAAGAAGGG+AGG 0.729278 1_1:-10065532 Msa0007020:five_prime_UTR
TTAGCTGTGACAAAGGCCAG+AGG 0.735270 1_1:-10063545 Msa0007020:five_prime_UTR
GAAATCGACTACAACCGCTG+TGG 0.746133 1_1:+10063150 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTGATGTAAAAAATAAAT+GGG - chr1_1:10060842-10060861 Msa0007020:three_prime_UTR 10.0%
!!! AAATTGTTTTATTGATTTTA+AGG - chr1_1:10060999-10061018 Msa0007020:three_prime_UTR 10.0%
!!! AATTGTTTTATTGATTTTAA+GGG - chr1_1:10061000-10061019 Msa0007020:three_prime_UTR 10.0%
!!! ATAATATGATGATATTTTAT+AGG + chr1_1:10065501-10065520 None:intergenic 10.0%
!! GAATTGATGTAAAAAATAAA+TGG - chr1_1:10060841-10060860 Msa0007020:three_prime_UTR 15.0%
!!! AAATCAATAAAACAATTTTC+TGG + chr1_1:10060997-10061016 None:intergenic 15.0%
!!! AAATTTCTTAGATTTTCTAT+AGG - chr1_1:10063738-10063757 Msa0007020:intron 15.0%
!! AATAACATAGTAAATTATGA+TGG + chr1_1:10064427-10064446 None:intergenic 15.0%
!!! CAAGTAAAATATTTAAGTTA+TGG - chr1_1:10064496-10064515 Msa0007020:intron 15.0%
!! ATATGGTATAAGTATTTAAT+CGG + chr1_1:10065224-10065243 None:intergenic 15.0%
!! AGAAAAAGAAAAAAAGAAGA+AGG - chr1_1:10060165-10060184 Msa0007020:three_prime_UTR 20.0%
!!! TTCAATTTTCGTTTTTGATT+TGG - chr1_1:10060466-10060485 Msa0007020:three_prime_UTR 20.0%
!!! TTTAATTGATGTTTTTTTCC+TGG - chr1_1:10060581-10060600 Msa0007020:three_prime_UTR 20.0%
!!! ATGTAAAAAATAAATGGGTT+GGG - chr1_1:10060847-10060866 Msa0007020:three_prime_UTR 20.0%
!! CAATAACAATACTAATTACT+TGG - chr1_1:10060903-10060922 Msa0007020:three_prime_UTR 20.0%
!!! AAATTCTGGAAAAACATTTT+TGG + chr1_1:10060938-10060957 None:intergenic 20.0%
!!! GTTTTTCCAGAATTTTTTTT+TGG - chr1_1:10060943-10060962 Msa0007020:three_prime_UTR 20.0%
!!! AAGGGTTTGATTTTTTTATT+AGG - chr1_1:10061018-10061037 Msa0007020:three_prime_UTR 20.0%
!!! AGGGTTTGATTTTTTTATTA+GGG - chr1_1:10061019-10061038 Msa0007020:three_prime_UTR 20.0%
!!! TTGTTTTGATTTTAAGAGAA+AGG - chr1_1:10061044-10061063 Msa0007020:CDS 20.0%
!! AGAGATAAAGTATGTTATAT+TGG - chr1_1:10061450-10061469 Msa0007020:CDS 20.0%
!! GAGATAAAGTATGTTATATT+GGG - chr1_1:10061451-10061470 Msa0007020:CDS 20.0%
!! TCCTAAATTAAATTGTTTCA+AGG - chr1_1:10061625-10061644 Msa0007020:intron 20.0%
!!! TCCTTGAAACAATTTAATTT+AGG + chr1_1:10061629-10061648 None:intergenic 20.0%
!! ATATAAGCACTTAATTAACA+TGG - chr1_1:10062370-10062389 Msa0007020:intron 20.0%
!! CTACAGGAAAATAAAAAATT+AGG + chr1_1:10062396-10062415 None:intergenic 20.0%
!! AAGTTGAAGTGTAAATTAAA+TGG - chr1_1:10062714-10062733 Msa0007020:CDS 20.0%
!!! GTTTTTAAAGCAATTTTTCA+TGG - chr1_1:10062821-10062840 Msa0007020:intron 20.0%
!!! ACAAACATTCATATTTTAAG+TGG + chr1_1:10063441-10063460 None:intergenic 20.0%
!! TTAAAATATGAATGTTTGTC+CGG - chr1_1:10063442-10063461 Msa0007020:intron 20.0%
!! ATATTTGAATTAATGCCATT+TGG + chr1_1:10064526-10064545 None:intergenic 20.0%
!! CATAGTAATAAAAAATAGCA+TGG + chr1_1:10064579-10064598 None:intergenic 20.0%
!! GCAAATTATTATAAGAGTAA+AGG - chr1_1:10065368-10065387 Msa0007020:five_prime_UTR 20.0%
!! AGTAAAGGAAAGATAATAAT+AGG - chr1_1:10065383-10065402 Msa0007020:five_prime_UTR 20.0%
!! GTAAAGGAAAGATAATAATA+GGG - chr1_1:10065384-10065403 Msa0007020:five_prime_UTR 20.0%
!! ATGATACATGATATTAGAAA+AGG - chr1_1:10065441-10065460 Msa0007020:five_prime_UTR 20.0%
!!! AAACAAAAAAAGGGTATTTG+TGG + chr1_1:10060497-10060516 None:intergenic 25.0%
!!! ATACCCTTTTTTTGTTTGAT+TGG - chr1_1:10060500-10060519 Msa0007020:three_prime_UTR 25.0%
!!! TACCCTTTTTTTGTTTGATT+GGG - chr1_1:10060501-10060520 Msa0007020:three_prime_UTR 25.0%
! AACCCAATCAAACAAAAAAA+GGG + chr1_1:10060506-10060525 None:intergenic 25.0%
! AAACCCAATCAAACAAAAAA+AGG + chr1_1:10060507-10060526 None:intergenic 25.0%
!!! TAATCGATGGTTTTTTTTTG+TGG - chr1_1:10060612-10060631 Msa0007020:three_prime_UTR 25.0%
!!! AATCGATGGTTTTTTTTTGT+GGG - chr1_1:10060613-10060632 Msa0007020:three_prime_UTR 25.0%
! GATGTAAAAAATAAATGGGT+TGG - chr1_1:10060846-10060865 Msa0007020:three_prime_UTR 25.0%
! TCGAAACCAAAAAAAAATTC+TGG + chr1_1:10060952-10060971 None:intergenic 25.0%
!!! GAATTTTTTTTTGGTTTCGA+TGG - chr1_1:10060952-10060971 Msa0007020:three_prime_UTR 25.0%
! TCTTATACTGCAATACTAAA+TGG - chr1_1:10061327-10061346 Msa0007020:intron 25.0%
! CTAGATATATGTAAAACACA+AGG + chr1_1:10061592-10061611 None:intergenic 25.0%
! TCAAGGAATATTGCAAAATA+TGG - chr1_1:10061642-10061661 Msa0007020:intron 25.0%
! CTAGATATAAGTAAAACACA+AGG + chr1_1:10061710-10061729 None:intergenic 25.0%
! TAGAAAACAAAGTTTACAAG+TGG - chr1_1:10061727-10061746 Msa0007020:intron 25.0%
! ATAAAAATGAACAAAAGCAG+AGG + chr1_1:10061852-10061871 None:intergenic 25.0%
! TTCTGTACTAAAATTCAACA+TGG + chr1_1:10062022-10062041 None:intergenic 25.0%
!!! ATATTGGACAGGTTTTTTTT+TGG - chr1_1:10062274-10062293 Msa0007020:intron 25.0%
!!! TATTGGACAGGTTTTTTTTT+GGG - chr1_1:10062275-10062294 Msa0007020:intron 25.0%
!!! TTTTTTTTTGGGAGAGATTA+TGG - chr1_1:10062286-10062305 Msa0007020:intron 25.0%
! TTTAGTATAGGTATTTCAAG+AGG + chr1_1:10062437-10062456 None:intergenic 25.0%
! ATAGTAAGGTCATTTAGTAT+AGG + chr1_1:10062449-10062468 None:intergenic 25.0%
! TATACTAAATGACCTTACTA+TGG - chr1_1:10062448-10062467 Msa0007020:intron 25.0%
! TGAATTAGCAATAACAAACT+TGG - chr1_1:10062505-10062524 Msa0007020:intron 25.0%
! AGTATATGACAATGTAAAAC+AGG - chr1_1:10062639-10062658 Msa0007020:intron 25.0%
! CTTCAACTTAAATGCATATT+TGG + chr1_1:10062703-10062722 None:intergenic 25.0%
! AGTGTAAATTAAATGGTTCT+TGG - chr1_1:10062721-10062740 Msa0007020:CDS 25.0%
! CATAATATAGTCTTCAATCT+TGG + chr1_1:10062882-10062901 None:intergenic 25.0%
!! TTGTTTCTTCTTCACTATAT+AGG - chr1_1:10062965-10062984 Msa0007020:intron 25.0%
!!! CTAAACCATTTGTTCTTTTT+TGG - chr1_1:10063234-10063253 Msa0007020:intron 25.0%
! AAATGCCAAAAAAGAACAAA+TGG + chr1_1:10063242-10063261 None:intergenic 25.0%
!!! ATTTGTTCTTTTTTGGCATT+TGG - chr1_1:10063241-10063260 Msa0007020:intron 25.0%
! CTGTAATAATATTGATCCTA+TGG + chr1_1:10063308-10063327 None:intergenic 25.0%
! GTTTCAAAAAAACCTAATGT+CGG - chr1_1:10063678-10063697 Msa0007020:intron 25.0%
! TCTAAGAAATTTCTTTACCA+TGG + chr1_1:10063730-10063749 None:intergenic 25.0%
! ACATAATGAAACAAATCAGA+AGG + chr1_1:10063829-10063848 None:intergenic 25.0%
! TTTGTTTCATTATGTTCTTC+AGG - chr1_1:10063834-10063853 Msa0007020:intron 25.0%
!!! ATAGCTAAGCCATTTTTTAA+AGG - chr1_1:10064005-10064024 Msa0007020:five_prime_UTR 25.0%
!!! TGATATCCTTTGTTTTCTTT+AGG + chr1_1:10064267-10064286 None:intergenic 25.0%
! ATGCAAATTTACTTCAATAC+TGG + chr1_1:10064474-10064493 None:intergenic 25.0%
! TTAAGTTATGGAAAACCAAA+TGG - chr1_1:10064508-10064527 Msa0007020:intron 25.0%
! GTTATCTTTAAACTTATTCC+AGG - chr1_1:10064615-10064634 Msa0007020:intron 25.0%
! AATCAACTATCTTCTGTTAT+AGG + chr1_1:10064731-10064750 None:intergenic 25.0%
! AACAGAAGATAGTTGATTAT+TGG - chr1_1:10064733-10064752 Msa0007020:intron 25.0%
!!! ATCTTTTTCGAGAAATTAGA+AGG - chr1_1:10064825-10064844 Msa0007020:intron 25.0%
! ATCACAAACGAAATATTTGA+TGG - chr1_1:10065269-10065288 Msa0007020:intron 25.0%
! GACAAAATACAATTACTATG+AGG - chr1_1:10065341-10065360 Msa0007020:five_prime_UTR 25.0%
! TATATGAGAAACTATGAACT+TGG - chr1_1:10065529-10065548 Msa0007020:five_prime_UTR 25.0%
AAAGAAGAAGGAAAACAGAA+CGG - chr1_1:10060177-10060196 Msa0007020:three_prime_UTR 30.0%
AAGCTTCAATTACTCAACAA+TGG + chr1_1:10060379-10060398 None:intergenic 30.0%
ACAGAAGTTAAAGAGAATCA+AGG - chr1_1:10060430-10060449 Msa0007020:three_prime_UTR 30.0%
CAAGTCTACATTCTGTTTAT+AGG - chr1_1:10061195-10061214 Msa0007020:intron 30.0%
ATGCTCCATGTATTAAACTT+TGG - chr1_1:10061235-10061254 Msa0007020:intron 30.0%
AGACACCAAAGTTTAATACA+TGG + chr1_1:10061243-10061262 None:intergenic 30.0%
AACCTTATGACATCTATACA+TGG + chr1_1:10061368-10061387 None:intergenic 30.0%
AACCATGTATAGATGTCATA+AGG - chr1_1:10061403-10061422 Msa0007020:intron 30.0%
TTCCTTATGACATCTATACA+TGG + chr1_1:10061408-10061427 None:intergenic 30.0%
TGTATAGATGTCATAAGGAA+AGG - chr1_1:10061408-10061427 Msa0007020:intron 30.0%
GTATAGATGTCATAAGGAAA+GGG - chr1_1:10061409-10061428 Msa0007020:intron 30.0%
! TGTTGTTTGTAATGTGAAGA+TGG - chr1_1:10062061-10062080 Msa0007020:intron 30.0%
CTATTGATACTCAACATGTT+GGG - chr1_1:10062247-10062266 Msa0007020:intron 30.0%
TATTGATACTCAACATGTTG+GGG - chr1_1:10062248-10062267 Msa0007020:intron 30.0%
!! TTTATTTTCCTGTAGCTTTG+TGG - chr1_1:10062401-10062420 Msa0007020:CDS 30.0%
! AAATGACCTTACTATGGTTT+TGG - chr1_1:10062454-10062473 Msa0007020:intron 30.0%
! AATGACCTTACTATGGTTTT+GGG - chr1_1:10062455-10062474 Msa0007020:intron 30.0%
TGTAAAACAGGTTTGAATTC+TGG - chr1_1:10062651-10062670 Msa0007020:intron 30.0%
AAGACTGAGAGTTTATTTAG+TGG - chr1_1:10062746-10062765 Msa0007020:CDS 30.0%
AGACTGAGAGTTTATTTAGT+GGG - chr1_1:10062747-10062766 Msa0007020:CDS 30.0%
GATTCTTAATTAGCTAGCAA+TGG - chr1_1:10062769-10062788 Msa0007020:intron 30.0%
! AAGCAATTTTTCATGGCTAA+AGG - chr1_1:10062828-10062847 Msa0007020:intron 30.0%
! TGTAGAATTATGCTGTGTTT+TGG - chr1_1:10062925-10062944 Msa0007020:intron 30.0%
AGTGAAGAAGAAACAATCAA+TGG + chr1_1:10062961-10062980 None:intergenic 30.0%
ACTATATAGGCAACAACATT+TGG - chr1_1:10062978-10062997 Msa0007020:intron 30.0%
ATTTGGTTAACTATAACGTC+AGG - chr1_1:10063258-10063277 Msa0007020:intron 30.0%
TTTGGTTAACTATAACGTCA+GGG - chr1_1:10063259-10063278 Msa0007020:intron 30.0%
AGGATCAATATTATTACAGC+AGG - chr1_1:10063309-10063328 Msa0007020:intron 30.0%
GTTGTACTTGACAAATTAGA+AGG + chr1_1:10063521-10063540 None:intergenic 30.0%
TAGAGAAATTACACATTTCC+TGG - chr1_1:10063645-10063664 Msa0007020:intron 30.0%
TATGTCCATCATCTAATGTA+TGG - chr1_1:10063784-10063803 Msa0007020:intron 30.0%
ATGTCCATCATCTAATGTAT+GGG - chr1_1:10063785-10063804 Msa0007020:intron 30.0%
TAAATTTGCAACTGTATCAG+AGG + chr1_1:10063895-10063914 None:intergenic 30.0%
AAAATGGCTTAGCTATGAAA+AGG + chr1_1:10064001-10064020 None:intergenic 30.0%
! CACAGTTTGCCTTTAAAAAA+TGG + chr1_1:10064017-10064036 None:intergenic 30.0%
ATCTTAACACATTACAGACA+AGG + chr1_1:10064118-10064137 None:intergenic 30.0%
! ACTGACTTTGATCTGAATTT+GGG - chr1_1:10064219-10064238 Msa0007020:five_prime_UTR 30.0%
!! TTTTCTTTAGGTTCATGTAC+TGG + chr1_1:10064255-10064274 None:intergenic 30.0%
CATGAACCTAAAGAAAACAA+AGG - chr1_1:10064258-10064277 Msa0007020:five_prime_UTR 30.0%
! TTCAAACCTGAGTTTGTTTA+TGG - chr1_1:10064701-10064720 Msa0007020:intron 30.0%
TACATAGCAGAAATTCTTTG+AGG - chr1_1:10064780-10064799 Msa0007020:intron 30.0%
TCTGAAGAAGTTAAAATCTC+TGG + chr1_1:10064931-10064950 None:intergenic 30.0%
! TTTAACTTCTTCAGATTCAG+TGG - chr1_1:10064936-10064955 Msa0007020:intron 30.0%
!! GAAATATTTGATGGTGCTAA+AGG - chr1_1:10065278-10065297 Msa0007020:intron 30.0%
TAATAATAGGGTTTCCAGAT+AGG - chr1_1:10065396-10065415 Msa0007020:five_prime_UTR 30.0%
ATCATGTATCTCCTTATGAT+AGG + chr1_1:10065426-10065445 None:intergenic 30.0%
ACAAATAGTCTGCAATGAAA+AGG - chr1_1:10065475-10065494 Msa0007020:five_prime_UTR 30.0%
CAAGACTTTCAATATATGCA+TGG - chr1_1:10065618-10065637 Msa0007020:five_prime_UTR 30.0%
!! ATGGAGGTTTTGTGAGTTAT+GGG + chr1_1:10060360-10060379 None:intergenic 35.0%
!! AATGGAGGTTTTGTGAGTTA+TGG + chr1_1:10060361-10060380 None:intergenic 35.0%
CTTCAATTACTCAACAATGG+AGG + chr1_1:10060376-10060395 None:intergenic 35.0%
TAAAGAGAATCAAGGTGAGT+TGG - chr1_1:10060438-10060457 Msa0007020:three_prime_UTR 35.0%
AAAGAGAATCAAGGTGAGTT+GGG - chr1_1:10060439-10060458 Msa0007020:three_prime_UTR 35.0%
! CCATCGATTAAGAAAAATCC+AGG + chr1_1:10060602-10060621 None:intergenic 35.0%
! CCTGGATTTTTCTTAATCGA+TGG - chr1_1:10060599-10060618 Msa0007020:three_prime_UTR 35.0%
!!! GGTTTTTTTTTGTGGGTTTC+TGG - chr1_1:10060620-10060639 Msa0007020:three_prime_UTR 35.0%
AAAGAAGATTGATGCAGATG+AGG - chr1_1:10060656-10060675 Msa0007020:intron 35.0%
ATGGAAAGAAGAAGGAAGAA+GGG - chr1_1:10060694-10060713 Msa0007020:intron 35.0%
!! AAAAATAAATGGGTTGGGAG+TGG - chr1_1:10060852-10060871 Msa0007020:three_prime_UTR 35.0%
!!! TTTTGGTTTCGATGGTGATT+AGG - chr1_1:10060960-10060979 Msa0007020:three_prime_UTR 35.0%
! TTTGGTTTCGATGGTGATTA+GGG - chr1_1:10060961-10060980 Msa0007020:three_prime_UTR 35.0%
!! TGAGTTGTGTCACTTTGTTT+AGG - chr1_1:10061269-10061288 Msa0007020:intron 35.0%
!! GAGTTGTGTCACTTTGTTTA+GGG - chr1_1:10061270-10061289 Msa0007020:intron 35.0%
GACCATGTATAGATGTCATA+AGG - chr1_1:10061363-10061382 Msa0007020:intron 35.0%
TATATTGGGAGAGAAAGCTA+AGG - chr1_1:10061465-10061484 Msa0007020:CDS 35.0%
GAATCCTCTGAATTATACTC+AGG - chr1_1:10061546-10061565 Msa0007020:CDS 35.0%
CTAACCTGAGTATAATTCAG+AGG + chr1_1:10061553-10061572 None:intergenic 35.0%
AATATGGACATTGCTCTTGA+TGG - chr1_1:10061658-10061677 Msa0007020:intron 35.0%
TTATGATACCTGGATTCCAT+AGG + chr1_1:10061826-10061845 None:intergenic 35.0%
! TCATTTTCATGCAGTAGCTT+TGG - chr1_1:10061901-10061920 Msa0007020:intron 35.0%
GATTCTACTGTTTATGAGCT+TGG - chr1_1:10061993-10062012 Msa0007020:intron 35.0%
TTGTAATGTGAAGATGGAAC+AGG - chr1_1:10062067-10062086 Msa0007020:intron 35.0%
! TCAATTTTCAACACCCTTTG+TGG - chr1_1:10062134-10062153 Msa0007020:intron 35.0%
ATTACAACCTGTTCCACAAA+GGG + chr1_1:10062150-10062169 None:intergenic 35.0%
TATTACAACCTGTTCCACAA+AGG + chr1_1:10062151-10062170 None:intergenic 35.0%
GTGGAACAGGTTGTAATAAA+TGG - chr1_1:10062153-10062172 Msa0007020:intron 35.0%
TGTAATAAATGGAGCAGCAA+AGG - chr1_1:10062164-10062183 Msa0007020:intron 35.0%
GCTATTGATACTCAACATGT+TGG - chr1_1:10062246-10062265 Msa0007020:intron 35.0%
CATTGTCATATACTGCAGAA+GGG + chr1_1:10062633-10062652 None:intergenic 35.0%
ACATTGTCATATACTGCAGA+AGG + chr1_1:10062634-10062653 None:intergenic 35.0%
TCAACATACTTATATGCAGC+TGG - chr1_1:10062677-10062696 Msa0007020:intron 35.0%
AGGAAACAACTTCAAGTGAT+AGG - chr1_1:10062848-10062867 Msa0007020:intron 35.0%
ACTTCAAGTGATAGGACAAT+AGG - chr1_1:10062856-10062875 Msa0007020:intron 35.0%
! TCTTACATTTGCATTAGCCT+TGG + chr1_1:10063383-10063402 None:intergenic 35.0%
CAAACCAAATTGTTATCGGT+AGG + chr1_1:10063704-10063723 None:intergenic 35.0%
GCAGCAAACCAAATTGTTAT+CGG + chr1_1:10063708-10063727 None:intergenic 35.0%
AGATCCCATACATTAGATGA+TGG + chr1_1:10063792-10063811 None:intergenic 35.0%
GGGAAAGACAACTCAAAAAA+TGG + chr1_1:10063925-10063944 None:intergenic 35.0%
ATATTCCACTCCTTGATCAA+CGG + chr1_1:10063946-10063965 None:intergenic 35.0%
!! GCTCTAAAGTTCTTGTCATT+TGG - chr1_1:10064036-10064055 Msa0007020:intron 35.0%
! AAAGTTCTTGTCATTTGGTG+AGG - chr1_1:10064041-10064060 Msa0007020:intron 35.0%
! AAGTTCTTGTCATTTGGTGA+GGG - chr1_1:10064042-10064061 Msa0007020:intron 35.0%
ACATTACAGACAAGGTAAGA+CGG + chr1_1:10064110-10064129 None:intergenic 35.0%
CCAGAAAGAGAGAAACATAT+TGG + chr1_1:10064146-10064165 None:intergenic 35.0%
CCAATATGTTTCTCTCTTTC+TGG - chr1_1:10064143-10064162 Msa0007020:intron 35.0%
! TTTCTCTCTTTCTGGAAATC+AGG - chr1_1:10064151-10064170 Msa0007020:intron 35.0%
! TTCTCTCTTTCTGGAAATCA+GGG - chr1_1:10064152-10064171 Msa0007020:intron 35.0%
!! AAAGCAGCTCTAAAATGCAA+GGG - chr1_1:10064183-10064202 Msa0007020:intron 35.0%
! GACTGACTTTGATCTGAATT+TGG - chr1_1:10064218-10064237 Msa0007020:five_prime_UTR 35.0%
TATACCTTTAAACTCCTTCG+AGG + chr1_1:10064322-10064341 None:intergenic 35.0%
! CTGGAAGAAATTGCTTTGAA+AGG + chr1_1:10064455-10064474 None:intergenic 35.0%
GCATGGAAATCTTATGACAT+AGG + chr1_1:10064562-10064581 None:intergenic 35.0%
TTATTCCAGGTTTCATCCAT+GGG - chr1_1:10064628-10064647 Msa0007020:intron 35.0%
GCAGATGATGATTACATATC+AGG - chr1_1:10065099-10065118 Msa0007020:five_prime_UTR 35.0%
! TGTATTTTGTCCCATGCATA+GGG + chr1_1:10065332-10065351 None:intergenic 35.0%
! TTGTATTTTGTCCCATGCAT+AGG + chr1_1:10065333-10065352 None:intergenic 35.0%
TTATGATAGGCAATCCTATC+TGG + chr1_1:10065413-10065432 None:intergenic 35.0%
AGATAGGATTGCCTATCATA+AGG - chr1_1:10065412-10065431 Msa0007020:five_prime_UTR 35.0%
TGATATTAGAAAAGGATCCC+TGG - chr1_1:10065449-10065468 Msa0007020:five_prime_UTR 35.0%
AAGAAGAGAGGTGAGAAGAA+CGG - chr1_1:10060206-10060225 Msa0007020:three_prime_UTR 40.0%
TGAGAAGAACGGGAAAAGAA+GGG - chr1_1:10060217-10060236 Msa0007020:three_prime_UTR 40.0%
GAGATGAGAAGAAGAGGAAA+CGG - chr1_1:10060249-10060268 Msa0007020:three_prime_UTR 40.0%
AGATGAGAAGAAGAGGAAAC+GGG - chr1_1:10060250-10060269 Msa0007020:three_prime_UTR 40.0%
! ATGCAAGTTGAGGAAGAAGA+AGG + chr1_1:10060326-10060345 None:intergenic 40.0%
TTTGTGAGTTATGGGTGAGA+GGG + chr1_1:10060352-10060371 None:intergenic 40.0%
! TTTTGTGAGTTATGGGTGAG+AGG + chr1_1:10060353-10060372 None:intergenic 40.0%
GAGGAAAGAATTGATGCAGA+TGG - chr1_1:10060675-10060694 Msa0007020:intron 40.0%
TGATGCAGATGGAAAGAAGA+AGG - chr1_1:10060686-10060705 Msa0007020:intron 40.0%
GATGGAAAGAAGAAGGAAGA+AGG - chr1_1:10060693-10060712 Msa0007020:intron 40.0%
GAGACATTACCTCAAACACT+TGG + chr1_1:10060884-10060903 None:intergenic 40.0%
TAAACTCACGACAGGTAATG+AGG - chr1_1:10061788-10061807 Msa0007020:intron 40.0%
TTTGATTCCCATAAAGCGTG+TGG - chr1_1:10061965-10061984 Msa0007020:intron 40.0%
AATAAATGGAGCAGCAAAGG+AGG - chr1_1:10062167-10062186 Msa0007020:intron 40.0%
AGCAGTATTAGCTGTGACAA+AGG - chr1_1:10062200-10062219 Msa0007020:intron 40.0%
CAACATGTTGGGGAAGATAT+TGG - chr1_1:10062258-10062277 Msa0007020:intron 40.0%
TAGAGCCCAAAACCATAGTA+AGG + chr1_1:10062463-10062482 None:intergenic 40.0%
! ATTGATCCTATGGAAAGCGT+TGG + chr1_1:10063298-10063317 None:intergenic 40.0%
ATTCCACAATTTCGACGTTG+CGG + chr1_1:10063360-10063379 None:intergenic 40.0%
ACACCTGATAAGATCACATC+CGG + chr1_1:10063464-10063483 None:intergenic 40.0%
! TTTGAAACAGTGCACATACC+AGG + chr1_1:10063666-10063685 None:intergenic 40.0%
!! AACAATTTGGTTTGCTGCCA+TGG - chr1_1:10063710-10063729 Msa0007020:intron 40.0%
TATTCCACTCCTTGATCAAC+GGG + chr1_1:10063945-10063964 None:intergenic 40.0%
ACTACAACACATGCACAATG+GGG + chr1_1:10064072-10064091 None:intergenic 40.0%
GACTACAACACATGCACAAT+GGG + chr1_1:10064073-10064092 None:intergenic 40.0%
AGACTACAACACATGCACAA+TGG + chr1_1:10064074-10064093 None:intergenic 40.0%
!! CAAAGCAGCTCTAAAATGCA+AGG - chr1_1:10064182-10064201 Msa0007020:intron 40.0%
! TCTAAAATGCAAGGGAAGAG+AGG - chr1_1:10064191-10064210 Msa0007020:intron 40.0%
CTTTGATCTGAATTTGGGCA+TGG - chr1_1:10064224-10064243 Msa0007020:five_prime_UTR 40.0%
CTTATTCCAGGTTTCATCCA+TGG - chr1_1:10064627-10064646 Msa0007020:intron 40.0%
TAGAAGGATTCATCACGTGT+AGG - chr1_1:10064841-10064860 Msa0007020:intron 40.0%
GGTGAGGTCTAAATCTTTCA+AGG + chr1_1:10064892-10064911 None:intergenic 40.0%
CAGATTCAGTGGAATCTGTA+AGG - chr1_1:10064947-10064966 Msa0007020:intron 40.0%
TGTTCTATTGCAACCTGCTT+AGG - chr1_1:10065057-10065076 Msa0007020:five_prime_UTR 40.0%
ATTAGAGAGCTAACCTAAGC+AGG + chr1_1:10065073-10065092 None:intergenic 40.0%
TGCAGACTATTTGTAAGCCA+GGG + chr1_1:10065469-10065488 None:intergenic 40.0%
TTGCAGACTATTTGTAAGCC+AGG + chr1_1:10065470-10065489 None:intergenic 40.0%
AGAAGAGAGGTGAGAAGAAC+GGG - chr1_1:10060207-10060226 Msa0007020:three_prime_UTR 45.0%
GTGAGAAGAACGGGAAAAGA+AGG - chr1_1:10060216-10060235 Msa0007020:three_prime_UTR 45.0%
AGAAGAAGAGGAAACGGGTA+CGG - chr1_1:10060255-10060274 Msa0007020:three_prime_UTR 45.0%
! CAAGTTGAGGAAGAAGAAGG+AGG + chr1_1:10060323-10060342 None:intergenic 45.0%
GGGAATGCATTGTTCAAAGC+TGG - chr1_1:10060714-10060733 Msa0007020:intron 45.0%
GTTTCGATGGTGATTAGGGT+TGG - chr1_1:10060965-10060984 Msa0007020:three_prime_UTR 45.0%
GTCATCGATAAACTCACGAC+AGG - chr1_1:10061780-10061799 Msa0007020:intron 45.0%
GCAGAGGAGTTTATGATACC+TGG + chr1_1:10061836-10061855 None:intergenic 45.0%
TCCTGATCCACACGCTTTAT+GGG + chr1_1:10061975-10061994 None:intergenic 45.0%
ATCCTGATCCACACGCTTTA+TGG + chr1_1:10061976-10061995 None:intergenic 45.0%
TTCAACACCCTTTGTGGAAC+AGG - chr1_1:10062140-10062159 Msa0007020:intron 45.0%
TCCAGAAACTTCCATTCCTC+TGG + chr1_1:10062226-10062245 None:intergenic 45.0%
TGTTGGGGAAGATATTGGAC+AGG - chr1_1:10062263-10062282 Msa0007020:intron 45.0%
!! TTTCCTGTAGCTTTGTGGCA+TGG - chr1_1:10062406-10062425 Msa0007020:CDS 45.0%
!!! GGTTTTGGGCTCTATATCTC+AGG - chr1_1:10062469-10062488 Msa0007020:intron 45.0%
GAATTGCGATTTGCAGTCCA+AGG - chr1_1:10062579-10062598 Msa0007020:intron 45.0%
ACCGTATCCAATTTGATCCG+CGG + chr1_1:10063026-10063045 None:intergenic 45.0%
ATTGTCTGCATTCTGCGAGA+AGG - chr1_1:10063052-10063071 Msa0007020:intron 45.0%
! ACTATAACGTCAGGGTGTCT+TGG - chr1_1:10063267-10063286 Msa0007020:intron 45.0%
CAATTTCGACGTTGCGGTAA+TGG + chr1_1:10063354-10063373 None:intergenic 45.0%
TTACCGCAACGTCGAAATTG+TGG - chr1_1:10063354-10063373 Msa0007020:intron 45.0%
CGTCGAAATTGTGGAATCCA+AGG - chr1_1:10063363-10063382 Msa0007020:intron 45.0%
TGTCCGGATGTGATCTTATC+AGG - chr1_1:10063458-10063477 Msa0007020:intron 45.0%
TCGGCCTACCGATAACAATT+TGG - chr1_1:10063697-10063716 Msa0007020:intron 45.0%
GTTGTCTTTCCCGTTGATCA+AGG - chr1_1:10063933-10063952 Msa0007020:intron 45.0%
TTAAACTCCTTCGAGGATGC+AGG + chr1_1:10064315-10064334 None:intergenic 45.0%
GCATCCTCGAAGGAGTTTAA+AGG - chr1_1:10064315-10064334 Msa0007020:five_prime_UTR 45.0%
TTCCTTGAGTCTCTCTTGTG+AGG + chr1_1:10064680-10064699 None:intergenic 45.0%
GGCAAGCCATAAACAAACTC+AGG + chr1_1:10064710-10064729 None:intergenic 45.0%
!! TGTAGGAGCATTCCCTCATA+AGG - chr1_1:10064858-10064877 Msa0007020:intron 45.0%
! AAGGATGTGCAGCCTTATGA+GGG + chr1_1:10064873-10064892 None:intergenic 45.0%
TCTGGTGTATGCAGCAAGAA+GGG + chr1_1:10064913-10064932 None:intergenic 45.0%
ATAGCCTCTTCACTTAGGCT+TGG + chr1_1:10064992-10065011 None:intergenic 45.0%
CTTGCATAGCCTCTTCACTT+AGG + chr1_1:10064997-10065016 None:intergenic 45.0%
CACTGATACAAGAGCCTTGA+TGG - chr1_1:10065133-10065152 Msa0007020:intron 45.0%
!! TCCAGCTTTGAACTCCATCA+AGG + chr1_1:10065150-10065169 None:intergenic 45.0%
TGGAGTTCAAAGCTGGAGTA+AGG - chr1_1:10065153-10065172 Msa0007020:intron 45.0%
GAGCTGTTTGCAAGGCTATA+TGG + chr1_1:10065241-10065260 None:intergenic 45.0%
CTGTCATTGAGCTGTTTGCA+AGG + chr1_1:10065249-10065268 None:intergenic 45.0%
AATATGCTCCCCCAACTGAT+TGG - chr1_1:10065306-10065325 Msa0007020:intron 45.0%
ATGCATAGGGCCAATCAGTT+GGG + chr1_1:10065319-10065338 None:intergenic 45.0%
! AACTGATTGGCCCTATGCAT+GGG - chr1_1:10065319-10065338 Msa0007020:intron 45.0%
!!! TTTTACTAATATATTAAATT+TGG + chr1_1:10064367-10064386 None:intergenic 5.0%
GAACGGACAGAGAAGAAGAG+AGG - chr1_1:10060194-10060213 Msa0007020:three_prime_UTR 50.0%
GAAGAACGGGAAAAGAAGGG+AGG - chr1_1:10060220-10060239 Msa0007020:three_prime_UTR 50.0%
TCGAGGGAGATGAGAAGAAG+AGG - chr1_1:10060243-10060262 Msa0007020:three_prime_UTR 50.0%
GAAGAAGAGGAAACGGGTAC+GGG - chr1_1:10060256-10060275 Msa0007020:three_prime_UTR 50.0%
AAACGGGTACGGGAGAAAGA+AGG - chr1_1:10060266-10060285 Msa0007020:three_prime_UTR 50.0%
AACGGGTACGGGAGAAAGAA+GGG - chr1_1:10060267-10060286 Msa0007020:three_prime_UTR 50.0%
! GAGAGGGAGTATGCAAGTTG+AGG + chr1_1:10060336-10060355 None:intergenic 50.0%
TGGCACTCACCAAGTGTTTG+AGG - chr1_1:10060872-10060891 Msa0007020:three_prime_UTR 50.0%
TCCCATAAAGCGTGTGGATC+AGG - chr1_1:10061971-10061990 Msa0007020:intron 50.0%
AATGGAGCAGCAAAGGAGGT+AGG - chr1_1:10062171-10062190 Msa0007020:intron 50.0%
TTAGCTGTGACAAAGGCCAG+AGG - chr1_1:10062207-10062226 Msa0007020:intron 50.0%
TGTGACAAAGGCCAGAGGAA+TGG - chr1_1:10062212-10062231 Msa0007020:intron 50.0%
GCCAGAGGAATGGAAGTTTC+TGG - chr1_1:10062222-10062241 Msa0007020:intron 50.0%
CTTCCATGCCACAAAGCTAC+AGG + chr1_1:10062412-10062431 None:intergenic 50.0%
GAAATCGACTACAACCGCTG+TGG + chr1_1:10062605-10062624 None:intergenic 50.0%
!! AAAGCGTTGTGTACATGCCG+CGG - chr1_1:10063006-10063025 Msa0007020:intron 50.0%
GTACATGCCGCGGATCAAAT+TGG - chr1_1:10063016-10063035 Msa0007020:intron 50.0%
GCCGCGGATCAAATTGGATA+CGG - chr1_1:10063022-10063041 Msa0007020:intron 50.0%
GTTGCTCCAACGCTTTCCAT+AGG - chr1_1:10063289-10063308 Msa0007020:intron 50.0%
GTTATCGGTAGGCCGACATT+AGG + chr1_1:10063693-10063712 None:intergenic 50.0%
CTTTCCCGTTGATCAAGGAG+TGG - chr1_1:10063938-10063957 Msa0007020:intron 50.0%
CAACACATGCACAATGGGGT+TGG + chr1_1:10064068-10064087 None:intergenic 50.0%
CTTACAACCTGCATCCTCGA+AGG - chr1_1:10064305-10064324 Msa0007020:five_prime_UTR 50.0%
AAGAGCCCATGGATGAAACC+TGG + chr1_1:10064636-10064655 None:intergenic 50.0%
TTCATCCATGGGCTCTTCAC+AGG - chr1_1:10064639-10064658 Msa0007020:intron 50.0%
AGCCTCACAAGAGAGACTCA+AGG - chr1_1:10064675-10064694 Msa0007020:intron 50.0%
! CAAGGATGTGCAGCCTTATG+AGG + chr1_1:10064874-10064893 None:intergenic 50.0%
TGTATGCAGCAAGAAGGGTG+AGG + chr1_1:10064908-10064927 None:intergenic 50.0%
CTCTGGTGTATGCAGCAAGA+AGG + chr1_1:10064914-10064933 None:intergenic 50.0%
TGCTCCAAGCCTAAGTGAAG+AGG - chr1_1:10064985-10065004 Msa0007020:intron 50.0%
GCCTTGATGGAGTTCAAAGC+TGG - chr1_1:10065146-10065165 Msa0007020:intron 50.0%
TGCATAGGGCCAATCAGTTG+GGG + chr1_1:10065318-10065337 None:intergenic 50.0%
CATGCATAGGGCCAATCAGT+TGG + chr1_1:10065320-10065339 None:intergenic 50.0%
! CAACTGATTGGCCCTATGCA+TGG - chr1_1:10065318-10065337 Msa0007020:intron 50.0%
GGGAAAAGAAGGGAGGTCGA+GGG - chr1_1:10060227-10060246 Msa0007020:three_prime_UTR 55.0%
ACGGGTACGGGAGAAAGAAG+GGG - chr1_1:10060268-10060287 Msa0007020:three_prime_UTR 55.0%
GAGGACTTCTGAGTCGCCTA+TGG - chr1_1:10061807-10061826 Msa0007020:intron 55.0%
CTGAGTCGCCTATGGAATCC+AGG - chr1_1:10061815-10061834 Msa0007020:intron 55.0%
TTTGCAGTCCAAGGCCACAG+CGG - chr1_1:10062588-10062607 Msa0007020:intron 55.0%
ATTCTGCGAGAAGGCCAGCA+TGG - chr1_1:10063061-10063080 Msa0007020:intron 55.0%
AAGGCCAGCATGGTGAGCAA+GGG - chr1_1:10063071-10063090 Msa0007020:intron 55.0%
CACTTCCTGTGAAGAGCCCA+TGG + chr1_1:10064647-10064666 None:intergenic 55.0%
CATGGGCTCTTCACAGGAAG+TGG - chr1_1:10064645-10064664 Msa0007020:intron 55.0%
GCATAGGGCCAATCAGTTGG+GGG + chr1_1:10065317-10065336 None:intergenic 55.0%
CGGGAAAAGAAGGGAGGTCG+AGG - chr1_1:10060226-10060245 Msa0007020:three_prime_UTR 60.0%
CGGGTACGGGAGAAAGAAGG+GGG - chr1_1:10060269-10060288 Msa0007020:three_prime_UTR 60.0%
GGGTACGGGAGAAAGAAGGG+GGG - chr1_1:10060270-10060289 Msa0007020:three_prime_UTR 60.0%
GACTACAACCGCTGTGGCCT+TGG + chr1_1:10062599-10062618 None:intergenic 60.0%
GAAGGCCAGCATGGTGAGCA+AGG - chr1_1:10063070-10063089 Msa0007020:intron 60.0%
AGGCCAGCATGGTGAGCAAG+GGG - chr1_1:10063072-10063091 Msa0007020:intron 60.0%
TCACCCCTTGCTCACCATGC+TGG + chr1_1:10063078-10063097 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 10060133 10065641 10060133 ID=Msa0007020;Name=Msa0007020
chr1_1 mRNA 10060133 10065641 10060133 ID=Msa0007020-mRNA-1;Parent=Msa0007020;Name=Msa0007020-mRNA-1;_AED=0.22;_eAED=0.22;_QI=683|0.6|0.63|1|0.4|0.45|11|834|169
chr1_1 exon 10060133 10060671 10060133 ID=Msa0007020-mRNA-1:exon:3665;Parent=Msa0007020-mRNA-1
chr1_1 exon 10060745 10061137 10060745 ID=Msa0007020-mRNA-1:exon:3664;Parent=Msa0007020-mRNA-1
chr1_1 exon 10061438 10061601 10061438 ID=Msa0007020-mRNA-1:exon:3663;Parent=Msa0007020-mRNA-1
chr1_1 exon 10062378 10062446 10062378 ID=Msa0007020-mRNA-1:exon:3662;Parent=Msa0007020-mRNA-1
chr1_1 exon 10062681 10062787 10062681 ID=Msa0007020-mRNA-1:exon:3661;Parent=Msa0007020-mRNA-1
chr1_1 exon 10063114 10063179 10063114 ID=Msa0007020-mRNA-1:exon:3660;Parent=Msa0007020-mRNA-1
chr1_1 exon 10063538 10063612 10063538 ID=Msa0007020-mRNA-1:exon:3659;Parent=Msa0007020-mRNA-1
chr1_1 exon 10063973 10064044 10063973 ID=Msa0007020-mRNA-1:exon:3658;Parent=Msa0007020-mRNA-1
chr1_1 exon 10064207 10064349 10064207 ID=Msa0007020-mRNA-1:exon:3657;Parent=Msa0007020-mRNA-1
chr1_1 exon 10065039 10065118 10065039 ID=Msa0007020-mRNA-1:exon:3656;Parent=Msa0007020-mRNA-1
chr1_1 exon 10065323 10065641 10065323 ID=Msa0007020-mRNA-1:exon:3655;Parent=Msa0007020-mRNA-1
chr1_1 five_prime_UTR 10065323 10065641 10065323 ID=Msa0007020-mRNA-1:five_prime_utr;Parent=Msa0007020-mRNA-1
chr1_1 five_prime_UTR 10065039 10065118 10065039 ID=Msa0007020-mRNA-1:five_prime_utr;Parent=Msa0007020-mRNA-1
chr1_1 five_prime_UTR 10064207 10064349 10064207 ID=Msa0007020-mRNA-1:five_prime_utr;Parent=Msa0007020-mRNA-1
chr1_1 five_prime_UTR 10063973 10064044 10063973 ID=Msa0007020-mRNA-1:five_prime_utr;Parent=Msa0007020-mRNA-1
chr1_1 five_prime_UTR 10063544 10063612 10063544 ID=Msa0007020-mRNA-1:five_prime_utr;Parent=Msa0007020-mRNA-1
chr1_1 CDS 10063538 10063543 10063538 ID=Msa0007020-mRNA-1:cds;Parent=Msa0007020-mRNA-1
chr1_1 CDS 10063114 10063179 10063114 ID=Msa0007020-mRNA-1:cds;Parent=Msa0007020-mRNA-1
chr1_1 CDS 10062681 10062787 10062681 ID=Msa0007020-mRNA-1:cds;Parent=Msa0007020-mRNA-1
chr1_1 CDS 10062378 10062446 10062378 ID=Msa0007020-mRNA-1:cds;Parent=Msa0007020-mRNA-1
chr1_1 CDS 10061438 10061601 10061438 ID=Msa0007020-mRNA-1:cds;Parent=Msa0007020-mRNA-1
chr1_1 CDS 10061040 10061137 10061040 ID=Msa0007020-mRNA-1:cds;Parent=Msa0007020-mRNA-1
chr1_1 three_prime_UTR 10060745 10061039 10060745 ID=Msa0007020-mRNA-1:three_prime_utr;Parent=Msa0007020-mRNA-1
chr1_1 three_prime_UTR 10060133 10060671 10060133 ID=Msa0007020-mRNA-1:three_prime_utr;Parent=Msa0007020-mRNA-1
Gene Sequence

>Msa0007020

ATGGAATCCAAGGCCACAGCGGTTGTAGTCGATTTCACTGACCCTTCTGCAGTATATGACAATGTAAAACAGGCAACAACATTTGGCATGAAAAGCGTTGTGTACATGCCGCGGATCAAATTGGATACGGTTGCAGCATTGTCTGCATTCTGCGAGAAGGCCAGCATGGTGAGCAAGGGCAGGCTGCAATTTCAGCTTCTTTCCATTACCGCAACGTCGAAATTGTGGAATCCAAGGCTAATGCAAATGGCTTATGACAAAGCAGCTCTAAAATGCAAGGGAAGAGAGGCAGTGACTGACTTTGATCTGAATTTGGGCATGGAGACTCCAGTACATGAACCTAAAGAAAACAAAGGATATCATCAATTTCACTGTTTCTTCTTACAACCTGCATCCTCGAAGGAGTTTAAAGGTTTCATCCATGGGCTCTTCACAGGAAGTGGAGATCAAAGCCTCACAAGAGAGACTCAAGGAATTTCAAACCTGAGTTTGTTTATGGCTTGCCTATAA
Protein sequence

>Msa0007020

MESKATAVVVDFTDPSAVYDNVKQATTFGMKSVVYMPRIKLDTVAALSAFCEKASMVSKGRLQFQLLSITATSKLWNPRLMQMAYDKAALKCKGREAVTDFDLNLGMETPVHEPKENKGYHQFHCFFLQPASSKEFKGFIHGLFTGSGDQSLTRETQGISNLSLFMACL*