AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0501400

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0501400 MtrunA17_Chr1g0203761 60.000 205 40 2 66 228 7 211 8.93e-69 214
Msa0501400 MtrunA17_Chr4g0073341 95.122 41 2 0 34 74 143 183 9.55e-18 81.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0501400 AT5G52100.1 56.213 169 33 1 88 215 25 193 2.13e-54 178
Msa0501400 AT2G33040.1 56.604 53 20 1 22 74 130 179 7.80e-11 62.0

Find 107 sgRNAs with CRISPR-Local

Find 354 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAAACCTGAGTTTGTTTA+TGG 0.100230 3_4:-42526316 Msa0501400:exon
AGTAAAGGAAAGATAATAAT+AGG 0.187247 3_4:-42525634 Msa0501400:three_prime_UTR
GTGGAACAGGTTGTAATAAA+TGG 0.207909 3_4:-42528864 Msa0501400:intron
AACAGAAGATAGTTGATTAT+TGG 0.224941 3_4:-42526284 Msa0501400:three_prime_UTR
AATCAACTATCTTCTGTTAT+AGG 0.232152 3_4:+42526289 None:intergenic
AGAGATAAAGTATGTTATAT+TGG 0.274675 3_4:-42529567 Msa0501400:CDS
CAATTTCGACGTTGCGGTAA+TGG 0.296694 3_4:+42527666 None:intergenic
TTATGATAGGCAATCCTATC+TGG 0.308805 3_4:+42525607 None:intergenic
GCAGATGATGATTACATATC+AGG 0.313619 3_4:-42525918 Msa0501400:intron
CACTGATACAAGAGCCTTGA+TGG 0.321757 3_4:-42525884 Msa0501400:three_prime_UTR
GAGCTGTTTGCAAGGCTATA+TGG 0.324607 3_4:+42525779 None:intergenic
GCATCCTCGAAGGAGTTTAA+AGG 0.331002 3_4:-42526702 Msa0501400:intron
CAAGGATGTGCAGCCTTATG+AGG 0.363133 3_4:+42526146 None:intergenic
ACTATATAGGCAACAACATT+TGG 0.363452 3_4:-42528039 Msa0501400:intron
GACTACAACCGCTGTGGCCT+TGG 0.364137 3_4:+42528421 None:intergenic
ATATGGTATAAGTATTTAAT+CGG 0.365194 3_4:+42525796 None:intergenic
TAATAATAGGGTTTCCAGAT+AGG 0.365703 3_4:-42525621 Msa0501400:three_prime_UTR
GAGATAAAGTATGTTATATT+GGG 0.394913 3_4:-42529566 Msa0501400:CDS
GTACATGCCGCGGATCAAAT+TGG 0.402326 3_4:-42528001 Msa0501400:CDS
ATGCATAGGGCCAATCAGTT+GGG 0.408330 3_4:+42525701 None:intergenic
CTGTAATAATATTGATCCTA+TGG 0.411160 3_4:+42527712 None:intergenic
TCTGAAGAAGTTAAAATCTC+TGG 0.431243 3_4:+42526089 None:intergenic
TCACCCCTTGCTCACCATGC+TGG 0.433731 3_4:+42527942 None:intergenic
AGTATATGACAATGTAAAAC+AGG 0.435138 3_4:-42528378 Msa0501400:intron
CTTATTCCAGGTTTCATCCA+TGG 0.441827 3_4:-42526390 Msa0501400:intron
GTAAAGGAAAGATAATAATA+GGG 0.442334 3_4:-42525633 Msa0501400:three_prime_UTR
CAGATTCAGTGGAATCTGTA+AGG 0.450140 3_4:-42526070 Msa0501400:three_prime_UTR
TTGCAGACTATTTGTAAGCC+AGG 0.450460 3_4:+42525550 None:intergenic
TCTTACATTTGCATTAGCCT+TGG 0.452314 3_4:+42527637 None:intergenic
GCAAATTATTATAAGAGTAA+AGG 0.452896 3_4:-42525649 Msa0501400:three_prime_UTR
ATAACAAACGAAATATTTGA+TGG 0.458452 3_4:-42525748 Msa0501400:three_prime_UTR
GGTGAGGTCTAAATCTTTCA+AGG 0.460191 3_4:+42526128 None:intergenic
TACATAGCAGAAATTCTTTG+AGG 0.464491 3_4:-42526237 Msa0501400:three_prime_UTR
TTCATCCATGGGCTCTTCAC+AGG 0.471535 3_4:-42526378 Msa0501400:CDS
TCCAGAAACTTCCATTCCTC+TGG 0.475788 3_4:+42528794 None:intergenic
GAAATATTTGATGGTGCTAA+AGG 0.477207 3_4:-42525739 Msa0501400:three_prime_UTR
ATAGCCTCTTCACTTAGGCT+TGG 0.478230 3_4:+42526028 None:intergenic
TTAAACTCCTTCGAGGATGC+AGG 0.479138 3_4:+42526705 None:intergenic
ACAAATAGTCTGCAATGAAA+AGG 0.479215 3_4:-42525542 Msa0501400:three_prime_UTR
CTTGCATAGCCTCTTCACTT+AGG 0.480071 3_4:+42526023 None:intergenic
TATACCTTTAAACTCCTTCG+AGG 0.483660 3_4:+42526698 None:intergenic
ATCATGTATCTCCTTATGAT+AGG 0.485561 3_4:+42525594 None:intergenic
GATGGAAAGAAGAAGGAAGA+AGG 0.490833 3_4:-42530325 Msa0501400:CDS
TTATTCCAGGTTTCATCCAT+GGG 0.490950 3_4:-42526389 Msa0501400:intron
CATGGGCTCTTCACAGGAAG+TGG 0.492997 3_4:-42526372 Msa0501400:CDS
AGATAGGATTGCCTATCATA+AGG 0.496987 3_4:-42525605 Msa0501400:three_prime_UTR
CACTTCCTGTGAAGAGCCCA+TGG 0.499204 3_4:+42526373 None:intergenic
TTCCTTGAGTCTCTCTTGTG+AGG 0.500081 3_4:+42526340 None:intergenic
ATGGAAAGAAGAAGGAAGAA+GGG 0.501486 3_4:-42530324 Msa0501400:CDS
ATGATACATGATATTAGAAA+AGG 0.502189 3_4:-42525576 Msa0501400:three_prime_UTR
AACTGATTGGCCCTATGCAT+GGG 0.502435 3_4:-42525698 Msa0501400:three_prime_UTR
TGGAGTTCAAAGCTGGAGTA+AGG 0.503066 3_4:-42525864 Msa0501400:three_prime_UTR
GTTGCTCCAACGCTTTCCAT+AGG 0.508224 3_4:-42527728 Msa0501400:CDS
TGATGCAGATGGAAAGAAGA+AGG 0.510322 3_4:-42530332 Msa0501400:CDS
CAACTGATTGGCCCTATGCA+TGG 0.512282 3_4:-42525699 Msa0501400:three_prime_UTR
CTCTGGTGTATGCAGCAAGA+AGG 0.513021 3_4:+42526106 None:intergenic
AGGATCAATATTATTACAGC+AGG 0.513741 3_4:-42527708 Msa0501400:CDS
TGTAGGAGCATTCCCTCATA+AGG 0.514702 3_4:-42526159 Msa0501400:three_prime_UTR
TTTAACTTCTTCAGATTCAG+TGG 0.515006 3_4:-42526081 Msa0501400:three_prime_UTR
GCCTTGATGGAGTTCAAAGC+TGG 0.517462 3_4:-42525871 Msa0501400:three_prime_UTR
ACTATAACGTCAGGGTGTCT+TGG 0.518817 3_4:-42527750 Msa0501400:intron
TTACCGCAACGTCGAAATTG+TGG 0.519053 3_4:-42527663 Msa0501400:CDS
GGGAATGCATTGTTCAAAGC+TGG 0.521453 3_4:-42530304 Msa0501400:intron
ACATTGTCATATACTGCAGA+AGG 0.525891 3_4:+42528386 None:intergenic
CATGCATAGGGCCAATCAGT+TGG 0.529277 3_4:+42525700 None:intergenic
TATATGAGAAACTATGAACT+TGG 0.533433 3_4:-42525488 Msa0501400:three_prime_UTR
AAAGAAGATTGATGCAGATG+AGG 0.536126 3_4:-42530362 Msa0501400:intron
TCCAGCTTTGAACTCCATCA+AGG 0.536851 3_4:+42525870 None:intergenic
GAGGAAAGAATTGATGCAGA+TGG 0.541097 3_4:-42530343 Msa0501400:CDS
TGTAATAAATGGAGCAGCAA+AGG 0.543811 3_4:-42528853 Msa0501400:CDS
CGTCGAAATTGTGGAATCCA+AGG 0.546529 3_4:-42527654 Msa0501400:CDS
CTGTCATTGAGCTGTTTGCA+AGG 0.548699 3_4:+42525771 None:intergenic
AGCAGTATTAGCTGTGACAA+AGG 0.549949 3_4:-42528817 Msa0501400:CDS
TGCAGACTATTTGTAAGCCA+GGG 0.558908 3_4:+42525551 None:intergenic
TGCATAGGGCCAATCAGTTG+GGG 0.559790 3_4:+42525702 None:intergenic
TGCTCCAAGCCTAAGTGAAG+AGG 0.559997 3_4:-42526032 Msa0501400:three_prime_UTR
GGCAAGCCATAAACAAACTC+AGG 0.560166 3_4:+42526310 None:intergenic
AAGGATGTGCAGCCTTATGA+GGG 0.571624 3_4:+42526147 None:intergenic
ATTGATCCTATGGAAAGCGT+TGG 0.571844 3_4:+42527722 None:intergenic
TGATATTAGAAAAGGATCCC+TGG 0.578018 3_4:-42525568 Msa0501400:three_prime_UTR
GACAAAATACAATTACTATG+AGG 0.578080 3_4:-42525676 Msa0501400:three_prime_UTR
TCTGGTGTATGCAGCAAGAA+GGG 0.579600 3_4:+42526107 None:intergenic
GCCGCGGATCAAATTGGATA+CGG 0.582539 3_4:-42527995 Msa0501400:CDS
GTCATCGATAAACTCACGAC+AGG 0.586511 3_4:-42529237 Msa0501400:intron
TGTGACAAAGGCCAGAGGAA+TGG 0.593244 3_4:-42528805 Msa0501400:CDS
TAGAAAACAAAGTTTACAAG+TGG 0.593903 3_4:-42529290 Msa0501400:CDS
CAAGACTTTCAATATATGCA+TGG 0.601988 3_4:-42525399 Msa0501400:three_prime_UTR
AATGGAGCAGCAAAGGAGGT+AGG 0.602441 3_4:-42528846 Msa0501400:CDS
GAATCCTCTGAATTATACTC+AGG 0.606536 3_4:-42529471 Msa0501400:intron
AATAAATGGAGCAGCAAAGG+AGG 0.611168 3_4:-42528850 Msa0501400:CDS
ATTGTCTGCATTCTGCGAGA+AGG 0.616513 3_4:-42527965 Msa0501400:CDS
TAGAAGGATTCATCACGTGT+AGG 0.618364 3_4:-42526176 Msa0501400:three_prime_UTR
ATTCCACAATTTCGACGTTG+CGG 0.630579 3_4:+42527660 None:intergenic
ACCGTATCCAATTTGATCCG+CGG 0.631428 3_4:+42527994 None:intergenic
CATTGTCATATACTGCAGAA+GGG 0.632959 3_4:+42528387 None:intergenic
CTAACCTGAGTATAATTCAG+AGG 0.633689 3_4:+42529467 None:intergenic
CTTACAACCTGCATCCTCGA+AGG 0.638582 3_4:-42526712 Msa0501400:CDS
ATTCTGCGAGAAGGCCAGCA+TGG 0.649764 3_4:-42527956 Msa0501400:intron
CATGAACCTAAAGAAAACAA+AGG 0.659528 3_4:-42526759 Msa0501400:CDS
AGCCTCACAAGAGAGACTCA+AGG 0.664869 3_4:-42526342 Msa0501400:CDS
AAAGCGTTGTGTACATGCCG+CGG 0.666394 3_4:-42528011 Msa0501400:CDS
TGTATGCAGCAAGAAGGGTG+AGG 0.675322 3_4:+42526112 None:intergenic
TATATTGGGAGAGAAAGCTA+AGG 0.687081 3_4:-42529552 Msa0501400:CDS
GCATAGGGCCAATCAGTTGG+GGG 0.712704 3_4:+42525703 None:intergenic
TTTGCAGTCCAAGGCCACAG+CGG 0.725554 3_4:-42528429 Msa0501400:intron
TTAGCTGTGACAAAGGCCAG+AGG 0.735270 3_4:-42528810 Msa0501400:CDS
GAAATCGACTACAACCGCTG+TGG 0.746133 3_4:+42528415 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTGATGTAAAAAATAAAT+GGG - chr3_4:42526466-42526485 Msa0501400:intron 10.0%
!!! AAATTGTTTTATTGATTTTA+AGG - chr3_4:42526623-42526642 Msa0501400:intron 10.0%
!!! AATTGTTTTATTGATTTTAA+GGG - chr3_4:42526624-42526643 Msa0501400:intron 10.0%
!!! ATAATATGATGATATTTTAT+AGG + chr3_4:42531126-42531145 None:intergenic 10.0%
!!! TTTTTTTTTTTTTAGTTGGA+TGG - chr3_4:42525488-42525507 Msa0501400:three_prime_UTR 15.0%
!!! TTTTTTTTTTTTAGTTGGAT+GGG - chr3_4:42525489-42525508 Msa0501400:three_prime_UTR 15.0%
!! AATAAATATAATTAAACTCG+TGG + chr3_4:42525620-42525639 None:intergenic 15.0%
!! GAATTGATGTAAAAAATAAA+TGG - chr3_4:42526465-42526484 Msa0501400:intron 15.0%
!!! AAATCAATAAAACAATTTTC+TGG + chr3_4:42526621-42526640 None:intergenic 15.0%
!!! AAATTTCTTAGATTTTCTAT+AGG - chr3_4:42529363-42529382 Msa0501400:intron 15.0%
!! AATAACATAGTAAATTATGA+TGG + chr3_4:42530052-42530071 None:intergenic 15.0%
!!! CAAGTAAAATATTTAAGTTA+TGG - chr3_4:42530121-42530140 Msa0501400:intron 15.0%
!! ATATGGTATAAGTATTTAAT+CGG + chr3_4:42530849-42530868 None:intergenic 15.0%
!! TAGCATCTACTTATATATAT+AGG - chr3_4:42525654-42525673 Msa0501400:three_prime_UTR 20.0%
!! ATTATGGTAAATCAGTTAAT+TGG - chr3_4:42525722-42525741 Msa0501400:three_prime_UTR 20.0%
!! ACAAAAAAACACACATATAT+AGG + chr3_4:42525757-42525776 None:intergenic 20.0%
!! AGAAAAAGAAAAAAAGAAGA+AGG - chr3_4:42525788-42525807 Msa0501400:three_prime_UTR 20.0%
!!! TTCAATTTTCGTTTTTGATT+TGG - chr3_4:42526089-42526108 Msa0501400:three_prime_UTR 20.0%
!!! TTTAATTGATGTTTTTTTCC+TGG - chr3_4:42526204-42526223 Msa0501400:three_prime_UTR 20.0%
!!! ATGTAAAAAATAAATGGGTT+GGG - chr3_4:42526471-42526490 Msa0501400:intron 20.0%
!! CAATAACAATACTAATTACT+TGG - chr3_4:42526527-42526546 Msa0501400:intron 20.0%
!!! AAATTCTGGAAAAACATTTT+TGG + chr3_4:42526562-42526581 None:intergenic 20.0%
!!! GTTTTTCCAGAATTTTTTTT+TGG - chr3_4:42526567-42526586 Msa0501400:intron 20.0%
!!! AAGGGTTTGATTTTTTTATT+AGG - chr3_4:42526642-42526661 Msa0501400:intron 20.0%
!!! AGGGTTTGATTTTTTTATTA+GGG - chr3_4:42526643-42526662 Msa0501400:intron 20.0%
!!! TTGTTTTGATTTTAAGAGAA+AGG - chr3_4:42526668-42526687 Msa0501400:intron 20.0%
!! AGAGATAAAGTATGTTATAT+TGG - chr3_4:42527075-42527094 Msa0501400:intron 20.0%
!! GAGATAAAGTATGTTATATT+GGG - chr3_4:42527076-42527095 Msa0501400:intron 20.0%
!! TCCTAAATTAAATTGTTTCA+AGG - chr3_4:42527250-42527269 Msa0501400:intron 20.0%
!!! TCCTTGAAACAATTTAATTT+AGG + chr3_4:42527254-42527273 None:intergenic 20.0%
!! ATATAAGCACTTAATTAACA+TGG - chr3_4:42527995-42528014 Msa0501400:CDS 20.0%
!! CTACAGGAAAATAAAAAATT+AGG + chr3_4:42528021-42528040 None:intergenic 20.0%
!! AAGTTGAAGTGTAAATTAAA+TGG - chr3_4:42528339-42528358 Msa0501400:intron 20.0%
!!! GTTTTTAAAGCAATTTTTCA+TGG - chr3_4:42528446-42528465 Msa0501400:intron 20.0%
!!! ACAAACATTCATATTTTAAG+TGG + chr3_4:42529066-42529085 None:intergenic 20.0%
!! TTAAAATATGAATGTTTGTC+CGG - chr3_4:42529067-42529086 Msa0501400:intron 20.0%
!! ATATTTGAATTAATGCCATT+TGG + chr3_4:42530151-42530170 None:intergenic 20.0%
!! CATAGTAATAAAAAATAGCA+TGG + chr3_4:42530204-42530223 None:intergenic 20.0%
!! ATAACAAACGAAATATTTGA+TGG - chr3_4:42530894-42530913 Msa0501400:intron 20.0%
!! GCAAATTATTATAAGAGTAA+AGG - chr3_4:42530993-42531012 Msa0501400:intron 20.0%
!! AGTAAAGGAAAGATAATAAT+AGG - chr3_4:42531008-42531027 Msa0501400:intron 20.0%
!! GTAAAGGAAAGATAATAATA+GGG - chr3_4:42531009-42531028 Msa0501400:intron 20.0%
!! ATGATACATGATATTAGAAA+AGG - chr3_4:42531066-42531085 Msa0501400:intron 20.0%
!! GAGTTTTCATGTATTTTGTT+TGG - chr3_4:42525421-42525440 Msa0501400:three_prime_UTR 25.0%
!! ATAATTAAACTCGTGGATTA+TGG + chr3_4:42525613-42525632 None:intergenic 25.0%
!! AATTACCATTTTACCCTTAA+TGG - chr3_4:42525695-42525714 Msa0501400:three_prime_UTR 25.0%
!! ATTACCATTTTACCCTTAAT+GGG - chr3_4:42525696-42525715 Msa0501400:three_prime_UTR 25.0%
! AAAAACACACATATATAGGT+AGG + chr3_4:42525753-42525772 None:intergenic 25.0%
!!! AAACAAAAAAAGGGTATTTG+TGG + chr3_4:42526120-42526139 None:intergenic 25.0%
!!! ATACCCTTTTTTTGTTTGAT+TGG - chr3_4:42526123-42526142 Msa0501400:three_prime_UTR 25.0%
!!! TACCCTTTTTTTGTTTGATT+GGG - chr3_4:42526124-42526143 Msa0501400:three_prime_UTR 25.0%
! AACCCAATCAAACAAAAAAA+GGG + chr3_4:42526129-42526148 None:intergenic 25.0%
! AAACCCAATCAAACAAAAAA+AGG + chr3_4:42526130-42526149 None:intergenic 25.0%
!!! AATCGATGGTTTTTTTTTTG+TGG - chr3_4:42526236-42526255 Msa0501400:three_prime_UTR 25.0%
!!! ATCGATGGTTTTTTTTTTGT+GGG - chr3_4:42526237-42526256 Msa0501400:three_prime_UTR 25.0%
! GATGTAAAAAATAAATGGGT+TGG - chr3_4:42526470-42526489 Msa0501400:intron 25.0%
! TCGAAACCAAAAAAAAATTC+TGG + chr3_4:42526576-42526595 None:intergenic 25.0%
!!! GAATTTTTTTTTGGTTTCGA+TGG - chr3_4:42526576-42526595 Msa0501400:intron 25.0%
! TCTTATACTGCAATACTAAA+TGG - chr3_4:42526952-42526971 Msa0501400:intron 25.0%
! CTAGATATATGTAAAACACA+AGG + chr3_4:42527217-42527236 None:intergenic 25.0%
! TCAAGGAATATTGCAAAATA+TGG - chr3_4:42527267-42527286 Msa0501400:intron 25.0%
! CTAGATATAAGTAAAACACA+AGG + chr3_4:42527335-42527354 None:intergenic 25.0%
! TAGAAAACAAAGTTTACAAG+TGG - chr3_4:42527352-42527371 Msa0501400:intron 25.0%
! ATAAAAATGAACAAAAGCAG+AGG + chr3_4:42527477-42527496 None:intergenic 25.0%
! TTCTGTACTAAAATTCAACA+TGG + chr3_4:42527647-42527666 None:intergenic 25.0%
!!! ATATTGGACAGGTTTTTTTT+TGG - chr3_4:42527899-42527918 Msa0501400:intron 25.0%
!!! TATTGGACAGGTTTTTTTTT+GGG - chr3_4:42527900-42527919 Msa0501400:intron 25.0%
!!! TTTTTTTTTGGGAGAGATTA+TGG - chr3_4:42527911-42527930 Msa0501400:intron 25.0%
! TTTAGTATAGGTATTTCAAG+AGG + chr3_4:42528062-42528081 None:intergenic 25.0%
! ATAGTAAGGTCATTTAGTAT+AGG + chr3_4:42528074-42528093 None:intergenic 25.0%
! TATACTAAATGACCTTACTA+TGG - chr3_4:42528073-42528092 Msa0501400:intron 25.0%
! TGAATTAGCAATAACAAACT+TGG - chr3_4:42528130-42528149 Msa0501400:intron 25.0%
! AGTATATGACAATGTAAAAC+AGG - chr3_4:42528264-42528283 Msa0501400:intron 25.0%
! CTTCAACTTAAATGCATATT+TGG + chr3_4:42528328-42528347 None:intergenic 25.0%
! AGTGTAAATTAAATGGTTCT+TGG - chr3_4:42528346-42528365 Msa0501400:intron 25.0%
! CATAATATAGTCTTCAATCT+TGG + chr3_4:42528507-42528526 None:intergenic 25.0%
!! TTGTTTCTTCTTCACTATAT+AGG - chr3_4:42528590-42528609 Msa0501400:intron 25.0%
!!! CTAAACCATTTGTTCTTTTT+TGG - chr3_4:42528859-42528878 Msa0501400:intron 25.0%
! AAATGCCAAAAAAGAACAAA+TGG + chr3_4:42528867-42528886 None:intergenic 25.0%
!!! ATTTGTTCTTTTTTGGCATT+TGG - chr3_4:42528866-42528885 Msa0501400:intron 25.0%
! CTGTAATAATATTGATCCTA+TGG + chr3_4:42528933-42528952 None:intergenic 25.0%
! GTTTCAAAAAAACCTAATGT+CGG - chr3_4:42529303-42529322 Msa0501400:intron 25.0%
! TCTAAGAAATTTCTTTACCA+TGG + chr3_4:42529355-42529374 None:intergenic 25.0%
! ACATAATGAAACAAATCAGA+AGG + chr3_4:42529454-42529473 None:intergenic 25.0%
! TTTGTTTCATTATGTTCTTC+AGG - chr3_4:42529459-42529478 Msa0501400:intron 25.0%
!!! ATAGCTAAGCCATTTTTTAA+AGG - chr3_4:42529630-42529649 Msa0501400:intron 25.0%
!!! TGATATCCTTTGTTTTCTTT+AGG + chr3_4:42529892-42529911 None:intergenic 25.0%
! ATGCAAATTTACTTCAATAC+TGG + chr3_4:42530099-42530118 None:intergenic 25.0%
! TTAAGTTATGGAAAACCAAA+TGG - chr3_4:42530133-42530152 Msa0501400:intron 25.0%
! GTTATCTTTAAACTTATTCC+AGG - chr3_4:42530240-42530259 Msa0501400:intron 25.0%
! AATCAACTATCTTCTGTTAT+AGG + chr3_4:42530356-42530375 None:intergenic 25.0%
! AACAGAAGATAGTTGATTAT+TGG - chr3_4:42530358-42530377 Msa0501400:CDS 25.0%
!!! ATCTTTTTCGAGAAATTAGA+AGG - chr3_4:42530450-42530469 Msa0501400:intron 25.0%
! GACAAAATACAATTACTATG+AGG - chr3_4:42530966-42530985 Msa0501400:intron 25.0%
! TATATGAGAAACTATGAACT+TGG - chr3_4:42531154-42531173 Msa0501400:intron 25.0%
! TTACCATTTTACCCTTAATG+GGG - chr3_4:42525697-42525716 Msa0501400:three_prime_UTR 30.0%
AAAGAAGAAGGAAAACAGAA+CGG - chr3_4:42525800-42525819 Msa0501400:three_prime_UTR 30.0%
AAGCTTCAATTACTCAACAA+TGG + chr3_4:42526002-42526021 None:intergenic 30.0%
ACAGAAGTTAAAGAGAATCA+AGG - chr3_4:42526053-42526072 Msa0501400:three_prime_UTR 30.0%
!!! GTTTTTTTTTTGTGGGTTTC+TGG - chr3_4:42526244-42526263 Msa0501400:three_prime_UTR 30.0%
CAAGTCTACATTCTGTTTAT+AGG - chr3_4:42526819-42526838 Msa0501400:intron 30.0%
ATGCTCCATGTATTAAACTT+TGG - chr3_4:42526859-42526878 Msa0501400:intron 30.0%
AGACACCAAAGTTTAATACA+TGG + chr3_4:42526867-42526886 None:intergenic 30.0%
AACCTTATGACATCTATACA+TGG + chr3_4:42526993-42527012 None:intergenic 30.0%
AACCATGTATAGATGTCATA+AGG - chr3_4:42527028-42527047 Msa0501400:intron 30.0%
TTCCTTATGACATCTATACA+TGG + chr3_4:42527033-42527052 None:intergenic 30.0%
TGTATAGATGTCATAAGGAA+AGG - chr3_4:42527033-42527052 Msa0501400:intron 30.0%
GTATAGATGTCATAAGGAAA+GGG - chr3_4:42527034-42527053 Msa0501400:intron 30.0%
! TGTTGTTTGTAATGTGAAGA+TGG - chr3_4:42527686-42527705 Msa0501400:CDS 30.0%
CTATTGATACTCAACATGTT+GGG - chr3_4:42527872-42527891 Msa0501400:intron 30.0%
TATTGATACTCAACATGTTG+GGG - chr3_4:42527873-42527892 Msa0501400:intron 30.0%
!! TTTATTTTCCTGTAGCTTTG+TGG - chr3_4:42528026-42528045 Msa0501400:CDS 30.0%
! AAATGACCTTACTATGGTTT+TGG - chr3_4:42528079-42528098 Msa0501400:intron 30.0%
! AATGACCTTACTATGGTTTT+GGG - chr3_4:42528080-42528099 Msa0501400:intron 30.0%
TGTAAAACAGGTTTGAATTC+TGG - chr3_4:42528276-42528295 Msa0501400:intron 30.0%
AAGACTGAGAGTTTATTTAG+TGG - chr3_4:42528371-42528390 Msa0501400:intron 30.0%
AGACTGAGAGTTTATTTAGT+GGG - chr3_4:42528372-42528391 Msa0501400:intron 30.0%
GATTCTTAATTAGCTAGCAA+TGG - chr3_4:42528394-42528413 Msa0501400:CDS 30.0%
! AAGCAATTTTTCATGGCTAA+AGG - chr3_4:42528453-42528472 Msa0501400:intron 30.0%
! TGTAGAATTATGCTGTGTTT+TGG - chr3_4:42528550-42528569 Msa0501400:intron 30.0%
AGTGAAGAAGAAACAATCAA+TGG + chr3_4:42528586-42528605 None:intergenic 30.0%
ACTATATAGGCAACAACATT+TGG - chr3_4:42528603-42528622 Msa0501400:intron 30.0%
ATTTGGTTAACTATAACGTC+AGG - chr3_4:42528883-42528902 Msa0501400:intron 30.0%
TTTGGTTAACTATAACGTCA+GGG - chr3_4:42528884-42528903 Msa0501400:intron 30.0%
AGGATCAATATTATTACAGC+AGG - chr3_4:42528934-42528953 Msa0501400:intron 30.0%
GTTGTACTTGACAAATTAGA+AGG + chr3_4:42529146-42529165 None:intergenic 30.0%
TAGAGAAATTACACATTTCC+TGG - chr3_4:42529270-42529289 Msa0501400:CDS 30.0%
TATGTCCATCATCTAATGTA+TGG - chr3_4:42529409-42529428 Msa0501400:intron 30.0%
ATGTCCATCATCTAATGTAT+GGG - chr3_4:42529410-42529429 Msa0501400:intron 30.0%
TAAATTTGCAACTGTATCAG+AGG + chr3_4:42529520-42529539 None:intergenic 30.0%
AAAATGGCTTAGCTATGAAA+AGG + chr3_4:42529626-42529645 None:intergenic 30.0%
! CACAGTTTGCCTTTAAAAAA+TGG + chr3_4:42529642-42529661 None:intergenic 30.0%
ATCTTAACACATTACAGACA+AGG + chr3_4:42529743-42529762 None:intergenic 30.0%
! ACTGACTTTGATCTGAATTT+GGG - chr3_4:42529844-42529863 Msa0501400:intron 30.0%
!! TTTTCTTTAGGTTCATGTAC+TGG + chr3_4:42529880-42529899 None:intergenic 30.0%
CATGAACCTAAAGAAAACAA+AGG - chr3_4:42529883-42529902 Msa0501400:intron 30.0%
! TTCAAACCTGAGTTTGTTTA+TGG - chr3_4:42530326-42530345 Msa0501400:CDS 30.0%
TACATAGCAGAAATTCTTTG+AGG - chr3_4:42530405-42530424 Msa0501400:intron 30.0%
TCTGAAGAAGTTAAAATCTC+TGG + chr3_4:42530556-42530575 None:intergenic 30.0%
! TTTAACTTCTTCAGATTCAG+TGG - chr3_4:42530561-42530580 Msa0501400:intron 30.0%
!! GAAATATTTGATGGTGCTAA+AGG - chr3_4:42530903-42530922 Msa0501400:intron 30.0%
TAATAATAGGGTTTCCAGAT+AGG - chr3_4:42531021-42531040 Msa0501400:intron 30.0%
ATCATGTATCTCCTTATGAT+AGG + chr3_4:42531051-42531070 None:intergenic 30.0%
ACAAATAGTCTGCAATGAAA+AGG - chr3_4:42531100-42531119 Msa0501400:intron 30.0%
CAAGACTTTCAATATATGCA+TGG - chr3_4:42531243-42531262 Msa0501400:intron 30.0%
!! CATGTATTTTGTTTGGTCTG+TGG - chr3_4:42525428-42525447 Msa0501400:three_prime_UTR 35.0%
! TCTGTGGAGATGTCAATTTT+TGG - chr3_4:42525444-42525463 Msa0501400:three_prime_UTR 35.0%
!!! TGGAGATGTCAATTTTTGGT+TGG - chr3_4:42525448-42525467 Msa0501400:three_prime_UTR 35.0%
GGGTAAAATGGTAATTTCCA+CGG + chr3_4:42525691-42525710 None:intergenic 35.0%
! TACCATTTTACCCTTAATGG+GGG - chr3_4:42525698-42525717 Msa0501400:three_prime_UTR 35.0%
TACCATAATACCCCCATTAA+GGG + chr3_4:42525711-42525730 None:intergenic 35.0%
TTACCATAATACCCCCATTA+AGG + chr3_4:42525712-42525731 None:intergenic 35.0%
!! ATGGAGGTTTTGTGAGTTAT+GGG + chr3_4:42525983-42526002 None:intergenic 35.0%
!! AATGGAGGTTTTGTGAGTTA+TGG + chr3_4:42525984-42526003 None:intergenic 35.0%
CTTCAATTACTCAACAATGG+AGG + chr3_4:42525999-42526018 None:intergenic 35.0%
TAAAGAGAATCAAGGTGAGT+TGG - chr3_4:42526061-42526080 Msa0501400:three_prime_UTR 35.0%
AAAGAGAATCAAGGTGAGTT+GGG - chr3_4:42526062-42526081 Msa0501400:three_prime_UTR 35.0%
! CCATCGATTAAGAAAAATCC+AGG + chr3_4:42526225-42526244 None:intergenic 35.0%
! CCTGGATTTTTCTTAATCGA+TGG - chr3_4:42526222-42526241 Msa0501400:three_prime_UTR 35.0%
AAAGAAGATTGATGCAGATG+AGG - chr3_4:42526280-42526299 Msa0501400:three_prime_UTR 35.0%
ATGGAAAGAAGAAGGAAGAA+GGG - chr3_4:42526318-42526337 Msa0501400:exon 35.0%
!! AAAAATAAATGGGTTGGGAG+TGG - chr3_4:42526476-42526495 Msa0501400:intron 35.0%
!!! TTTTGGTTTCGATGGTGATT+AGG - chr3_4:42526584-42526603 Msa0501400:intron 35.0%
! TTTGGTTTCGATGGTGATTA+GGG - chr3_4:42526585-42526604 Msa0501400:intron 35.0%
!! TGAGTTGTGTCACTTTGTTT+AGG - chr3_4:42526893-42526912 Msa0501400:intron 35.0%
!! GAGTTGTGTCACTTTGTTTA+GGG - chr3_4:42526894-42526913 Msa0501400:intron 35.0%
GACCATGTATAGATGTCATA+AGG - chr3_4:42526988-42527007 Msa0501400:intron 35.0%
TATATTGGGAGAGAAAGCTA+AGG - chr3_4:42527090-42527109 Msa0501400:intron 35.0%
GAATCCTCTGAATTATACTC+AGG - chr3_4:42527171-42527190 Msa0501400:intron 35.0%
CTAACCTGAGTATAATTCAG+AGG + chr3_4:42527178-42527197 None:intergenic 35.0%
AATATGGACATTGCTCTTGA+TGG - chr3_4:42527283-42527302 Msa0501400:intron 35.0%
TTATGATACCTGGATTCCAT+AGG + chr3_4:42527451-42527470 None:intergenic 35.0%
! TCATTTTCATGCAGTAGCTT+TGG - chr3_4:42527526-42527545 Msa0501400:intron 35.0%
GATTCTACTGTTTATGAGCT+TGG - chr3_4:42527618-42527637 Msa0501400:intron 35.0%
TTGTAATGTGAAGATGGAAC+AGG - chr3_4:42527692-42527711 Msa0501400:CDS 35.0%
! TCAATTTTCAACACCCTTTG+TGG - chr3_4:42527759-42527778 Msa0501400:intron 35.0%
ATTACAACCTGTTCCACAAA+GGG + chr3_4:42527775-42527794 None:intergenic 35.0%
TATTACAACCTGTTCCACAA+AGG + chr3_4:42527776-42527795 None:intergenic 35.0%
GTGGAACAGGTTGTAATAAA+TGG - chr3_4:42527778-42527797 Msa0501400:intron 35.0%
TGTAATAAATGGAGCAGCAA+AGG - chr3_4:42527789-42527808 Msa0501400:intron 35.0%
GCTATTGATACTCAACATGT+TGG - chr3_4:42527871-42527890 Msa0501400:intron 35.0%
CATTGTCATATACTGCAGAA+GGG + chr3_4:42528258-42528277 None:intergenic 35.0%
ACATTGTCATATACTGCAGA+AGG + chr3_4:42528259-42528278 None:intergenic 35.0%
TCAACATACTTATATGCAGC+TGG - chr3_4:42528302-42528321 Msa0501400:intron 35.0%
AGGAAACAACTTCAAGTGAT+AGG - chr3_4:42528473-42528492 Msa0501400:intron 35.0%
ACTTCAAGTGATAGGACAAT+AGG - chr3_4:42528481-42528500 Msa0501400:intron 35.0%
! TCTTACATTTGCATTAGCCT+TGG + chr3_4:42529008-42529027 None:intergenic 35.0%
CAAACCAAATTGTTATCGGT+AGG + chr3_4:42529329-42529348 None:intergenic 35.0%
GCAGCAAACCAAATTGTTAT+CGG + chr3_4:42529333-42529352 None:intergenic 35.0%
AGATCCCATACATTAGATGA+TGG + chr3_4:42529417-42529436 None:intergenic 35.0%
GGGAAAGACAACTCAAAAAA+TGG + chr3_4:42529550-42529569 None:intergenic 35.0%
ATATTCCACTCCTTGATCAA+CGG + chr3_4:42529571-42529590 None:intergenic 35.0%
!! GCTCTAAAGTTCTTGTCATT+TGG - chr3_4:42529661-42529680 Msa0501400:intron 35.0%
! AAAGTTCTTGTCATTTGGTG+AGG - chr3_4:42529666-42529685 Msa0501400:intron 35.0%
! AAGTTCTTGTCATTTGGTGA+GGG - chr3_4:42529667-42529686 Msa0501400:intron 35.0%
ACATTACAGACAAGGTAAGA+CGG + chr3_4:42529735-42529754 None:intergenic 35.0%
CCAGAAAGAGAGAAACATAT+TGG + chr3_4:42529771-42529790 None:intergenic 35.0%
CCAATATGTTTCTCTCTTTC+TGG - chr3_4:42529768-42529787 Msa0501400:intron 35.0%
! TTTCTCTCTTTCTGGAAATC+AGG - chr3_4:42529776-42529795 Msa0501400:intron 35.0%
! TTCTCTCTTTCTGGAAATCA+GGG - chr3_4:42529777-42529796 Msa0501400:intron 35.0%
!! AAAGCAGCTCTAAAATGCAA+GGG - chr3_4:42529808-42529827 Msa0501400:intron 35.0%
! GACTGACTTTGATCTGAATT+TGG - chr3_4:42529843-42529862 Msa0501400:intron 35.0%
TATACCTTTAAACTCCTTCG+AGG + chr3_4:42529947-42529966 None:intergenic 35.0%
! CTGGAAGAAATTGCTTTGAA+AGG + chr3_4:42530080-42530099 None:intergenic 35.0%
GCATGGAAATCTTATGACAT+AGG + chr3_4:42530187-42530206 None:intergenic 35.0%
TTATTCCAGGTTTCATCCAT+GGG - chr3_4:42530253-42530272 Msa0501400:intron 35.0%
GCAGATGATGATTACATATC+AGG - chr3_4:42530724-42530743 Msa0501400:intron 35.0%
! TGTATTTTGTCCCATGCATA+GGG + chr3_4:42530957-42530976 None:intergenic 35.0%
! TTGTATTTTGTCCCATGCAT+AGG + chr3_4:42530958-42530977 None:intergenic 35.0%
TTATGATAGGCAATCCTATC+TGG + chr3_4:42531038-42531057 None:intergenic 35.0%
AGATAGGATTGCCTATCATA+AGG - chr3_4:42531037-42531056 Msa0501400:intron 35.0%
TGATATTAGAAAAGGATCCC+TGG - chr3_4:42531074-42531093 Msa0501400:intron 35.0%
TGATCAGACAATAACCAGCA+TGG - chr3_4:42525557-42525576 Msa0501400:three_prime_UTR 40.0%
! AACTCGTGGATTATGGACAA+AGG + chr3_4:42525606-42525625 None:intergenic 40.0%
TATAGGAAGATACATGTCCG+TGG - chr3_4:42525671-42525690 Msa0501400:three_prime_UTR 40.0%
TACCCCCATTAAGGGTAAAA+TGG + chr3_4:42525703-42525722 None:intergenic 40.0%
!! TACCCTTAATGGGGGTATTA+TGG - chr3_4:42525706-42525725 Msa0501400:three_prime_UTR 40.0%
AAGAAGAGAGGTGAGAAGAA+CGG - chr3_4:42525829-42525848 Msa0501400:three_prime_UTR 40.0%
TGAGAAGAACGGGAAAAGAA+GGG - chr3_4:42525840-42525859 Msa0501400:three_prime_UTR 40.0%
GAGATGAGAAGAAGAGGAAA+CGG - chr3_4:42525872-42525891 Msa0501400:three_prime_UTR 40.0%
AGATGAGAAGAAGAGGAAAC+GGG - chr3_4:42525873-42525892 Msa0501400:three_prime_UTR 40.0%
! ATGCAAGTTGAGGAAGAAGA+AGG + chr3_4:42525949-42525968 None:intergenic 40.0%
TTTGTGAGTTATGGGTGAGA+GGG + chr3_4:42525975-42525994 None:intergenic 40.0%
! TTTTGTGAGTTATGGGTGAG+AGG + chr3_4:42525976-42525995 None:intergenic 40.0%
GAGGAAAGAATTGATGCAGA+TGG - chr3_4:42526299-42526318 Msa0501400:three_prime_UTR 40.0%
TGATGCAGATGGAAAGAAGA+AGG - chr3_4:42526310-42526329 Msa0501400:exon 40.0%
GATGGAAAGAAGAAGGAAGA+AGG - chr3_4:42526317-42526336 Msa0501400:exon 40.0%
GAGACATTACCTCAAACACT+TGG + chr3_4:42526508-42526527 None:intergenic 40.0%
TAAACTCACGACAGGTAATG+AGG - chr3_4:42527413-42527432 Msa0501400:intron 40.0%
TTTGATTCCCATAAAGCGTG+TGG - chr3_4:42527590-42527609 Msa0501400:intron 40.0%
AATAAATGGAGCAGCAAAGG+AGG - chr3_4:42527792-42527811 Msa0501400:intron 40.0%
AGCAGTATTAGCTGTGACAA+AGG - chr3_4:42527825-42527844 Msa0501400:intron 40.0%
CAACATGTTGGGGAAGATAT+TGG - chr3_4:42527883-42527902 Msa0501400:intron 40.0%
TAGAGCCCAAAACCATAGTA+AGG + chr3_4:42528088-42528107 None:intergenic 40.0%
! ATTGATCCTATGGAAAGCGT+TGG + chr3_4:42528923-42528942 None:intergenic 40.0%
ATTCCACAATTTCGACGTTG+CGG + chr3_4:42528985-42529004 None:intergenic 40.0%
ACACCTGATAAGATCACATC+CGG + chr3_4:42529089-42529108 None:intergenic 40.0%
! TTTGAAACAGTGCACATACC+AGG + chr3_4:42529291-42529310 None:intergenic 40.0%
!! AACAATTTGGTTTGCTGCCA+TGG - chr3_4:42529335-42529354 Msa0501400:intron 40.0%
TATTCCACTCCTTGATCAAC+GGG + chr3_4:42529570-42529589 None:intergenic 40.0%
ACTACAACACATGCACAATG+GGG + chr3_4:42529697-42529716 None:intergenic 40.0%
GACTACAACACATGCACAAT+GGG + chr3_4:42529698-42529717 None:intergenic 40.0%
AGACTACAACACATGCACAA+TGG + chr3_4:42529699-42529718 None:intergenic 40.0%
!! CAAAGCAGCTCTAAAATGCA+AGG - chr3_4:42529807-42529826 Msa0501400:intron 40.0%
! TCTAAAATGCAAGGGAAGAG+AGG - chr3_4:42529816-42529835 Msa0501400:intron 40.0%
CTTTGATCTGAATTTGGGCA+TGG - chr3_4:42529849-42529868 Msa0501400:intron 40.0%
CTTATTCCAGGTTTCATCCA+TGG - chr3_4:42530252-42530271 Msa0501400:intron 40.0%
TAGAAGGATTCATCACGTGT+AGG - chr3_4:42530466-42530485 Msa0501400:intron 40.0%
GGTGAGGTCTAAATCTTTCA+AGG + chr3_4:42530517-42530536 None:intergenic 40.0%
CAGATTCAGTGGAATCTGTA+AGG - chr3_4:42530572-42530591 Msa0501400:intron 40.0%
TGTTCTATTGCAACCTGCTT+AGG - chr3_4:42530682-42530701 Msa0501400:intron 40.0%
ATTAGAGAGCTAACCTAAGC+AGG + chr3_4:42530698-42530717 None:intergenic 40.0%
TGCAGACTATTTGTAAGCCA+GGG + chr3_4:42531094-42531113 None:intergenic 40.0%
TTGCAGACTATTTGTAAGCC+AGG + chr3_4:42531095-42531114 None:intergenic 40.0%
GACAATAACCAGCATGGCAT+AGG - chr3_4:42525563-42525582 Msa0501400:three_prime_UTR 45.0%
! CGTGGATTATGGACAAAGGA+CGG + chr3_4:42525602-42525621 None:intergenic 45.0%
AGAAGAGAGGTGAGAAGAAC+GGG - chr3_4:42525830-42525849 Msa0501400:three_prime_UTR 45.0%
GTGAGAAGAACGGGAAAAGA+AGG - chr3_4:42525839-42525858 Msa0501400:three_prime_UTR 45.0%
AGAAGAAGAGGAAACGGGTA+CGG - chr3_4:42525878-42525897 Msa0501400:three_prime_UTR 45.0%
! CAAGTTGAGGAAGAAGAAGG+AGG + chr3_4:42525946-42525965 None:intergenic 45.0%
GGGAATGCATTGTTCAAAGC+TGG - chr3_4:42526338-42526357 Msa0501400:CDS 45.0%
GTTTCGATGGTGATTAGGGT+TGG - chr3_4:42526589-42526608 Msa0501400:intron 45.0%
GTCATCGATAAACTCACGAC+AGG - chr3_4:42527405-42527424 Msa0501400:intron 45.0%
GCAGAGGAGTTTATGATACC+TGG + chr3_4:42527461-42527480 None:intergenic 45.0%
TCCTGATCCACACGCTTTAT+GGG + chr3_4:42527600-42527619 None:intergenic 45.0%
ATCCTGATCCACACGCTTTA+TGG + chr3_4:42527601-42527620 None:intergenic 45.0%
TTCAACACCCTTTGTGGAAC+AGG - chr3_4:42527765-42527784 Msa0501400:intron 45.0%
TCCAGAAACTTCCATTCCTC+TGG + chr3_4:42527851-42527870 None:intergenic 45.0%
TGTTGGGGAAGATATTGGAC+AGG - chr3_4:42527888-42527907 Msa0501400:intron 45.0%
!! TTTCCTGTAGCTTTGTGGCA+TGG - chr3_4:42528031-42528050 Msa0501400:CDS 45.0%
!!! GGTTTTGGGCTCTATATCTC+AGG - chr3_4:42528094-42528113 Msa0501400:intron 45.0%
GAATTGCGATTTGCAGTCCA+AGG - chr3_4:42528204-42528223 Msa0501400:intron 45.0%
ACCGTATCCAATTTGATCCG+CGG + chr3_4:42528651-42528670 None:intergenic 45.0%
ATTGTCTGCATTCTGCGAGA+AGG - chr3_4:42528677-42528696 Msa0501400:intron 45.0%
! ACTATAACGTCAGGGTGTCT+TGG - chr3_4:42528892-42528911 Msa0501400:intron 45.0%
CAATTTCGACGTTGCGGTAA+TGG + chr3_4:42528979-42528998 None:intergenic 45.0%
TTACCGCAACGTCGAAATTG+TGG - chr3_4:42528979-42528998 Msa0501400:intron 45.0%
CGTCGAAATTGTGGAATCCA+AGG - chr3_4:42528988-42529007 Msa0501400:intron 45.0%
TGTCCGGATGTGATCTTATC+AGG - chr3_4:42529083-42529102 Msa0501400:intron 45.0%
TCGGCCTACCGATAACAATT+TGG - chr3_4:42529322-42529341 Msa0501400:intron 45.0%
GTTGTCTTTCCCGTTGATCA+AGG - chr3_4:42529558-42529577 Msa0501400:CDS 45.0%
TTAAACTCCTTCGAGGATGC+AGG + chr3_4:42529940-42529959 None:intergenic 45.0%
GCATCCTCGAAGGAGTTTAA+AGG - chr3_4:42529940-42529959 Msa0501400:intron 45.0%
TTCCTTGAGTCTCTCTTGTG+AGG + chr3_4:42530305-42530324 None:intergenic 45.0%
GGCAAGCCATAAACAAACTC+AGG + chr3_4:42530335-42530354 None:intergenic 45.0%
!! TGTAGGAGCATTCCCTCATA+AGG - chr3_4:42530483-42530502 Msa0501400:intron 45.0%
! AAGGATGTGCAGCCTTATGA+GGG + chr3_4:42530498-42530517 None:intergenic 45.0%
TCTGGTGTATGCAGCAAGAA+GGG + chr3_4:42530538-42530557 None:intergenic 45.0%
ATAGCCTCTTCACTTAGGCT+TGG + chr3_4:42530617-42530636 None:intergenic 45.0%
CTTGCATAGCCTCTTCACTT+AGG + chr3_4:42530622-42530641 None:intergenic 45.0%
CACTGATACAAGAGCCTTGA+TGG - chr3_4:42530758-42530777 Msa0501400:intron 45.0%
!! TCCAGCTTTGAACTCCATCA+AGG + chr3_4:42530775-42530794 None:intergenic 45.0%
TGGAGTTCAAAGCTGGAGTA+AGG - chr3_4:42530778-42530797 Msa0501400:intron 45.0%
GAGCTGTTTGCAAGGCTATA+TGG + chr3_4:42530866-42530885 None:intergenic 45.0%
CTGTCATTGAGCTGTTTGCA+AGG + chr3_4:42530874-42530893 None:intergenic 45.0%
AATATGCTCCCCCAACTGAT+TGG - chr3_4:42530931-42530950 Msa0501400:intron 45.0%
ATGCATAGGGCCAATCAGTT+GGG + chr3_4:42530944-42530963 None:intergenic 45.0%
! AACTGATTGGCCCTATGCAT+GGG - chr3_4:42530944-42530963 Msa0501400:intron 45.0%
!!! TTTTTTTTTTTTTTTTTAGT+TGG - chr3_4:42525484-42525503 Msa0501400:three_prime_UTR 5.0%
!!! TTTTACTAATATATTAAATT+TGG + chr3_4:42529992-42530011 None:intergenic 5.0%
GAACGGACAGAGAAGAAGAG+AGG - chr3_4:42525817-42525836 Msa0501400:three_prime_UTR 50.0%
GAAGAACGGGAAAAGAAGGG+AGG - chr3_4:42525843-42525862 Msa0501400:three_prime_UTR 50.0%
TCGAGGGAGATGAGAAGAAG+AGG - chr3_4:42525866-42525885 Msa0501400:three_prime_UTR 50.0%
GAAGAAGAGGAAACGGGTAC+GGG - chr3_4:42525879-42525898 Msa0501400:three_prime_UTR 50.0%
AAACGGGTACGGGAGAAAGA+AGG - chr3_4:42525889-42525908 Msa0501400:three_prime_UTR 50.0%
AACGGGTACGGGAGAAAGAA+GGG - chr3_4:42525890-42525909 Msa0501400:three_prime_UTR 50.0%
! GAGAGGGAGTATGCAAGTTG+AGG + chr3_4:42525959-42525978 None:intergenic 50.0%
TGGCACTCACCAAGTGTTTG+AGG - chr3_4:42526496-42526515 Msa0501400:intron 50.0%
TCCCATAAAGCGTGTGGATC+AGG - chr3_4:42527596-42527615 Msa0501400:intron 50.0%
AATGGAGCAGCAAAGGAGGT+AGG - chr3_4:42527796-42527815 Msa0501400:intron 50.0%
TTAGCTGTGACAAAGGCCAG+AGG - chr3_4:42527832-42527851 Msa0501400:intron 50.0%
TGTGACAAAGGCCAGAGGAA+TGG - chr3_4:42527837-42527856 Msa0501400:intron 50.0%
GCCAGAGGAATGGAAGTTTC+TGG - chr3_4:42527847-42527866 Msa0501400:intron 50.0%
CTTCCATGCCACAAAGCTAC+AGG + chr3_4:42528037-42528056 None:intergenic 50.0%
GAAATCGACTACAACCGCTG+TGG + chr3_4:42528230-42528249 None:intergenic 50.0%
!! AAAGCGTTGTGTACATGCCG+CGG - chr3_4:42528631-42528650 Msa0501400:intron 50.0%
GTACATGCCGCGGATCAAAT+TGG - chr3_4:42528641-42528660 Msa0501400:intron 50.0%
GCCGCGGATCAAATTGGATA+CGG - chr3_4:42528647-42528666 Msa0501400:intron 50.0%
GTTGCTCCAACGCTTTCCAT+AGG - chr3_4:42528914-42528933 Msa0501400:intron 50.0%
GTTATCGGTAGGCCGACATT+AGG + chr3_4:42529318-42529337 None:intergenic 50.0%
CTTTCCCGTTGATCAAGGAG+TGG - chr3_4:42529563-42529582 Msa0501400:CDS 50.0%
CAACACATGCACAATGGGGT+TGG + chr3_4:42529693-42529712 None:intergenic 50.0%
CTTACAACCTGCATCCTCGA+AGG - chr3_4:42529930-42529949 Msa0501400:intron 50.0%
AAGAGCCCATGGATGAAACC+TGG + chr3_4:42530261-42530280 None:intergenic 50.0%
TTCATCCATGGGCTCTTCAC+AGG - chr3_4:42530264-42530283 Msa0501400:intron 50.0%
AGCCTCACAAGAGAGACTCA+AGG - chr3_4:42530300-42530319 Msa0501400:intron 50.0%
! CAAGGATGTGCAGCCTTATG+AGG + chr3_4:42530499-42530518 None:intergenic 50.0%
TGTATGCAGCAAGAAGGGTG+AGG + chr3_4:42530533-42530552 None:intergenic 50.0%
CTCTGGTGTATGCAGCAAGA+AGG + chr3_4:42530539-42530558 None:intergenic 50.0%
TGCTCCAAGCCTAAGTGAAG+AGG - chr3_4:42530610-42530629 Msa0501400:intron 50.0%
GCCTTGATGGAGTTCAAAGC+TGG - chr3_4:42530771-42530790 Msa0501400:intron 50.0%
TGCATAGGGCCAATCAGTTG+GGG + chr3_4:42530943-42530962 None:intergenic 50.0%
CATGCATAGGGCCAATCAGT+TGG + chr3_4:42530945-42530964 None:intergenic 50.0%
! CAACTGATTGGCCCTATGCA+TGG - chr3_4:42530943-42530962 Msa0501400:intron 50.0%
!! CTTTGGTGCCTATGCCATGC+TGG + chr3_4:42525574-42525593 None:intergenic 55.0%
GCATGGCATAGGCACCAAAG+CGG - chr3_4:42525574-42525593 Msa0501400:three_prime_UTR 55.0%
GGGAAAAGAAGGGAGGTCGA+GGG - chr3_4:42525850-42525869 Msa0501400:three_prime_UTR 55.0%
ACGGGTACGGGAGAAAGAAG+GGG - chr3_4:42525891-42525910 Msa0501400:three_prime_UTR 55.0%
GAGGACTTCTGAGTCGCCTA+TGG - chr3_4:42527432-42527451 Msa0501400:intron 55.0%
CTGAGTCGCCTATGGAATCC+AGG - chr3_4:42527440-42527459 Msa0501400:intron 55.0%
TTTGCAGTCCAAGGCCACAG+CGG - chr3_4:42528213-42528232 Msa0501400:intron 55.0%
ATTCTGCGAGAAGGCCAGCA+TGG - chr3_4:42528686-42528705 Msa0501400:intron 55.0%
AAGGCCAGCATGGTGAGCAA+GGG - chr3_4:42528696-42528715 Msa0501400:intron 55.0%
CACTTCCTGTGAAGAGCCCA+TGG + chr3_4:42530272-42530291 None:intergenic 55.0%
CATGGGCTCTTCACAGGAAG+TGG - chr3_4:42530270-42530289 Msa0501400:intron 55.0%
GCATAGGGCCAATCAGTTGG+GGG + chr3_4:42530942-42530961 None:intergenic 55.0%
!! GACAAAGGACGGTGCCGCTT+TGG + chr3_4:42525591-42525610 None:intergenic 60.0%
CGGGAAAAGAAGGGAGGTCG+AGG - chr3_4:42525849-42525868 Msa0501400:three_prime_UTR 60.0%
CGGGTACGGGAGAAAGAAGG+GGG - chr3_4:42525892-42525911 Msa0501400:three_prime_UTR 60.0%
GGGTACGGGAGAAAGAAGGG+GGG - chr3_4:42525893-42525912 Msa0501400:three_prime_UTR 60.0%
GACTACAACCGCTGTGGCCT+TGG + chr3_4:42528224-42528243 None:intergenic 60.0%
GAAGGCCAGCATGGTGAGCA+AGG - chr3_4:42528695-42528714 Msa0501400:intron 60.0%
AGGCCAGCATGGTGAGCAAG+GGG - chr3_4:42528697-42528716 Msa0501400:intron 60.0%
TCACCCCTTGCTCACCATGC+TGG + chr3_4:42528703-42528722 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 42525398 42531266 42525398 ID=Msa0501400;Name=Msa0501400
chr3_4 mRNA 42525398 42531266 42525398 ID=Msa0501400-mRNA-1;Parent=Msa0501400;Name=Msa0501400-mRNA-1;_AED=0.27;_eAED=0.27;_QI=0|0.5|0.45|0.90|0.6|0.54|11|857|267
chr3_4 exon 42525398 42525936 42525398 ID=Msa0501400-mRNA-1:exon:8979;Parent=Msa0501400-mRNA-1
chr3_4 exon 42526010 42526402 42526010 ID=Msa0501400-mRNA-1:exon:8978;Parent=Msa0501400-mRNA-1
chr3_4 exon 42526703 42526783 42526703 ID=Msa0501400-mRNA-1:exon:8977;Parent=Msa0501400-mRNA-1
chr3_4 exon 42527643 42527759 42527643 ID=Msa0501400-mRNA-1:exon:8976;Parent=Msa0501400-mRNA-1
chr3_4 exon 42527957 42528052 42527957 ID=Msa0501400-mRNA-1:exon:8975;Parent=Msa0501400-mRNA-1
chr3_4 exon 42528379 42528444 42528379 ID=Msa0501400-mRNA-1:exon:8974;Parent=Msa0501400-mRNA-1
chr3_4 exon 42528803 42528877 42528803 ID=Msa0501400-mRNA-1:exon:8973;Parent=Msa0501400-mRNA-1
chr3_4 exon 42529238 42529309 42529238 ID=Msa0501400-mRNA-1:exon:8972;Parent=Msa0501400-mRNA-1
chr3_4 exon 42529472 42529614 42529472 ID=Msa0501400-mRNA-1:exon:8971;Parent=Msa0501400-mRNA-1
chr3_4 exon 42530305 42530377 42530305 ID=Msa0501400-mRNA-1:exon:8970;Parent=Msa0501400-mRNA-1
chr3_4 exon 42531261 42531266 42531261 ID=Msa0501400-mRNA-1:exon:8969;Parent=Msa0501400-mRNA-1
chr3_4 CDS 42531261 42531266 42531261 ID=Msa0501400-mRNA-1:cds;Parent=Msa0501400-mRNA-1
chr3_4 CDS 42530305 42530377 42530305 ID=Msa0501400-mRNA-1:cds;Parent=Msa0501400-mRNA-1
chr3_4 CDS 42529472 42529614 42529472 ID=Msa0501400-mRNA-1:cds;Parent=Msa0501400-mRNA-1
chr3_4 CDS 42529238 42529309 42529238 ID=Msa0501400-mRNA-1:cds;Parent=Msa0501400-mRNA-1
chr3_4 CDS 42528803 42528877 42528803 ID=Msa0501400-mRNA-1:cds;Parent=Msa0501400-mRNA-1
chr3_4 CDS 42528379 42528444 42528379 ID=Msa0501400-mRNA-1:cds;Parent=Msa0501400-mRNA-1
chr3_4 CDS 42527957 42528052 42527957 ID=Msa0501400-mRNA-1:cds;Parent=Msa0501400-mRNA-1
chr3_4 CDS 42527643 42527759 42527643 ID=Msa0501400-mRNA-1:cds;Parent=Msa0501400-mRNA-1
chr3_4 CDS 42526703 42526783 42526703 ID=Msa0501400-mRNA-1:cds;Parent=Msa0501400-mRNA-1
chr3_4 CDS 42526328 42526402 42526328 ID=Msa0501400-mRNA-1:cds;Parent=Msa0501400-mRNA-1
chr3_4 three_prime_UTR 42526010 42526327 42526010 ID=Msa0501400-mRNA-1:three_prime_utr;Parent=Msa0501400-mRNA-1
chr3_4 three_prime_UTR 42525398 42525936 42525398 ID=Msa0501400-mRNA-1:three_prime_utr;Parent=Msa0501400-mRNA-1
Gene Sequence

>Msa0501400

TTTAAAATTGATGCAGATGAGGAAAGAATTGATGCAGATGGAAAGAAGAAGGAAGAAGGGAATGCATTGTTCAAAGCTGGAAAGGGTGACTTCATATCTGATAAAGAGATAAAGTATGTTATATTGGGAGAGAAAGCTAAGGCTCAGTTGATTTGTGACTCAAAGAAAGACATTGCACTCAGTTTAACTGAAATACAAAAGAATCCTCTGAATTATACTCAGAAAACAAAGTTTACAAGTGGTACTGAATTAGTTTGTTTTAACGCTACAAAGTCATCGATAAACTCACGACAGGTTGTAATAAATGGAGCAGCAAAGGAGGTAGGAAGAGCAGCAGTATTAGCTGTGACAAAGGCCAGAGGAATGGAATCCAAGGCCACAGCGGTTGTAGTCGATTTCACTGACCCTTCTGCAGTATATGACAATGTAAAACAGGCAACAACATTTGGCATGAAAAGCGTTGTGTACATGCCGCGGATCAAATTGGATACGGTTGCAGCATTGTCTGCATTCTGCGAGAAGGCCAGCATGGGTGTCTTGGTTGCTCCAACGCTTTCCATAGGATCAATATTATTACAGCAGGCTGCAATTTCAGCTTCTTTCCATTACCGCAACGTCGAAATTGTGGAATCCAAGGCTAATGCAAATTACATGAACCTAAAGAAAACAAAGGATATCATCAATTTCACTGTTTCTTCTTACAACCTGCATCCTCGAAGGAGTTTAAAGGTTTCATCCATGGGCTCTTCACAGGAAGTGGAGATCAAAGCCTCACAAGAGAGACTCAAGGAATTTCAAACCTGA
Protein sequence

>Msa0501400

FKIDADEERIDADGKKKEEGNALFKAGKGDFISDKEIKYVILGEKAKAQLICDSKKDIALSLTEIQKNPLNYTQKTKFTSGTELVCFNATKSSINSRQVVINGAAKEVGRAAVLAVTKARGMESKATAVVVDFTDPSAVYDNVKQATTFGMKSVVYMPRIKLDTVAALSAFCEKASMGVLVAPTLSIGSILLQQAAISASFHYRNVEIVESKANANYMNLKKTKDIINFTVSSYNLHPRRSLKVSSMGSSQEVEIKASQERLKEFQT*