AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1014700


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1014700 MtrunA17_Chr7g0227351 97.638 127 1 2 1 126 1 126 1.94e-86 247
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1014700 AT5G40500.2 61.111 126 37 2 1 126 1 114 2.57e-49 153
Msa1014700 AT5G40500.1 59.375 128 45 2 1 126 1 123 2.95e-49 153

Find 28 sgRNAs with CRISPR-Local

Find 294 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCAAGAGAGTAAAGTAAAA+TGG 0.242720 7_1:+24054826 None:intergenic
GTAATCTCAATAACTTTATA+TGG 0.248815 7_1:+24054555 None:intergenic
CGTATTTCCCTTTGCGAAGC+TGG 0.348117 7_1:+24050222 None:intergenic
TGCAAAAGAAAGACACAAAC+AGG 0.354218 7_1:+24050080 None:intergenic
ACTGATAAGAAAGTGAAAAC+TGG 0.397334 7_1:-24050004 Msa1014700:three_prime_UTR
TGTGCAGACTATGTTGTTTG+AGG 0.408379 7_1:-24054637 Msa1014700:intron
ACAACGAACGCCAAGAGACT+TGG 0.469904 7_1:+24054524 None:intergenic
GGAGAGAGTGTCACAATTGA+AGG 0.473888 7_1:-24050281 Msa1014700:CDS
CTATTTCAGCTGTAACGCTT+CGG 0.481394 7_1:-24050247 Msa1014700:CDS
ACTCCTCCACCCAAGTCTCT+TGG 0.496625 7_1:-24054534 Msa1014700:CDS
TAATCTCAATAACTTTATAT+GGG 0.517341 7_1:+24054556 None:intergenic
TTCGGTACCAGCTTCGCAAA+GGG 0.521585 7_1:-24050229 Msa1014700:CDS
AAGACCTATGTTCATCATGC+TGG 0.531340 7_1:+24054766 None:intergenic
GCAACTACATTCAGAACCAA+TGG 0.536774 7_1:-24050060 Msa1014700:three_prime_UTR
CTTCGGTACCAGCTTCGCAA+AGG 0.571486 7_1:-24050230 Msa1014700:CDS
TCTCAATAACTTTATATGGG+TGG 0.572214 7_1:+24054559 None:intergenic
CAACGAACGCCAAGAGACTT+GGG 0.574152 7_1:+24054525 None:intergenic
AATACGAACAAAGCGAAAAG+AGG 0.584810 7_1:-24050205 Msa1014700:CDS
TCATCCAGCATGATGAACAT+AGG 0.592518 7_1:-24054770 Msa1014700:CDS
AAAGATTTGGAGAATGGCAA+TGG 0.592847 7_1:-24054795 Msa1014700:exon
AGAGAGTAAAGTAAAATGGA+TGG 0.594505 7_1:+24054830 None:intergenic
TTCATCATACAAGAAGAAGA+AGG 0.597762 7_1:-24054741 Msa1014700:intron
AAAATGGATGGCTACCACAA+AGG 0.598070 7_1:+24054842 None:intergenic
ACGCCAAGAGACTTGGGTGG+AGG 0.606321 7_1:+24054531 None:intergenic
TTAAAGCAGAACTTGCAATG+TGG 0.668299 7_1:-24050302 Msa1014700:intron
AGAGACAGAGACAGAGAACG+AGG 0.670989 7_1:-24054597 Msa1014700:CDS
CGAACGCCAAGAGACTTGGG+TGG 0.702523 7_1:+24054528 None:intergenic
GCAAAAGAAAGACACAAACA+GGG 0.712555 7_1:+24050081 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATTAATTAATTAATTAA+AGG + chr7_1:24050175-24050194 None:intergenic 0.0%
!! TAATTAATTAATTAATTAAT+TGG - chr7_1:24050176-24050195 Msa1014700:CDS 0.0%
!!! TTAATTAATTAATTGGTTTT+CGG - chr7_1:24050187-24050206 Msa1014700:CDS 10.0%
!!! CATTTTAAATTATATCAATA+GGG + chr7_1:24051752-24051771 None:intergenic 10.0%
!!! ATAATATCTTTTTTTTTTTG+AGG - chr7_1:24052116-24052135 Msa1014700:intron 10.0%
!!! TAATATCTTTTTTTTTTTGA+GGG - chr7_1:24052117-24052136 Msa1014700:intron 10.0%
!! AAAATTTAATACTATACATA+TGG - chr7_1:24053194-24053213 Msa1014700:intron 10.0%
!! TAATCTCAATAACTTTATAT+GGG + chr7_1:24050321-24050340 None:intergenic 15.0%
!! TTAAATAATTTGATCCAAAT+AGG + chr7_1:24050423-24050442 None:intergenic 15.0%
!! TCAATATATAAGAGAAAATT+GGG + chr7_1:24050718-24050737 None:intergenic 15.0%
!! TTCAATATATAAGAGAAAAT+TGG + chr7_1:24050719-24050738 None:intergenic 15.0%
!! ATGTAGTAATTTATAAGAAT+GGG + chr7_1:24051176-24051195 None:intergenic 15.0%
!! TATGTAGTAATTTATAAGAA+TGG + chr7_1:24051177-24051196 None:intergenic 15.0%
!!! GCATTTTAAATTATATCAAT+AGG + chr7_1:24051753-24051772 None:intergenic 15.0%
!! ATAACATGGTTTATAAAAAA+GGG + chr7_1:24052420-24052439 None:intergenic 15.0%
!! TATAACATGGTTTATAAAAA+AGG + chr7_1:24052421-24052440 None:intergenic 15.0%
!!! TTTTTTATAAACCATGTTAT+AGG - chr7_1:24052420-24052439 Msa1014700:intron 15.0%
!! GAAAAAAAACAAAAAAAAAC+AGG + chr7_1:24052529-24052548 None:intergenic 15.0%
!!! GAATTTTGTTGTTAAATTTT+AGG - chr7_1:24053249-24053268 Msa1014700:intron 15.0%
!! AAAATAAAATATGTTATCCA+TGG - chr7_1:24053309-24053328 Msa1014700:intron 15.0%
!! AAATTATTTACTAGAGTTTA+AGG - chr7_1:24053576-24053595 Msa1014700:intron 15.0%
!!! AAATTTCCAGATTTTTTGTA+TGG + chr7_1:24050008-24050027 None:intergenic 20.0%
!! TTGAGAAAAAGAAAAAGATT+TGG - chr7_1:24050066-24050085 Msa1014700:three_prime_UTR 20.0%
!! GTAATCTCAATAACTTTATA+TGG + chr7_1:24050322-24050341 None:intergenic 20.0%
!! CAGATAATAATTTGAGAAAT+CGG + chr7_1:24050571-24050590 None:intergenic 20.0%
!! TTCAACTTCCTATTATATAT+AGG + chr7_1:24050675-24050694 None:intergenic 20.0%
!!! TTTTCTCTTATATATTGAAC+CGG - chr7_1:24050720-24050739 Msa1014700:intron 20.0%
!!! TTTGAGGTTTATCATATTAT+AGG + chr7_1:24050964-24050983 None:intergenic 20.0%
!!! AATGAAATTCAAGTTCAAAA+TGG + chr7_1:24051115-24051134 None:intergenic 20.0%
!!! TTCTTTTGTCATTTGATTTA+TGG - chr7_1:24051258-24051277 Msa1014700:intron 20.0%
!!! TTGAATCTTGTATTTTTTTG+TGG - chr7_1:24051282-24051301 Msa1014700:intron 20.0%
!!! GAGCTGTAATTTATTTATTT+TGG - chr7_1:24051609-24051628 Msa1014700:intron 20.0%
!!! TGTTCATTTTAGAAACAAAT+TGG + chr7_1:24051712-24051731 None:intergenic 20.0%
!!! ACTTATCTTTAAAATGAACA+AGG + chr7_1:24051819-24051838 None:intergenic 20.0%
!! AAATACTAGATAATCAATTC+TGG + chr7_1:24051917-24051936 None:intergenic 20.0%
!!! TGATTATCTAGTATTTTGAT+AGG - chr7_1:24051921-24051940 Msa1014700:intron 20.0%
!! TGATTATTGCTGATAAATTA+TGG - chr7_1:24052229-24052248 Msa1014700:intron 20.0%
!! GATTATTGCTGATAAATTAT+GGG - chr7_1:24052230-24052249 Msa1014700:intron 20.0%
!! ATTATTGCTGATAAATTATG+GGG - chr7_1:24052231-24052250 Msa1014700:intron 20.0%
!! AAAACAAAAAAAAACAGGTT+GGG + chr7_1:24052524-24052543 None:intergenic 20.0%
!! AAAAACAAAAAAAAACAGGT+TGG + chr7_1:24052525-24052544 None:intergenic 20.0%
!!! TTGATATGAAAAAATGCTTT+TGG - chr7_1:24052933-24052952 Msa1014700:intron 20.0%
!! ACTTAGTTTAATAATGAGTA+CGG + chr7_1:24053151-24053170 None:intergenic 20.0%
!! ATCTAAATTAGGAATGTAAA+TGG + chr7_1:24053443-24053462 None:intergenic 20.0%
!!! TATAGTATCTTTTTTTCACA+AGG + chr7_1:24053639-24053658 None:intergenic 20.0%
!! GTGAAAAAAAGATACTATAA+AGG - chr7_1:24053640-24053659 Msa1014700:intron 20.0%
!!! TTTACATCATATTTTCATTG+AGG + chr7_1:24053863-24053882 None:intergenic 20.0%
!! CAATGAAAATATGATGTAAA+AGG - chr7_1:24053863-24053882 Msa1014700:intron 20.0%
!!! TTTTATAAGTTTGAGTAGTA+TGG - chr7_1:24054094-24054113 Msa1014700:intron 20.0%
!! AAATAATTCTTTACTGAACA+AGG + chr7_1:24054456-24054475 None:intergenic 20.0%
!! AGAACAAAAGAAAAAAGAAA+TGG + chr7_1:24054552-24054571 None:intergenic 20.0%
! AAAGAAAAAGATTTGGAGAA+TGG - chr7_1:24050073-24050092 Msa1014700:three_prime_UTR 25.0%
! GCATAATTTAGTGTAATCAT+AGG + chr7_1:24050549-24050568 None:intergenic 25.0%
! TTTCTCTTATATATTGAACC+GGG - chr7_1:24050721-24050740 Msa1014700:intron 25.0%
! GTAATCTACCAAAAATTGAT+TGG - chr7_1:24050790-24050809 Msa1014700:intron 25.0%
!! TCTTTGACAAAGATTAGTTA+TGG - chr7_1:24050908-24050927 Msa1014700:intron 25.0%
!! AGTGTCATTAGTTAAAATCA+TGG - chr7_1:24051028-24051047 Msa1014700:intron 25.0%
!! GTGTCATTAGTTAAAATCAT+GGG - chr7_1:24051029-24051048 Msa1014700:intron 25.0%
! GTTGCATTTCAATTCAATAT+AGG - chr7_1:24051054-24051073 Msa1014700:intron 25.0%
! AGAATTCAGCATAGAAAAAT+GGG + chr7_1:24051151-24051170 None:intergenic 25.0%
!! ACTAATGATTTGTCAAATTC+AGG + chr7_1:24051357-24051376 None:intergenic 25.0%
! CAACACTAATATCATTGATA+TGG - chr7_1:24051467-24051486 Msa1014700:intron 25.0%
! ATCAAGATGAAATTGTGAAT+CGG + chr7_1:24051548-24051567 None:intergenic 25.0%
! TAAATTACAGCTCATTGATA+TGG + chr7_1:24051602-24051621 None:intergenic 25.0%
!!! TAAAGATAAGTTCACTTTTG+AGG - chr7_1:24051828-24051847 Msa1014700:intron 25.0%
! AACCTGAATAATATATGATC+TGG - chr7_1:24052282-24052301 Msa1014700:intron 25.0%
! AACCAGATCATATATTATTC+AGG + chr7_1:24052287-24052306 None:intergenic 25.0%
! AATACTTCTTACCTATAACA+TGG + chr7_1:24052434-24052453 None:intergenic 25.0%
!! GACTTGTTTCAATAATATGT+TGG + chr7_1:24052684-24052703 None:intergenic 25.0%
!! ACATTATTACTTGAAAGTAC+TGG + chr7_1:24052706-24052725 None:intergenic 25.0%
!!! AAAAAATGCTTTTGGTTCAA+TGG - chr7_1:24052941-24052960 Msa1014700:intron 25.0%
! CATATAATTAAGCACTTAGA+GGG - chr7_1:24053012-24053031 Msa1014700:intron 25.0%
! ATATAATTAAGCACTTAGAG+GGG - chr7_1:24053013-24053032 Msa1014700:intron 25.0%
! CTTAGTTTAATAATGAGTAC+GGG + chr7_1:24053150-24053169 None:intergenic 25.0%
! TGTCTAATACATTACTAGAA+TGG - chr7_1:24053543-24053562 Msa1014700:intron 25.0%
!!! TGAAAATATTGACTTGCTTT+TGG - chr7_1:24053671-24053690 Msa1014700:intron 25.0%
! ATATTAATGTGATGTTGTGA+TGG - chr7_1:24053706-24053725 Msa1014700:intron 25.0%
!! TCATGGTTTTTAAACTTCAA+AGG + chr7_1:24053739-24053758 None:intergenic 25.0%
! TTAAAAACCATGATTCTGTT+TGG - chr7_1:24053746-24053765 Msa1014700:intron 25.0%
!! ATTATGCAAAGGTCAATTTT+AGG + chr7_1:24053915-24053934 None:intergenic 25.0%
! TAAAATTGACCTTTGCATAA+TGG - chr7_1:24053914-24053933 Msa1014700:intron 25.0%
! TTTATTCATCCATTATGCAA+AGG + chr7_1:24053926-24053945 None:intergenic 25.0%
! TATTATCCTACATTATGTGA+AGG + chr7_1:24054056-24054075 None:intergenic 25.0%
! CATTACGAAAAAACAAAGAA+CGG + chr7_1:24054283-24054302 None:intergenic 25.0%
!!! TTTTGTTTTCAACACCATAA+AGG + chr7_1:24054398-24054417 None:intergenic 25.0%
!! TGTTGAAAACAAAACAGTTT+TGG - chr7_1:24054404-24054423 Msa1014700:intron 25.0%
!! AGAAATGGTATCATTTTACT+TGG + chr7_1:24054537-24054556 None:intergenic 25.0%
! GAAAAATGTGAATTTACTCA+TGG + chr7_1:24054907-24054926 None:intergenic 25.0%
!!! TTCCAGATTTTTTGTATGGT+GGG + chr7_1:24050004-24050023 None:intergenic 30.0%
!!! TTTCCAGATTTTTTGTATGG+TGG + chr7_1:24050005-24050024 None:intergenic 30.0%
AGAGAGTAAAGTAAAATGGA+TGG + chr7_1:24050047-24050066 None:intergenic 30.0%
CTCAAGAGAGTAAAGTAAAA+TGG + chr7_1:24050051-24050070 None:intergenic 30.0%
TTCATCATACAAGAAGAAGA+AGG - chr7_1:24050133-24050152 Msa1014700:exon 30.0%
TCTCAATAACTTTATATGGG+TGG + chr7_1:24050318-24050337 None:intergenic 30.0%
GAAAAATGAATGGAATGGAA+TGG + chr7_1:24050393-24050412 None:intergenic 30.0%
! ATTTTTCACCACTACCTATT+TGG - chr7_1:24050406-24050425 Msa1014700:intron 30.0%
AATTTGATCCAAATAGGTAG+TGG + chr7_1:24050417-24050436 None:intergenic 30.0%
TCTCAGGTCCTATATATAAT+AGG - chr7_1:24050664-24050683 Msa1014700:intron 30.0%
TTCTCTTATATATTGAACCG+GGG - chr7_1:24050722-24050741 Msa1014700:intron 30.0%
ATCTACCAAAAATTGATTGG+TGG - chr7_1:24050793-24050812 Msa1014700:intron 30.0%
TCTACCAAAAATTGATTGGT+GGG - chr7_1:24050794-24050813 Msa1014700:intron 30.0%
! AAATCCCACCAATCAATTTT+TGG + chr7_1:24050801-24050820 None:intergenic 30.0%
AAAAATTGATTGGTGGGATT+TGG - chr7_1:24050800-24050819 Msa1014700:intron 30.0%
TGTCAAAGAACATGTTAGAT+GGG + chr7_1:24050897-24050916 None:intergenic 30.0%
TTGTCAAAGAACATGTTAGA+TGG + chr7_1:24050898-24050917 None:intergenic 30.0%
TTAGTTATGGTTAAACAACG+TGG - chr7_1:24050921-24050940 Msa1014700:intron 30.0%
! AGATTGCAATCACATTTTTG+AGG + chr7_1:24050980-24050999 None:intergenic 30.0%
CAGAATTCAGCATAGAAAAA+TGG + chr7_1:24051152-24051171 None:intergenic 30.0%
AGTTGACAACAATAGAAAGT+GGG + chr7_1:24051220-24051239 None:intergenic 30.0%
AAGTTGACAACAATAGAAAG+TGG + chr7_1:24051221-24051240 None:intergenic 30.0%
AACATAACAATGCTATAGTG+CGG + chr7_1:24051499-24051518 None:intergenic 30.0%
ACTATAGCATTGTTATGTTG+CGG - chr7_1:24051500-24051519 Msa1014700:intron 30.0%
TTAGAAACAAATTGGCTGTA+TGG + chr7_1:24051704-24051723 None:intergenic 30.0%
ATCTTAACACACAACTCTAT+AGG - chr7_1:24051779-24051798 Msa1014700:intron 30.0%
CTTCTCTTGAAGATTTGAAT+TGG - chr7_1:24052175-24052194 Msa1014700:intron 30.0%
!! ATACTAAAAACAGAAGTGTC+AGG + chr7_1:24052373-24052392 None:intergenic 30.0%
ACATGGTTTATAAAAAAGGG+AGG + chr7_1:24052417-24052436 None:intergenic 30.0%
AAGTATTAAAATGCAACCAG+TGG - chr7_1:24052627-24052646 Msa1014700:intron 30.0%
ACCTTGAATGTTTCCTATAA+AGG - chr7_1:24052653-24052672 Msa1014700:intron 30.0%
GTTTCAATAATATGTTGGCA+AGG + chr7_1:24052679-24052698 None:intergenic 30.0%
! TTCCTTGAAAAGAATGCTTT+TGG - chr7_1:24052744-24052763 Msa1014700:intron 30.0%
!!! AACCAAAAGCATTCTTTTCA+AGG + chr7_1:24052749-24052768 None:intergenic 30.0%
!!! AAAGAATGCTTTTGGTTCAA+TGG - chr7_1:24052752-24052771 Msa1014700:intron 30.0%
! CTGACTTTTATGAAGTTGTA+CGG + chr7_1:24052867-24052886 None:intergenic 30.0%
GTACAACTTCATAAAAGTCA+GGG - chr7_1:24052866-24052885 Msa1014700:intron 30.0%
ATCAAATGCACAAATTGCTT+TGG + chr7_1:24052918-24052937 None:intergenic 30.0%
CCTCTAAGTGCTTAATTATA+TGG + chr7_1:24053014-24053033 None:intergenic 30.0%
CCATATAATTAAGCACTTAG+AGG - chr7_1:24053011-24053030 Msa1014700:intron 30.0%
CTATATTGATGCGGATTTAA+TGG - chr7_1:24053106-24053125 Msa1014700:intron 30.0%
!! ACGGATTTTTAGATATCCAT+GGG + chr7_1:24053348-24053367 None:intergenic 30.0%
GATATAATATTTATCCAGCG+AGG - chr7_1:24053380-24053399 Msa1014700:intron 30.0%
TAAATGGATATCCATAGACA+CGG + chr7_1:24053427-24053446 None:intergenic 30.0%
ATCTCTTGCACATCTAAATT+AGG + chr7_1:24053454-24053473 None:intergenic 30.0%
! ATACCTCCTTTTCAACTATA+AGG + chr7_1:24053485-24053504 None:intergenic 30.0%
! ACTAGAGTTTAAGGTAGTTA+TGG - chr7_1:24053585-24053604 Msa1014700:intron 30.0%
AAGATGCAATCATTTCTAAG+AGG - chr7_1:24053991-24054010 Msa1014700:intron 30.0%
TTGTCTTCAATTATATGCCT+AGG + chr7_1:24054020-24054039 None:intergenic 30.0%
ACACCTTTGATCATAAGTAT+CGG + chr7_1:24054167-24054186 None:intergenic 30.0%
!!! CGTTCTTTGTTTTTTCGTAA+TGG - chr7_1:24054281-24054300 Msa1014700:intron 30.0%
ACATTATAAGTGAATGCAGA+TGG - chr7_1:24054311-24054330 Msa1014700:intron 30.0%
CATTATAAGTGAATGCAGAT+GGG - chr7_1:24054312-24054331 Msa1014700:intron 30.0%
CTTCAATTTCTCATCTCATA+TGG + chr7_1:24054339-24054358 None:intergenic 30.0%
AGAAATTGAAGCAAGTCATT+AGG - chr7_1:24054348-24054367 Msa1014700:intron 30.0%
GTATGCATAATTGAATCATG+AGG + chr7_1:24054507-24054526 None:intergenic 30.0%
!! AAGCTTTTCTAATTTGCCAT+TGG + chr7_1:24054833-24054852 None:intergenic 30.0%
ACTGATAAGAAAGTGAAAAC+TGG - chr7_1:24054870-24054889 Msa1014700:five_prime_UTR 30.0%
TTTGAAAAATTGAGACGCTG+TGG - chr7_1:24049974-24049993 Msa1014700:three_prime_UTR 35.0%
AAAGATTTGGAGAATGGCAA+TGG - chr7_1:24050079-24050098 Msa1014700:three_prime_UTR 35.0%
GTGGTGAAAAATGAATGGAA+TGG + chr7_1:24050398-24050417 None:intergenic 35.0%
! AGGTAGTGGTGAAAAATGAA+TGG + chr7_1:24050403-24050422 None:intergenic 35.0%
TATTATCTGTGTCAGTGTGT+CGG - chr7_1:24050582-24050601 Msa1014700:intron 35.0%
TCTCTTATATATTGAACCGG+GGG - chr7_1:24050723-24050742 Msa1014700:intron 35.0%
GGGGTCATATATTCTTCTTA+TGG - chr7_1:24050743-24050762 Msa1014700:intron 35.0%
TGATCTCTGACTATTGTGTA+TGG - chr7_1:24050849-24050868 Msa1014700:intron 35.0%
GTGTATGGAGAAAATTCAGT+TGG - chr7_1:24050864-24050883 Msa1014700:intron 35.0%
TATGGAGAAAATTCAGTTGG+AGG - chr7_1:24050867-24050886 Msa1014700:intron 35.0%
TTCAGCATAGAAAAATGGGT+GGG + chr7_1:24051147-24051166 None:intergenic 35.0%
ATTCAGCATAGAAAAATGGG+TGG + chr7_1:24051148-24051167 None:intergenic 35.0%
GTTGACAACAATAGAAAGTG+GGG + chr7_1:24051219-24051238 None:intergenic 35.0%
TTGTGAATCGTGGAAAATAG+TGG + chr7_1:24051443-24051462 None:intergenic 35.0%
TCAGTCAGAAACTTCTAACA+TGG + chr7_1:24051959-24051978 None:intergenic 35.0%
TTAGAAGTTTCTGACTGAAC+TGG - chr7_1:24051961-24051980 Msa1014700:intron 35.0%
! ATTTTACTTCCCTTCACTAG+CGG + chr7_1:24052026-24052045 None:intergenic 35.0%
TTCTGTTACATACCCTACAA+TGG - chr7_1:24052056-24052075 Msa1014700:intron 35.0%
AAGAGAGAGATTCCATTGTA+GGG + chr7_1:24052071-24052090 None:intergenic 35.0%
CTCTCTTGGAATACATATCT+AGG - chr7_1:24052084-24052103 Msa1014700:intron 35.0%
AATTATGGGGTTAGATGCAA+AGG - chr7_1:24052244-24052263 Msa1014700:intron 35.0%
ACTCATTCCTGTTACCTAAT+AGG + chr7_1:24052493-24052512 None:intergenic 35.0%
! AAAAAAAAACAGGTTGGGAG+GGG + chr7_1:24052519-24052538 None:intergenic 35.0%
! CAAAAAAAAACAGGTTGGGA+GGG + chr7_1:24052520-24052539 None:intergenic 35.0%
! ACAAAAAAAAACAGGTTGGG+AGG + chr7_1:24052521-24052540 None:intergenic 35.0%
TCAGAATATCAGAGACCTAA+GGG + chr7_1:24052606-24052625 None:intergenic 35.0%
ATCAGAATATCAGAGACCTA+AGG + chr7_1:24052607-24052626 None:intergenic 35.0%
GCCTTTATAGGAAACATTCA+AGG + chr7_1:24052657-24052676 None:intergenic 35.0%
!!! TTTGCACCAGTGTTACTTTT+TGG - chr7_1:24052840-24052859 Msa1014700:intron 35.0%
CGTACAACTTCATAAAAGTC+AGG - chr7_1:24052865-24052884 Msa1014700:intron 35.0%
CTTAGAGGGGATTTAGATTA+TGG - chr7_1:24053026-24053045 Msa1014700:intron 35.0%
GACAAAATTTATCCGCGATT+GGG + chr7_1:24053068-24053087 None:intergenic 35.0%
TGACAAAATTTATCCGCGAT+TGG + chr7_1:24053069-24053088 None:intergenic 35.0%
! TAAATTTTGTCACAGACACG+AGG - chr7_1:24053077-24053096 Msa1014700:intron 35.0%
ATAATGAGTACGGGTATTTG+CGG + chr7_1:24053141-24053160 None:intergenic 35.0%
!! CACGGATTTTTAGATATCCA+TGG + chr7_1:24053349-24053368 None:intergenic 35.0%
CATGGATATCTAAAAATCCG+TGG - chr7_1:24053347-24053366 Msa1014700:intron 35.0%
AAAAATCCGTGGATAAGACA+CGG - chr7_1:24053358-24053377 Msa1014700:intron 35.0%
TTATATCCGTGTCTTATCCA+CGG + chr7_1:24053367-24053386 None:intergenic 35.0%
ATAATATTTATCCAGCGAGG+CGG - chr7_1:24053383-24053402 Msa1014700:intron 35.0%
TATCATACTATCCGTGTCTA+TGG - chr7_1:24053413-24053432 Msa1014700:intron 35.0%
TGTGCACCTTATAGTTGAAA+AGG - chr7_1:24053476-24053495 Msa1014700:intron 35.0%
AAAGAAGCCAAACAGAATCA+TGG + chr7_1:24053756-24053775 None:intergenic 35.0%
CCAATCTACTAAGCAGAAAA+GGG + chr7_1:24053785-24053804 None:intergenic 35.0%
TCCAATCTACTAAGCAGAAA+AGG + chr7_1:24053786-24053805 None:intergenic 35.0%
GAAAAAACAAAGAACGGACA+CGG + chr7_1:24054277-24054296 None:intergenic 35.0%
! TTTTCAACACCATAAAGGCA+AGG + chr7_1:24054393-24054412 None:intergenic 35.0%
TTAAAGCAGAACTTGCAATG+TGG - chr7_1:24054572-24054591 Msa1014700:CDS 35.0%
AATACGAACAAAGCGAAAAG+AGG - chr7_1:24054669-24054688 Msa1014700:intron 35.0%
GCAAAAGAAAGACACAAACA+GGG + chr7_1:24054796-24054815 None:intergenic 35.0%
TGCAAAAGAAAGACACAAAC+AGG + chr7_1:24054797-24054816 None:intergenic 35.0%
GTCCCACCATACAAAAAATC+TGG - chr7_1:24049999-24050018 Msa1014700:three_prime_UTR 40.0%
! CTGGAAATTTTCAGCCTTTG+TGG - chr7_1:24050018-24050037 Msa1014700:three_prime_UTR 40.0%
AAAATGGATGGCTACCACAA+AGG + chr7_1:24050035-24050054 None:intergenic 40.0%
TCATCCAGCATGATGAACAT+AGG - chr7_1:24050104-24050123 Msa1014700:three_prime_UTR 40.0%
AAGACCTATGTTCATCATGC+TGG + chr7_1:24050111-24050130 None:intergenic 40.0%
! TGTGCAGACTATGTTGTTTG+AGG - chr7_1:24050237-24050256 Msa1014700:CDS 40.0%
TGGAATGGAATGGAAGCTTA+CGG + chr7_1:24050383-24050402 None:intergenic 40.0%
CTCTTATATATTGAACCGGG+GGG - chr7_1:24050724-24050743 Msa1014700:intron 40.0%
AAGAAGAATATATGACCCCC+CGG + chr7_1:24050742-24050761 None:intergenic 40.0%
AAAGTGGGGCTACAATGATT+AGG + chr7_1:24051205-24051224 None:intergenic 40.0%
GTGTTGTCAATTGTGAATCG+TGG + chr7_1:24051453-24051472 None:intergenic 40.0%
CTGGACAGTACTAATGTTCA+AGG - chr7_1:24051980-24051999 Msa1014700:intron 40.0%
CAAGAGAGAGATTCCATTGT+AGG + chr7_1:24052072-24052091 None:intergenic 40.0%
CTACAATGGAATCTCTCTCT+TGG - chr7_1:24052070-24052089 Msa1014700:intron 40.0%
! TGGAGATTGGTCACTGTTAA+CGG + chr7_1:24052462-24052481 None:intergenic 40.0%
TAACAGTGACCAATCTCCAT+CGG - chr7_1:24052463-24052482 Msa1014700:intron 40.0%
TTACCTAATAGGTTCACCGA+TGG + chr7_1:24052482-24052501 None:intergenic 40.0%
! TTTTTCCATACGCAAGAGCT+AGG - chr7_1:24052543-24052562 Msa1014700:intron 40.0%
AAACATTCAAGGTTGTCCAC+TGG + chr7_1:24052646-24052665 None:intergenic 40.0%
TATGTTGGCAAGGCCTTTAT+AGG + chr7_1:24052669-24052688 None:intergenic 40.0%
TACGGTCCAAAAAGTAACAC+TGG + chr7_1:24052849-24052868 None:intergenic 40.0%
CTCTGATACTAGATTCTCGA+AGG - chr7_1:24052978-24052997 Msa1014700:intron 40.0%
AATTTATCCGCGATTGGGTA+CGG + chr7_1:24053063-24053082 None:intergenic 40.0%
AGGCGGATACTATATTGATG+CGG - chr7_1:24053097-24053116 Msa1014700:intron 40.0%
TAATGAGTACGGGTATTTGC+GGG + chr7_1:24053140-24053159 None:intergenic 40.0%
TGGGTATACACATATGTCCA+TGG + chr7_1:24053329-24053348 None:intergenic 40.0%
TGGACATATGTGTATACCCA+TGG - chr7_1:24053329-24053348 Msa1014700:intron 40.0%
GCACCTTATAGTTGAAAAGG+AGG - chr7_1:24053479-24053498 Msa1014700:intron 40.0%
! CCCTTTTCTGCTTAGTAGAT+TGG - chr7_1:24053782-24053801 Msa1014700:intron 40.0%
! AGATTGGATTTTCCTTCTCG+TGG - chr7_1:24053798-24053817 Msa1014700:intron 40.0%
! GATTGGATTTTCCTTCTCGT+GGG - chr7_1:24053799-24053818 Msa1014700:intron 40.0%
AAGATTGAGTGTCAGTGGTT+TGG - chr7_1:24053822-24053841 Msa1014700:intron 40.0%
!! TCATTTCTAAGAGGCATCCT+AGG - chr7_1:24054000-24054019 Msa1014700:intron 40.0%
ATTGAAGACAACCCATGTGT+TGG - chr7_1:24054029-24054048 Msa1014700:intron 40.0%
TATGTGAAGGTCCAACACAT+GGG + chr7_1:24054043-24054062 None:intergenic 40.0%
TTATGTGAAGGTCCAACACA+TGG + chr7_1:24054044-24054063 None:intergenic 40.0%
GTTGGACCTTCACATAATGT+AGG - chr7_1:24054047-24054066 Msa1014700:intron 40.0%
! GCACCGATACTTATGATCAA+AGG - chr7_1:24054161-24054180 Msa1014700:intron 40.0%
! CTTATGATCAAAGGTGTGTC+TGG - chr7_1:24054170-24054189 Msa1014700:intron 40.0%
CTCACGTGTCAATATAGTGT+CGG + chr7_1:24054197-24054216 None:intergenic 40.0%
GGCAAGGAACAAACACAATT+AGG + chr7_1:24054377-24054396 None:intergenic 40.0%
GTGTTTGTTCCTTGCCTTTA+TGG - chr7_1:24054381-24054400 Msa1014700:intron 40.0%
CTATTTCAGCTGTAACGCTT+CGG - chr7_1:24054627-24054646 Msa1014700:CDS 40.0%
GCAACTACATTCAGAACCAA+TGG - chr7_1:24054814-24054833 Msa1014700:five_prime_UTR 40.0%
AATGGAATGGAAGCTTACGG+GGG + chr7_1:24050380-24050399 None:intergenic 45.0%
GAATGGAATGGAAGCTTACG+GGG + chr7_1:24050381-24050400 None:intergenic 45.0%
GGAATGGAATGGAAGCTTAC+GGG + chr7_1:24050382-24050401 None:intergenic 45.0%
GCACGAACACTCCTCATATT+AGG - chr7_1:24050476-24050495 Msa1014700:intron 45.0%
ACTGGGACACACCTAATATG+AGG + chr7_1:24050490-24050509 None:intergenic 45.0%
TATTAGGTGTGTCCCAGTGT+CGG - chr7_1:24050492-24050511 Msa1014700:intron 45.0%
GCTTCATTCGTTACTCTCTC+AGG - chr7_1:24050648-24050667 Msa1014700:intron 45.0%
ATTTGGACCCCTTAACCAAG+TGG - chr7_1:24050817-24050836 Msa1014700:intron 45.0%
TTTGGACCCCTTAACCAAGT+GGG - chr7_1:24050818-24050837 Msa1014700:intron 45.0%
ACCCATACCCACTTGGTTAA+GGG + chr7_1:24050828-24050847 None:intergenic 45.0%
! AGGCATCAAAGCCGATCTTT+TGG - chr7_1:24052000-24052019 Msa1014700:intron 45.0%
TTCACTAGCGGCCAAAAGAT+CGG + chr7_1:24052014-24052033 None:intergenic 45.0%
! ATCTTTTGGCCGCTAGTGAA+GGG - chr7_1:24052014-24052033 Msa1014700:intron 45.0%
! AGATTGGTCACTGTTAACGG+CGG + chr7_1:24052459-24052478 None:intergenic 45.0%
ATAGGTTCACCGATGGAGAT+TGG + chr7_1:24052475-24052494 None:intergenic 45.0%
TCTCCATCGGTGAACCTATT+AGG - chr7_1:24052476-24052495 Msa1014700:intron 45.0%
CGGTGAACCTATTAGGTAAC+AGG - chr7_1:24052483-24052502 Msa1014700:intron 45.0%
! TGATTCCTAGCTCTTGCGTA+TGG + chr7_1:24052551-24052570 None:intergenic 45.0%
ACTCGGACACTTCAAGCAAA+TGG + chr7_1:24052583-24052602 None:intergenic 45.0%
TATCAGAGACCTAAGGGACT+CGG + chr7_1:24052600-24052619 None:intergenic 45.0%
AACACTGGTGCAAAAGCAAG+TGG + chr7_1:24052834-24052853 None:intergenic 45.0%
AAAAGTCAGGGAAAGCTCTC+TGG - chr7_1:24052878-24052897 Msa1014700:intron 45.0%
CAAAAATCCGTACCCAATCG+CGG - chr7_1:24053053-24053072 Msa1014700:intron 45.0%
! ATTTTGTCACAGACACGAGG+CGG - chr7_1:24053080-24053099 Msa1014700:intron 45.0%
! ATTGAGTGTCAGTGGTTTGG+AGG - chr7_1:24053825-24053844 Msa1014700:intron 45.0%
!! GGAGAGAGTGTCACAATTGA+AGG - chr7_1:24054593-24054612 Msa1014700:CDS 45.0%
!!! ATTTTTATTTTTTATTGTTA+AGG + chr7_1:24053179-24053198 None:intergenic 5.0%
AGAGACAGAGACAGAGAACG+AGG - chr7_1:24050277-24050296 Msa1014700:CDS 50.0%
CAACGAACGCCAAGAGACTT+GGG + chr7_1:24050352-24050371 None:intergenic 50.0%
ACAACGAACGCCAAGAGACT+TGG + chr7_1:24050353-24050372 None:intergenic 50.0%
ATGGAATGGAAGCTTACGGG+GGG + chr7_1:24050379-24050398 None:intergenic 50.0%
! CATAGGTGTCGTGTCAGTGT+TGG + chr7_1:24050532-24050551 None:intergenic 50.0%
GTATGTGTCTGTGTCGTGTC+TGG - chr7_1:24050606-24050625 Msa1014700:intron 50.0%
ACCCCTTAACCAAGTGGGTA+TGG - chr7_1:24050823-24050842 Msa1014700:intron 50.0%
CCCATACCCACTTGGTTAAG+GGG + chr7_1:24050827-24050846 None:intergenic 50.0%
CCCCTTAACCAAGTGGGTAT+GGG - chr7_1:24050824-24050843 Msa1014700:intron 50.0%
GACCCATACCCACTTGGTTA+AGG + chr7_1:24050829-24050848 None:intergenic 50.0%
AGATCAGACCCATACCCACT+TGG + chr7_1:24050835-24050854 None:intergenic 50.0%
GTGGGGCTACAATGATTAGG+TGG + chr7_1:24051202-24051221 None:intergenic 50.0%
! GATCTTTTGGCCGCTAGTGA+AGG - chr7_1:24052013-24052032 Msa1014700:intron 50.0%
! TTGAAGTGTCCGAGTCCCTT+AGG - chr7_1:24052588-24052607 Msa1014700:intron 50.0%
CACTCAATCTTCCCACGAGA+AGG + chr7_1:24053813-24053832 None:intergenic 50.0%
GTGGGAAGATTGAGTGTCAG+TGG - chr7_1:24053817-24053836 Msa1014700:intron 50.0%
TTCGGTACCAGCTTCGCAAA+GGG - chr7_1:24054645-24054664 Msa1014700:intron 50.0%
CGTATTTCCCTTTGCGAAGC+TGG + chr7_1:24054655-24054674 None:intergenic 50.0%
! AGGCTCGATGTTTTGTCGAC+AGG - chr7_1:24054689-24054708 Msa1014700:intron 50.0%
ACTCCTCCACCCAAGTCTCT+TGG - chr7_1:24050340-24050359 Msa1014700:intron 55.0%
ACTGACGCATGTCCGACACT+GGG + chr7_1:24050507-24050526 None:intergenic 55.0%
GATATTTGTGTCCGCCTCGC+TGG + chr7_1:24053397-24053416 None:intergenic 55.0%
CTTCGGTACCAGCTTCGCAA+AGG - chr7_1:24054644-24054663 Msa1014700:intron 55.0%
ACGCCAAGAGACTTGGGTGG+AGG + chr7_1:24050346-24050365 None:intergenic 60.0%
CGAACGCCAAGAGACTTGGG+TGG + chr7_1:24050349-24050368 None:intergenic 60.0%
CACTGACGCATGTCCGACAC+TGG + chr7_1:24050508-24050527 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 24049970 24054926 24049970 ID=Msa1014700;Name=Msa1014700
chr7_1 mRNA 24049970 24054926 24049970 ID=Msa1014700-mRNA-1;Parent=Msa1014700;Name=Msa1014700-mRNA-1;_AED=0.01;_eAED=0.01;_QI=122|1|1|1|0.5|0.66|3|166|126
chr7_1 exon 24049970 24050315 24049970 ID=Msa1014700-mRNA-1:exon:5536;Parent=Msa1014700-mRNA-1
chr7_1 exon 24054515 24054652 24054515 ID=Msa1014700-mRNA-1:exon:5535;Parent=Msa1014700-mRNA-1
chr7_1 exon 24054742 24054926 24054742 ID=Msa1014700-mRNA-1:exon:5534;Parent=Msa1014700-mRNA-1
chr7_1 five_prime_UTR 24054805 24054926 24054805 ID=Msa1014700-mRNA-1:five_prime_utr;Parent=Msa1014700-mRNA-1
chr7_1 CDS 24054742 24054804 24054742 ID=Msa1014700-mRNA-1:cds;Parent=Msa1014700-mRNA-1
chr7_1 CDS 24054515 24054652 24054515 ID=Msa1014700-mRNA-1:cds;Parent=Msa1014700-mRNA-1
chr7_1 CDS 24050136 24050315 24050136 ID=Msa1014700-mRNA-1:cds;Parent=Msa1014700-mRNA-1
chr7_1 three_prime_UTR 24049970 24050135 24049970 ID=Msa1014700-mRNA-1:three_prime_utr;Parent=Msa1014700-mRNA-1
Gene Sequence

>Msa1014700

ATGGCAATGGCATCATCCAGCATGATGAACATAGGTCTTGCTTCATCATACAAGAAGAAGAAGACTATGTTGTTTGAGGTATCATGCAGTAGAAAGAGAGACAGAGACAGAGAACGAGGTAGTAACAGTAGTATCCACCCATATAAAGTTATTGAGATTACTCCTCCACCCAAGTCTCTTGGCGTTCGTTGTCTTCCCCCCAACTTGCAATGTGGAGAGAGTGTCACAATTGAAGGACAGACTTATACTATTTCAGCTGTAACGCTTCGGTACCAGCTTCGCAAAGGGAAATACGAACAAAGCGAAAAGAGGCTCGATGTTTTGTCGACAGGAAGATACTTAGTAAATTTGTATTTTGAAAATTTATTAGAACAATCTTGA

Protein sequence

>Msa1014700

MAMASSSMMNIGLASSYKKKKTMLFEVSCSRKRDRDRERGSNSSIHPYKVIEITPPPKSLGVRCLPPNLQCGESVTIEGQTYTISAVTLRYQLRKGKYEQSEKRLDVLSTGRYLVNLYFENLLEQS*