Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0747280 | ACJ85072.1 | 55.975 | 159 | 26 | 3 | 139 | 254 | 7 | 164 | 3.80e-38 | 145 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0747280 | sp|Q9FJ82|DAPB3_ARATH | 41.489 | 188 | 62 | 2 | 161 | 300 | 25 | 212 | 7.42e-30 | 119 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0747280 | B7FJZ3 | 55.975 | 159 | 26 | 3 | 139 | 254 | 7 | 164 | 1.81e-38 | 145 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007020 | Msa0747280 | 0.843563 | 1.297605e-58 | -8.615850e-47 |
| Msa0747280 | Msa0768100 | 0.853145 | 2.899944e-61 | -8.615850e-47 |
| Msa0747280 | Msa1012090 | 0.889394 | 2.519142e-73 | -8.615850e-47 |
| Msa0360070 | Msa0747280 | 0.828706 | 7.743647e-55 | -8.615850e-47 |
| Msa0499510 | Msa0747280 | 0.826069 | 3.320767e-54 | -8.615850e-47 |
| Msa0501400 | Msa0747280 | 0.928183 | 4.136463e-92 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0747280 | MtrunA17_Chr1g0203761 | 48.404 | 188 | 46 | 4 | 139 | 276 | 7 | 193 | 7.77e-39 | 140 |
| Msa0747280 | MtrunA17_Chr2g0325911 | 45.528 | 123 | 38 | 4 | 252 | 348 | 221 | 340 | 9.18e-22 | 96.3 |
| Msa0747280 | MtrunA17_Chr4g0073341 | 92.683 | 41 | 3 | 0 | 107 | 147 | 143 | 183 | 3.59e-16 | 79.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0747280 | AT5G52100.1 | 41.489 | 188 | 62 | 2 | 161 | 300 | 25 | 212 | 7.54e-31 | 119 |
Find 103 sgRNAs with CRISPR-Local
Find 332 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACTAACTTTGATCTGAATT+TGG | 0.097622 | 5_1:+70948062 | Msa0747280:CDS |
| AGTAAAGGAAAGATAATAAT+AGG | 0.187247 | 5_1:+70949230 | Msa0747280:three_prime_UTR |
| GTGGAACAGGTTGTAATAAA+TGG | 0.207909 | 5_1:+70946003 | Msa0747280:intron |
| CACGATTTGGATTTGAGTTT+GGG | 0.272951 | 5_1:+70944791 | Msa0747280:CDS |
| AGAGATAAAGTATGTTATAT+TGG | 0.274675 | 5_1:+70945301 | Msa0747280:CDS |
| TCACGATTTGGATTTGAGTT+TGG | 0.276796 | 5_1:+70944790 | Msa0747280:CDS |
| GTTTGGGAAATTCAAGTTCT+AGG | 0.285239 | 5_1:+70944807 | Msa0747280:CDS |
| CAATTTCGACGTTGCGGTAA+TGG | 0.296694 | 5_1:-70947197 | Msa0747290:intron |
| TTATGATAGGCAATCCTATC+TGG | 0.308805 | 5_1:-70949257 | Msa0747290:intron |
| GAGCTATTTGCAAGGCTATA+TGG | 0.309109 | 5_1:-70949085 | Msa0747290:intron |
| CACTGATACAAGAGCCTTGA+TGG | 0.321757 | 5_1:+70948980 | Msa0747280:CDS |
| ACTAACTTTGATCTGAATTT+GGG | 0.334405 | 5_1:+70948063 | Msa0747280:CDS |
| TATGATAATGAACTTAATTC+TGG | 0.336630 | 5_1:+70944653 | Msa0747280:CDS |
| AGAAGAGAGGTGAGAAGAAC+GGG | 0.338133 | 5_1:+70943684 | Msa0747280:CDS |
| GTACATGCCGCGGATCAAAT+TGG | 0.350196 | 5_1:+70946866 | Msa0747280:CDS |
| GACTACAACCGCTGTGGCCT+TGG | 0.364137 | 5_1:-70946446 | None:intergenic |
| ATATGGTATAAGTATTTAAT+CGG | 0.365194 | 5_1:-70949068 | Msa0747290:intron |
| TAATAATAGGGTTTCCAGAT+AGG | 0.365703 | 5_1:+70949243 | Msa0747280:three_prime_UTR |
| ACTATATAGGCAACAGCATT+TGG | 0.384690 | 5_1:+70946828 | Msa0747280:intron |
| GAGATAAAGTATGTTATATT+GGG | 0.394913 | 5_1:+70945302 | Msa0747280:CDS |
| TGAGAAGAACGGGAAAATAA+AGG | 0.398676 | 5_1:+70943694 | Msa0747280:CDS |
| ATGCATAGGGCCAATCAGTT+GGG | 0.408330 | 5_1:-70949163 | Msa0747290:intron |
| GAGATGAGAAGAAGAGGAAA+CGG | 0.410173 | 5_1:+70943726 | Msa0747280:CDS |
| TAATGCTGCAGATCACGATT+TGG | 0.415240 | 5_1:+70944778 | Msa0747280:CDS |
| TCACCCCTTGCTCACCATGC+TGG | 0.433731 | 5_1:-70946925 | Msa0747290:CDS |
| AGTATATGACAATGTAAAAC+AGG | 0.435138 | 5_1:+70946489 | Msa0747280:CDS |
| GTAAAGGAAAGATAATAATA+GGG | 0.442334 | 5_1:+70949231 | Msa0747280:three_prime_UTR |
| AAGAAGAGAGGTGAGAAGAA+CGG | 0.444699 | 5_1:+70943683 | Msa0747280:CDS |
| GAGAATGCATTGTTCAAAGT+TGG | 0.448694 | 5_1:+70944204 | Msa0747280:CDS |
| TATACCTTTAAAATCCTTCG+AGG | 0.449585 | 5_1:-70948165 | Msa0747290:intron |
| TTGCAGACTATTTGTAAGCC+AGG | 0.450460 | 5_1:-70949314 | Msa0747290:intron |
| TCTTACATTTGCATTAGCCT+TGG | 0.452314 | 5_1:-70947226 | Msa0747290:intron |
| GCAAATTATTATAAGAGTAA+AGG | 0.452896 | 5_1:+70949215 | Msa0747280:three_prime_UTR |
| ATAACAAACGAAATATTTGA+TGG | 0.458452 | 5_1:+70949116 | Msa0747280:three_prime_UTR |
| GAATCCTCTGAATTATAATC+AGG | 0.461369 | 5_1:+70945397 | Msa0747280:CDS |
| TTTGGGAAATTCAAGTTCTA+GGG | 0.471258 | 5_1:+70944808 | Msa0747280:CDS |
| TTAAAATCCTTCGAGGATGC+AGG | 0.472197 | 5_1:-70948158 | Msa0747290:intron |
| TCCAGAAACTTCCATTCCTC+TGG | 0.475788 | 5_1:-70946073 | None:intergenic |
| GAAATATTTGATGGTGCTAA+AGG | 0.477207 | 5_1:+70949125 | Msa0747280:three_prime_UTR |
| ATAGCCTCTTCACTTAGGCT+TGG | 0.478230 | 5_1:-70948836 | Msa0747290:intron |
| ACAAATAGTCTGCAATGAAA+AGG | 0.479215 | 5_1:+70949322 | Msa0747280:three_prime_UTR |
| CTTGCATAGCCTCTTCACTT+AGG | 0.480071 | 5_1:-70948841 | Msa0747290:intron |
| ATCATGTATCTCCTTATGAT+AGG | 0.485561 | 5_1:-70949270 | Msa0747290:intron |
| AGATAGGATTGCCTATCATA+AGG | 0.496987 | 5_1:+70949259 | Msa0747280:three_prime_UTR |
| ATGATACATGATATTAGAAA+AGG | 0.502189 | 5_1:+70949288 | Msa0747280:three_prime_UTR |
| AACTGATTGGCCCTATGCAT+GGG | 0.502435 | 5_1:+70949166 | Msa0747280:three_prime_UTR |
| TGGAGTTCAAAGCTGGAGTA+AGG | 0.503066 | 5_1:+70949000 | Msa0747280:CDS |
| TCGAGGGAGATGAGAAGAAG+AGG | 0.505017 | 5_1:+70943720 | Msa0747280:CDS |
| TGATGCAGATGGAAAGAAGA+AGG | 0.510322 | 5_1:+70944176 | Msa0747280:CDS |
| CAACTGATTGGCCCTATGCA+TGG | 0.512282 | 5_1:+70949165 | Msa0747280:three_prime_UTR |
| TTTAACTTCTTCAGATTCAG+TGG | 0.515006 | 5_1:+70948783 | Msa0747280:intron |
| CTTTGATCTGAATTTGGGCA+TGG | 0.516010 | 5_1:+70948068 | Msa0747280:CDS |
| GCCTTGATGGAGTTCAAAGC+TGG | 0.517462 | 5_1:+70948993 | Msa0747280:CDS |
| CGGGAAAATAAAGGAGGTCG+AGG | 0.518385 | 5_1:+70943703 | Msa0747280:CDS |
| TTACCGCAACGTCGAAATTG+TGG | 0.519053 | 5_1:+70947200 | Msa0747280:CDS |
| AGATGAGAAGAAGAGGAAAC+GGG | 0.525399 | 5_1:+70943727 | Msa0747280:CDS |
| ACATTGTCATATACTGCAGA+AGG | 0.525891 | 5_1:-70946481 | None:intergenic |
| CATGCATAGGGCCAATCAGT+TGG | 0.529277 | 5_1:-70949164 | Msa0747290:intron |
| TATATGAGAAACTATGAACT+TGG | 0.533433 | 5_1:+70949376 | Msa0747280:three_prime_UTR |
| GAAGGCCAGCATGGTGAGCA+AGG | 0.533522 | 5_1:+70946920 | Msa0747280:CDS |
| AAAGAAGATTGATGCAGATG+AGG | 0.536126 | 5_1:+70944146 | Msa0747280:intron |
| TATTAAATGACAGAATCATC+AGG | 0.536179 | 5_1:+70944755 | Msa0747280:intron |
| TCCAGCTTTGAACTCCATCA+AGG | 0.536851 | 5_1:-70948994 | Msa0747290:intron |
| GAGGAAAGAATTGATGCAGA+TGG | 0.541097 | 5_1:+70944165 | Msa0747280:CDS |
| AAGGCCAGCATGGTGAGCAA+GGG | 0.543494 | 5_1:+70946921 | Msa0747280:CDS |
| TGTAATAAATGGAGCAGCAA+AGG | 0.543811 | 5_1:+70946014 | Msa0747280:CDS |
| TCTAAAATGCAAGGGAAGAG+AGG | 0.545819 | 5_1:+70948035 | Msa0747280:CDS |
| CGTCGAAATTGTGGAATCCA+AGG | 0.546529 | 5_1:+70947209 | Msa0747280:CDS |
| AGCAGTATTAGCTGTGACAA+AGG | 0.549949 | 5_1:+70946050 | Msa0747280:CDS |
| TGCAGACTATTTGTAAGCCA+GGG | 0.558908 | 5_1:-70949313 | Msa0747290:intron |
| TGCATAGGGCCAATCAGTTG+GGG | 0.559790 | 5_1:-70949162 | Msa0747290:intron |
| TGCTCCAAGCCTAAGTGAAG+AGG | 0.559997 | 5_1:+70948832 | Msa0747280:CDS |
| CAAAGCAGCTCTAAAATGCA+AGG | 0.560883 | 5_1:+70948026 | Msa0747280:CDS |
| CTAACCTGATTATAATTCAG+AGG | 0.572582 | 5_1:-70945401 | None:intergenic |
| TGATATTAGAAAAGGATCCC+TGG | 0.578018 | 5_1:+70949296 | Msa0747280:three_prime_UTR |
| GACAAAATACAATTACTATG+AGG | 0.578080 | 5_1:+70949188 | Msa0747280:three_prime_UTR |
| GCCGCGGATCAAATTGGATA+CGG | 0.582539 | 5_1:+70946872 | Msa0747280:CDS |
| GTCATCGATAAACTCACGAC+AGG | 0.586511 | 5_1:+70945630 | Msa0747280:CDS |
| TGTGACAAAGGCCAGAGGAA+TGG | 0.593244 | 5_1:+70946062 | Msa0747280:CDS |
| TAGAAAACAAAGTTTACAAG+TGG | 0.593903 | 5_1:+70945577 | Msa0747280:intron |
| CTGTCATTGAGCTATTTGCA+AGG | 0.595983 | 5_1:-70949093 | Msa0747290:intron |
| CAGATTCAGTGGAATCTGCA+AGG | 0.597912 | 5_1:+70948794 | Msa0747280:intron |
| CAAGACTTTCAATATATGCA+TGG | 0.601988 | 5_1:+70949465 | Msa0747280:three_prime_UTR |
| AATGGAGCAGCAAAGGAGGT+AGG | 0.602441 | 5_1:+70946021 | Msa0747280:CDS |
| CTTACAACCTGCATCCTCGA+AGG | 0.604117 | 5_1:+70948151 | Msa0747280:CDS |
| AATAAATGGAGCAGCAAAGG+AGG | 0.611168 | 5_1:+70946017 | Msa0747280:CDS |
| ATTGTCTGCATTCTGTGAGA+AGG | 0.615005 | 5_1:+70946902 | Msa0747280:CDS |
| AGGCCAGCATGGTGAGCAAG+GGG | 0.616804 | 5_1:+70946922 | Msa0747280:CDS |
| GAACGGACAGAGAAGAAGAG+AGG | 0.626046 | 5_1:+70943671 | None:intergenic |
| ATTCCACAATTTCGACGTTG+CGG | 0.630579 | 5_1:-70947203 | Msa0747290:intron |
| ACCGTATCCAATTTGATCCG+CGG | 0.631428 | 5_1:-70946873 | Msa0747290:CDS |
| CATTGTCATATACTGCAGAA+GGG | 0.632959 | 5_1:-70946480 | None:intergenic |
| AAAGCAGCTCTAAAATGCAA+GGG | 0.646780 | 5_1:+70948027 | Msa0747280:CDS |
| CGTGAACCTAAAGAAAACAA+AGG | 0.650018 | 5_1:+70948102 | Msa0747280:CDS |
| AAAGCGTCGTGTACATGCCG+CGG | 0.666394 | 5_1:+70946856 | Msa0747280:CDS |
| TATATTGGGAGAGAAAGCTA+AGG | 0.687081 | 5_1:+70945316 | Msa0747280:CDS |
| ATTCTGTGAGAAGGCCAGCA+TGG | 0.689417 | 5_1:+70946911 | Msa0747280:CDS |
| GGGAAAATAAAGGAGGTCGA+GGG | 0.698338 | 5_1:+70943704 | Msa0747280:CDS |
| GCATAGGGCCAATCAGTTGG+GGG | 0.712704 | 5_1:-70949161 | Msa0747290:intron |
| TTTGCAGTCCAAGGCCACAG+CGG | 0.725554 | 5_1:+70946438 | Msa0747280:intron |
| GAAGAACGGGAAAATAAAGG+AGG | 0.726930 | 5_1:+70943697 | Msa0747280:CDS |
| TTAGCTGTGACAAAGGCCAG+AGG | 0.735270 | 5_1:+70946057 | Msa0747280:CDS |
| GAAATCGACTACAACCGCTG+TGG | 0.746133 | 5_1:-70946452 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTGATGTAAAAAATAAAT+GGG | + | chr5_1:70944332-70944351 | Msa0747280:intron | 10.0% |
| !!! | AAATTGTTTTATTGATTTTA+AGG | + | chr5_1:70944489-70944508 | Msa0747280:intron | 10.0% |
| !!! | AATTGTTTTATTGATTTTAA+GGG | + | chr5_1:70944490-70944509 | Msa0747280:intron | 10.0% |
| !! | AATGCAATTAATTATTAATT+AGG | - | chr5_1:70944736-70944755 | None:intergenic | 10.0% |
| !!! | ATAATATGATGATATTTTAT+AGG | - | chr5_1:70949348-70949367 | Msa0747290:intron | 10.0% |
| !!! | TTCAATTTTCGTTTTTTATT+TGG | + | chr5_1:70943954-70943973 | Msa0747280:intron | 15.0% |
| !! | GAATTGATGTAAAAAATAAA+TGG | + | chr5_1:70944331-70944350 | Msa0747280:intron | 15.0% |
| !!! | AAATCAATAAAACAATTTTC+TGG | - | chr5_1:70944487-70944506 | None:intergenic | 15.0% |
| !! | AATAACATAGTAAATTATGA+TGG | - | chr5_1:70948273-70948292 | Msa0747290:intron | 15.0% |
| !!! | CAAGTAAAATATTTAAGTTA+TGG | + | chr5_1:70948342-70948361 | Msa0747280:intron | 15.0% |
| !! | ATATGGTATAAGTATTTAAT+CGG | - | chr5_1:70949071-70949090 | Msa0747290:intron | 15.0% |
| !!! | TTAATTGATGTTTTTTTTCC+TGG | + | chr5_1:70944070-70944089 | Msa0747280:intron | 20.0% |
| !!! | ATGTAAAAAATAAATGGGTT+GGG | + | chr5_1:70944337-70944356 | Msa0747280:intron | 20.0% |
| !! | CAATAACAATACTAATTACT+TGG | + | chr5_1:70944393-70944412 | Msa0747280:intron | 20.0% |
| !!! | AAATTCTGGAAAAACATTTT+TGG | - | chr5_1:70944428-70944447 | None:intergenic | 20.0% |
| !!! | GTTTTTCCAGAATTTTTTTT+TGG | + | chr5_1:70944433-70944452 | Msa0747280:intron | 20.0% |
| !!! | AAGGGTTTGATTTTTTTATT+AGG | + | chr5_1:70944508-70944527 | Msa0747280:intron | 20.0% |
| !!! | AGGGTTTGATTTTTTTATTA+GGG | + | chr5_1:70944509-70944528 | Msa0747280:intron | 20.0% |
| !!! | TTGTTTTGATTTTAAGAGAA+AGG | + | chr5_1:70944534-70944553 | Msa0747280:intron | 20.0% |
| !!! | TATGATAATGAACTTAATTC+TGG | + | chr5_1:70944653-70944672 | Msa0747280:CDS | 20.0% |
| !!! | TTTTATAGTTTAGAGTTGAT+TGG | + | chr5_1:70944839-70944858 | Msa0747280:CDS | 20.0% |
| !! | AGAGATAAAGTATGTTATAT+TGG | + | chr5_1:70945301-70945320 | Msa0747280:CDS | 20.0% |
| !! | GAGATAAAGTATGTTATATT+GGG | + | chr5_1:70945302-70945321 | Msa0747280:CDS | 20.0% |
| !! | TCCTAAATTAAATTGTTTCA+AGG | + | chr5_1:70945475-70945494 | Msa0747280:intron | 20.0% |
| !!! | TCCTTGAAACAATTTAATTT+AGG | - | chr5_1:70945479-70945498 | None:intergenic | 20.0% |
| !! | ATATAAGCACTTAATTAACA+TGG | + | chr5_1:70946220-70946239 | Msa0747280:intron | 20.0% |
| !! | CTACAGGAAAATAAAAAATT+AGG | - | chr5_1:70946246-70946265 | None:intergenic | 20.0% |
| !! | AAGTTGAAGTGTAAATTAAA+TGG | + | chr5_1:70946564-70946583 | Msa0747280:intron | 20.0% |
| !!! | GTTTTTAAAGCAATTTTTCA+TGG | + | chr5_1:70946671-70946690 | Msa0747280:intron | 20.0% |
| !!! | ACAAACATTCATATTTTAAG+TGG | - | chr5_1:70947287-70947306 | Msa0747290:intron | 20.0% |
| !! | TTAAAATATGAATGTTTGTC+CGG | + | chr5_1:70947288-70947307 | Msa0747280:intron | 20.0% |
| !! | ATTTCAAAAAAACCTAATGT+CGG | + | chr5_1:70947524-70947543 | Msa0747280:intron | 20.0% |
| !!! | AGATTTCTTAGATTTTCTAT+AGG | + | chr5_1:70947584-70947603 | Msa0747280:intron | 20.0% |
| !! | ATATTTGAATTAATGCCATT+TGG | - | chr5_1:70948372-70948391 | Msa0747290:intron | 20.0% |
| !! | CATAGTAATAAAAAATAGCA+TGG | - | chr5_1:70948425-70948444 | Msa0747290:intron | 20.0% |
| !! | ATAACAAACGAAATATTTGA+TGG | + | chr5_1:70949116-70949135 | Msa0747280:three_prime_UTR | 20.0% |
| !! | GCAAATTATTATAAGAGTAA+AGG | + | chr5_1:70949215-70949234 | Msa0747280:three_prime_UTR | 20.0% |
| !! | AGTAAAGGAAAGATAATAAT+AGG | + | chr5_1:70949230-70949249 | Msa0747280:three_prime_UTR | 20.0% |
| !! | GTAAAGGAAAGATAATAATA+GGG | + | chr5_1:70949231-70949250 | Msa0747280:three_prime_UTR | 20.0% |
| !! | ATGATACATGATATTAGAAA+AGG | + | chr5_1:70949288-70949307 | Msa0747280:three_prime_UTR | 20.0% |
| !!! | AAACAAAAAAAGGGTATTTG+TGG | - | chr5_1:70943985-70944004 | None:intergenic | 25.0% |
| !!! | ATACCCTTTTTTTGTTTGAT+TGG | + | chr5_1:70943988-70944007 | Msa0747280:intron | 25.0% |
| !!! | TACCCTTTTTTTGTTTGATT+GGG | + | chr5_1:70943989-70944008 | Msa0747280:intron | 25.0% |
| ! | AACCCAATCAAACAAAAAAA+GGG | - | chr5_1:70943994-70944013 | None:intergenic | 25.0% |
| ! | AAACCCAATCAAACAAAAAA+AGG | - | chr5_1:70943995-70944014 | None:intergenic | 25.0% |
| !!! | AATCGATGGTTTTTTTTTTG+TGG | + | chr5_1:70944102-70944121 | Msa0747280:intron | 25.0% |
| !!! | ATCGATGGTTTTTTTTTTGT+GGG | + | chr5_1:70944103-70944122 | Msa0747280:intron | 25.0% |
| ! | GATGTAAAAAATAAATGGGT+TGG | + | chr5_1:70944336-70944355 | Msa0747280:intron | 25.0% |
| ! | TCGAAACCAAAAAAAAATTC+TGG | - | chr5_1:70944442-70944461 | None:intergenic | 25.0% |
| !!! | GAATTTTTTTTTGGTTTCGA+TGG | + | chr5_1:70944442-70944461 | Msa0747280:intron | 25.0% |
| !!! | TGTTGTGTCTTTATTTTAGA+AGG | + | chr5_1:70944577-70944596 | Msa0747280:intron | 25.0% |
| ! | AACCTCTAATTTCTTTAATC+AGG | + | chr5_1:70944619-70944638 | Msa0747280:intron | 25.0% |
| ! | TACCTGATTAAAGAAATTAG+AGG | - | chr5_1:70944624-70944643 | None:intergenic | 25.0% |
| ! | TATTAAATGACAGAATCATC+AGG | + | chr5_1:70944755-70944774 | Msa0747280:intron | 25.0% |
| ! | TCTTATACTGCAATACTAAA+TGG | + | chr5_1:70945167-70945186 | Msa0747280:intron | 25.0% |
| ! | CTAGATATATGTAAAACACA+AGG | - | chr5_1:70945443-70945462 | None:intergenic | 25.0% |
| ! | TCAAGGAATATTGCAAAATA+TGG | + | chr5_1:70945492-70945511 | Msa0747280:intron | 25.0% |
| ! | CTAGATATAAGTAAAACACA+AGG | - | chr5_1:70945560-70945579 | None:intergenic | 25.0% |
| ! | TAGAAAACAAAGTTTACAAG+TGG | + | chr5_1:70945577-70945596 | Msa0747280:intron | 25.0% |
| ! | ATAAAAATGAACAAAAGCAG+AGG | - | chr5_1:70945702-70945721 | None:intergenic | 25.0% |
| ! | TTTAGTATAGGTATTTCAAG+AGG | - | chr5_1:70946287-70946306 | None:intergenic | 25.0% |
| ! | ATAGTAAGGTCATTTAGTAT+AGG | - | chr5_1:70946299-70946318 | None:intergenic | 25.0% |
| ! | TATACTAAATGACCTTACTA+TGG | + | chr5_1:70946298-70946317 | Msa0747280:intron | 25.0% |
| ! | TGAATTAGCAATAACAAACT+TGG | + | chr5_1:70946355-70946374 | Msa0747280:intron | 25.0% |
| ! | AGTATATGACAATGTAAAAC+AGG | + | chr5_1:70946489-70946508 | Msa0747280:CDS | 25.0% |
| ! | CTTCAACTTAAATGCATATT+TGG | - | chr5_1:70946553-70946572 | None:intergenic | 25.0% |
| ! | AGTGTAAATTAAATGGTTCT+TGG | + | chr5_1:70946571-70946590 | Msa0747280:intron | 25.0% |
| ! | CATAATATAGTCTTCAATCT+TGG | - | chr5_1:70946732-70946751 | None:intergenic | 25.0% |
| !! | TTGTTTCTTCTTCACTATAT+AGG | + | chr5_1:70946815-70946834 | Msa0747280:intron | 25.0% |
| !!! | CTAAACCATTTGTTCTTTTT+TGG | + | chr5_1:70947084-70947103 | Msa0747280:intron | 25.0% |
| ! | AAATGCCAAAAAAGAACAAA+TGG | - | chr5_1:70947092-70947111 | Msa0747290:intron | 25.0% |
| !!! | ATTTGTTCTTTTTTGGCATT+TGG | + | chr5_1:70947091-70947110 | Msa0747280:intron | 25.0% |
| ! | CTGTAATAATATTGATCCTA+TGG | - | chr5_1:70947154-70947173 | Msa0747290:intron | 25.0% |
| !!! | ATAGCTAAGCCATTTTTTAA+AGG | + | chr5_1:70947849-70947868 | Msa0747280:intron | 25.0% |
| ! | ACTAACTTTGATCTGAATTT+GGG | + | chr5_1:70948063-70948082 | Msa0747280:CDS | 25.0% |
| !!! | TGATATCCTTTGTTTTCTTT+AGG | - | chr5_1:70948111-70948130 | Msa0747290:intron | 25.0% |
| ! | ATGCAAATTTACTTCAATAC+TGG | - | chr5_1:70948320-70948339 | Msa0747290:intron | 25.0% |
| ! | TTAAGTTATGGAAAACCAAA+TGG | + | chr5_1:70948354-70948373 | Msa0747280:intron | 25.0% |
| ! | GTTATCTTTAAACTTATTCC+AGG | + | chr5_1:70948461-70948480 | Msa0747280:intron | 25.0% |
| ! | AATCAACTATCTTCTGTTAT+AGG | - | chr5_1:70948577-70948596 | Msa0747290:intron | 25.0% |
| ! | AACAGAAGATAGTTGATTAT+TGG | + | chr5_1:70948579-70948598 | Msa0747280:intron | 25.0% |
| ! | GACAAAATACAATTACTATG+AGG | + | chr5_1:70949188-70949207 | Msa0747280:three_prime_UTR | 25.0% |
| ! | TATATGAGAAACTATGAACT+TGG | + | chr5_1:70949376-70949395 | Msa0747280:three_prime_UTR | 25.0% |
| AAGCTTCAATTACTCAACAA+TGG | - | chr5_1:70943856-70943875 | None:intergenic | 30.0% | |
| !!! | GTTTTTTTTTTGTGGGTTTC+TGG | + | chr5_1:70944110-70944129 | Msa0747280:intron | 30.0% |
| ! | TTTGGGAAATTCAAGTTCTA+GGG | + | chr5_1:70944808-70944827 | Msa0747280:CDS | 30.0% |
| ! | TAGTTTAGAGTTGATTGGTT+TGG | + | chr5_1:70944844-70944863 | Msa0747280:intron | 30.0% |
| !! | AGTTTAGAGTTGATTGGTTT+GGG | + | chr5_1:70944845-70944864 | Msa0747280:intron | 30.0% |
| CAAGTCTACATTCTGTTTAT+AGG | + | chr5_1:70945035-70945054 | Msa0747280:intron | 30.0% | |
| AGACACCAAAGTTTAATACA+CGG | - | chr5_1:70945083-70945102 | None:intergenic | 30.0% | |
| AACCATGTATAGATGTCATA+AGG | + | chr5_1:70945214-70945233 | Msa0747280:intron | 30.0% | |
| AACCTTATGACATCTATACA+TGG | - | chr5_1:70945219-70945238 | None:intergenic | 30.0% | |
| AACCATGTATAGATGTCATA+AGG | + | chr5_1:70945214-70945233 | Msa0747280:intron | 30.0% | |
| TTCCTTATGACATCTATACA+TGG | - | chr5_1:70945259-70945278 | None:intergenic | 30.0% | |
| TGTATAGATGTCATAAGGAA+AGG | + | chr5_1:70945259-70945278 | Msa0747280:intron | 30.0% | |
| GTATAGATGTCATAAGGAAA+GGG | + | chr5_1:70945260-70945279 | Msa0747280:intron | 30.0% | |
| GAATCCTCTGAATTATAATC+AGG | + | chr5_1:70945397-70945416 | Msa0747280:CDS | 30.0% | |
| CTAACCTGATTATAATTCAG+AGG | - | chr5_1:70945404-70945423 | None:intergenic | 30.0% | |
| TTCTGTACTAAAGTTCAACA+TGG | - | chr5_1:70945872-70945891 | None:intergenic | 30.0% | |
| ! | TGTTGTTTGTAATGTGAAGA+TGG | + | chr5_1:70945911-70945930 | Msa0747280:intron | 30.0% |
| CTATTGATACTCAACATGTT+GGG | + | chr5_1:70946097-70946116 | Msa0747280:intron | 30.0% | |
| TATTGATACTCAACATGTTG+GGG | + | chr5_1:70946098-70946117 | Msa0747280:intron | 30.0% | |
| ! | ATATTGGACAGGTTTTTCTT+TGG | + | chr5_1:70946124-70946143 | Msa0747280:intron | 30.0% |
| ! | TATTGGACAGGTTTTTCTTT+GGG | + | chr5_1:70946125-70946144 | Msa0747280:intron | 30.0% |
| !! | TTTTTCTTTGGGAGAGATTA+TGG | + | chr5_1:70946136-70946155 | Msa0747280:intron | 30.0% |
| !! | TTTATTTTCCTGTAGCTTTG+TGG | + | chr5_1:70946251-70946270 | Msa0747280:intron | 30.0% |
| ! | AAATGACCTTACTATGGTTT+TGG | + | chr5_1:70946304-70946323 | Msa0747280:intron | 30.0% |
| ! | AATGACCTTACTATGGTTTT+GGG | + | chr5_1:70946305-70946324 | Msa0747280:intron | 30.0% |
| ATTTCACATTACCTGAGATA+TGG | - | chr5_1:70946333-70946352 | None:intergenic | 30.0% | |
| TGTAAAACAGGTTTGAATTC+TGG | + | chr5_1:70946501-70946520 | Msa0747280:intron | 30.0% | |
| AAGACTGAGAGTTTATTTAG+TGG | + | chr5_1:70946596-70946615 | Msa0747280:intron | 30.0% | |
| AGACTGAGAGTTTATTTAGT+GGG | + | chr5_1:70946597-70946616 | Msa0747280:intron | 30.0% | |
| GATTCTTAATTAGCTAGCAA+TGG | + | chr5_1:70946619-70946638 | Msa0747280:intron | 30.0% | |
| ! | AAGCAATTTTTCATGGCTAA+AGG | + | chr5_1:70946678-70946697 | Msa0747280:intron | 30.0% |
| ! | TGTAGAATTATGCTGTGTTT+TGG | + | chr5_1:70946775-70946794 | Msa0747280:intron | 30.0% |
| AGTGAAGAAGAAACAATCAA+TGG | - | chr5_1:70946811-70946830 | Msa0747290:CDS | 30.0% | |
| TAGAGTATGAAATAACTGCA+CGG | - | chr5_1:70947031-70947050 | Msa0747290:intron | 30.0% | |
| AGGATCAATATTATTACAGC+AGG | + | chr5_1:70947155-70947174 | Msa0747280:intron | 30.0% | |
| GTTGTACTTGACAAATTAGA+AGG | - | chr5_1:70947367-70947386 | Msa0747290:intron | 30.0% | |
| TAGAGAAATTACACATTTCC+TGG | + | chr5_1:70947491-70947510 | Msa0747280:intron | 30.0% | |
| TCTAAGAAATCTCTTTACCA+TGG | - | chr5_1:70947576-70947595 | Msa0747290:intron | 30.0% | |
| TATGTCCATCATCTAATGTA+TGG | + | chr5_1:70947630-70947649 | Msa0747280:intron | 30.0% | |
| ATGTCCATCATCTAATGTAT+GGG | + | chr5_1:70947631-70947650 | Msa0747280:intron | 30.0% | |
| ACACAATGAAACAAATCAGA+AGG | - | chr5_1:70947675-70947694 | Msa0747290:intron | 30.0% | |
| TTTGTTTCATTGTGTTCTTC+AGG | + | chr5_1:70947680-70947699 | Msa0747280:intron | 30.0% | |
| TAAATTTGCAACTGTATCAG+AGG | - | chr5_1:70947741-70947760 | Msa0747290:intron | 30.0% | |
| AAAATGGCTTAGCTATGAAA+AGG | - | chr5_1:70947845-70947864 | Msa0747290:intron | 30.0% | |
| ! | CACAGTTTGCCTTTAAAAAA+TGG | - | chr5_1:70947861-70947880 | Msa0747290:intron | 30.0% |
| ATCTTAACACATTACAGACA+AGG | - | chr5_1:70947962-70947981 | Msa0747290:intron | 30.0% | |
| GACTAACTTTGATCTGAATT+TGG | + | chr5_1:70948062-70948081 | Msa0747280:CDS | 30.0% | |
| !! | TATACCTTTAAAATCCTTCG+AGG | - | chr5_1:70948168-70948187 | Msa0747290:intron | 30.0% |
| ! | TTCAAACCTGAGTTTGTTTA+TGG | + | chr5_1:70948547-70948566 | Msa0747280:intron | 30.0% |
| TCTGAAGAAGTTAAAATCTC+TGG | - | chr5_1:70948778-70948797 | Msa0747290:intron | 30.0% | |
| ! | TTTAACTTCTTCAGATTCAG+TGG | + | chr5_1:70948783-70948802 | Msa0747280:intron | 30.0% |
| !! | GAAATATTTGATGGTGCTAA+AGG | + | chr5_1:70949125-70949144 | Msa0747280:three_prime_UTR | 30.0% |
| TAATAATAGGGTTTCCAGAT+AGG | + | chr5_1:70949243-70949262 | Msa0747280:three_prime_UTR | 30.0% | |
| ATCATGTATCTCCTTATGAT+AGG | - | chr5_1:70949273-70949292 | Msa0747290:intron | 30.0% | |
| ACAAATAGTCTGCAATGAAA+AGG | + | chr5_1:70949322-70949341 | Msa0747280:three_prime_UTR | 30.0% | |
| CAAGACTTTCAATATATGCA+TGG | + | chr5_1:70949465-70949484 | Msa0747280:three_prime_UTR | 30.0% | |
| TGAGAAGAACGGGAAAATAA+AGG | + | chr5_1:70943694-70943713 | Msa0747280:CDS | 35.0% | |
| !! | ATGGAGGTTTTGTGAGTTAT+GGG | - | chr5_1:70943837-70943856 | None:intergenic | 35.0% |
| !! | AATGGAGGTTTTGTGAGTTA+TGG | - | chr5_1:70943838-70943857 | None:intergenic | 35.0% |
| CTTCAATTACTCAACAATGG+AGG | - | chr5_1:70943853-70943872 | None:intergenic | 35.0% | |
| ACAGAAGTTACAGAGAATCA+AGG | + | chr5_1:70943918-70943937 | Msa0747280:intron | 35.0% | |
| ! | CCATCGATTAAGAAAAATCC+AGG | - | chr5_1:70944091-70944110 | None:intergenic | 35.0% |
| ! | CCTGGATTTTTCTTAATCGA+TGG | + | chr5_1:70944088-70944107 | Msa0747280:intron | 35.0% |
| AAAGAAGATTGATGCAGATG+AGG | + | chr5_1:70944146-70944165 | Msa0747280:intron | 35.0% | |
| GAGAATGCATTGTTCAAAGT+TGG | + | chr5_1:70944204-70944223 | Msa0747280:CDS | 35.0% | |
| !! | AAAAATAAATGGGTTGGGAG+TGG | + | chr5_1:70944342-70944361 | Msa0747280:intron | 35.0% |
| !!! | TTTTGGTTTCGATGGTGATT+AGG | + | chr5_1:70944450-70944469 | Msa0747280:intron | 35.0% |
| ! | TTTGGTTTCGATGGTGATTA+GGG | + | chr5_1:70944451-70944470 | Msa0747280:intron | 35.0% |
| !! | GAGAAAGGTGTTTGATTTGT+TGG | + | chr5_1:70944549-70944568 | Msa0747280:intron | 35.0% |
| TTCTGGTAAGCACTTCTAAT+TGG | + | chr5_1:70944670-70944689 | Msa0747280:intron | 35.0% | |
| ! | TCACGATTTGGATTTGAGTT+TGG | + | chr5_1:70944790-70944809 | Msa0747280:CDS | 35.0% |
| ! | CACGATTTGGATTTGAGTTT+GGG | + | chr5_1:70944791-70944810 | Msa0747280:CDS | 35.0% |
| ! | GTTTGGGAAATTCAAGTTCT+AGG | + | chr5_1:70944807-70944826 | Msa0747280:CDS | 35.0% |
| !! | GTTTAGAGTTGATTGGTTTG+GGG | + | chr5_1:70944846-70944865 | Msa0747280:intron | 35.0% |
| ATGCTCCGTGTATTAAACTT+TGG | + | chr5_1:70945075-70945094 | Msa0747280:intron | 35.0% | |
| !! | TGAGTTGTGTCACTTTGTTT+AGG | + | chr5_1:70945109-70945128 | Msa0747280:intron | 35.0% |
| !! | GAGTTGTGTCACTTTGTTTA+GGG | + | chr5_1:70945110-70945129 | Msa0747280:intron | 35.0% |
| TATATTGGGAGAGAAAGCTA+AGG | + | chr5_1:70945316-70945335 | Msa0747280:CDS | 35.0% | |
| AATATGGACATTGCTCTTGA+TGG | + | chr5_1:70945508-70945527 | Msa0747280:intron | 35.0% | |
| TTATGATACCTGGATTCCAT+AGG | - | chr5_1:70945676-70945695 | None:intergenic | 35.0% | |
| ! | TCATTTTCATGCAGTAGCTT+TGG | + | chr5_1:70945751-70945770 | Msa0747280:intron | 35.0% |
| GATTCTACTGTTTATGAGCT+TGG | + | chr5_1:70945843-70945862 | Msa0747280:intron | 35.0% | |
| TTGTAATGTGAAGATGGAAC+AGG | + | chr5_1:70945917-70945936 | Msa0747280:intron | 35.0% | |
| ! | TCAATTTTCAACACCCTTTG+TGG | + | chr5_1:70945984-70946003 | Msa0747280:intron | 35.0% |
| ATTACAACCTGTTCCACAAA+GGG | - | chr5_1:70946000-70946019 | None:intergenic | 35.0% | |
| TATTACAACCTGTTCCACAA+AGG | - | chr5_1:70946001-70946020 | None:intergenic | 35.0% | |
| GTGGAACAGGTTGTAATAAA+TGG | + | chr5_1:70946003-70946022 | Msa0747280:intron | 35.0% | |
| TGTAATAAATGGAGCAGCAA+AGG | + | chr5_1:70946014-70946033 | Msa0747280:CDS | 35.0% | |
| GCTATTGATACTCAACATGT+TGG | + | chr5_1:70946096-70946115 | Msa0747280:intron | 35.0% | |
| CATTGTCATATACTGCAGAA+GGG | - | chr5_1:70946483-70946502 | None:intergenic | 35.0% | |
| ACATTGTCATATACTGCAGA+AGG | - | chr5_1:70946484-70946503 | None:intergenic | 35.0% | |
| TCAACATACTTATATGCAGC+TGG | + | chr5_1:70946527-70946546 | Msa0747280:intron | 35.0% | |
| AGGAAACAACTTCAAGTGAT+AGG | + | chr5_1:70946698-70946717 | Msa0747280:intron | 35.0% | |
| ACTTCAAGTGATAGGACAAT+AGG | + | chr5_1:70946706-70946725 | Msa0747280:intron | 35.0% | |
| ACTATATAGGCAACAGCATT+TGG | + | chr5_1:70946828-70946847 | Msa0747280:intron | 35.0% | |
| GTTAACTATAACGTCAGTCT+TGG | + | chr5_1:70947113-70947132 | Msa0747280:intron | 35.0% | |
| ! | TCTTACATTTGCATTAGCCT+TGG | - | chr5_1:70947229-70947248 | Msa0747290:intron | 35.0% |
| ! | TTTGAAATAGTGCACATACC+AGG | - | chr5_1:70947512-70947531 | Msa0747290:intron | 35.0% |
| CAAACCAAATTGTTATCGGT+AGG | - | chr5_1:70947550-70947569 | Msa0747290:intron | 35.0% | |
| GCAGCAAACCAAATTGTTAT+CGG | - | chr5_1:70947554-70947573 | Msa0747290:intron | 35.0% | |
| AGATCCCATACATTAGATGA+TGG | - | chr5_1:70947638-70947657 | Msa0747290:intron | 35.0% | |
| GGGAAAGACAACTCAAAAAA+TGG | - | chr5_1:70947771-70947790 | Msa0747290:intron | 35.0% | |
| ATATTCCACTCCTTGATCAA+CGG | - | chr5_1:70947792-70947811 | Msa0747290:intron | 35.0% | |
| !! | GCTCTAAAGTTCTTGTCATT+TGG | + | chr5_1:70947880-70947899 | Msa0747280:intron | 35.0% |
| ! | AAAGTTCTTGTCATTTGGTG+AGG | + | chr5_1:70947885-70947904 | Msa0747280:intron | 35.0% |
| ! | AAGTTCTTGTCATTTGGTGA+GGG | + | chr5_1:70947886-70947905 | Msa0747280:intron | 35.0% |
| CCAGAAAGAGAGAAACATAT+TGG | - | chr5_1:70947990-70948009 | Msa0747290:intron | 35.0% | |
| CCAATATGTTTCTCTCTTTC+TGG | + | chr5_1:70947987-70948006 | Msa0747280:intron | 35.0% | |
| ! | TTTCTCTCTTTCTGGAAATC+AGG | + | chr5_1:70947995-70948014 | Msa0747280:intron | 35.0% |
| ! | TTCTCTCTTTCTGGAAATCA+GGG | + | chr5_1:70947996-70948015 | Msa0747280:intron | 35.0% |
| !! | AAAGCAGCTCTAAAATGCAA+GGG | + | chr5_1:70948027-70948046 | Msa0747280:CDS | 35.0% |
| !! | TTTTCTTTAGGTTCACGTAC+TGG | - | chr5_1:70948099-70948118 | Msa0747290:intron | 35.0% |
| CGTGAACCTAAAGAAAACAA+AGG | + | chr5_1:70948102-70948121 | Msa0747280:CDS | 35.0% | |
| ! | CTGGAAGAAATTGCTTTGAA+AGG | - | chr5_1:70948301-70948320 | Msa0747290:intron | 35.0% |
| GCATGGAAATCTTATGACAT+AGG | - | chr5_1:70948408-70948427 | Msa0747290:intron | 35.0% | |
| TTATTCCAGGTTTCATCCAT+GGG | + | chr5_1:70948474-70948493 | Msa0747280:intron | 35.0% | |
| GCAGATGATGATTACATATC+AGG | + | chr5_1:70948946-70948965 | Msa0747280:intron | 35.0% | |
| ! | TGTATTTTGTCCCATGCATA+GGG | - | chr5_1:70949179-70949198 | Msa0747290:intron | 35.0% |
| ! | TTGTATTTTGTCCCATGCAT+AGG | - | chr5_1:70949180-70949199 | Msa0747290:intron | 35.0% |
| TTATGATAGGCAATCCTATC+TGG | - | chr5_1:70949260-70949279 | Msa0747290:intron | 35.0% | |
| AGATAGGATTGCCTATCATA+AGG | + | chr5_1:70949259-70949278 | Msa0747280:three_prime_UTR | 35.0% | |
| TGATATTAGAAAAGGATCCC+TGG | + | chr5_1:70949296-70949315 | Msa0747280:three_prime_UTR | 35.0% | |
| AAGAAGAGAGGTGAGAAGAA+CGG | + | chr5_1:70943683-70943702 | Msa0747280:CDS | 40.0% | |
| GAAGAACGGGAAAATAAAGG+AGG | + | chr5_1:70943697-70943716 | Msa0747280:CDS | 40.0% | |
| GAGATGAGAAGAAGAGGAAA+CGG | + | chr5_1:70943726-70943745 | Msa0747280:CDS | 40.0% | |
| AGATGAGAAGAAGAGGAAAC+GGG | + | chr5_1:70943727-70943746 | Msa0747280:CDS | 40.0% | |
| ! | ATGCAAGTTGAGGAAGAAGA+AGG | - | chr5_1:70943803-70943822 | Msa0747270:intron | 40.0% |
| TTTGTGAGTTATGGGTGAGA+GGG | - | chr5_1:70943829-70943848 | None:intergenic | 40.0% | |
| ! | TTTTGTGAGTTATGGGTGAG+AGG | - | chr5_1:70943830-70943849 | None:intergenic | 40.0% |
| TACAGAGAATCAAGGTGAGT+TGG | + | chr5_1:70943926-70943945 | Msa0747280:intron | 40.0% | |
| ACAGAGAATCAAGGTGAGTT+GGG | + | chr5_1:70943927-70943946 | Msa0747280:intron | 40.0% | |
| GAGGAAAGAATTGATGCAGA+TGG | + | chr5_1:70944165-70944184 | Msa0747280:CDS | 40.0% | |
| TGATGCAGATGGAAAGAAGA+AGG | + | chr5_1:70944176-70944195 | Msa0747280:CDS | 40.0% | |
| GAGACATTACCTCAAACACT+TGG | - | chr5_1:70944374-70944393 | None:intergenic | 40.0% | |
| TAATGCTGCAGATCACGATT+TGG | + | chr5_1:70944778-70944797 | Msa0747280:CDS | 40.0% | |
| !!! | GATTGGTTTGGGGTTTGTTT+TGG | + | chr5_1:70944856-70944875 | Msa0747280:intron | 40.0% |
| TAAACTCACGACAGGTAATG+AGG | + | chr5_1:70945638-70945657 | Msa0747280:intron | 40.0% | |
| TTTGATTCCCATAAAGCGTG+TGG | + | chr5_1:70945815-70945834 | Msa0747280:intron | 40.0% | |
| AATAAATGGAGCAGCAAAGG+AGG | + | chr5_1:70946017-70946036 | Msa0747280:CDS | 40.0% | |
| AGCAGTATTAGCTGTGACAA+AGG | + | chr5_1:70946050-70946069 | Msa0747280:CDS | 40.0% | |
| CAACATGTTGGGGAAGATAT+TGG | + | chr5_1:70946108-70946127 | Msa0747280:intron | 40.0% | |
| ATTGTCTGCATTCTGTGAGA+AGG | + | chr5_1:70946902-70946921 | Msa0747280:CDS | 40.0% | |
| ! | ATTGATCCTATGGAAAGCGT+TGG | - | chr5_1:70947144-70947163 | Msa0747290:intron | 40.0% |
| ATTCCACAATTTCGACGTTG+CGG | - | chr5_1:70947206-70947225 | Msa0747290:intron | 40.0% | |
| ACACCTGATAAGATCACATC+CGG | - | chr5_1:70947310-70947329 | Msa0747290:intron | 40.0% | |
| !! | AACAATTTGGTTTGCTGCCA+TGG | + | chr5_1:70947556-70947575 | Msa0747280:intron | 40.0% |
| TATTCCACTCCTTGATCAAC+GGG | - | chr5_1:70947791-70947810 | Msa0747290:intron | 40.0% | |
| ACTACAACACATGCACAATG+GGG | - | chr5_1:70947916-70947935 | Msa0747290:intron | 40.0% | |
| GACTACAACACATGCACAAT+GGG | - | chr5_1:70947917-70947936 | Msa0747290:intron | 40.0% | |
| AGACTACAACACATGCACAA+TGG | - | chr5_1:70947918-70947937 | Msa0747290:intron | 40.0% | |
| !! | CAAAGCAGCTCTAAAATGCA+AGG | + | chr5_1:70948026-70948045 | Msa0747280:CDS | 40.0% |
| ! | TCTAAAATGCAAGGGAAGAG+AGG | + | chr5_1:70948035-70948054 | Msa0747280:CDS | 40.0% |
| CTTTGATCTGAATTTGGGCA+TGG | + | chr5_1:70948068-70948087 | Msa0747280:CDS | 40.0% | |
| TTAAAATCCTTCGAGGATGC+AGG | - | chr5_1:70948161-70948180 | Msa0747290:intron | 40.0% | |
| ! | GCATCCTCGAAGGATTTTAA+AGG | + | chr5_1:70948161-70948180 | Msa0747280:CDS | 40.0% |
| CTTATTCCAGGTTTCATCCA+TGG | + | chr5_1:70948473-70948492 | Msa0747280:intron | 40.0% | |
| TAGAAGGATTCATCACGTGT+AGG | + | chr5_1:70948688-70948707 | Msa0747280:intron | 40.0% | |
| GGTGAGGTCTAAATCTTTCA+AGG | - | chr5_1:70948739-70948758 | Msa0747290:intron | 40.0% | |
| TGTTCTATTGCAACCTGCTT+AGG | + | chr5_1:70948904-70948923 | Msa0747280:intron | 40.0% | |
| ATTAGAGAGCTAACCTAAGC+AGG | - | chr5_1:70948920-70948939 | Msa0747290:intron | 40.0% | |
| GAGCTATTTGCAAGGCTATA+TGG | - | chr5_1:70949088-70949107 | Msa0747290:intron | 40.0% | |
| CTGTCATTGAGCTATTTGCA+AGG | - | chr5_1:70949096-70949115 | Msa0747290:intron | 40.0% | |
| TGCAGACTATTTGTAAGCCA+GGG | - | chr5_1:70949316-70949335 | Msa0747290:intron | 40.0% | |
| TTGCAGACTATTTGTAAGCC+AGG | - | chr5_1:70949317-70949336 | Msa0747290:intron | 40.0% | |
| AGAAGAGAGGTGAGAAGAAC+GGG | + | chr5_1:70943684-70943703 | Msa0747280:CDS | 45.0% | |
| GGGAAAATAAAGGAGGTCGA+GGG | + | chr5_1:70943704-70943723 | Msa0747280:CDS | 45.0% | |
| AGAAGAAGAGGAAACGGGTA+CGG | + | chr5_1:70943732-70943751 | Msa0747280:intron | 45.0% | |
| ! | CAAGTTGAGGAAGAAGAAGG+AGG | - | chr5_1:70943800-70943819 | Msa0747270:intron | 45.0% |
| GTTTCGATGGTGATTAGGGT+TGG | + | chr5_1:70944455-70944474 | Msa0747280:intron | 45.0% | |
| GTCATCGATAAACTCACGAC+AGG | + | chr5_1:70945630-70945649 | Msa0747280:CDS | 45.0% | |
| GCAGAGGAGTTTATGATACC+TGG | - | chr5_1:70945686-70945705 | None:intergenic | 45.0% | |
| TCCTGATCCACACGCTTTAT+GGG | - | chr5_1:70945825-70945844 | None:intergenic | 45.0% | |
| ATCCTGATCCACACGCTTTA+TGG | - | chr5_1:70945826-70945845 | None:intergenic | 45.0% | |
| TTCAACACCCTTTGTGGAAC+AGG | + | chr5_1:70945990-70946009 | Msa0747280:intron | 45.0% | |
| TCCAGAAACTTCCATTCCTC+TGG | - | chr5_1:70946076-70946095 | None:intergenic | 45.0% | |
| TGTTGGGGAAGATATTGGAC+AGG | + | chr5_1:70946113-70946132 | Msa0747280:intron | 45.0% | |
| !! | TTTCCTGTAGCTTTGTGGCA+TGG | + | chr5_1:70946256-70946275 | Msa0747280:intron | 45.0% |
| TGGAGCCCAAAACCATAGTA+AGG | - | chr5_1:70946313-70946332 | None:intergenic | 45.0% | |
| GAATTGCGATTTGCAGTCCA+AGG | + | chr5_1:70946429-70946448 | Msa0747280:intron | 45.0% | |
| ACCGTATCCAATTTGATCCG+CGG | - | chr5_1:70946876-70946895 | Msa0747290:CDS | 45.0% | |
| CAATTTCGACGTTGCGGTAA+TGG | - | chr5_1:70947200-70947219 | Msa0747290:intron | 45.0% | |
| TTACCGCAACGTCGAAATTG+TGG | + | chr5_1:70947200-70947219 | Msa0747280:CDS | 45.0% | |
| CGTCGAAATTGTGGAATCCA+AGG | + | chr5_1:70947209-70947228 | Msa0747280:CDS | 45.0% | |
| TGTCCGGATGTGATCTTATC+AGG | + | chr5_1:70947304-70947323 | Msa0747280:intron | 45.0% | |
| TCGGCCTACCGATAACAATT+TGG | + | chr5_1:70947543-70947562 | Msa0747280:intron | 45.0% | |
| GTTGTCTTTCCCGTTGATCA+AGG | + | chr5_1:70947779-70947798 | Msa0747280:intron | 45.0% | |
| TTCCTTGAGTCTCTCTTGTG+AGG | - | chr5_1:70948526-70948545 | Msa0747290:intron | 45.0% | |
| GGCAAGCCATAAACAAACTC+AGG | - | chr5_1:70948556-70948575 | Msa0747290:intron | 45.0% | |
| !! | TGTAGGAGCATTCCCTCATA+AGG | + | chr5_1:70948705-70948724 | Msa0747280:intron | 45.0% |
| ! | AAGGATGTGCAGCCTTATGA+GGG | - | chr5_1:70948720-70948739 | Msa0747290:intron | 45.0% |
| TCTGGTGTATGCAGCAAGAA+GGG | - | chr5_1:70948760-70948779 | Msa0747290:intron | 45.0% | |
| CAGATTCAGTGGAATCTGCA+AGG | + | chr5_1:70948794-70948813 | Msa0747280:intron | 45.0% | |
| ATAGCCTCTTCACTTAGGCT+TGG | - | chr5_1:70948839-70948858 | Msa0747290:intron | 45.0% | |
| CTTGCATAGCCTCTTCACTT+AGG | - | chr5_1:70948844-70948863 | Msa0747290:intron | 45.0% | |
| CACTGATACAAGAGCCTTGA+TGG | + | chr5_1:70948980-70948999 | Msa0747280:CDS | 45.0% | |
| !! | TCCAGCTTTGAACTCCATCA+AGG | - | chr5_1:70948997-70949016 | Msa0747290:intron | 45.0% |
| TGGAGTTCAAAGCTGGAGTA+AGG | + | chr5_1:70949000-70949019 | Msa0747280:CDS | 45.0% | |
| AATATGCTCCCCCAACTGAT+TGG | + | chr5_1:70949153-70949172 | Msa0747280:three_prime_UTR | 45.0% | |
| ATGCATAGGGCCAATCAGTT+GGG | - | chr5_1:70949166-70949185 | Msa0747290:intron | 45.0% | |
| ! | AACTGATTGGCCCTATGCAT+GGG | + | chr5_1:70949166-70949185 | Msa0747280:three_prime_UTR | 45.0% |
| !!! | TTTTACTAATATATTAAATT+TGG | - | chr5_1:70948213-70948232 | Msa0747290:intron | 5.0% |
| CGGGAAAATAAAGGAGGTCG+AGG | + | chr5_1:70943703-70943722 | Msa0747280:CDS | 50.0% | |
| TCGAGGGAGATGAGAAGAAG+AGG | + | chr5_1:70943720-70943739 | Msa0747280:CDS | 50.0% | |
| GAAGAAGAGGAAACGGGTAC+GGG | + | chr5_1:70943733-70943752 | Msa0747280:intron | 50.0% | |
| AAACGGGTACGGGAGAAAGA+AGG | + | chr5_1:70943743-70943762 | Msa0747280:intron | 50.0% | |
| AACGGGTACGGGAGAAAGAA+GGG | + | chr5_1:70943744-70943763 | Msa0747280:intron | 50.0% | |
| TGGCACTCACCAAGTGTTTG+AGG | + | chr5_1:70944362-70944381 | Msa0747280:intron | 50.0% | |
| TCCCATAAAGCGTGTGGATC+AGG | + | chr5_1:70945821-70945840 | Msa0747280:intron | 50.0% | |
| AATGGAGCAGCAAAGGAGGT+AGG | + | chr5_1:70946021-70946040 | Msa0747280:CDS | 50.0% | |
| TTAGCTGTGACAAAGGCCAG+AGG | + | chr5_1:70946057-70946076 | Msa0747280:CDS | 50.0% | |
| TGTGACAAAGGCCAGAGGAA+TGG | + | chr5_1:70946062-70946081 | Msa0747280:CDS | 50.0% | |
| GCCAGAGGAATGGAAGTTTC+TGG | + | chr5_1:70946072-70946091 | Msa0747280:intron | 50.0% | |
| CTTCCATGCCACAAAGCTAC+AGG | - | chr5_1:70946262-70946281 | None:intergenic | 50.0% | |
| !!! | GGTTTTGGGCTCCATATCTC+AGG | + | chr5_1:70946319-70946338 | Msa0747280:intron | 50.0% |
| GAAATCGACTACAACCGCTG+TGG | - | chr5_1:70946455-70946474 | None:intergenic | 50.0% | |
| GTACATGCCGCGGATCAAAT+TGG | + | chr5_1:70946866-70946885 | Msa0747280:CDS | 50.0% | |
| GCCGCGGATCAAATTGGATA+CGG | + | chr5_1:70946872-70946891 | Msa0747280:CDS | 50.0% | |
| ATTCTGTGAGAAGGCCAGCA+TGG | + | chr5_1:70946911-70946930 | Msa0747280:CDS | 50.0% | |
| GTTGCTCCAACGCTTTCCAT+AGG | + | chr5_1:70947135-70947154 | Msa0747280:intron | 50.0% | |
| GTTATCGGTAGGCCGACATT+AGG | - | chr5_1:70947539-70947558 | Msa0747290:intron | 50.0% | |
| CTTTCCCGTTGATCAAGGAG+TGG | + | chr5_1:70947784-70947803 | Msa0747280:intron | 50.0% | |
| CAACACATGCACAATGGGGT+TGG | - | chr5_1:70947912-70947931 | Msa0747290:intron | 50.0% | |
| CTTACAACCTGCATCCTCGA+AGG | + | chr5_1:70948151-70948170 | Msa0747280:CDS | 50.0% | |
| AAGAGCCCATGGATGAAACC+TGG | - | chr5_1:70948482-70948501 | Msa0747290:intron | 50.0% | |
| TTCATCCATGGGCTCTTCAC+AGG | + | chr5_1:70948485-70948504 | Msa0747280:intron | 50.0% | |
| AGCCTCACAAGAGAGACTCA+AGG | + | chr5_1:70948521-70948540 | Msa0747280:intron | 50.0% | |
| ! | CAAGGATGTGCAGCCTTATG+AGG | - | chr5_1:70948721-70948740 | Msa0747290:intron | 50.0% |
| TGTATGCAGCAAGAAGGGTG+AGG | - | chr5_1:70948755-70948774 | Msa0747290:intron | 50.0% | |
| CTCTGGTGTATGCAGCAAGA+AGG | - | chr5_1:70948761-70948780 | Msa0747290:intron | 50.0% | |
| TGCTCCAAGCCTAAGTGAAG+AGG | + | chr5_1:70948832-70948851 | Msa0747280:CDS | 50.0% | |
| GCCTTGATGGAGTTCAAAGC+TGG | + | chr5_1:70948993-70949012 | Msa0747280:CDS | 50.0% | |
| TGCATAGGGCCAATCAGTTG+GGG | - | chr5_1:70949165-70949184 | Msa0747290:intron | 50.0% | |
| CATGCATAGGGCCAATCAGT+TGG | - | chr5_1:70949167-70949186 | Msa0747290:intron | 50.0% | |
| ! | CAACTGATTGGCCCTATGCA+TGG | + | chr5_1:70949165-70949184 | Msa0747280:three_prime_UTR | 50.0% |
| ACGGGTACGGGAGAAAGAAG+GGG | + | chr5_1:70943745-70943764 | Msa0747280:intron | 55.0% | |
| ! | GAGAGGGAGCATGCAAGTTG+AGG | - | chr5_1:70943813-70943832 | None:intergenic | 55.0% |
| GAGGACTTCTGAGTCGCCTA+TGG | + | chr5_1:70945657-70945676 | Msa0747280:intron | 55.0% | |
| CTGAGTCGCCTATGGAATCC+AGG | + | chr5_1:70945665-70945684 | Msa0747280:intron | 55.0% | |
| TTTGCAGTCCAAGGCCACAG+CGG | + | chr5_1:70946438-70946457 | Msa0747280:intron | 55.0% | |
| !! | AAAGCGTCGTGTACATGCCG+CGG | + | chr5_1:70946856-70946875 | Msa0747280:CDS | 55.0% |
| AAGGCCAGCATGGTGAGCAA+GGG | + | chr5_1:70946921-70946940 | Msa0747280:CDS | 55.0% | |
| CACTTCCTGTGAAGAGCCCA+TGG | - | chr5_1:70948493-70948512 | Msa0747290:intron | 55.0% | |
| GCATAGGGCCAATCAGTTGG+GGG | - | chr5_1:70949164-70949183 | Msa0747290:intron | 55.0% | |
| CGGGTACGGGAGAAAGAAGG+GGG | + | chr5_1:70943746-70943765 | Msa0747280:intron | 60.0% | |
| GGGTACGGGAGAAAGAAGGG+GGG | + | chr5_1:70943747-70943766 | Msa0747280:intron | 60.0% | |
| GACTACAACCGCTGTGGCCT+TGG | - | chr5_1:70946449-70946468 | None:intergenic | 60.0% | |
| GAAGGCCAGCATGGTGAGCA+AGG | + | chr5_1:70946920-70946939 | Msa0747280:CDS | 60.0% | |
| AGGCCAGCATGGTGAGCAAG+GGG | + | chr5_1:70946922-70946941 | Msa0747280:CDS | 60.0% | |
| TCACCCCTTGCTCACCATGC+TGG | - | chr5_1:70946928-70946947 | Msa0747290:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 70943674 | 70949507 | 70943674 | ID=Msa0747280;Name=Msa0747280 |
| chr5_1 | mRNA | 70943674 | 70949507 | 70943674 | ID=Msa0747280-mRNA-1;Parent=Msa0747280;Name=Msa0747280-mRNA-1;_AED=0.30;_eAED=0.33;_QI=0|0.41|0.46|1|0.66|0.69|13|464|383 |
| chr5_1 | exon | 70943674 | 70943748 | 70943674 | ID=Msa0747280-mRNA-1:exon:20970;Parent=Msa0747280-mRNA-1 |
| chr5_1 | exon | 70944153 | 70944248 | 70944153 | ID=Msa0747280-mRNA-1:exon:20971;Parent=Msa0747280-mRNA-1 |
| chr5_1 | exon | 70944641 | 70944674 | 70944641 | ID=Msa0747280-mRNA-1:exon:20972;Parent=Msa0747280-mRNA-1 |
| chr5_1 | exon | 70944768 | 70944860 | 70944768 | ID=Msa0747280-mRNA-1:exon:20973;Parent=Msa0747280-mRNA-1 |
| chr5_1 | exon | 70945276 | 70945418 | 70945276 | ID=Msa0747280-mRNA-1:exon:20974;Parent=Msa0747280-mRNA-1 |
| chr5_1 | exon | 70945580 | 70945651 | 70945580 | ID=Msa0747280-mRNA-1:exon:20975;Parent=Msa0747280-mRNA-1 |
| chr5_1 | exon | 70946012 | 70946086 | 70946012 | ID=Msa0747280-mRNA-1:exon:20976;Parent=Msa0747280-mRNA-1 |
| chr5_1 | exon | 70946445 | 70946510 | 70946445 | ID=Msa0747280-mRNA-1:exon:20977;Parent=Msa0747280-mRNA-1 |
| chr5_1 | exon | 70946837 | 70946943 | 70946837 | ID=Msa0747280-mRNA-1:exon:20978;Parent=Msa0747280-mRNA-1 |
| chr5_1 | exon | 70947174 | 70947242 | 70947174 | ID=Msa0747280-mRNA-1:exon:20979;Parent=Msa0747280-mRNA-1 |
| chr5_1 | exon | 70948017 | 70948182 | 70948017 | ID=Msa0747280-mRNA-1:exon:20980;Parent=Msa0747280-mRNA-1 |
| chr5_1 | exon | 70948797 | 70948876 | 70948797 | ID=Msa0747280-mRNA-1:exon:20981;Parent=Msa0747280-mRNA-1 |
| chr5_1 | exon | 70948968 | 70949507 | 70948968 | ID=Msa0747280-mRNA-1:exon:20982;Parent=Msa0747280-mRNA-1 |
| chr5_1 | CDS | 70943674 | 70943748 | 70943674 | ID=Msa0747280-mRNA-1:cds;Parent=Msa0747280-mRNA-1 |
| chr5_1 | CDS | 70944153 | 70944248 | 70944153 | ID=Msa0747280-mRNA-1:cds;Parent=Msa0747280-mRNA-1 |
| chr5_1 | CDS | 70944641 | 70944674 | 70944641 | ID=Msa0747280-mRNA-1:cds;Parent=Msa0747280-mRNA-1 |
| chr5_1 | CDS | 70944768 | 70944860 | 70944768 | ID=Msa0747280-mRNA-1:cds;Parent=Msa0747280-mRNA-1 |
| chr5_1 | CDS | 70945276 | 70945418 | 70945276 | ID=Msa0747280-mRNA-1:cds;Parent=Msa0747280-mRNA-1 |
| chr5_1 | CDS | 70945580 | 70945651 | 70945580 | ID=Msa0747280-mRNA-1:cds;Parent=Msa0747280-mRNA-1 |
| chr5_1 | CDS | 70946012 | 70946086 | 70946012 | ID=Msa0747280-mRNA-1:cds;Parent=Msa0747280-mRNA-1 |
| chr5_1 | CDS | 70946445 | 70946510 | 70946445 | ID=Msa0747280-mRNA-1:cds;Parent=Msa0747280-mRNA-1 |
| chr5_1 | CDS | 70946837 | 70946943 | 70946837 | ID=Msa0747280-mRNA-1:cds;Parent=Msa0747280-mRNA-1 |
| chr5_1 | CDS | 70947174 | 70947242 | 70947174 | ID=Msa0747280-mRNA-1:cds;Parent=Msa0747280-mRNA-1 |
| chr5_1 | CDS | 70948017 | 70948182 | 70948017 | ID=Msa0747280-mRNA-1:cds;Parent=Msa0747280-mRNA-1 |
| chr5_1 | CDS | 70948797 | 70948876 | 70948797 | ID=Msa0747280-mRNA-1:cds;Parent=Msa0747280-mRNA-1 |
| chr5_1 | CDS | 70948968 | 70949043 | 70948968 | ID=Msa0747280-mRNA-1:cds;Parent=Msa0747280-mRNA-1 |
| chr5_1 | three_prime_UTR | 70949044 | 70949507 | 70949044 | ID=Msa0747280-mRNA-1:three_prime_utr;Parent=Msa0747280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
