Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1012090 | XP_003592305.1 | 91.228 | 171 | 15 | 0 | 121 | 291 | 41 | 211 | 7.85e-104 | 317 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1012090 | sp|Q9FJ82|DAPB3_ARATH | 77.215 | 158 | 36 | 0 | 121 | 278 | 36 | 193 | 1.20e-83 | 258 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1012090 | G7IAQ3 | 91.228 | 171 | 15 | 0 | 121 | 291 | 41 | 211 | 3.75e-104 | 317 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007020 | Msa1012090 | 0.879113 | 1.624561e-69 | -8.615850e-47 |
| Msa0747280 | Msa1012090 | 0.889394 | 2.519142e-73 | -8.615850e-47 |
| Msa0501400 | Msa1012090 | 0.898366 | 5.693925e-77 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1012090 | MtrunA17_Chr1g0203761 | 91.228 | 171 | 15 | 0 | 121 | 291 | 41 | 211 | 7.22e-108 | 317 |
| Msa1012090 | MtrunA17_Chr4g0073341 | 94.872 | 39 | 2 | 0 | 34 | 72 | 145 | 183 | 9.11e-16 | 77.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1012090 | AT5G52100.1 | 77.215 | 158 | 36 | 0 | 121 | 278 | 36 | 193 | 1.22e-84 | 258 |
Find 128 sgRNAs with CRISPR-Local
Find 311 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAAACCTGAGTTTGTTTA+TGG | 0.100230 | 7_1:+17163734 | Msa1012090:exon |
| ATCCTGATCCACACGCTTTA+TGG | 0.119105 | 7_1:-17161006 | None:intergenic |
| AGTAAAGGAAAGATAATAAT+AGG | 0.187247 | 7_1:+17164416 | Msa1012090:three_prime_UTR |
| AAATGACCTTACTATGGTTT+TGG | 0.191058 | 7_1:+17161487 | Msa1012090:CDS |
| GTGGAACAGGTTGTAATAAA+TGG | 0.207909 | 7_1:+17161186 | Msa1012090:intron |
| AACAGAAGATAGTTGATTAT+TGG | 0.224941 | 7_1:+17163766 | Msa1012090:three_prime_UTR |
| AATCAACTATCTTCTGTTAT+AGG | 0.232152 | 7_1:-17163761 | None:intergenic |
| AGAGATAAAGTATGTTATAT+TGG | 0.274675 | 7_1:+17160483 | Msa1012090:intron |
| CAATTTCGACGTTGCGGTAA+TGG | 0.296694 | 7_1:-17162384 | None:intergenic |
| TTATGATAGGCAATCCTATC+TGG | 0.308805 | 7_1:-17164443 | None:intergenic |
| GAGCTATTTGCAAGGCTATA+TGG | 0.309109 | 7_1:-17164271 | None:intergenic |
| GCAGATGATGATTACATATC+AGG | 0.313619 | 7_1:+17164132 | Msa1012090:intron |
| GCCAGAGGAATGGAAGTTTC+TGG | 0.319689 | 7_1:+17161255 | Msa1012090:CDS |
| CACTGATACAAGAGCCTTGA+TGG | 0.321757 | 7_1:+17164166 | Msa1012090:three_prime_UTR |
| GCATCCTCGAAGGAGTTTAA+AGG | 0.331002 | 7_1:+17163348 | Msa1012090:CDS |
| TATACTAAATGACCTTACTA+TGG | 0.353599 | 7_1:+17161481 | Msa1012090:CDS |
| CAACATGTTGGGGAAGATAT+TGG | 0.357960 | 7_1:+17161291 | Msa1012090:CDS |
| CAAGGATGTGCAGCCTTATG+AGG | 0.363133 | 7_1:-17163904 | None:intergenic |
| ACTATATAGGCAACAACATT+TGG | 0.363452 | 7_1:+17162011 | Msa1012090:intron |
| GACTACAACCGCTGTGGCCT+TGG | 0.364137 | 7_1:-17161629 | None:intergenic |
| ATATGGTATAAGTATTTAAT+CGG | 0.365194 | 7_1:-17164254 | None:intergenic |
| TAATAATAGGGTTTCCAGAT+AGG | 0.365703 | 7_1:+17164429 | Msa1012090:three_prime_UTR |
| GATTCTACTGTTTATGAGCT+TGG | 0.384344 | 7_1:+17161026 | Msa1012090:CDS |
| TCCCATAAAGCGTGTGGATC+AGG | 0.389891 | 7_1:+17161004 | Msa1012090:CDS |
| GAGATAAAGTATGTTATATT+GGG | 0.394913 | 7_1:+17160484 | Msa1012090:intron |
| TCCTGATCCACACGCTTTAT+GGG | 0.396006 | 7_1:-17161005 | None:intergenic |
| GTACATGCCGCGGATCAAAT+TGG | 0.402326 | 7_1:+17162049 | Msa1012090:CDS |
| ATGCATAGGGCCAATCAGTT+GGG | 0.408330 | 7_1:-17164349 | None:intergenic |
| CTATTGATACTCAACATGTT+GGG | 0.408524 | 7_1:+17161280 | Msa1012090:CDS |
| GAGATGAGAAGAAGAGGAAA+CGG | 0.410173 | 7_1:+17159269 | None:intergenic |
| CTGTAATAATATTGATCCTA+TGG | 0.411160 | 7_1:-17162338 | None:intergenic |
| TCTGAAGAAGTTAAAATCTC+TGG | 0.431243 | 7_1:-17163961 | None:intergenic |
| TCACCCCTTGCTCACCATGC+TGG | 0.433731 | 7_1:-17162108 | None:intergenic |
| AGTATATGACAATGTAAAAC+AGG | 0.435138 | 7_1:+17161672 | Msa1012090:CDS |
| CTTATTCCAGGTTTCATCCA+TGG | 0.441827 | 7_1:+17163660 | Msa1012090:intron |
| GTAAAGGAAAGATAATAATA+GGG | 0.442334 | 7_1:+17164417 | Msa1012090:three_prime_UTR |
| ATAACAAACGAAATATTTGA+TGG | 0.444552 | 7_1:+17164302 | Msa1012090:three_prime_UTR |
| CAGATTCAGTGGAATCTGTA+AGG | 0.450140 | 7_1:+17163980 | Msa1012090:three_prime_UTR |
| TTGCAGACTATTTGTAAGCC+AGG | 0.450460 | 7_1:-17164500 | None:intergenic |
| TCTTACATTTGCATTAGCCT+TGG | 0.452314 | 7_1:-17162413 | None:intergenic |
| GCAAATTATTATAAGAGTAA+AGG | 0.452896 | 7_1:+17164401 | Msa1012090:three_prime_UTR |
| GGTGAGGTCTAAATCTTTCA+AGG | 0.460191 | 7_1:-17163922 | None:intergenic |
| TACATAGCAGAAATTCTTTG+AGG | 0.464491 | 7_1:+17163813 | Msa1012090:three_prime_UTR |
| TTCATCCATGGGCTCTTCAC+AGG | 0.471535 | 7_1:+17163672 | Msa1012090:CDS |
| TCCAGAAACTTCCATTCCTC+TGG | 0.475788 | 7_1:-17161256 | None:intergenic |
| GAAATATTTGATGGTGCTAA+AGG | 0.477207 | 7_1:+17164311 | Msa1012090:three_prime_UTR |
| ATAGCCTCTTCACTTAGGCT+TGG | 0.478230 | 7_1:-17164022 | None:intergenic |
| TTAAACTCCTTCGAGGATGC+AGG | 0.479138 | 7_1:-17163345 | None:intergenic |
| ACAAATAGTCTGCAATGAAA+AGG | 0.479215 | 7_1:+17164508 | Msa1012090:three_prime_UTR |
| CTTGCATAGCCTCTTCACTT+AGG | 0.480071 | 7_1:-17164027 | None:intergenic |
| TATACCTTTAAACTCCTTCG+AGG | 0.483660 | 7_1:-17163352 | None:intergenic |
| ATCATGTATCTCCTTATGAT+AGG | 0.485561 | 7_1:-17164456 | None:intergenic |
| GATGGAAAGAAGAAGGAAGA+AGG | 0.490833 | 7_1:+17159725 | Msa1012090:CDS |
| TTATTCCAGGTTTCATCCAT+GGG | 0.490950 | 7_1:+17163661 | Msa1012090:intron |
| CATGGGCTCTTCACAGGAAG+TGG | 0.492997 | 7_1:+17163678 | Msa1012090:CDS |
| TTTCCTGTAGCTTTGTGGCA+TGG | 0.496064 | 7_1:+17161439 | Msa1012090:intron |
| AGATAGGATTGCCTATCATA+AGG | 0.496987 | 7_1:+17164445 | Msa1012090:three_prime_UTR |
| GCTATTGATACTCAACATGT+TGG | 0.498878 | 7_1:+17161279 | Msa1012090:CDS |
| CACTTCCTGTGAAGAGCCCA+TGG | 0.499204 | 7_1:-17163677 | None:intergenic |
| TTCCTTGAGTCTCTCTTGTG+AGG | 0.500081 | 7_1:-17163710 | None:intergenic |
| ATGGAAAGAAGAAGGAAGAA+GGG | 0.501486 | 7_1:+17159726 | Msa1012090:CDS |
| ATGATACATGATATTAGAAA+AGG | 0.502189 | 7_1:+17164474 | Msa1012090:three_prime_UTR |
| AACTGATTGGCCCTATGCAT+GGG | 0.502435 | 7_1:+17164352 | Msa1012090:three_prime_UTR |
| TGGAGTTCAAAGCTGGAGTA+AGG | 0.503066 | 7_1:+17164186 | Msa1012090:three_prime_UTR |
| TCGAGGGAGATGAGAAGAAG+AGG | 0.505017 | 7_1:+17159263 | None:intergenic |
| GTTGCTCCAACGCTTTCCAT+AGG | 0.508224 | 7_1:+17162322 | Msa1012090:CDS |
| TGATGCAGATGGAAAGAAGA+AGG | 0.510322 | 7_1:+17159718 | Msa1012090:CDS |
| TAGAGCCCAAAACCATAGTA+AGG | 0.510429 | 7_1:-17161493 | None:intergenic |
| CAACTGATTGGCCCTATGCA+TGG | 0.512282 | 7_1:+17164351 | Msa1012090:three_prime_UTR |
| CTCTGGTGTATGCAGCAAGA+AGG | 0.513021 | 7_1:-17163944 | None:intergenic |
| AGGATCAATATTATTACAGC+AGG | 0.513741 | 7_1:+17162342 | Msa1012090:CDS |
| TGTAGGAGCATTCCCTCATA+AGG | 0.514702 | 7_1:+17163891 | Msa1012090:three_prime_UTR |
| TTTAACTTCTTCAGATTCAG+TGG | 0.515006 | 7_1:+17163969 | Msa1012090:three_prime_UTR |
| GCCTTGATGGAGTTCAAAGC+TGG | 0.517462 | 7_1:+17164179 | Msa1012090:three_prime_UTR |
| ACTATAACGTCAGGGTGTCT+TGG | 0.518817 | 7_1:+17162300 | Msa1012090:intron |
| TTACCGCAACGTCGAAATTG+TGG | 0.519053 | 7_1:+17162387 | Msa1012090:CDS |
| GGGAATGCATTGTTCAAAGC+TGG | 0.521453 | 7_1:+17159746 | Msa1012090:CDS |
| ATAGTAAGGTCATTTAGTAT+AGG | 0.525371 | 7_1:-17161479 | None:intergenic |
| AGATGAGAAGAAGAGGAAAC+GGG | 0.525399 | 7_1:+17159270 | None:intergenic |
| ACATTGTCATATACTGCAGA+AGG | 0.525891 | 7_1:-17161664 | None:intergenic |
| CATGCATAGGGCCAATCAGT+TGG | 0.529277 | 7_1:-17164350 | None:intergenic |
| TATATGAGAAACTATGAACT+TGG | 0.533433 | 7_1:+17164562 | Msa1012090:three_prime_UTR |
| AAAGAAGATTGATGCAGATG+AGG | 0.536126 | 7_1:+17159688 | Msa1012090:CDS |
| TCCAGCTTTGAACTCCATCA+AGG | 0.536851 | 7_1:-17164180 | None:intergenic |
| GAGGAAAGAATTGATGCAGA+TGG | 0.541097 | 7_1:+17159707 | Msa1012090:CDS |
| TGTAATAAATGGAGCAGCAA+AGG | 0.543811 | 7_1:+17161197 | Msa1012090:CDS |
| CGTCGAAATTGTGGAATCCA+AGG | 0.546529 | 7_1:+17162396 | Msa1012090:CDS |
| AGCAGTATTAGCTGTGACAA+AGG | 0.549949 | 7_1:+17161233 | Msa1012090:CDS |
| TTTGATTCCCATAAAGCGTG+TGG | 0.552857 | 7_1:+17160998 | Msa1012090:CDS |
| TGTTGGGGAAGATATTGGAC+AGG | 0.558324 | 7_1:+17161296 | Msa1012090:CDS |
| TGCAGACTATTTGTAAGCCA+GGG | 0.558908 | 7_1:-17164499 | None:intergenic |
| TGCATAGGGCCAATCAGTTG+GGG | 0.559790 | 7_1:-17164348 | None:intergenic |
| TGCTCCAAGCCTAAGTGAAG+AGG | 0.559997 | 7_1:+17164018 | Msa1012090:three_prime_UTR |
| GGCAAGCCATAAACAAACTC+AGG | 0.560166 | 7_1:-17163740 | None:intergenic |
| AAGGATGTGCAGCCTTATGA+GGG | 0.571624 | 7_1:-17163903 | None:intergenic |
| ATTGATCCTATGGAAAGCGT+TGG | 0.571844 | 7_1:-17162328 | None:intergenic |
| TAGCCTTGCAAATAGCTCAA+TGG | 0.577978 | 7_1:+17164276 | Msa1012090:three_prime_UTR |
| TGATATTAGAAAAGGATCCC+TGG | 0.578018 | 7_1:+17164482 | Msa1012090:three_prime_UTR |
| GACAAAATACAATTACTATG+AGG | 0.578080 | 7_1:+17164374 | Msa1012090:three_prime_UTR |
| TCTGGTGTATGCAGCAAGAA+GGG | 0.579600 | 7_1:-17163943 | None:intergenic |
| GCCGCGGATCAAATTGGATA+CGG | 0.582539 | 7_1:+17162055 | Msa1012090:CDS |
| GTCATCGATAAACTCACGAC+AGG | 0.586511 | 7_1:+17160813 | Msa1012090:CDS |
| CTGCCATTGAGCTATTTGCA+AGG | 0.591649 | 7_1:-17164279 | None:intergenic |
| TGTGACAAAGGCCAGAGGAA+TGG | 0.593244 | 7_1:+17161245 | Msa1012090:CDS |
| TAGAAAACAAAGTTTACAAG+TGG | 0.593903 | 7_1:+17160760 | Msa1012090:intron |
| CAAGACTTTCAATATATGCA+TGG | 0.601988 | 7_1:+17164651 | Msa1012090:three_prime_UTR |
| AATGGAGCAGCAAAGGAGGT+AGG | 0.602441 | 7_1:+17161204 | Msa1012090:CDS |
| TATTGATACTCAACATGTTG+GGG | 0.603145 | 7_1:+17161281 | Msa1012090:CDS |
| TTTAGTATAGGTATTTCAAG+AGG | 0.603621 | 7_1:-17161467 | None:intergenic |
| GAATCCTCTGAATTATACTC+AGG | 0.606536 | 7_1:+17160579 | Msa1012090:CDS |
| AATAAATGGAGCAGCAAAGG+AGG | 0.611168 | 7_1:+17161200 | Msa1012090:CDS |
| ATTGTCTGCATTCTGCGAGA+AGG | 0.616513 | 7_1:+17162085 | Msa1012090:CDS |
| TAGAAGGATTCATCACGTGT+AGG | 0.618364 | 7_1:+17163874 | Msa1012090:three_prime_UTR |
| ATTCCACAATTTCGACGTTG+CGG | 0.630579 | 7_1:-17162390 | None:intergenic |
| ACCGTATCCAATTTGATCCG+CGG | 0.631428 | 7_1:-17162056 | None:intergenic |
| CATTGTCATATACTGCAGAA+GGG | 0.632959 | 7_1:-17161663 | None:intergenic |
| CTAACCTGAGTATAATTCAG+AGG | 0.633689 | 7_1:-17160583 | None:intergenic |
| CTTACAACCTGCATCCTCGA+AGG | 0.638582 | 7_1:+17163338 | Msa1012090:CDS |
| ATTCTGCGAGAAGGCCAGCA+TGG | 0.649764 | 7_1:+17162094 | Msa1012090:CDS |
| CATGAACCTAAAGAAAACAA+AGG | 0.659528 | 7_1:+17163291 | Msa1012090:CDS |
| AGCCTCACAAGAGAGACTCA+AGG | 0.664869 | 7_1:+17163708 | Msa1012090:CDS |
| AAAGCGTTGTGTACATGCCG+CGG | 0.666394 | 7_1:+17162039 | Msa1012090:CDS |
| TGTATGCAGCAAGAAGGGTG+AGG | 0.675322 | 7_1:-17163938 | None:intergenic |
| TATATTGGGAGAGAAAGCTA+AGG | 0.687081 | 7_1:+17160498 | Msa1012090:CDS |
| GCATAGGGCCAATCAGTTGG+GGG | 0.712704 | 7_1:-17164347 | None:intergenic |
| TTTGCAGTCCAAGGCCACAG+CGG | 0.725554 | 7_1:+17161621 | Msa1012090:intron |
| TTAGCTGTGACAAAGGCCAG+AGG | 0.735270 | 7_1:+17161240 | Msa1012090:CDS |
| GAAATCGACTACAACCGCTG+TGG | 0.746133 | 7_1:-17161635 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTGATGTAAAAAATAAAT+GGG | + | chr7_1:17159874-17159893 | Msa1012090:intron | 10.0% |
| !!! | AAATTGTTTTATTGATTTTA+AGG | + | chr7_1:17160031-17160050 | Msa1012090:intron | 10.0% |
| !!! | AATTGTTTTATTGATTTTAA+GGG | + | chr7_1:17160032-17160051 | Msa1012090:intron | 10.0% |
| !!! | ATAATATGATGATATTTTAT+AGG | - | chr7_1:17164534-17164553 | None:intergenic | 10.0% |
| !! | GAATTGATGTAAAAAATAAA+TGG | + | chr7_1:17159873-17159892 | Msa1012090:intron | 15.0% |
| !!! | AAATCAATAAAACAATTTTC+TGG | - | chr7_1:17160029-17160048 | None:intergenic | 15.0% |
| !!! | AAATTTCTTAGATTTTCTAT+AGG | + | chr7_1:17162771-17162790 | Msa1012090:intron | 15.0% |
| !! | AATAACATAGTAAATTATGA+TGG | - | chr7_1:17163460-17163479 | None:intergenic | 15.0% |
| !!! | CAAGTAAAATATTTAAGTTA+TGG | + | chr7_1:17163529-17163548 | Msa1012090:intron | 15.0% |
| !! | ATATGGTATAAGTATTTAAT+CGG | - | chr7_1:17164257-17164276 | None:intergenic | 15.0% |
| !!! | TTCAATTTTCGTTTTTGATT+TGG | + | chr7_1:17159497-17159516 | Msa1012090:intron | 20.0% |
| !!! | TTTAATTGATGTTTTTTTCC+TGG | + | chr7_1:17159612-17159631 | Msa1012090:intron | 20.0% |
| !!! | ATGTAAAAAATAAATGGGTT+GGG | + | chr7_1:17159879-17159898 | Msa1012090:intron | 20.0% |
| !! | CAATAACAATACTAATTACT+TGG | + | chr7_1:17159935-17159954 | Msa1012090:intron | 20.0% |
| !!! | AAATTCTGGAAAAACATTTT+TGG | - | chr7_1:17159970-17159989 | None:intergenic | 20.0% |
| !!! | GTTTTTCCAGAATTTTTTTT+TGG | + | chr7_1:17159975-17159994 | Msa1012090:intron | 20.0% |
| !!! | AAGGGTTTGATTTTTTTATT+AGG | + | chr7_1:17160050-17160069 | Msa1012090:intron | 20.0% |
| !!! | AGGGTTTGATTTTTTTATTA+GGG | + | chr7_1:17160051-17160070 | Msa1012090:intron | 20.0% |
| !!! | TTGTTTTGATTTTAAGAGAA+AGG | + | chr7_1:17160076-17160095 | Msa1012090:intron | 20.0% |
| !! | AGAGATAAAGTATGTTATAT+TGG | + | chr7_1:17160483-17160502 | Msa1012090:intron | 20.0% |
| !! | GAGATAAAGTATGTTATATT+GGG | + | chr7_1:17160484-17160503 | Msa1012090:intron | 20.0% |
| !! | TCCTAAATTAAATTGTTTCA+AGG | + | chr7_1:17160658-17160677 | Msa1012090:intron | 20.0% |
| !!! | TCCTTGAAACAATTTAATTT+AGG | - | chr7_1:17160662-17160681 | None:intergenic | 20.0% |
| !! | ATATAAGCACTTAATTAACA+TGG | + | chr7_1:17161403-17161422 | Msa1012090:intron | 20.0% |
| !! | CTACAGGAAAATAAAAAATT+AGG | - | chr7_1:17161429-17161448 | None:intergenic | 20.0% |
| !! | AAGTTGAAGTGTAAATTAAA+TGG | + | chr7_1:17161747-17161766 | Msa1012090:intron | 20.0% |
| !!! | GTTTTTAAAGCAATTTTTCA+TGG | + | chr7_1:17161854-17161873 | Msa1012090:intron | 20.0% |
| !!! | ACAAACATTCATATTTTAAG+TGG | - | chr7_1:17162474-17162493 | None:intergenic | 20.0% |
| !! | TTAAAATATGAATGTTTGTC+CGG | + | chr7_1:17162475-17162494 | Msa1012090:intron | 20.0% |
| !! | ATATTTGAATTAATGCCATT+TGG | - | chr7_1:17163559-17163578 | None:intergenic | 20.0% |
| !! | CATAGTAATAAAAAATAGCA+TGG | - | chr7_1:17163612-17163631 | None:intergenic | 20.0% |
| !! | ATAACAAACGAAATATTTGA+TGG | + | chr7_1:17164302-17164321 | Msa1012090:three_prime_UTR | 20.0% |
| !! | GCAAATTATTATAAGAGTAA+AGG | + | chr7_1:17164401-17164420 | Msa1012090:three_prime_UTR | 20.0% |
| !! | AGTAAAGGAAAGATAATAAT+AGG | + | chr7_1:17164416-17164435 | Msa1012090:three_prime_UTR | 20.0% |
| !! | GTAAAGGAAAGATAATAATA+GGG | + | chr7_1:17164417-17164436 | Msa1012090:three_prime_UTR | 20.0% |
| !! | ATGATACATGATATTAGAAA+AGG | + | chr7_1:17164474-17164493 | Msa1012090:three_prime_UTR | 20.0% |
| !!! | AAACAAAAAAAGGGTATTTG+TGG | - | chr7_1:17159528-17159547 | None:intergenic | 25.0% |
| !!! | ATACCCTTTTTTTGTTTGAT+TGG | + | chr7_1:17159531-17159550 | Msa1012090:intron | 25.0% |
| !!! | TACCCTTTTTTTGTTTGATT+GGG | + | chr7_1:17159532-17159551 | Msa1012090:intron | 25.0% |
| ! | AACCCAATCAAACAAAAAAA+GGG | - | chr7_1:17159537-17159556 | None:intergenic | 25.0% |
| ! | AAACCCAATCAAACAAAAAA+AGG | - | chr7_1:17159538-17159557 | None:intergenic | 25.0% |
| !!! | AATCGATGGTTTTTTTTTTG+TGG | + | chr7_1:17159644-17159663 | Msa1012090:intron | 25.0% |
| !!! | ATCGATGGTTTTTTTTTTGT+GGG | + | chr7_1:17159645-17159664 | Msa1012090:intron | 25.0% |
| ! | GATGTAAAAAATAAATGGGT+TGG | + | chr7_1:17159878-17159897 | Msa1012090:intron | 25.0% |
| ! | TCGAAACCAAAAAAAAATTC+TGG | - | chr7_1:17159984-17160003 | None:intergenic | 25.0% |
| !!! | GAATTTTTTTTTGGTTTCGA+TGG | + | chr7_1:17159984-17160003 | Msa1012090:intron | 25.0% |
| ! | TCTTATACTGCAATACTAAA+TGG | + | chr7_1:17160360-17160379 | Msa1012090:intron | 25.0% |
| ! | CTAGATATATGTAAAACACA+AGG | - | chr7_1:17160625-17160644 | None:intergenic | 25.0% |
| ! | TCAAGGAATATTGCAAAATA+TGG | + | chr7_1:17160675-17160694 | Msa1012090:intron | 25.0% |
| ! | CTAGATATAAGTAAAACACA+AGG | - | chr7_1:17160743-17160762 | None:intergenic | 25.0% |
| ! | TAGAAAACAAAGTTTACAAG+TGG | + | chr7_1:17160760-17160779 | Msa1012090:intron | 25.0% |
| ! | ATAAAAATGAACAAAAGCAG+AGG | - | chr7_1:17160885-17160904 | None:intergenic | 25.0% |
| ! | TTCTGTACTAAAATTCAACA+TGG | - | chr7_1:17161055-17161074 | None:intergenic | 25.0% |
| !!! | ATATTGGACAGGTTTTTTTT+TGG | + | chr7_1:17161307-17161326 | Msa1012090:intron | 25.0% |
| !!! | TATTGGACAGGTTTTTTTTT+GGG | + | chr7_1:17161308-17161327 | Msa1012090:intron | 25.0% |
| !!! | TTTTTTTTTGGGAGAGATTA+TGG | + | chr7_1:17161319-17161338 | Msa1012090:intron | 25.0% |
| ! | TTTAGTATAGGTATTTCAAG+AGG | - | chr7_1:17161470-17161489 | None:intergenic | 25.0% |
| ! | ATAGTAAGGTCATTTAGTAT+AGG | - | chr7_1:17161482-17161501 | None:intergenic | 25.0% |
| ! | TATACTAAATGACCTTACTA+TGG | + | chr7_1:17161481-17161500 | Msa1012090:CDS | 25.0% |
| ! | TGAATTAGCAATAACAAACT+TGG | + | chr7_1:17161538-17161557 | Msa1012090:intron | 25.0% |
| ! | AGTATATGACAATGTAAAAC+AGG | + | chr7_1:17161672-17161691 | Msa1012090:CDS | 25.0% |
| ! | CTTCAACTTAAATGCATATT+TGG | - | chr7_1:17161736-17161755 | None:intergenic | 25.0% |
| ! | AGTGTAAATTAAATGGTTCT+TGG | + | chr7_1:17161754-17161773 | Msa1012090:intron | 25.0% |
| ! | CATAATATAGTCTTCAATCT+TGG | - | chr7_1:17161915-17161934 | None:intergenic | 25.0% |
| !! | TTGTTTCTTCTTCACTATAT+AGG | + | chr7_1:17161998-17162017 | Msa1012090:intron | 25.0% |
| !!! | CTAAACCATTTGTTCTTTTT+TGG | + | chr7_1:17162267-17162286 | Msa1012090:intron | 25.0% |
| ! | AAATGCCAAAAAAGAACAAA+TGG | - | chr7_1:17162275-17162294 | None:intergenic | 25.0% |
| !!! | ATTTGTTCTTTTTTGGCATT+TGG | + | chr7_1:17162274-17162293 | Msa1012090:intron | 25.0% |
| ! | CTGTAATAATATTGATCCTA+TGG | - | chr7_1:17162341-17162360 | None:intergenic | 25.0% |
| ! | GTTTCAAAAAAACCTAATGT+CGG | + | chr7_1:17162711-17162730 | Msa1012090:intron | 25.0% |
| ! | TCTAAGAAATTTCTTTACCA+TGG | - | chr7_1:17162763-17162782 | None:intergenic | 25.0% |
| !!! | ATAGCTAAGCCATTTTTTAA+AGG | + | chr7_1:17163038-17163057 | Msa1012090:intron | 25.0% |
| !!! | TGATATCCTTTGTTTTCTTT+AGG | - | chr7_1:17163300-17163319 | None:intergenic | 25.0% |
| ! | ATGCAAATTTACTTCAATAC+TGG | - | chr7_1:17163507-17163526 | None:intergenic | 25.0% |
| ! | TTAAGTTATGGAAAACCAAA+TGG | + | chr7_1:17163541-17163560 | Msa1012090:intron | 25.0% |
| ! | GTTATCTTTAAACTTATTCC+AGG | + | chr7_1:17163648-17163667 | Msa1012090:intron | 25.0% |
| ! | AATCAACTATCTTCTGTTAT+AGG | - | chr7_1:17163764-17163783 | None:intergenic | 25.0% |
| ! | AACAGAAGATAGTTGATTAT+TGG | + | chr7_1:17163766-17163785 | Msa1012090:three_prime_UTR | 25.0% |
| !!! | ATCTTTTTCGAGAAATTAGA+AGG | + | chr7_1:17163858-17163877 | Msa1012090:three_prime_UTR | 25.0% |
| ! | GACAAAATACAATTACTATG+AGG | + | chr7_1:17164374-17164393 | Msa1012090:three_prime_UTR | 25.0% |
| ! | TATATGAGAAACTATGAACT+TGG | + | chr7_1:17164562-17164581 | Msa1012090:three_prime_UTR | 25.0% |
| AAGCTTCAATTACTCAACAA+TGG | - | chr7_1:17159399-17159418 | None:intergenic | 30.0% | |
| !!! | GTTTTTTTTTTGTGGGTTTC+TGG | + | chr7_1:17159652-17159671 | Msa1012090:intron | 30.0% |
| CAAGTCTACATTCTGTTTAT+AGG | + | chr7_1:17160227-17160246 | Msa1012090:intron | 30.0% | |
| ATGCTCCATGTATTAAACTT+TGG | + | chr7_1:17160267-17160286 | Msa1012090:intron | 30.0% | |
| AGACACCAAAGTTTAATACA+TGG | - | chr7_1:17160275-17160294 | None:intergenic | 30.0% | |
| AACCTTATGACATCTATACA+TGG | - | chr7_1:17160401-17160420 | None:intergenic | 30.0% | |
| AACCATGTATAGATGTCATA+AGG | + | chr7_1:17160436-17160455 | Msa1012090:intron | 30.0% | |
| TTCCTTATGACATCTATACA+TGG | - | chr7_1:17160441-17160460 | None:intergenic | 30.0% | |
| TGTATAGATGTCATAAGGAA+AGG | + | chr7_1:17160441-17160460 | Msa1012090:intron | 30.0% | |
| GTATAGATGTCATAAGGAAA+GGG | + | chr7_1:17160442-17160461 | Msa1012090:intron | 30.0% | |
| ! | TGTTGTTTGTAATGTGAAGA+TGG | + | chr7_1:17161094-17161113 | Msa1012090:intron | 30.0% |
| CTATTGATACTCAACATGTT+GGG | + | chr7_1:17161280-17161299 | Msa1012090:CDS | 30.0% | |
| TATTGATACTCAACATGTTG+GGG | + | chr7_1:17161281-17161300 | Msa1012090:CDS | 30.0% | |
| !! | TTTATTTTCCTGTAGCTTTG+TGG | + | chr7_1:17161434-17161453 | Msa1012090:intron | 30.0% |
| ! | AAATGACCTTACTATGGTTT+TGG | + | chr7_1:17161487-17161506 | Msa1012090:CDS | 30.0% |
| ! | AATGACCTTACTATGGTTTT+GGG | + | chr7_1:17161488-17161507 | Msa1012090:CDS | 30.0% |
| TGTAAAACAGGTTTGAATTC+TGG | + | chr7_1:17161684-17161703 | Msa1012090:intron | 30.0% | |
| AAGACTGAGAGTTTATTTAG+TGG | + | chr7_1:17161779-17161798 | Msa1012090:intron | 30.0% | |
| AGACTGAGAGTTTATTTAGT+GGG | + | chr7_1:17161780-17161799 | Msa1012090:intron | 30.0% | |
| GATTCTTAATTAGCTAGCAA+TGG | + | chr7_1:17161802-17161821 | Msa1012090:intron | 30.0% | |
| ! | AAGCAATTTTTCATGGCTAA+AGG | + | chr7_1:17161861-17161880 | Msa1012090:intron | 30.0% |
| ! | TGTAGAATTATGCTGTGTTT+TGG | + | chr7_1:17161958-17161977 | Msa1012090:intron | 30.0% |
| AGTGAAGAAGAAACAATCAA+TGG | - | chr7_1:17161994-17162013 | None:intergenic | 30.0% | |
| ACTATATAGGCAACAACATT+TGG | + | chr7_1:17162011-17162030 | Msa1012090:intron | 30.0% | |
| TAGAGTATGAAATAACTGCA+CGG | - | chr7_1:17162214-17162233 | None:intergenic | 30.0% | |
| ATTTGGTTAACTATAACGTC+AGG | + | chr7_1:17162291-17162310 | Msa1012090:intron | 30.0% | |
| TTTGGTTAACTATAACGTCA+GGG | + | chr7_1:17162292-17162311 | Msa1012090:intron | 30.0% | |
| AGGATCAATATTATTACAGC+AGG | + | chr7_1:17162342-17162361 | Msa1012090:CDS | 30.0% | |
| GTTGTACTTGACAAATTAGA+AGG | - | chr7_1:17162554-17162573 | None:intergenic | 30.0% | |
| TAGAGAAATTACACATTTCC+TGG | + | chr7_1:17162678-17162697 | Msa1012090:intron | 30.0% | |
| ATGTCCATCATCTAATGTAT+GGG | + | chr7_1:17162818-17162837 | Msa1012090:intron | 30.0% | |
| ACACAATGAAACAAATCAGA+AGG | - | chr7_1:17162862-17162881 | None:intergenic | 30.0% | |
| TTTGTTTCATTGTGTTCTTC+AGG | + | chr7_1:17162867-17162886 | Msa1012090:intron | 30.0% | |
| TAAATTTGCAACTGTATCAG+AGG | - | chr7_1:17162928-17162947 | None:intergenic | 30.0% | |
| AAAATGGCTTAGCTATGAAA+AGG | - | chr7_1:17163034-17163053 | None:intergenic | 30.0% | |
| ! | CACAGTTTGCCTTTAAAAAA+TGG | - | chr7_1:17163050-17163069 | None:intergenic | 30.0% |
| GCTATAAAGTTCTTGTCATT+TGG | + | chr7_1:17163069-17163088 | Msa1012090:intron | 30.0% | |
| ATCTTAACACATTACAGACA+AGG | - | chr7_1:17163151-17163170 | None:intergenic | 30.0% | |
| ! | ACTGACTTTGATCTGAATTT+GGG | + | chr7_1:17163252-17163271 | Msa1012090:intron | 30.0% |
| !! | TTTTCTTTAGGTTCATGTAC+TGG | - | chr7_1:17163288-17163307 | None:intergenic | 30.0% |
| CATGAACCTAAAGAAAACAA+AGG | + | chr7_1:17163291-17163310 | Msa1012090:CDS | 30.0% | |
| ! | TTCAAACCTGAGTTTGTTTA+TGG | + | chr7_1:17163734-17163753 | Msa1012090:exon | 30.0% |
| TACATAGCAGAAATTCTTTG+AGG | + | chr7_1:17163813-17163832 | Msa1012090:three_prime_UTR | 30.0% | |
| TCTGAAGAAGTTAAAATCTC+TGG | - | chr7_1:17163964-17163983 | None:intergenic | 30.0% | |
| ! | TTTAACTTCTTCAGATTCAG+TGG | + | chr7_1:17163969-17163988 | Msa1012090:three_prime_UTR | 30.0% |
| !! | GAAATATTTGATGGTGCTAA+AGG | + | chr7_1:17164311-17164330 | Msa1012090:three_prime_UTR | 30.0% |
| TAATAATAGGGTTTCCAGAT+AGG | + | chr7_1:17164429-17164448 | Msa1012090:three_prime_UTR | 30.0% | |
| ATCATGTATCTCCTTATGAT+AGG | - | chr7_1:17164459-17164478 | None:intergenic | 30.0% | |
| ACAAATAGTCTGCAATGAAA+AGG | + | chr7_1:17164508-17164527 | Msa1012090:three_prime_UTR | 30.0% | |
| CAAGACTTTCAATATATGCA+TGG | + | chr7_1:17164651-17164670 | Msa1012090:three_prime_UTR | 30.0% | |
| !! | ATGGAGGTTTTGTGAGTTAT+GGG | - | chr7_1:17159380-17159399 | None:intergenic | 35.0% |
| !! | AATGGAGGTTTTGTGAGTTA+TGG | - | chr7_1:17159381-17159400 | None:intergenic | 35.0% |
| CTTCAATTACTCAACAATGG+AGG | - | chr7_1:17159396-17159415 | None:intergenic | 35.0% | |
| ACAGAAGTTACAGAGAATCA+AGG | + | chr7_1:17159461-17159480 | Msa1012090:intron | 35.0% | |
| ! | CCATCGATTAAGAAAAATCC+AGG | - | chr7_1:17159633-17159652 | None:intergenic | 35.0% |
| ! | CCTGGATTTTTCTTAATCGA+TGG | + | chr7_1:17159630-17159649 | Msa1012090:intron | 35.0% |
| AAAGAAGATTGATGCAGATG+AGG | + | chr7_1:17159688-17159707 | Msa1012090:CDS | 35.0% | |
| ATGGAAAGAAGAAGGAAGAA+GGG | + | chr7_1:17159726-17159745 | Msa1012090:CDS | 35.0% | |
| !! | AAAAATAAATGGGTTGGGAG+TGG | + | chr7_1:17159884-17159903 | Msa1012090:intron | 35.0% |
| !!! | TTTTGGTTTCGATGGTGATT+AGG | + | chr7_1:17159992-17160011 | Msa1012090:intron | 35.0% |
| ! | TTTGGTTTCGATGGTGATTA+GGG | + | chr7_1:17159993-17160012 | Msa1012090:intron | 35.0% |
| !! | TGAGTTGTGTCACTTTGTTT+AGG | + | chr7_1:17160301-17160320 | Msa1012090:intron | 35.0% |
| !! | GAGTTGTGTCACTTTGTTTA+GGG | + | chr7_1:17160302-17160321 | Msa1012090:intron | 35.0% |
| GACCATGTATAGATGTCATA+AGG | + | chr7_1:17160396-17160415 | Msa1012090:intron | 35.0% | |
| TATATTGGGAGAGAAAGCTA+AGG | + | chr7_1:17160498-17160517 | Msa1012090:CDS | 35.0% | |
| GAATCCTCTGAATTATACTC+AGG | + | chr7_1:17160579-17160598 | Msa1012090:CDS | 35.0% | |
| CTAACCTGAGTATAATTCAG+AGG | - | chr7_1:17160586-17160605 | None:intergenic | 35.0% | |
| AATATGGACATTGCTCTTGA+TGG | + | chr7_1:17160691-17160710 | Msa1012090:intron | 35.0% | |
| TTATGATACCTGGATTCCAT+AGG | - | chr7_1:17160859-17160878 | None:intergenic | 35.0% | |
| ! | TCATTTTCATGCAGTAGCTT+TGG | + | chr7_1:17160934-17160953 | Msa1012090:intron | 35.0% |
| GATTCTACTGTTTATGAGCT+TGG | + | chr7_1:17161026-17161045 | Msa1012090:CDS | 35.0% | |
| TTGTAATGTGAAGATGGAAC+AGG | + | chr7_1:17161100-17161119 | Msa1012090:intron | 35.0% | |
| ! | TCAATTTTCAACACCCTTTG+TGG | + | chr7_1:17161167-17161186 | Msa1012090:intron | 35.0% |
| ATTACAACCTGTTCCACAAA+GGG | - | chr7_1:17161183-17161202 | None:intergenic | 35.0% | |
| TATTACAACCTGTTCCACAA+AGG | - | chr7_1:17161184-17161203 | None:intergenic | 35.0% | |
| GTGGAACAGGTTGTAATAAA+TGG | + | chr7_1:17161186-17161205 | Msa1012090:intron | 35.0% | |
| TGTAATAAATGGAGCAGCAA+AGG | + | chr7_1:17161197-17161216 | Msa1012090:CDS | 35.0% | |
| GCTATTGATACTCAACATGT+TGG | + | chr7_1:17161279-17161298 | Msa1012090:CDS | 35.0% | |
| CATTGTCATATACTGCAGAA+GGG | - | chr7_1:17161666-17161685 | None:intergenic | 35.0% | |
| ACATTGTCATATACTGCAGA+AGG | - | chr7_1:17161667-17161686 | None:intergenic | 35.0% | |
| TCAACATACTTATATGCAGC+TGG | + | chr7_1:17161710-17161729 | Msa1012090:intron | 35.0% | |
| AGGAAACAACTTCAAGTGAT+AGG | + | chr7_1:17161881-17161900 | Msa1012090:intron | 35.0% | |
| ACTTCAAGTGATAGGACAAT+AGG | + | chr7_1:17161889-17161908 | Msa1012090:intron | 35.0% | |
| ! | TCTTACATTTGCATTAGCCT+TGG | - | chr7_1:17162416-17162435 | None:intergenic | 35.0% |
| CAAACCAAATTGTTATCGGT+AGG | - | chr7_1:17162737-17162756 | None:intergenic | 35.0% | |
| GCAGCAAACCAAATTGTTAT+CGG | - | chr7_1:17162741-17162760 | None:intergenic | 35.0% | |
| !! | CATACATTAGATGATGGACA+TGG | - | chr7_1:17162819-17162838 | None:intergenic | 35.0% |
| CATGTCCATCATCTAATGTA+TGG | + | chr7_1:17162817-17162836 | Msa1012090:intron | 35.0% | |
| AGATCCCATACATTAGATGA+TGG | - | chr7_1:17162825-17162844 | None:intergenic | 35.0% | |
| GGGAAAGACAACTCAAAAAA+TGG | - | chr7_1:17162958-17162977 | None:intergenic | 35.0% | |
| ATATTCCACTCCTTGATCAA+CGG | - | chr7_1:17162979-17162998 | None:intergenic | 35.0% | |
| ! | AAAGTTCTTGTCATTTGGTG+AGG | + | chr7_1:17163074-17163093 | Msa1012090:intron | 35.0% |
| ! | AAGTTCTTGTCATTTGGTGA+GGG | + | chr7_1:17163075-17163094 | Msa1012090:intron | 35.0% |
| CCAGAAAGAGAGAAACATAT+TGG | - | chr7_1:17163179-17163198 | None:intergenic | 35.0% | |
| CCAATATGTTTCTCTCTTTC+TGG | + | chr7_1:17163176-17163195 | Msa1012090:intron | 35.0% | |
| ! | TTTCTCTCTTTCTGGAAATC+AGG | + | chr7_1:17163184-17163203 | Msa1012090:intron | 35.0% |
| ! | TTCTCTCTTTCTGGAAATCA+GGG | + | chr7_1:17163185-17163204 | Msa1012090:intron | 35.0% |
| !! | AAAGCAGCTCTAAAATGCAA+GGG | + | chr7_1:17163216-17163235 | Msa1012090:intron | 35.0% |
| ! | GACTGACTTTGATCTGAATT+TGG | + | chr7_1:17163251-17163270 | Msa1012090:intron | 35.0% |
| TATACCTTTAAACTCCTTCG+AGG | - | chr7_1:17163355-17163374 | None:intergenic | 35.0% | |
| ! | CTGGAAGAAATTGCTTTGAA+AGG | - | chr7_1:17163488-17163507 | None:intergenic | 35.0% |
| GCATGGAAATCTTATGACAT+AGG | - | chr7_1:17163595-17163614 | None:intergenic | 35.0% | |
| TTATTCCAGGTTTCATCCAT+GGG | + | chr7_1:17163661-17163680 | Msa1012090:intron | 35.0% | |
| GCAGATGATGATTACATATC+AGG | + | chr7_1:17164132-17164151 | Msa1012090:intron | 35.0% | |
| ! | TGTATTTTGTCCCATGCATA+GGG | - | chr7_1:17164365-17164384 | None:intergenic | 35.0% |
| ! | TTGTATTTTGTCCCATGCAT+AGG | - | chr7_1:17164366-17164385 | None:intergenic | 35.0% |
| TTATGATAGGCAATCCTATC+TGG | - | chr7_1:17164446-17164465 | None:intergenic | 35.0% | |
| AGATAGGATTGCCTATCATA+AGG | + | chr7_1:17164445-17164464 | Msa1012090:three_prime_UTR | 35.0% | |
| TGATATTAGAAAAGGATCCC+TGG | + | chr7_1:17164482-17164501 | Msa1012090:three_prime_UTR | 35.0% | |
| ! | ATGCAAGTTGAGGAAGAAGA+AGG | - | chr7_1:17159346-17159365 | None:intergenic | 40.0% |
| TTTGTGAGTTATGGGTGAGA+GGG | - | chr7_1:17159372-17159391 | None:intergenic | 40.0% | |
| ! | TTTTGTGAGTTATGGGTGAG+AGG | - | chr7_1:17159373-17159392 | None:intergenic | 40.0% |
| TACAGAGAATCAAGGTGAGT+TGG | + | chr7_1:17159469-17159488 | Msa1012090:intron | 40.0% | |
| ACAGAGAATCAAGGTGAGTT+GGG | + | chr7_1:17159470-17159489 | Msa1012090:intron | 40.0% | |
| GAGGAAAGAATTGATGCAGA+TGG | + | chr7_1:17159707-17159726 | Msa1012090:CDS | 40.0% | |
| TGATGCAGATGGAAAGAAGA+AGG | + | chr7_1:17159718-17159737 | Msa1012090:CDS | 40.0% | |
| GATGGAAAGAAGAAGGAAGA+AGG | + | chr7_1:17159725-17159744 | Msa1012090:CDS | 40.0% | |
| GAGACATTACCTCAAACACT+TGG | - | chr7_1:17159916-17159935 | None:intergenic | 40.0% | |
| TAAACTCACGACAGGTAATG+AGG | + | chr7_1:17160821-17160840 | Msa1012090:intron | 40.0% | |
| TTTGATTCCCATAAAGCGTG+TGG | + | chr7_1:17160998-17161017 | Msa1012090:CDS | 40.0% | |
| AATAAATGGAGCAGCAAAGG+AGG | + | chr7_1:17161200-17161219 | Msa1012090:CDS | 40.0% | |
| AGCAGTATTAGCTGTGACAA+AGG | + | chr7_1:17161233-17161252 | Msa1012090:CDS | 40.0% | |
| CAACATGTTGGGGAAGATAT+TGG | + | chr7_1:17161291-17161310 | Msa1012090:CDS | 40.0% | |
| TAGAGCCCAAAACCATAGTA+AGG | - | chr7_1:17161496-17161515 | None:intergenic | 40.0% | |
| ! | ATTGATCCTATGGAAAGCGT+TGG | - | chr7_1:17162331-17162350 | None:intergenic | 40.0% |
| ATTCCACAATTTCGACGTTG+CGG | - | chr7_1:17162393-17162412 | None:intergenic | 40.0% | |
| ACACCTGATAAGATCACATC+CGG | - | chr7_1:17162497-17162516 | None:intergenic | 40.0% | |
| ! | TTTGAAACAGTGCACATACC+AGG | - | chr7_1:17162699-17162718 | None:intergenic | 40.0% |
| !! | AACAATTTGGTTTGCTGCCA+TGG | + | chr7_1:17162743-17162762 | Msa1012090:intron | 40.0% |
| TATTCCACTCCTTGATCAAC+GGG | - | chr7_1:17162978-17162997 | None:intergenic | 40.0% | |
| ACTACAACACATGCACAATG+GGG | - | chr7_1:17163105-17163124 | None:intergenic | 40.0% | |
| GACTACAACACATGCACAAT+GGG | - | chr7_1:17163106-17163125 | None:intergenic | 40.0% | |
| AGACTACAACACATGCACAA+TGG | - | chr7_1:17163107-17163126 | None:intergenic | 40.0% | |
| !! | CAAAGCAGCTCTAAAATGCA+AGG | + | chr7_1:17163215-17163234 | Msa1012090:intron | 40.0% |
| ! | TCTAAAATGCAAGGGAAGAG+AGG | + | chr7_1:17163224-17163243 | Msa1012090:intron | 40.0% |
| CTTTGATCTGAATTTGGGCA+TGG | + | chr7_1:17163257-17163276 | Msa1012090:intron | 40.0% | |
| CTTATTCCAGGTTTCATCCA+TGG | + | chr7_1:17163660-17163679 | Msa1012090:intron | 40.0% | |
| TAGAAGGATTCATCACGTGT+AGG | + | chr7_1:17163874-17163893 | Msa1012090:three_prime_UTR | 40.0% | |
| GGTGAGGTCTAAATCTTTCA+AGG | - | chr7_1:17163925-17163944 | None:intergenic | 40.0% | |
| CAGATTCAGTGGAATCTGTA+AGG | + | chr7_1:17163980-17163999 | Msa1012090:three_prime_UTR | 40.0% | |
| TGTTCTATTGCAACCTGCTT+AGG | + | chr7_1:17164090-17164109 | Msa1012090:intron | 40.0% | |
| ATTAGAGAGCTAACCTAAGC+AGG | - | chr7_1:17164106-17164125 | None:intergenic | 40.0% | |
| GAGCTATTTGCAAGGCTATA+TGG | - | chr7_1:17164274-17164293 | None:intergenic | 40.0% | |
| ! | TAGCCTTGCAAATAGCTCAA+TGG | + | chr7_1:17164276-17164295 | Msa1012090:three_prime_UTR | 40.0% |
| TGCAGACTATTTGTAAGCCA+GGG | - | chr7_1:17164502-17164521 | None:intergenic | 40.0% | |
| TTGCAGACTATTTGTAAGCC+AGG | - | chr7_1:17164503-17164522 | None:intergenic | 40.0% | |
| AGAAGAAGAGGAAACGGGTA+CGG | + | chr7_1:17159275-17159294 | Msa1012090:intron | 45.0% | |
| ! | CAAGTTGAGGAAGAAGAAGG+AGG | - | chr7_1:17159343-17159362 | None:intergenic | 45.0% |
| GGGAATGCATTGTTCAAAGC+TGG | + | chr7_1:17159746-17159765 | Msa1012090:CDS | 45.0% | |
| GTTTCGATGGTGATTAGGGT+TGG | + | chr7_1:17159997-17160016 | Msa1012090:intron | 45.0% | |
| GTCATCGATAAACTCACGAC+AGG | + | chr7_1:17160813-17160832 | Msa1012090:CDS | 45.0% | |
| GCAGAGGAGTTTATGATACC+TGG | - | chr7_1:17160869-17160888 | None:intergenic | 45.0% | |
| TCCTGATCCACACGCTTTAT+GGG | - | chr7_1:17161008-17161027 | None:intergenic | 45.0% | |
| ATCCTGATCCACACGCTTTA+TGG | - | chr7_1:17161009-17161028 | None:intergenic | 45.0% | |
| TTCAACACCCTTTGTGGAAC+AGG | + | chr7_1:17161173-17161192 | Msa1012090:intron | 45.0% | |
| TCCAGAAACTTCCATTCCTC+TGG | - | chr7_1:17161259-17161278 | None:intergenic | 45.0% | |
| TGTTGGGGAAGATATTGGAC+AGG | + | chr7_1:17161296-17161315 | Msa1012090:CDS | 45.0% | |
| !! | TTTCCTGTAGCTTTGTGGCA+TGG | + | chr7_1:17161439-17161458 | Msa1012090:intron | 45.0% |
| !!! | GGTTTTGGGCTCTATATCTC+AGG | + | chr7_1:17161502-17161521 | Msa1012090:CDS | 45.0% |
| GAATTGCGATTTGCAGTCCA+AGG | + | chr7_1:17161612-17161631 | Msa1012090:intron | 45.0% | |
| ACCGTATCCAATTTGATCCG+CGG | - | chr7_1:17162059-17162078 | None:intergenic | 45.0% | |
| ATTGTCTGCATTCTGCGAGA+AGG | + | chr7_1:17162085-17162104 | Msa1012090:CDS | 45.0% | |
| ! | ACTATAACGTCAGGGTGTCT+TGG | + | chr7_1:17162300-17162319 | Msa1012090:intron | 45.0% |
| CAATTTCGACGTTGCGGTAA+TGG | - | chr7_1:17162387-17162406 | None:intergenic | 45.0% | |
| TTACCGCAACGTCGAAATTG+TGG | + | chr7_1:17162387-17162406 | Msa1012090:CDS | 45.0% | |
| CGTCGAAATTGTGGAATCCA+AGG | + | chr7_1:17162396-17162415 | Msa1012090:CDS | 45.0% | |
| TGTCCGGATGTGATCTTATC+AGG | + | chr7_1:17162491-17162510 | Msa1012090:intron | 45.0% | |
| TCGGCCTACCGATAACAATT+TGG | + | chr7_1:17162730-17162749 | Msa1012090:intron | 45.0% | |
| GTTGTCTTTCCCGTTGATCA+AGG | + | chr7_1:17162966-17162985 | Msa1012090:intron | 45.0% | |
| TTAAACTCCTTCGAGGATGC+AGG | - | chr7_1:17163348-17163367 | None:intergenic | 45.0% | |
| GCATCCTCGAAGGAGTTTAA+AGG | + | chr7_1:17163348-17163367 | Msa1012090:CDS | 45.0% | |
| TTCCTTGAGTCTCTCTTGTG+AGG | - | chr7_1:17163713-17163732 | None:intergenic | 45.0% | |
| GGCAAGCCATAAACAAACTC+AGG | - | chr7_1:17163743-17163762 | None:intergenic | 45.0% | |
| !! | TGTAGGAGCATTCCCTCATA+AGG | + | chr7_1:17163891-17163910 | Msa1012090:three_prime_UTR | 45.0% |
| ! | AAGGATGTGCAGCCTTATGA+GGG | - | chr7_1:17163906-17163925 | None:intergenic | 45.0% |
| TCTGGTGTATGCAGCAAGAA+GGG | - | chr7_1:17163946-17163965 | None:intergenic | 45.0% | |
| ATAGCCTCTTCACTTAGGCT+TGG | - | chr7_1:17164025-17164044 | None:intergenic | 45.0% | |
| CTTGCATAGCCTCTTCACTT+AGG | - | chr7_1:17164030-17164049 | None:intergenic | 45.0% | |
| CACTGATACAAGAGCCTTGA+TGG | + | chr7_1:17164166-17164185 | Msa1012090:three_prime_UTR | 45.0% | |
| !! | TCCAGCTTTGAACTCCATCA+AGG | - | chr7_1:17164183-17164202 | None:intergenic | 45.0% |
| TGGAGTTCAAAGCTGGAGTA+AGG | + | chr7_1:17164186-17164205 | Msa1012090:three_prime_UTR | 45.0% | |
| CTGCCATTGAGCTATTTGCA+AGG | - | chr7_1:17164282-17164301 | None:intergenic | 45.0% | |
| AATATGCTCCCCCAACTGAT+TGG | + | chr7_1:17164339-17164358 | Msa1012090:three_prime_UTR | 45.0% | |
| ATGCATAGGGCCAATCAGTT+GGG | - | chr7_1:17164352-17164371 | None:intergenic | 45.0% | |
| ! | AACTGATTGGCCCTATGCAT+GGG | + | chr7_1:17164352-17164371 | Msa1012090:three_prime_UTR | 45.0% |
| !!! | TTTTACTAATATATTAAATT+TGG | - | chr7_1:17163400-17163419 | None:intergenic | 5.0% |
| GAAGAAGAGGAAACGGGTAC+GGG | + | chr7_1:17159276-17159295 | Msa1012090:intron | 50.0% | |
| ! | GAGAGGGAGTATGCAAGTTG+AGG | - | chr7_1:17159356-17159375 | None:intergenic | 50.0% |
| TGGCACTCACCAAGTGTTTG+AGG | + | chr7_1:17159904-17159923 | Msa1012090:intron | 50.0% | |
| TCCCATAAAGCGTGTGGATC+AGG | + | chr7_1:17161004-17161023 | Msa1012090:CDS | 50.0% | |
| AATGGAGCAGCAAAGGAGGT+AGG | + | chr7_1:17161204-17161223 | Msa1012090:CDS | 50.0% | |
| TTAGCTGTGACAAAGGCCAG+AGG | + | chr7_1:17161240-17161259 | Msa1012090:CDS | 50.0% | |
| TGTGACAAAGGCCAGAGGAA+TGG | + | chr7_1:17161245-17161264 | Msa1012090:CDS | 50.0% | |
| GCCAGAGGAATGGAAGTTTC+TGG | + | chr7_1:17161255-17161274 | Msa1012090:CDS | 50.0% | |
| CTTCCATGCCACAAAGCTAC+AGG | - | chr7_1:17161445-17161464 | None:intergenic | 50.0% | |
| GAAATCGACTACAACCGCTG+TGG | - | chr7_1:17161638-17161657 | None:intergenic | 50.0% | |
| !! | AAAGCGTTGTGTACATGCCG+CGG | + | chr7_1:17162039-17162058 | Msa1012090:CDS | 50.0% |
| GTACATGCCGCGGATCAAAT+TGG | + | chr7_1:17162049-17162068 | Msa1012090:CDS | 50.0% | |
| GCCGCGGATCAAATTGGATA+CGG | + | chr7_1:17162055-17162074 | Msa1012090:CDS | 50.0% | |
| GTTGCTCCAACGCTTTCCAT+AGG | + | chr7_1:17162322-17162341 | Msa1012090:CDS | 50.0% | |
| GTTATCGGTAGGCCGACATT+AGG | - | chr7_1:17162726-17162745 | None:intergenic | 50.0% | |
| CTTTCCCGTTGATCAAGGAG+TGG | + | chr7_1:17162971-17162990 | Msa1012090:intron | 50.0% | |
| CAACACATGCACAATGGGGT+TGG | - | chr7_1:17163101-17163120 | None:intergenic | 50.0% | |
| CTTACAACCTGCATCCTCGA+AGG | + | chr7_1:17163338-17163357 | Msa1012090:CDS | 50.0% | |
| AAGAGCCCATGGATGAAACC+TGG | - | chr7_1:17163669-17163688 | None:intergenic | 50.0% | |
| TTCATCCATGGGCTCTTCAC+AGG | + | chr7_1:17163672-17163691 | Msa1012090:CDS | 50.0% | |
| AGCCTCACAAGAGAGACTCA+AGG | + | chr7_1:17163708-17163727 | Msa1012090:CDS | 50.0% | |
| ! | CAAGGATGTGCAGCCTTATG+AGG | - | chr7_1:17163907-17163926 | None:intergenic | 50.0% |
| TGTATGCAGCAAGAAGGGTG+AGG | - | chr7_1:17163941-17163960 | None:intergenic | 50.0% | |
| CTCTGGTGTATGCAGCAAGA+AGG | - | chr7_1:17163947-17163966 | None:intergenic | 50.0% | |
| TGCTCCAAGCCTAAGTGAAG+AGG | + | chr7_1:17164018-17164037 | Msa1012090:three_prime_UTR | 50.0% | |
| GCCTTGATGGAGTTCAAAGC+TGG | + | chr7_1:17164179-17164198 | Msa1012090:three_prime_UTR | 50.0% | |
| TGCATAGGGCCAATCAGTTG+GGG | - | chr7_1:17164351-17164370 | None:intergenic | 50.0% | |
| CATGCATAGGGCCAATCAGT+TGG | - | chr7_1:17164353-17164372 | None:intergenic | 50.0% | |
| ! | CAACTGATTGGCCCTATGCA+TGG | + | chr7_1:17164351-17164370 | Msa1012090:three_prime_UTR | 50.0% |
| ACGGGTACGGGAGAAAGAAG+AGG | + | chr7_1:17159288-17159307 | Msa1012090:intron | 55.0% | |
| CGGGTACGGGAGAAAGAAGA+GGG | + | chr7_1:17159289-17159308 | Msa1012090:intron | 55.0% | |
| GGGTACGGGAGAAAGAAGAG+GGG | + | chr7_1:17159290-17159309 | Msa1012090:intron | 55.0% | |
| GAGGACTTCTGAGTCGCCTA+TGG | + | chr7_1:17160840-17160859 | Msa1012090:intron | 55.0% | |
| CTGAGTCGCCTATGGAATCC+AGG | + | chr7_1:17160848-17160867 | Msa1012090:intron | 55.0% | |
| TTTGCAGTCCAAGGCCACAG+CGG | + | chr7_1:17161621-17161640 | Msa1012090:intron | 55.0% | |
| ATTCTGCGAGAAGGCCAGCA+TGG | + | chr7_1:17162094-17162113 | Msa1012090:CDS | 55.0% | |
| AAGGCCAGCATGGTGAGCAA+GGG | + | chr7_1:17162104-17162123 | Msa1012090:intron | 55.0% | |
| CACTTCCTGTGAAGAGCCCA+TGG | - | chr7_1:17163680-17163699 | None:intergenic | 55.0% | |
| CATGGGCTCTTCACAGGAAG+TGG | + | chr7_1:17163678-17163697 | Msa1012090:CDS | 55.0% | |
| GCATAGGGCCAATCAGTTGG+GGG | - | chr7_1:17164350-17164369 | None:intergenic | 55.0% | |
| GACTACAACCGCTGTGGCCT+TGG | - | chr7_1:17161632-17161651 | None:intergenic | 60.0% | |
| GAAGGCCAGCATGGTGAGCA+AGG | + | chr7_1:17162103-17162122 | Msa1012090:intron | 60.0% | |
| AGGCCAGCATGGTGAGCAAG+GGG | + | chr7_1:17162105-17162124 | Msa1012090:intron | 60.0% | |
| TCACCCCTTGCTCACCATGC+TGG | - | chr7_1:17162111-17162130 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 17159272 | 17164674 | 17159272 | ID=Msa1012090;Name=Msa1012090 |
| chr7_1 | mRNA | 17159272 | 17164674 | 17159272 | ID=Msa1012090-mRNA-1;Parent=Msa1012090;Name=Msa1012090-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|0.58|0.61|1|0.91|0.84|13|857|330 |
| chr7_1 | exon | 17159272 | 17159291 | 17159272 | ID=Msa1012090-mRNA-1:exon:4283;Parent=Msa1012090-mRNA-1 |
| chr7_1 | exon | 17159688 | 17159767 | 17159688 | ID=Msa1012090-mRNA-1:exon:4284;Parent=Msa1012090-mRNA-1 |
| chr7_1 | exon | 17160485 | 17160600 | 17160485 | ID=Msa1012090-mRNA-1:exon:4285;Parent=Msa1012090-mRNA-1 |
| chr7_1 | exon | 17160763 | 17160834 | 17160763 | ID=Msa1012090-mRNA-1:exon:4286;Parent=Msa1012090-mRNA-1 |
| chr7_1 | exon | 17160984 | 17161055 | 17160984 | ID=Msa1012090-mRNA-1:exon:4287;Parent=Msa1012090-mRNA-1 |
| chr7_1 | exon | 17161195 | 17161317 | 17161195 | ID=Msa1012090-mRNA-1:exon:4288;Parent=Msa1012090-mRNA-1 |
| chr7_1 | exon | 17161449 | 17161523 | 17161449 | ID=Msa1012090-mRNA-1:exon:4289;Parent=Msa1012090-mRNA-1 |
| chr7_1 | exon | 17161628 | 17161693 | 17161628 | ID=Msa1012090-mRNA-1:exon:4290;Parent=Msa1012090-mRNA-1 |
| chr7_1 | exon | 17162020 | 17162115 | 17162020 | ID=Msa1012090-mRNA-1:exon:4291;Parent=Msa1012090-mRNA-1 |
| chr7_1 | exon | 17162313 | 17162429 | 17162313 | ID=Msa1012090-mRNA-1:exon:4292;Parent=Msa1012090-mRNA-1 |
| chr7_1 | exon | 17163289 | 17163369 | 17163289 | ID=Msa1012090-mRNA-1:exon:4293;Parent=Msa1012090-mRNA-1 |
| chr7_1 | exon | 17163670 | 17164062 | 17163670 | ID=Msa1012090-mRNA-1:exon:4294;Parent=Msa1012090-mRNA-1 |
| chr7_1 | exon | 17164136 | 17164674 | 17164136 | ID=Msa1012090-mRNA-1:exon:4295;Parent=Msa1012090-mRNA-1 |
| chr7_1 | CDS | 17159272 | 17159291 | 17159272 | ID=Msa1012090-mRNA-1:cds;Parent=Msa1012090-mRNA-1 |
| chr7_1 | CDS | 17159688 | 17159767 | 17159688 | ID=Msa1012090-mRNA-1:cds;Parent=Msa1012090-mRNA-1 |
| chr7_1 | CDS | 17160485 | 17160600 | 17160485 | ID=Msa1012090-mRNA-1:cds;Parent=Msa1012090-mRNA-1 |
| chr7_1 | CDS | 17160763 | 17160834 | 17160763 | ID=Msa1012090-mRNA-1:cds;Parent=Msa1012090-mRNA-1 |
| chr7_1 | CDS | 17160984 | 17161055 | 17160984 | ID=Msa1012090-mRNA-1:cds;Parent=Msa1012090-mRNA-1 |
| chr7_1 | CDS | 17161195 | 17161317 | 17161195 | ID=Msa1012090-mRNA-1:cds;Parent=Msa1012090-mRNA-1 |
| chr7_1 | CDS | 17161449 | 17161523 | 17161449 | ID=Msa1012090-mRNA-1:cds;Parent=Msa1012090-mRNA-1 |
| chr7_1 | CDS | 17161628 | 17161693 | 17161628 | ID=Msa1012090-mRNA-1:cds;Parent=Msa1012090-mRNA-1 |
| chr7_1 | CDS | 17162020 | 17162115 | 17162020 | ID=Msa1012090-mRNA-1:cds;Parent=Msa1012090-mRNA-1 |
| chr7_1 | CDS | 17162313 | 17162429 | 17162313 | ID=Msa1012090-mRNA-1:cds;Parent=Msa1012090-mRNA-1 |
| chr7_1 | CDS | 17163289 | 17163369 | 17163289 | ID=Msa1012090-mRNA-1:cds;Parent=Msa1012090-mRNA-1 |
| chr7_1 | CDS | 17163670 | 17163744 | 17163670 | ID=Msa1012090-mRNA-1:cds;Parent=Msa1012090-mRNA-1 |
| chr7_1 | three_prime_UTR | 17163745 | 17164062 | 17163745 | ID=Msa1012090-mRNA-1:three_prime_utr;Parent=Msa1012090-mRNA-1 |
| chr7_1 | three_prime_UTR | 17164136 | 17164674 | 17164136 | ID=Msa1012090-mRNA-1:three_prime_utr;Parent=Msa1012090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
