AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0319720


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0319720 MtrunA17_Chr2g0294391 96.244 426 15 1 1 426 1 425 0.0 848
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 82 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATCCTGAGCATCTCTTAT+TGG 0.255116 2_4:-19607319 Msa0319720:CDS
GCAGGCTTTCTTCAACTTGC+TGG 0.275625 2_4:-19607810 Msa0319720:intron
AATATTACCTTGCACTTGTA+TGG 0.276099 2_4:+19608849 None:intergenic
AGCATCTCTTATTGGCTCTA+AGG 0.283609 2_4:-19607311 Msa0319720:CDS
CTTCAGTACTCTTGGTGTTT+CGG 0.323610 2_4:+19609239 None:intergenic
GAAGAACTATGGCGTGCTTT+AGG 0.333345 2_4:-19608650 Msa0319720:CDS
AAGTTGAAGTTTCTAAGATT+TGG 0.338252 2_4:+19608399 None:intergenic
ATCTTAGAAACTTCAACTTA+TGG 0.342098 2_4:-19608395 Msa0319720:CDS
ATTGTTGAATCTCCAACATT+AGG 0.343139 2_4:+19608456 None:intergenic
AGTTTGGTTTACACTCTTGC+TGG 0.350609 2_4:-19610539 Msa0319720:CDS
CGTCCGATGAGTGGAGATAT+TGG 0.364584 2_4:-19608250 Msa0319720:CDS
AGTCTCTCCAGAGAGGTAAC+TGG 0.364654 2_4:-19610616 Msa0319720:CDS
AATAGCCTTTGCTGCTCAAT+TGG 0.377573 2_4:-19608206 Msa0319720:CDS
ATAGATTATAGACATTTAAC+AGG 0.378788 2_4:+19607267 None:intergenic
TGCTAATGCAATCTCATTCC+AGG 0.384899 2_4:-19609292 Msa0319720:CDS
GGGAAGCTCTTGCTTTGGTT+GGG 0.389043 2_4:-19607290 Msa0319720:CDS
AGGGAAGCTCTTGCTTTGGT+TGG 0.392507 2_4:-19607291 Msa0319720:CDS
GGCATACATGTTCAGATTGT+TGG 0.392739 2_4:-19607396 Msa0319720:intron
TCATCACCCAAGGTCTTCTA+AGG 0.393034 2_4:+19609708 None:intergenic
GTAAACTGTTTGAAGAACTA+TGG 0.401548 2_4:-19608661 Msa0319720:CDS
TCTAAGGGAAGCTCTTGCTT+TGG 0.410450 2_4:-19607295 Msa0319720:CDS
TGAAGCAGCTCCACCATGTT+GGG 0.410865 2_4:+19607350 None:intergenic
TTGTTTGTTTCCAGAATACT+TGG 0.412856 2_4:-19607626 Msa0319720:intron
GTCCGATGAGTGGAGATATT+GGG 0.417237 2_4:-19608249 Msa0319720:CDS
GTTAAAACCTTCAGTACTCT+TGG 0.418097 2_4:+19609231 None:intergenic
TAGCATCAACATCATTTCTC+TGG 0.438762 2_4:+19608879 None:intergenic
TATTGGGAGAGGAGCAACTA+AGG 0.440476 2_4:-19608233 Msa0319720:CDS
CAGGTTAGTTTACCTAATGT+TGG 0.448264 2_4:-19608468 Msa0319720:CDS
TGGAATGAGATTGCATTAGC+AGG 0.453245 2_4:+19609294 None:intergenic
TTTGTGAAGTAGATTTCTCC+TGG 0.459138 2_4:+19609274 None:intergenic
CTTGATTGAAACATTGATGT+TGG 0.463286 2_4:-19607225 Msa0319720:three_prime_UTR
GGCTTTCTTCAACTTGCTGG+TGG 0.463509 2_4:-19607807 Msa0319720:CDS
GTGCTTAATTCCAGCAAAAG+TGG 0.464416 2_4:-19610732 Msa0319720:intron
TGATATCAGAAATCTCAGTT+TGG 0.470509 2_4:-19610555 Msa0319720:CDS
GATCTTCACTTTCGCAAAGC+CGG 0.473240 2_4:-19609665 Msa0319720:intron
TTAATTAGCGGCATAGCCTA+TGG 0.486305 2_4:-19607559 Msa0319720:CDS
AGAGCCAATAAGAGATGCTC+AGG 0.491628 2_4:+19607315 None:intergenic
ACTAATGCTCACACAATTGA+AGG 0.491760 2_4:-19607783 Msa0319720:CDS
TGTTGAAACAGAGATATTTG+TGG 0.497398 2_4:+19610839 None:intergenic
CCATCACACACTTTAATTAG+CGG 0.502448 2_4:-19607571 Msa0319720:CDS
GCTTGACCCAGTTACCTCTC+TGG 0.509733 2_4:+19610609 None:intergenic
GAAGAATCTCATCAACACTT+TGG 0.511521 2_4:-19610681 Msa0319720:CDS
ATGCTGCCTTAGAAGACCTT+GGG 0.513130 2_4:-19609714 Msa0319720:CDS
GTCATAACGGAGCGCTGCTA+TGG 0.513932 2_4:-19609099 Msa0319720:CDS
CAGTCCGATGGACAGTCCTC+GGG 0.520332 2_4:+19609342 None:intergenic
TAGAAACTTCAACTTATGGC+AGG 0.529444 2_4:-19608391 Msa0319720:intron
ACAGTCCGATGGACAGTCCT+CGG 0.535368 2_4:+19609341 None:intergenic
TATGCTGCCTTAGAAGACCT+TGG 0.541613 2_4:-19609715 Msa0319720:CDS
TTTAGCCAATTGAGCAGCAA+AGG 0.545220 2_4:+19608201 None:intergenic
AAAGCAAAAGATAGACCTCC+TGG 0.545248 2_4:-19608181 Msa0319720:intron
ACGGAGCGCTGCTATGGCTG+TGG 0.547245 2_4:-19609093 Msa0319720:CDS
GTCTCTCCAGAGAGGTAACT+GGG 0.550235 2_4:-19610615 Msa0319720:CDS
TTAGACGGCCGTCCGATGAG+TGG 0.552985 2_4:-19608259 Msa0319720:CDS
GCATCTCTTATTGGCTCTAA+GGG 0.555107 2_4:-19607310 Msa0319720:CDS
TTGAAGCAGCTCCACCATGT+TGG 0.555464 2_4:+19607349 None:intergenic
CTTTCGCGCGTAGCCACCAT+AGG 0.556649 2_4:+19607543 None:intergenic
TCCACCATGTTGGGATTGCA+TGG 0.562511 2_4:+19607359 None:intergenic
AACTGGGTCAAGCTCATATG+TGG 0.567162 2_4:-19610599 Msa0319720:CDS
CATGCAGGACGGAGTCATAA+CGG 0.567434 2_4:-19609112 Msa0319720:intron
GTTGTGAGTGCTGTGAATGA+AGG 0.582088 2_4:-19609761 Msa0319720:CDS
ATGAGTGGAGATATTGGGAG+AGG 0.585956 2_4:-19608244 Msa0319720:CDS
CCGCTAATTAAAGTGTGTGA+TGG 0.599979 2_4:+19607571 None:intergenic
CTATGGTGGCTACGCGCGAA+AGG 0.602405 2_4:-19607542 Msa0319720:intron
CGAAACACCAAGAGTACTGA+AGG 0.602463 2_4:-19609238 Msa0319720:intron
TGATCCCGAGGACTGTCCAT+CGG 0.604988 2_4:-19609346 Msa0319720:CDS
GAAGTGTGTTGTTCATCAGA+AGG 0.605834 2_4:-19610705 Msa0319720:CDS
CTTAACAGAATTTGATCCCG+AGG 0.610386 2_4:-19609358 Msa0319720:intron
GGAATGAGATTGCATTAGCA+GGG 0.613865 2_4:+19609295 None:intergenic
CTCCCAATATCTCCACTCAT+CGG 0.614980 2_4:+19608247 None:intergenic
CAAGGGCGTGAACAGTCCGA+TGG 0.615557 2_4:+19609330 None:intergenic
TTGGTTTACACTCTTGCTGG+AGG 0.616962 2_4:-19610536 Msa0319720:intron
GATGATGATGATGAAATGGA+AGG 0.624179 2_4:+19610653 None:intergenic
TAGAGATCCATACAAGTGCA+AGG 0.633756 2_4:-19608856 Msa0319720:intron
ATGTATAAACTAAAGTTAGA+CGG 0.636370 2_4:-19608274 Msa0319720:intron
AGATCCATGCAATCCCAACA+TGG 0.647702 2_4:-19607363 Msa0319720:CDS
CCTCTCTGGAGAGACTCAAG+TGG 0.651836 2_4:+19610623 None:intergenic
ATTAGCGGCATAGCCTATGG+TGG 0.654448 2_4:-19607556 Msa0319720:CDS
CAATATCTCCACTCATCGGA+CGG 0.667049 2_4:+19608251 None:intergenic
TTGACACTGATCATCACCCA+AGG 0.681955 2_4:+19609698 None:intergenic
CCACTTGAGTCTCTCCAGAG+AGG 0.698123 2_4:-19610623 Msa0319720:CDS
TCCATGCAATCCCAACATGG+TGG 0.701127 2_4:-19607360 Msa0319720:CDS
TCTGTTTCAACAAAACACAA+CGG 0.706458 2_4:-19610828 Msa0319720:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAATTCACTAATCTTTAT+AGG - chr2_4:19607879-19607898 Msa0319720:intron 15.0%
!!! ATTTTCACATTTAAAACTTT+TGG - chr2_4:19608472-19608491 Msa0319720:intron 15.0%
!! TAAGAATTTATAATATCAGA+TGG + chr2_4:19609006-19609025 None:intergenic 15.0%
!! GATTACACAAAAATAATTAA+GGG + chr2_4:19609034-19609053 None:intergenic 15.0%
!! AGATTACACAAAAATAATTA+AGG + chr2_4:19609035-19609054 None:intergenic 15.0%
!! ATTTATGTAATGATATGTGT+CGG + chr2_4:19607661-19607680 None:intergenic 20.0%
!! AATAAACTAATAACAGCTTA+TGG + chr2_4:19607825-19607844 None:intergenic 20.0%
!! TTTATTTCACTAATCTTTCT+AGG - chr2_4:19607839-19607858 Msa0319720:intron 20.0%
!! TAAAACTTGTAATGTTGAAT+TGG - chr2_4:19608879-19608898 Msa0319720:CDS 20.0%
!!! ATCCTACTTATTTTATCATA+GGG + chr2_4:19608972-19608991 None:intergenic 20.0%
!!! TATCCTACTTATTTTATCAT+AGG + chr2_4:19608973-19608992 None:intergenic 20.0%
!!! ATATACTTTTCATATTGATC+AGG - chr2_4:19609073-19609092 Msa0319720:CDS 20.0%
!!! ATCACTTTTCAATAAATACT+CGG - chr2_4:19609481-19609500 Msa0319720:intron 20.0%
!! ATTTACTATTAAAATGATCC+AGG - chr2_4:19609533-19609552 Msa0319720:intron 20.0%
!! AATAAACATGGAATAGAATT+TGG + chr2_4:19609706-19609725 None:intergenic 20.0%
!! ATGTATAAACTAAAGTTAGA+CGG - chr2_4:19609746-19609765 Msa0319720:CDS 20.0%
!! TGATAGATATAAATCCTAAA+GGG + chr2_4:19610158-19610177 None:intergenic 20.0%
!! ATGATAGATATAAATCCTAA+AGG + chr2_4:19610159-19610178 None:intergenic 20.0%
!! ATAGATTATAGACATTTAAC+AGG + chr2_4:19610756-19610775 None:intergenic 20.0%
! CTAACTTATTTGACCATATA+AGG - chr2_4:19607682-19607701 Msa0319720:intron 25.0%
! AATAGAAGTAGCTTATATGT+AGG - chr2_4:19608114-19608133 Msa0319720:intron 25.0%
! TTAAATAAGAACTGTCTTAC+CGG + chr2_4:19608377-19608396 None:intergenic 25.0%
! AACATACTTCAGAAATCTTA+TGG - chr2_4:19608423-19608442 Msa0319720:CDS 25.0%
!!! TCACATTTAAAACTTTTGGA+AGG - chr2_4:19608476-19608495 Msa0319720:intron 25.0%
! ATTTGCAATGAATCTTCATT+TGG - chr2_4:19608506-19608525 Msa0319720:intron 25.0%
!!! TCCTACTTATTTTATCATAG+GGG + chr2_4:19608971-19608990 None:intergenic 25.0%
! GAAAAATCAATCAAAGATCA+TGG + chr2_4:19609297-19609316 None:intergenic 25.0%
!!! AAGTTGAAGTTTCTAAGATT+TGG + chr2_4:19609624-19609643 None:intergenic 25.0%
! ATCTTAGAAACTTCAACTTA+TGG - chr2_4:19609625-19609644 Msa0319720:intron 25.0%
!!! TGGGTTTGTTAAAATAAACA+TGG + chr2_4:19609718-19609737 None:intergenic 25.0%
!! GTCTAACTTTAGTTTATACA+TGG + chr2_4:19609747-19609766 None:intergenic 25.0%
! ATTGAAGGATTGAAAAAAGA+AGG - chr2_4:19610252-19610271 Msa0319720:intron 25.0%
!! AATTTAGAACAGAAACAGAA+TGG + chr2_4:19610541-19610560 None:intergenic 25.0%
!!! TTTCTGTTCTAAATTTTCTG+TGG - chr2_4:19610546-19610565 Msa0319720:CDS 25.0%
TGTTGAAACAGAGATATTTG+TGG + chr2_4:19607184-19607203 None:intergenic 30.0%
TCTGTTTCAACAAAACACAA+CGG - chr2_4:19607192-19607211 Msa0319720:three_prime_UTR 30.0%
! TGATGATGATGATGATGAAA+TGG + chr2_4:19607374-19607393 None:intergenic 30.0%
TGATATCAGAAATCTCAGTT+TGG - chr2_4:19607465-19607484 Msa0319720:intron 30.0%
GTATTAAGAGCAGAAAATAC+AGG - chr2_4:19607553-19607572 Msa0319720:CDS 30.0%
ACCATATAAGGAACACATTA+AGG - chr2_4:19607694-19607713 Msa0319720:intron 30.0%
TCCTTAATGTGTTCCTTATA+TGG + chr2_4:19607698-19607717 None:intergenic 30.0%
TAAGGAACACATTAAGGAAT+TGG - chr2_4:19607700-19607719 Msa0319720:intron 30.0%
! AATAAGTTGAAAACAGCGTA+TGG + chr2_4:19607979-19607998 None:intergenic 30.0%
GTATGTTGATGTGTAATGTA+CGG + chr2_4:19608410-19608429 None:intergenic 30.0%
TTGAATTGGATTTAACATGC+AGG - chr2_4:19608893-19608912 Msa0319720:CDS 30.0%
AATATTACCTTGCACTTGTA+TGG + chr2_4:19609174-19609193 None:intergenic 30.0%
CAGCTATATTCTAGTATTTC+AGG + chr2_4:19609203-19609222 None:intergenic 30.0%
GTAAACTGTTTGAAGAACTA+TGG - chr2_4:19609359-19609378 Msa0319720:intron 30.0%
CAAATATTAGAAGAGGTTGA+AGG + chr2_4:19609437-19609456 None:intergenic 30.0%
TCAACCTCTTCTAATATTTG+AGG - chr2_4:19609437-19609456 Msa0319720:intron 30.0%
CAACCTCTTCTAATATTTGA+GGG - chr2_4:19609438-19609457 Msa0319720:intron 30.0%
AACCTCTTCTAATATTTGAG+GGG - chr2_4:19609439-19609458 Msa0319720:intron 30.0%
ATTGTTGAATCTCCAACATT+AGG + chr2_4:19609567-19609586 None:intergenic 30.0%
AGTTTATACATGGCAAAGAT+GGG + chr2_4:19609737-19609756 None:intergenic 30.0%
TAGTTTATACATGGCAAAGA+TGG + chr2_4:19609738-19609757 None:intergenic 30.0%
TAAAATCTTATCCTGAGTTG+AGG + chr2_4:19609992-19610011 None:intergenic 30.0%
!! GGATAAGATTTTAACGAGAT+AGG - chr2_4:19609999-19610018 Msa0319720:intron 30.0%
GACATGATATGAATCTATGA+TGG - chr2_4:19610086-19610105 Msa0319720:intron 30.0%
AATGTTTCATTCCCTTAACA+TGG - chr2_4:19610188-19610207 Msa0319720:intron 30.0%
TTGTTTGTTTCCAGAATACT+TGG - chr2_4:19610394-19610413 Msa0319720:intron 30.0%
! TTTTCATGATCCAAGTATTC+TGG + chr2_4:19610407-19610426 None:intergenic 30.0%
CTTGATTGAAACATTGATGT+TGG - chr2_4:19610795-19610814 Msa0319720:intron 30.0%
GAAGAATCTCATCAACACTT+TGG - chr2_4:19607339-19607358 Msa0319720:CDS 35.0%
! GATGATGATGATGAAATGGA+AGG + chr2_4:19607370-19607389 None:intergenic 35.0%
GCTAACCTATGTATGTAACA+CGG - chr2_4:19607606-19607625 Msa0319720:CDS 35.0%
CACATTAAGGAATTGGACTT+TGG - chr2_4:19607707-19607726 Msa0319720:intron 35.0%
!!! TACAGACTTTTGAGACTCTT+TGG - chr2_4:19607923-19607942 Msa0319720:intron 35.0%
!!! ACAGACTTTTGAGACTCTTT+GGG - chr2_4:19607924-19607943 Msa0319720:intron 35.0%
CATCCATGAACTAGATTATG+TGG - chr2_4:19608194-19608213 Msa0319720:CDS 35.0%
! CAACCACATAATCTAGTTCA+TGG + chr2_4:19608200-19608219 None:intergenic 35.0%
CATGAACTAGATTATGTGGT+TGG - chr2_4:19608198-19608217 Msa0319720:CDS 35.0%
ACTTCAGAAATCTTATGGCA+TGG - chr2_4:19608428-19608447 Msa0319720:CDS 35.0%
! GACACTATGTTTTGCTTACA+TGG + chr2_4:19608543-19608562 None:intergenic 35.0%
GGGATCAAATTCTGTTAAGA+AGG + chr2_4:19608661-19608680 None:intergenic 35.0%
TTTGTGAAGTAGATTTCTCC+TGG + chr2_4:19608749-19608768 None:intergenic 35.0%
GTTAAAACCTTCAGTACTCT+TGG + chr2_4:19608792-19608811 None:intergenic 35.0%
ATTGGATTTAACATGCAGGA+CGG - chr2_4:19608897-19608916 Msa0319720:CDS 35.0%
! ATTTTATCATAGGGGCAAAC+TGG + chr2_4:19608963-19608982 None:intergenic 35.0%
GCCCCTATGATAAAATAAGT+AGG - chr2_4:19608967-19608986 Msa0319720:intron 35.0%
! CTTTTCATATTGATCAGGAG+AGG - chr2_4:19609078-19609097 Msa0319720:CDS 35.0%
TAGCATCAACATCATTTCTC+TGG + chr2_4:19609144-19609163 None:intergenic 35.0%
AACCCCTCAAATATTAGAAG+AGG + chr2_4:19609444-19609463 None:intergenic 35.0%
TCAATAAATACTCGGCTTCA+AGG - chr2_4:19609489-19609508 Msa0319720:intron 35.0%
CAACATTAGGTAAACTAACC+TGG + chr2_4:19609554-19609573 None:intergenic 35.0%
!! CAGGTTAGTTTACCTAATGT+TGG - chr2_4:19609552-19609571 Msa0319720:intron 35.0%
TAGAAACTTCAACTTATGGC+AGG - chr2_4:19609629-19609648 Msa0319720:intron 35.0%
TTGAATTGTGAATACGAACC+AGG + chr2_4:19609860-19609879 None:intergenic 35.0%
TCTCTATCATGACCATCAAA+CGG + chr2_4:19609913-19609932 None:intergenic 35.0%
! TTTGATGGTCATGATAGAGA+CGG - chr2_4:19609913-19609932 Msa0319720:intron 35.0%
AAGATCTTATCCTGTCATGT+TGG - chr2_4:19609954-19609973 Msa0319720:intron 35.0%
!! AAGATTTTAACGAGATAGGC+AGG - chr2_4:19610003-19610022 Msa0319720:intron 35.0%
GTCAAGTTATCGTATCATGA+TGG - chr2_4:19610043-19610062 Msa0319720:intron 35.0%
ACTAATGCTCACACAATTGA+AGG - chr2_4:19610237-19610256 Msa0319720:intron 35.0%
CCATCACACACTTTAATTAG+CGG - chr2_4:19610449-19610468 Msa0319720:intron 35.0%
GTCACATTATGTGATGACAT+TGG - chr2_4:19610603-19610622 Msa0319720:CDS 35.0%
GTGCTTAATTCCAGCAAAAG+TGG - chr2_4:19607288-19607307 Msa0319720:CDS 40.0%
!! CACTTCTTATCCACTTTTGC+TGG + chr2_4:19607301-19607320 None:intergenic 40.0%
! GAAGTGTGTTGTTCATCAGA+AGG - chr2_4:19607315-19607334 Msa0319720:CDS 40.0%
! CATATGTGGTGCAAGTTTTG+AGG - chr2_4:19607435-19607454 Msa0319720:intron 40.0%
! AGTTTGGTTTACACTCTTGC+TGG - chr2_4:19607481-19607500 Msa0319720:intron 40.0%
GCAGAAAATACAGGCATGAA+AGG - chr2_4:19607562-19607581 Msa0319720:CDS 40.0%
!!! CAGACTTTTGAGACTCTTTG+GGG - chr2_4:19607925-19607944 Msa0319720:intron 40.0%
!!! AGACTTTTGAGACTCTTTGG+GGG - chr2_4:19607926-19607945 Msa0319720:intron 40.0%
! ATCTAGTTCATGGATGTGTC+TGG + chr2_4:19608190-19608209 None:intergenic 40.0%
CTTAACAGAATTTGATCCCG+AGG - chr2_4:19608662-19608681 Msa0319720:CDS 40.0%
GGAATGAGATTGCATTAGCA+GGG + chr2_4:19608728-19608747 None:intergenic 40.0%
TGGAATGAGATTGCATTAGC+AGG + chr2_4:19608729-19608748 None:intergenic 40.0%
TGCTAATGCAATCTCATTCC+AGG - chr2_4:19608728-19608747 Msa0319720:intron 40.0%
!! CTTCAGTACTCTTGGTGTTT+CGG + chr2_4:19608784-19608803 None:intergenic 40.0%
TAGAGATCCATACAAGTGCA+AGG - chr2_4:19609164-19609183 Msa0319720:intron 40.0%
! GATGTATCGACACAAGGAAA+TGG + chr2_4:19609325-19609344 None:intergenic 40.0%
! TAGAAGGATGTATCGACACA+AGG + chr2_4:19609331-19609350 None:intergenic 40.0%
! GTGTCGATACATCCTTCTAT+AGG - chr2_4:19609332-19609351 Msa0319720:CDS 40.0%
CAGTTTACTCTGCCTATAGA+AGG + chr2_4:19609347-19609366 None:intergenic 40.0%
AATAGCCTTTGCTGCTCAAT+TGG - chr2_4:19609814-19609833 Msa0319720:intron 40.0%
TTTAGCCAATTGAGCAGCAA+AGG + chr2_4:19609822-19609841 None:intergenic 40.0%
AAAGCAAAAGATAGACCTCC+TGG - chr2_4:19609839-19609858 Msa0319720:intron 40.0%
AATTGTGAATACGAACCAGG+AGG + chr2_4:19609857-19609876 None:intergenic 40.0%
CTCTATCATGACCATCAAAC+GGG + chr2_4:19609912-19609931 None:intergenic 40.0%
TGATAGAGACGGATAGGATA+TGG - chr2_4:19609924-19609943 Msa0319720:intron 40.0%
GATAGAGACGGATAGGATAT+GGG - chr2_4:19609925-19609944 Msa0319720:intron 40.0%
GAGTTAGAAACCAACATGAC+AGG + chr2_4:19609967-19609986 None:intergenic 40.0%
GCAGGATATGATATGTGACA+TGG - chr2_4:19610021-19610040 Msa0319720:intron 40.0%
ATGTCTCAATCCAGTGTCTA+AGG + chr2_4:19610071-19610090 None:intergenic 40.0%
TTTCATTCCCTTAACATGGC+AGG - chr2_4:19610192-19610211 Msa0319720:intron 40.0%
AAGAAAGCCTGCCATGTTAA+GGG + chr2_4:19610202-19610221 None:intergenic 40.0%
CCGCTAATTAAAGTGTGTGA+TGG + chr2_4:19610452-19610471 None:intergenic 40.0%
TTAATTAGCGGCATAGCCTA+TGG - chr2_4:19610461-19610480 Msa0319720:intron 40.0%
GGCATACATGTTCAGATTGT+TGG - chr2_4:19610624-19610643 Msa0319720:CDS 40.0%
TCATCCTGAGCATCTCTTAT+TGG - chr2_4:19610701-19610720 Msa0319720:CDS 40.0%
!! AGCATCTCTTATTGGCTCTA+AGG - chr2_4:19610709-19610728 Msa0319720:CDS 40.0%
!! GCATCTCTTATTGGCTCTAA+GGG - chr2_4:19610710-19610729 Msa0319720:CDS 40.0%
AACTGGGTCAAGCTCATATG+TGG - chr2_4:19607421-19607440 Msa0319720:intron 45.0%
TTGGTTTACACTCTTGCTGG+AGG - chr2_4:19607484-19607503 Msa0319720:intron 45.0%
! GTTGTGAGTGCTGTGAATGA+AGG - chr2_4:19608259-19608278 Msa0319720:CDS 45.0%
TATGCTGCCTTAGAAGACCT+TGG - chr2_4:19608305-19608324 Msa0319720:intron 45.0%
ATGCTGCCTTAGAAGACCTT+GGG - chr2_4:19608306-19608325 Msa0319720:intron 45.0%
TCATCACCCAAGGTCTTCTA+AGG + chr2_4:19608315-19608334 None:intergenic 45.0%
TTGACACTGATCATCACCCA+AGG + chr2_4:19608325-19608344 None:intergenic 45.0%
GATCTTCACTTTCGCAAAGC+CGG - chr2_4:19608355-19608374 Msa0319720:intron 45.0%
! CAGGGCAAACATTTTCGCAA+GGG + chr2_4:19608710-19608729 None:intergenic 45.0%
!! CGAAACACCAAGAGTACTGA+AGG - chr2_4:19608782-19608801 Msa0319720:intron 45.0%
GAAGAACTATGGCGTGCTTT+AGG - chr2_4:19609370-19609389 Msa0319720:intron 45.0%
ACTTCAACTTATGGCAGGTG+TGG - chr2_4:19609634-19609653 Msa0319720:intron 45.0%
CAATATCTCCACTCATCGGA+CGG + chr2_4:19609772-19609791 None:intergenic 45.0%
GTCCGATGAGTGGAGATATT+GGG - chr2_4:19609771-19609790 Msa0319720:CDS 45.0%
CTCCCAATATCTCCACTCAT+CGG + chr2_4:19609776-19609795 None:intergenic 45.0%
ATGAGTGGAGATATTGGGAG+AGG - chr2_4:19609776-19609795 Msa0319720:CDS 45.0%
TATTGGGAGAGGAGCAACTA+AGG - chr2_4:19609787-19609806 Msa0319720:CDS 45.0%
TCTTCACAAGACCCGTTTGA+TGG - chr2_4:19609898-19609917 Msa0319720:intron 45.0%
TGGTCATGATAGAGACGGAT+AGG - chr2_4:19609918-19609937 Msa0319720:intron 45.0%
TTCTAACTCAGCCTCAACTC+AGG - chr2_4:19609978-19609997 Msa0319720:intron 45.0%
CAGGATGAGAGAGACATGAT+AGG + chr2_4:19610123-19610142 None:intergenic 45.0%
CTATCATGTCTCTCTCATCC+TGG - chr2_4:19610121-19610140 Msa0319720:intron 45.0%
AATCCTAAAGGGCCGATCAA+TGG + chr2_4:19610147-19610166 None:intergenic 45.0%
GAAGAAAGCCTGCCATGTTA+AGG + chr2_4:19610203-19610222 None:intergenic 45.0%
AGATCCATGCAATCCCAACA+TGG - chr2_4:19610657-19610676 Msa0319720:CDS 45.0%
AGAGCCAATAAGAGATGCTC+AGG + chr2_4:19610708-19610727 None:intergenic 45.0%
TCTAAGGGAAGCTCTTGCTT+TGG - chr2_4:19610725-19610744 Msa0319720:intron 45.0%
!! ATTATAAGAATTTATTTATT+TGG - chr2_4:19607528-19607547 Msa0319720:intron 5.0%
!! TTATAAGAATTTATTTATTT+GGG - chr2_4:19607529-19607548 Msa0319720:intron 5.0%
AGTCTCTCCAGAGAGGTAAC+TGG - chr2_4:19607404-19607423 Msa0319720:intron 50.0%
GTCTCTCCAGAGAGGTAACT+GGG - chr2_4:19607405-19607424 Msa0319720:intron 50.0%
CGCGTCCGTGTTACATACAT+AGG + chr2_4:19607614-19607633 None:intergenic 50.0%
! GCAGGGCAAACATTTTCGCA+AGG + chr2_4:19608711-19608730 None:intergenic 50.0%
CATGCAGGACGGAGTCATAA+CGG - chr2_4:19608908-19608927 Msa0319720:CDS 50.0%
TTGAAGCTAGTCGCCGTAAG+TGG - chr2_4:19609409-19609428 Msa0319720:intron 50.0%
!! GAGGTTGAAGGCACCACTTA+CGG + chr2_4:19609425-19609444 None:intergenic 50.0%
CGTCCGATGAGTGGAGATAT+TGG - chr2_4:19609770-19609789 Msa0319720:CDS 50.0%
CATGATGGCTCCTTAGACAC+TGG - chr2_4:19610058-19610077 Msa0319720:intron 50.0%
CTCTCATCCTGGCCATTGAT+CGG - chr2_4:19610132-19610151 Msa0319720:intron 50.0%
GCAGGCTTTCTTCAACTTGC+TGG - chr2_4:19610210-19610229 Msa0319720:intron 50.0%
!! GGCTTTCTTCAACTTGCTGG+TGG - chr2_4:19610213-19610232 Msa0319720:intron 50.0%
ATTAGCGGCATAGCCTATGG+TGG - chr2_4:19610464-19610483 Msa0319720:intron 50.0%
TCCATGCAATCCCAACATGG+TGG - chr2_4:19610660-19610679 Msa0319720:CDS 50.0%
TCCACCATGTTGGGATTGCA+TGG + chr2_4:19610664-19610683 None:intergenic 50.0%
TGAAGCAGCTCCACCATGTT+GGG + chr2_4:19610673-19610692 None:intergenic 50.0%
TTGAAGCAGCTCCACCATGT+TGG + chr2_4:19610674-19610693 None:intergenic 50.0%
AGGGAAGCTCTTGCTTTGGT+TGG - chr2_4:19610729-19610748 Msa0319720:intron 50.0%
GGGAAGCTCTTGCTTTGGTT+GGG - chr2_4:19610730-19610749 Msa0319720:intron 50.0%
! CCTCTCTGGAGAGACTCAAG+TGG + chr2_4:19607400-19607419 None:intergenic 55.0%
CCACTTGAGTCTCTCCAGAG+AGG - chr2_4:19607397-19607416 Msa0319720:intron 55.0%
GCTTGACCCAGTTACCTCTC+TGG + chr2_4:19607414-19607433 None:intergenic 55.0%
TGATCCCGAGGACTGTCCAT+CGG - chr2_4:19608674-19608693 Msa0319720:intron 55.0%
ACAGTCCGATGGACAGTCCT+CGG + chr2_4:19608682-19608701 None:intergenic 55.0%
!! GTCATAACGGAGCGCTGCTA+TGG - chr2_4:19608921-19608940 Msa0319720:CDS 55.0%
TAAAGGGCCGATCAATGGCC+AGG + chr2_4:19610142-19610161 None:intergenic 55.0%
TGGCCATTGATCGGCCCTTT+AGG - chr2_4:19610141-19610160 Msa0319720:intron 55.0%
CAGTCCGATGGACAGTCCTC+GGG + chr2_4:19608681-19608700 None:intergenic 60.0%
! CAAGGGCGTGAACAGTCCGA+TGG + chr2_4:19608693-19608712 None:intergenic 60.0%
TTAGACGGCCGTCCGATGAG+TGG - chr2_4:19609761-19609780 Msa0319720:CDS 60.0%
CTTTCGCGCGTAGCCACCAT+AGG + chr2_4:19610480-19610499 None:intergenic 60.0%
CTATGGTGGCTACGCGCGAA+AGG - chr2_4:19610478-19610497 Msa0319720:intron 60.0%
!! ACGGAGCGCTGCTATGGCTG+TGG - chr2_4:19608927-19608946 Msa0319720:CDS 65.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 19607156 19610886 19607156 ID=Msa0319720;Name=Msa0319720
chr2_4 mRNA 19607156 19610886 19607156 ID=Msa0319720-mRNA-1;Parent=Msa0319720;Name=Msa0319720-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|1|0.91|1|1|1|12|116|426
chr2_4 exon 19607156 19607403 19607156 ID=Msa0319720-mRNA-1:exon:7275;Parent=Msa0319720-mRNA-1
chr2_4 exon 19607543 19607634 19607543 ID=Msa0319720-mRNA-1:exon:7274;Parent=Msa0319720-mRNA-1
chr2_4 exon 19607745 19607828 19607745 ID=Msa0319720-mRNA-1:exon:7273;Parent=Msa0319720-mRNA-1
chr2_4 exon 19608182 19608281 19608182 ID=Msa0319720-mRNA-1:exon:7272;Parent=Msa0319720-mRNA-1
chr2_4 exon 19608392 19608487 19608392 ID=Msa0319720-mRNA-1:exon:7271;Parent=Msa0319720-mRNA-1
chr2_4 exon 19608619 19608688 19608619 ID=Msa0319720-mRNA-1:exon:7270;Parent=Msa0319720-mRNA-1
chr2_4 exon 19608857 19608947 19608857 ID=Msa0319720-mRNA-1:exon:7269;Parent=Msa0319720-mRNA-1
chr2_4 exon 19609058 19609127 19609058 ID=Msa0319720-mRNA-1:exon:7268;Parent=Msa0319720-mRNA-1
chr2_4 exon 19609239 19609372 19609239 ID=Msa0319720-mRNA-1:exon:7267;Parent=Msa0319720-mRNA-1
chr2_4 exon 19609666 19609815 19609666 ID=Msa0319720-mRNA-1:exon:7266;Parent=Msa0319720-mRNA-1
chr2_4 exon 19610537 19610740 19610537 ID=Msa0319720-mRNA-1:exon:7265;Parent=Msa0319720-mRNA-1
chr2_4 exon 19610829 19610886 19610829 ID=Msa0319720-mRNA-1:exon:7264;Parent=Msa0319720-mRNA-1
chr2_4 CDS 19610829 19610886 19610829 ID=Msa0319720-mRNA-1:cds;Parent=Msa0319720-mRNA-1
chr2_4 CDS 19610537 19610740 19610537 ID=Msa0319720-mRNA-1:cds;Parent=Msa0319720-mRNA-1
chr2_4 CDS 19609666 19609815 19609666 ID=Msa0319720-mRNA-1:cds;Parent=Msa0319720-mRNA-1
chr2_4 CDS 19609239 19609372 19609239 ID=Msa0319720-mRNA-1:cds;Parent=Msa0319720-mRNA-1
chr2_4 CDS 19609058 19609127 19609058 ID=Msa0319720-mRNA-1:cds;Parent=Msa0319720-mRNA-1
chr2_4 CDS 19608857 19608947 19608857 ID=Msa0319720-mRNA-1:cds;Parent=Msa0319720-mRNA-1
chr2_4 CDS 19608619 19608688 19608619 ID=Msa0319720-mRNA-1:cds;Parent=Msa0319720-mRNA-1
chr2_4 CDS 19608392 19608487 19608392 ID=Msa0319720-mRNA-1:cds;Parent=Msa0319720-mRNA-1
chr2_4 CDS 19608182 19608281 19608182 ID=Msa0319720-mRNA-1:cds;Parent=Msa0319720-mRNA-1
chr2_4 CDS 19607745 19607828 19607745 ID=Msa0319720-mRNA-1:cds;Parent=Msa0319720-mRNA-1
chr2_4 CDS 19607543 19607634 19607543 ID=Msa0319720-mRNA-1:cds;Parent=Msa0319720-mRNA-1
chr2_4 CDS 19607272 19607403 19607272 ID=Msa0319720-mRNA-1:cds;Parent=Msa0319720-mRNA-1
chr2_4 three_prime_UTR 19607156 19607271 19607156 ID=Msa0319720-mRNA-1:three_prime_utr;Parent=Msa0319720-mRNA-1
Gene Sequence

>Msa0319720

ATGGCTAGTCTGAGATTTTTCTGCGCCACAAATATCTCTGTTTCAACAAAACACAACGCAAAAGTGGATAAGAAGTGTGTTGTTCATCAGAAGGTGAAGAATCTCATCAACACTTTGGAGCTTCCTTCCATTTCATCATCATCATCATCAACTCCACTTGAGTCTCTCCAGAGAGGTAACTGGGTCAAGCTCATATGTGGTGCAAGTTTTGAGGATGTTGTTGATATCAGAAATCTCAGTTTGGTTTACACTCTTGCTGGAGTTGACTGCATTGACTGTGCTGCTGATGCATCTGTTGTGAGTGCTGTGAATGAAGGAATTGAAGCTGCAAGAGACATCATATGCTGCCTTAGAAGACCTTGGGTGATGATCAGTGTCAATGATGATAAAGATCTTCACTTTCGCAAAGCCGAATTTGATCCCGAGGACTGTCCATCGGACTGTTCACGCCCTTGCGAAAATGTTTGCCCTGCTAATGCAATCTCATTCCAGGAGAAATCTACTTCACAAACTTCATGCAACACCGAAACACCAAGAGTACTGAAGGACGGAGTCATAACGGAGCGCTGCTATGGCTGTGGTCGCTGTCTTCCAGTTTGCCCCTATGATAAAATAAGAGAGGTAACATATGTAAGAGATGCTGTTACAACTTCTGATCTCATCCAGAGAAATGATGTTGATGCTATAGAGATCCATACAAGTGCAAGGCAGAGTAAACTGTTTGAAGAACTATGGCGTGCTTTAGGAGATTCAGTAGAAAATTTGAAGCTAGTCGCCGTTAGTTTACCTAATGTTGGAGATTCAACAATATCTTCTATGAACAAAATGTTCTCTATTATGAAACCAAATCTTAGAAACTTCAACTTATGGCAGTTAGACGGCCGTCCGATGAGTGGAGATATTGGGAGAGGAGCAACTAAGGAGTCAATAGCCTTTGCTGCTCAATTGGCTAAAGCAAAAGATAGACCTCCTGGCTTTCTTCAACTTGCTGGTGGAACTAATGCTCACACAATTGAAGGATTGAAAAAAGAAGGACTCTTTCAAACAACTAGTTTAAAATACTTGGATCATGAAAATTCAACAATCAGTACATCTAATCCATCACACACTTTAATTAGCGGCATAGCCTATGGTGGCTACGCGCGAAAGATTGTTGGTAGAGTATTGAGATCCATGCAATCCCAACATGGTGGAGCTGCTTCAATTGAAGATCATCCTGAGCATCTCTTATTGGCTCTAAGGGAAGCTCTTGCTTTGGTTGGGCCTGTTAAATGTCTATAA

Protein sequence

>Msa0319720

MASLRFFCATNISVSTKHNAKVDKKCVVHQKVKNLINTLELPSISSSSSSTPLESLQRGNWVKLICGASFEDVVDIRNLSLVYTLAGVDCIDCAADASVVSAVNEGIEAARDIICCLRRPWVMISVNDDKDLHFRKAEFDPEDCPSDCSRPCENVCPANAISFQEKSTSQTSCNTETPRVLKDGVITERCYGCGRCLPVCPYDKIREVTYVRDAVTTSDLIQRNDVDAIEIHTSARQSKLFEELWRALGDSVENLKLVAVSLPNVGDSTISSMNKMFSIMKPNLRNFNLWQLDGRPMSGDIGRGATKESIAFAAQLAKAKDRPPGFLQLAGGTNAHTIEGLKKEGLFQTTSLKYLDHENSTISTSNPSHTLISGIAYGGYARKIVGRVLRSMQSQHGGAASIEDHPEHLLLALREALALVGPVKCL*