AlfalfaGEDB | Msa0501400

M. sativa cultivar zhongmu-4 / Msa0501400

KEGG: K16908
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0015979 GO:0019684 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0501400	GAU15466.1	71.429	161	29	2	72	216	15	174	3.65e-66	217

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0501400	sp\|Q9FJ82\|DAPB3_ARATH	56.213	169	33	1	88	215	25	193	2.10e-53	178

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0501400	G7IAQ3	60.000	205	40	2	66	228	7	211	4.64e-65	214

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0007020	Msa0501400	0.923288	3.236485e-89	-8.615850e-47
Msa0360070	Msa0501400	0.804494	2.102365e-49	-8.615850e-47
Msa0499510	Msa0501400	0.805581	1.245557e-49	-8.615850e-47
Msa0501400	Msa0747280	0.928183	4.136463e-92	-8.615850e-47
Msa0501400	Msa0768100	0.814720	1.334365e-51	-8.615850e-47
Msa0501400	Msa1012090	0.898366	5.693925e-77	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0501400	MtrunA17_Chr1g0203761	60.000	205	40	2	66	228	7	211	8.93e-69	214
Msa0501400	MtrunA17_Chr4g0073341	95.122	41	2	0	34	74	143	183	9.55e-18	81.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0501400	AT5G52100.1	56.213	169	33	1	88	215	25	193	2.13e-54	178
Msa0501400	AT2G33040.1	56.604	53	20	1	22	74	130	179	7.80e-11	62.0

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Find 107 sgRNAs with CRISPR-Local

Find 354 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAGATTGATGCAGATG+AGG	0.536126	3_4:-42530362	Msa0501400:intron
AAAGCGTTGTGTACATGCCG+CGG	0.666394	3_4:-42528011	Msa0501400:CDS
AACAGAAGATAGTTGATTAT+TGG	0.224941	3_4:-42526284	Msa0501400:three_prime_UTR
AACTGATTGGCCCTATGCAT+GGG	0.502435	3_4:-42525698	Msa0501400:three_prime_UTR
AAGGATGTGCAGCCTTATGA+GGG	0.571624	3_4:+42526147	None:intergenic
AATAAATGGAGCAGCAAAGG+AGG	0.611168	3_4:-42528850	Msa0501400:CDS
AATCAACTATCTTCTGTTAT+AGG	0.232152	3_4:+42526289	None:intergenic
AATGGAGCAGCAAAGGAGGT+AGG	0.602441	3_4:-42528846	Msa0501400:CDS
ACAAATAGTCTGCAATGAAA+AGG	0.479215	3_4:-42525542	Msa0501400:three_prime_UTR
ACATTGTCATATACTGCAGA+AGG	0.525891	3_4:+42528386	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAAGAAGGAAAACAGAA+CGG	-	chr3_4:42525800-42525819	Msa0501400:three_prime_UTR	30.0%
AAGCTTCAATTACTCAACAA+TGG	+	chr3_4:42526002-42526021	None:intergenic	30.0%
ACAGAAGTTAAAGAGAATCA+AGG	-	chr3_4:42526053-42526072	Msa0501400:three_prime_UTR	30.0%
CAAGTCTACATTCTGTTTAT+AGG	-	chr3_4:42526819-42526838	Msa0501400:intron	30.0%
ATGCTCCATGTATTAAACTT+TGG	-	chr3_4:42526859-42526878	Msa0501400:intron	30.0%
AGACACCAAAGTTTAATACA+TGG	+	chr3_4:42526867-42526886	None:intergenic	30.0%
AACCTTATGACATCTATACA+TGG	+	chr3_4:42526993-42527012	None:intergenic	30.0%
AACCATGTATAGATGTCATA+AGG	-	chr3_4:42527028-42527047	Msa0501400:intron	30.0%
TTCCTTATGACATCTATACA+TGG	+	chr3_4:42527033-42527052	None:intergenic	30.0%
TGTATAGATGTCATAAGGAA+AGG	-	chr3_4:42527033-42527052	Msa0501400:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	42525398	42531266	42525398	ID=Msa0501400;Name=Msa0501400
chr3_4	mRNA	42525398	42531266	42525398	ID=Msa0501400-mRNA-1;Parent=Msa0501400;Name=Msa0501400-mRNA-1;_AED=0.27;_eAED=0.27;_QI=0\|0.5\|0.45\|0.90\|0.6\|0.54\|11\|857\|267
chr3_4	exon	42525398	42525936	42525398	ID=Msa0501400-mRNA-1:exon:8979;Parent=Msa0501400-mRNA-1
chr3_4	exon	42526010	42526402	42526010	ID=Msa0501400-mRNA-1:exon:8978;Parent=Msa0501400-mRNA-1
chr3_4	exon	42526703	42526783	42526703	ID=Msa0501400-mRNA-1:exon:8977;Parent=Msa0501400-mRNA-1
chr3_4	exon	42527643	42527759	42527643	ID=Msa0501400-mRNA-1:exon:8976;Parent=Msa0501400-mRNA-1
chr3_4	exon	42527957	42528052	42527957	ID=Msa0501400-mRNA-1:exon:8975;Parent=Msa0501400-mRNA-1
chr3_4	exon	42528379	42528444	42528379	ID=Msa0501400-mRNA-1:exon:8974;Parent=Msa0501400-mRNA-1
chr3_4	exon	42528803	42528877	42528803	ID=Msa0501400-mRNA-1:exon:8973;Parent=Msa0501400-mRNA-1
chr3_4	exon	42529238	42529309	42529238	ID=Msa0501400-mRNA-1:exon:8972;Parent=Msa0501400-mRNA-1
chr3_4	exon	42529472	42529614	42529472	ID=Msa0501400-mRNA-1:exon:8971;Parent=Msa0501400-mRNA-1
chr3_4	exon	42530305	42530377	42530305	ID=Msa0501400-mRNA-1:exon:8970;Parent=Msa0501400-mRNA-1
chr3_4	exon	42531261	42531266	42531261	ID=Msa0501400-mRNA-1:exon:8969;Parent=Msa0501400-mRNA-1
chr3_4	CDS	42531261	42531266	42531261	ID=Msa0501400-mRNA-1:cds;Parent=Msa0501400-mRNA-1
chr3_4	CDS	42530305	42530377	42530305	ID=Msa0501400-mRNA-1:cds;Parent=Msa0501400-mRNA-1
chr3_4	CDS	42529472	42529614	42529472	ID=Msa0501400-mRNA-1:cds;Parent=Msa0501400-mRNA-1
chr3_4	CDS	42529238	42529309	42529238	ID=Msa0501400-mRNA-1:cds;Parent=Msa0501400-mRNA-1
chr3_4	CDS	42528803	42528877	42528803	ID=Msa0501400-mRNA-1:cds;Parent=Msa0501400-mRNA-1
chr3_4	CDS	42528379	42528444	42528379	ID=Msa0501400-mRNA-1:cds;Parent=Msa0501400-mRNA-1
chr3_4	CDS	42527957	42528052	42527957	ID=Msa0501400-mRNA-1:cds;Parent=Msa0501400-mRNA-1
chr3_4	CDS	42527643	42527759	42527643	ID=Msa0501400-mRNA-1:cds;Parent=Msa0501400-mRNA-1
chr3_4	CDS	42526703	42526783	42526703	ID=Msa0501400-mRNA-1:cds;Parent=Msa0501400-mRNA-1
chr3_4	CDS	42526328	42526402	42526328	ID=Msa0501400-mRNA-1:cds;Parent=Msa0501400-mRNA-1
chr3_4	three_prime_UTR	42526010	42526327	42526010	ID=Msa0501400-mRNA-1:three_prime_utr;Parent=Msa0501400-mRNA-1
chr3_4	three_prime_UTR	42525398	42525936	42525398	ID=Msa0501400-mRNA-1:three_prime_utr;Parent=Msa0501400-mRNA-1

Gene Sequence

>Msa0501400

TTTAAAATTGATGCAGATGAGGAAAGAATTGATGCAGATGGAAAGAAGAAGGAAGAAGGGAATGCATTGTTCAAAGCTGGAAAGGGTGACTTCATATCTGATAAAGAGATAAAGTATGTTATATTGGGAGAGAAAGCTAAGGCTCAGTTGATTTGTGACTCAAAGAAAGACATTGCACTCAGTTTAACTGAAATACAAAAGAATCCTCTGAATTATACTCAGAAAACAAAGTTTACAAGTGGTACTGAATTAGTTTGTTTTAACGCTACAAAGTCATCGATAAACTCACGACAGGTTGTAATAAATGGAGCAGCAAAGGAGGTAGGAAGAGCAGCAGTATTAGCTGTGACAAAGGCCAGAGGAATGGAATCCAAGGCCACAGCGGTTGTAGTCGATTTCACTGACCCTTCTGCAGTATATGACAATGTAAAACAGGCAACAACATTTGGCATGAAAAGCGTTGTGTACATGCCGCGGATCAAATTGGATACGGTTGCAGCATTGTCTGCATTCTGCGAGAAGGCCAGCATGGGTGTCTTGGTTGCTCCAACGCTTTCCATAGGATCAATATTATTACAGCAGGCTGCAATTTCAGCTTCTTTCCATTACCGCAACGTCGAAATTGTGGAATCCAAGGCTAATGCAAATTACATGAACCTAAAGAAAACAAAGGATATCATCAATTTCACTGTTTCTTCTTACAACCTGCATCCTCGAAGGAGTTTAAAGGTTTCATCCATGGGCTCTTCACAGGAAGTGGAGATCAAAGCCTCACAAGAGAGACTCAAGGAATTTCAAACCTGA

Protein sequence

>Msa0501400

FKIDADEERIDADGKKKEEGNALFKAGKGDFISDKEIKYVILGEKAKAQLICDSKKDIALSLTEIQKNPLNYTQKTKFTSGTELVCFNATKSSINSRQVVINGAAKEVGRAAVLAVTKARGMESKATAVVVDFTDPSAVYDNVKQATTFGMKSVVYMPRIKLDTVAALSAFCEKASMGVLVAPTLSIGSILLQQAAISASFHYRNVEIVESKANANYMNLKKTKDIINFTVSSYNLHPRRSLKVSSMGSSQEVEIKASQERLKEFQT*