AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0007580

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0007580 MtrunA17_Chr1g0148241 90.750 400 9 2 1 373 1 399 0.0 741
Msa0007580 MtrunA17_Chr3g0138871 61.917 386 109 5 16 371 1 378 1.84e-177 498
Msa0007580 MtrunA17_Chr4g0071911 59.173 387 124 3 13 372 14 393 1.66e-164 466
Msa0007580 MtrunA17_Chr2g0298501 56.154 390 135 5 11 372 11 392 1.51e-150 430
Msa0007580 MtrunA17_Chr2g0298511 50.250 400 154 5 1 372 1 383 6.33e-133 385
Msa0007580 MtrunA17_Chr1g0151841 36.915 363 183 9 35 369 28 372 2.55e-64 209
Msa0007580 MtrunA17_Chr1g0209531 37.600 375 176 11 30 366 32 386 2.35e-63 207
Msa0007580 MtrunA17_Chr2g0276861 41.356 295 134 4 103 373 159 438 4.02e-60 200
Msa0007580 MtrunA17_Chr8g0341461 39.490 314 148 7 78 366 110 406 2.96e-59 197
Msa0007580 MtrunA17_Chr5g0423131 37.419 310 150 6 80 364 91 381 9.19e-57 190
Msa0007580 MtrunA17_Chr6g0484141 38.929 280 128 5 111 364 148 410 4.09e-54 184
Msa0007580 MtrunA17_Chr5g0394961 38.710 279 130 5 111 364 150 412 9.81e-52 177
Msa0007580 MtrunA17_Chr3g0136091 37.113 291 159 5 81 364 111 384 1.36e-51 176
Msa0007580 MtrunA17_Chr4g0073871 37.555 229 105 3 167 373 9 221 9.10e-43 148
Msa0007580 MtrunA17_Chr2g0289021 33.221 298 137 9 112 355 61 350 1.47e-42 152
Msa0007580 MtrunA17_Chr8g0384601 31.847 314 151 8 108 366 51 356 1.04e-40 147
Msa0007580 MtrunA17_Chr5g0394981 36.199 221 101 4 167 364 2 205 7.12e-38 135
Msa0007580 MtrunA17_Chr1g0170231 33.667 300 129 11 112 366 63 337 1.30e-36 135
Msa0007580 MtrunA17_Chr3g0137661 31.742 356 176 18 50 366 42 369 3.69e-32 124
Msa0007580 MtrunA17_Chr2g0322161 27.812 320 146 12 103 364 66 358 1.46e-26 108
Msa0007580 MtrunA17_Chr1g0170151 29.276 304 149 7 105 366 57 336 4.77e-25 104
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0007580 AT4G31350.4 54.948 384 137 4 17 373 1 375 5.95e-143 410
Msa0007580 AT4G31350.1 54.948 384 137 4 17 373 1 375 5.95e-143 410
Msa0007580 AT4G31350.2 54.948 384 137 4 17 373 1 375 5.95e-143 410
Msa0007580 AT2G19160.2 51.309 382 151 4 19 373 20 393 4.69e-141 406
Msa0007580 AT2G19160.1 51.309 382 151 4 19 373 20 393 4.69e-141 406
Msa0007580 AT5G57270.3 51.163 387 153 4 16 372 5 385 5.49e-141 406
Msa0007580 AT5G57270.1 51.163 387 153 4 16 372 5 385 5.49e-141 406
Msa0007580 AT5G57270.4 51.163 387 153 4 16 372 5 385 5.49e-141 406
Msa0007580 AT5G57270.5 51.163 387 153 4 16 372 5 385 5.49e-141 406
Msa0007580 AT5G57270.2 51.163 387 153 4 16 372 5 385 5.49e-141 406
Msa0007580 AT4G25870.1 49.610 385 159 4 16 371 7 385 1.14e-139 403
Msa0007580 AT4G31350.3 54.167 384 135 5 17 373 1 370 8.10e-138 397
Msa0007580 AT4G30060.2 50.262 382 153 5 19 371 21 394 1.62e-133 387
Msa0007580 AT4G30060.1 50.262 382 153 5 19 371 21 394 1.62e-133 387
Msa0007580 AT3G21310.1 40.895 313 144 6 78 366 81 376 2.02e-62 205
Msa0007580 AT3G21310.3 40.895 313 144 6 78 366 81 376 2.02e-62 205
Msa0007580 AT5G11730.1 41.083 314 142 7 78 366 84 379 2.25e-62 205
Msa0007580 AT5G25970.1 41.993 281 121 5 111 366 117 380 3.22e-61 202
Msa0007580 AT5G25970.2 41.993 281 121 5 111 366 117 380 3.22e-61 202
Msa0007580 AT5G25970.3 41.993 281 121 5 111 366 117 380 3.22e-61 202
Msa0007580 AT1G73810.1 42.199 282 118 6 113 366 147 411 4.36e-61 202
Msa0007580 AT1G51770.1 40.063 317 147 7 75 366 87 385 6.81e-61 201
Msa0007580 AT1G68390.1 38.750 320 151 7 74 366 100 401 1.68e-60 201
Msa0007580 AT5G16170.1 41.727 278 127 4 113 366 136 402 3.21e-59 197
Msa0007580 AT1G10280.1 39.937 318 151 6 80 373 111 412 8.55e-58 194
Msa0007580 AT1G10880.1 39.437 284 130 7 108 366 113 379 1.16e-56 190
Msa0007580 AT1G68380.1 34.908 381 176 11 31 368 36 387 7.67e-56 188
Msa0007580 AT5G14550.4 37.132 272 135 10 112 355 64 327 1.21e-44 157
Msa0007580 AT1G51770.2 35.647 317 134 8 75 366 87 358 1.55e-44 158
Msa0007580 AT3G21310.2 46.821 173 89 2 78 248 81 252 2.71e-41 146
Msa0007580 AT5G14550.3 33.779 299 135 10 112 355 64 354 1.54e-40 147
Msa0007580 AT5G14550.1 33.779 299 135 10 112 355 64 354 2.33e-40 147
Msa0007580 AT5G25330.1 36.426 291 131 15 113 366 81 354 1.34e-37 139
Msa0007580 AT3G52060.1 32.414 290 136 10 112 366 74 338 1.87e-37 138
Msa0007580 AT5G14550.2 35.458 251 111 9 112 317 64 308 1.12e-36 136
Msa0007580 AT1G11940.1 32.680 306 145 11 112 364 73 370 1.18e-36 137
Msa0007580 AT1G62305.1 32.997 297 137 11 112 355 68 355 2.45e-36 136
Msa0007580 AT1G62305.3 43.709 151 75 4 112 256 68 214 4.36e-31 120
Msa0007580 AT4G32290.1 32.515 326 167 10 80 366 60 371 6.67e-31 121
Msa0007580 AT5G22070.1 28.896 308 141 9 113 366 71 354 1.63e-28 114
Msa0007580 AT1G11940.2 42.384 151 78 4 112 256 73 220 1.84e-28 112
Msa0007580 AT1G62305.2 29.966 297 122 12 112 355 68 331 1.15e-23 100

Find 132 sgRNAs with CRISPR-Local

Find 353 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACATACGACATAGCTTATT+TGG 0.115601 1_1:+10864815 Msa0007580:three_prime_UTR
TTTGCGTTTGCGTTTGTATT+TGG 0.199099 1_1:-10859100 None:intergenic
AATACAAAATGTTGGTTATC+AGG 0.204352 1_1:-10862389 None:intergenic
ATAAATACTTCTTCATTCTT+TGG 0.235633 1_1:+10864755 Msa0007580:three_prime_UTR
ATCAATTTATCTTGAGTTTC+CGG 0.235833 1_1:-10864694 None:intergenic
CAACGTTGGTGTTGTGTGTT+TGG 0.278042 1_1:-10859260 None:intergenic
TTCTGAGGGTTGAAAAGTTT+TGG 0.280828 1_1:+10865013 Msa0007580:three_prime_UTR
ATTGCACCTTGCGAGTTAAA+TGG 0.295978 1_1:+10864631 Msa0007580:CDS
GATGTCTCGTCCAACAAAAT+AGG 0.299048 1_1:-10861151 None:intergenic
TTGCGGTTTCCCTCCATATT+CGG 0.306368 1_1:-10863332 None:intergenic
TTAAATTTATCAGCCGAATA+TGG 0.312461 1_1:+10863319 Msa0007580:intron
AACGTTGGTGTTGTGTGTTT+GGG 0.317656 1_1:-10859259 None:intergenic
CCGAGATTCAGTCTCTTTAT+CGG 0.320366 1_1:-10860700 None:intergenic
GCTTGTCTGGTTAGATAATA+TGG 0.322305 1_1:+10864928 Msa0007580:three_prime_UTR
CAAACTTAAAGAGGCCTACT+TGG 0.327146 1_1:+10860508 Msa0007580:CDS
TTGATTGGTCCGAAGGAAAA+TGG 0.332260 1_1:+10863522 Msa0007580:CDS
GAGTTTCCGGATAAAACTTC+CGG 0.336942 1_1:-10864681 None:intergenic
AATGGCATCCTAGGTCATTC+AGG 0.339509 1_1:+10863540 Msa0007580:CDS
TTGCGTTTGCGTTTGTATTT+GGG 0.352127 1_1:-10859099 None:intergenic
AACTTGGGGAAGAATTTCTA+TGG 0.357256 1_1:+10862325 Msa0007580:CDS
GTTGACATTGTTTCTTCATC+AGG 0.373383 1_1:+10859279 Msa0007580:five_prime_UTR
GCTTTCTTCATTTAAGTTCA+AGG 0.382059 1_1:-10860426 None:intergenic
GATCCCTGCATTCAATTCAT+AGG 0.384468 1_1:+10859313 Msa0007580:five_prime_UTR
TTTCCTGGGGCTTGATGAAA+TGG 0.385080 1_1:+10864896 Msa0007580:three_prime_UTR
ATGTCTCGTCCAACAAAATA+GGG 0.391447 1_1:-10861150 None:intergenic
ATCCAGGCGGAATCGCAAAT+TGG 0.399315 1_1:+10863486 Msa0007580:CDS
TGAGGCGGAAAGGAGACTTT+TGG 0.402038 1_1:+10862349 Msa0007580:CDS
AAAACATAAAAGCAACTTTA+GGG 0.408320 1_1:-10860770 None:intergenic
TCAATTTCTTTCAGGTAACT+TGG 0.409545 1_1:+10862309 Msa0007580:intron
GCTCTGGCATACATTCTTCC+AGG 0.421167 1_1:+10860821 Msa0007580:CDS
AGATAATTGCTTTGAGCGTA+TGG 0.432358 1_1:+10865197 Msa0007580:three_prime_UTR
GGGTGGTGTCGTGTTTGGAT+TGG 0.435090 1_1:-10859237 None:intergenic
GTATGTGCGAAAGATGGTTC+TGG 0.438017 1_1:-10864799 None:intergenic
TTTGGTGAATCAACACCATA+TGG 0.440790 1_1:+10864773 Msa0007580:three_prime_UTR
TTTAGATTTGAAACGCCAAT+TGG 0.446204 1_1:-10859206 None:intergenic
CAATTTCTTTCAGGTAACTT+GGG 0.448407 1_1:+10862310 Msa0007580:intron
GACCAATTTGCGATTCCGCC+TGG 0.448772 1_1:-10863488 None:intergenic
GGTGAATTCCCGAGTCTGTA+CGG 0.449505 1_1:-10860679 None:intergenic
AACAAAATATATTGTAGAAT+AGG 0.451471 1_1:-10864955 None:intergenic
GATACCGGTCCGCATGGAAA+TGG 0.453440 1_1:+10862870 Msa0007580:CDS
TCTCAAGGTTGTAGTGTTGT+TGG 0.455242 1_1:+10860624 Msa0007580:CDS
AGATGGTTCTGGGGACCATA+TGG 0.458184 1_1:-10864788 None:intergenic
CAAGTGTCAGCTTTATTGAC+AGG 0.461823 1_1:+10862701 Msa0007580:CDS
AGTTTCCGGATAAAACTTCC+GGG 0.462746 1_1:-10864680 None:intergenic
AGGCTAGAGAGGGAGGGATA+AGG 0.464072 1_1:+10865046 Msa0007580:three_prime_UTR
ATGGAACTTCTGAGCTTGTC+TGG 0.468474 1_1:+10864915 Msa0007580:three_prime_UTR
TGTTCTTTGTTTAACTCTCA+AGG 0.472432 1_1:+10860609 Msa0007580:CDS
ATCCATCAGCCTCAGCCGTC+GGG 0.472492 1_1:-10864845 None:intergenic
GGGAAGAATTTCTATGGTTG+AGG 0.477859 1_1:+10862331 Msa0007580:CDS
CCGAAGGAAAATGGCATCCT+AGG 0.478726 1_1:+10863531 Msa0007580:CDS
GACACAGATCAAACTTAAAG+AGG 0.482413 1_1:+10860499 Msa0007580:CDS
TGGTATCAACGTTCTCCAAT+TGG 0.486486 1_1:+10859191 Msa0007580:five_prime_UTR
TCCCGAGTCTGTACGGGTGG+TGG 0.487361 1_1:-10860672 None:intergenic
AATACCTATGAATTGAATGC+AGG 0.488603 1_1:-10859317 None:intergenic
AGAGAGGGAGGGATAAGGTT+TGG 0.493480 1_1:+10865051 Msa0007580:three_prime_UTR
TTCCCGACGGCTGAGGCTGA+TGG 0.495389 1_1:+10864843 Msa0007580:three_prime_UTR
TATGTGCGAAAGATGGTTCT+GGG 0.496070 1_1:-10864798 None:intergenic
GTTGCTGTGCTACTAAGTTC+AGG 0.502540 1_1:-10859043 None:intergenic
TATGTTTAGATGCTTGATCC+AGG 0.504214 1_1:+10863470 Msa0007580:intron
GGTCGGTGACATATGTTGAT+TGG 0.514974 1_1:+10863507 Msa0007580:CDS
AGCCACCACCCGTACAGACT+CGG 0.518673 1_1:+10860670 Msa0007580:CDS
ACGAGACATCCACAGTGAAC+CGG 0.526163 1_1:+10861164 Msa0007580:CDS
ATGTAGTTGAATTCGAGAAA+AGG 0.526682 1_1:-10864720 None:intergenic
AAACTAATGCAGGGCCATGA+AGG 0.526685 1_1:+10861075 Msa0007580:intron
ATACAAAATGTTGGTTATCA+GGG 0.528558 1_1:-10862388 None:intergenic
CAAGGTTGTAGTGTTGTTGG+TGG 0.530530 1_1:+10860627 Msa0007580:CDS
GGAGAAGTTCCCGACGGCTG+AGG 0.530631 1_1:+10864836 Msa0007580:three_prime_UTR
CGATAAAGAGACTGAATCTC+GGG 0.531188 1_1:+10860701 Msa0007580:CDS
GTATGCCAGAGCTTCTCAAA+AGG 0.532388 1_1:-10860810 None:intergenic
ACAAAATCAAAGCGGCGCAC+TGG 0.534914 1_1:-10862658 None:intergenic
GTGTCGTGTTTGGATTGGAT+CGG 0.535157 1_1:-10859232 None:intergenic
GTTGCCTGAAGTAGAAAAGA+AGG 0.536747 1_1:+10862911 Msa0007580:CDS
GATCTTGTTATCTATTTGCC+CGG 0.539473 1_1:+10864662 Msa0007580:CDS
TTTGCATCACTTGTATAATG+TGG 0.541176 1_1:-10864470 None:intergenic
AAATAGGGGCTGACATGTAT+CGG 0.542436 1_1:-10861135 None:intergenic
GCCACCACCCGTACAGACTC+GGG 0.543889 1_1:+10860671 Msa0007580:CDS
GATGCGTATGGAGAAGTTGA+AGG 0.544754 1_1:+10860399 Msa0007580:five_prime_UTR
GTGAATTCCCGAGTCTGTAC+GGG 0.546668 1_1:-10860678 None:intergenic
TGATAGATTACAGATGCGTA+TGG 0.547593 1_1:+10860387 Msa0007580:five_prime_UTR
GTTCCATTTCATCAAGCCCC+AGG 0.549265 1_1:-10864899 None:intergenic
TGTCTATGTACATGCATCAA+AGG 0.549613 1_1:+10861107 Msa0007580:CDS
ATGGCATCCTAGGTCATTCA+GGG 0.550473 1_1:+10863541 Msa0007580:CDS
AGATTATTAGATTCTTCTGA+GGG 0.550903 1_1:+10864999 Msa0007580:three_prime_UTR
TCTTGATAGGCTAGAGAGGG+AGG 0.551094 1_1:+10865039 Msa0007580:three_prime_UTR
TTGACATTGTTTCTTCATCA+GGG 0.551846 1_1:+10859280 Msa0007580:five_prime_UTR
TTCTCAAAAGGTAATGATCC+CGG 0.552277 1_1:-10860798 None:intergenic
CCTGCCATTTCCATGCGGAC+CGG 0.561360 1_1:-10862874 None:intergenic
TCGTGTTTGGATTGGATCGG+TGG 0.566887 1_1:-10859229 None:intergenic
CCGATAAAGAGACTGAATCT+CGG 0.567122 1_1:+10860700 Msa0007580:CDS
TTTCTATGGTTGAGGCGGAA+AGG 0.568574 1_1:+10862339 Msa0007580:CDS
ATGCGTATGGAGAAGTTGAA+GGG 0.568960 1_1:+10860400 Msa0007580:five_prime_UTR
ATTTATCAGCCGAATATGGA+GGG 0.569886 1_1:+10863323 Msa0007580:intron
TTTGAGCCATTTAACTCGCA+AGG 0.572858 1_1:-10864637 None:intergenic
CCGGTCCGCATGGAAATGGC+AGG 0.574083 1_1:+10862874 Msa0007580:CDS
TATTCTTGATAGGCTAGAGA+GGG 0.576080 1_1:+10865036 Msa0007580:three_prime_UTR
AATTTCTTTCAGGTAACTTG+GGG 0.576412 1_1:+10862311 Msa0007580:intron
ACATATGTTGATTGGTCCGA+AGG 0.578375 1_1:+10863515 Msa0007580:CDS
TAGATTATTAGATTCTTCTG+AGG 0.578712 1_1:+10864998 Msa0007580:three_prime_UTR
ACGTTGGTGTTGTGTGTTTG+GGG 0.579176 1_1:-10859258 None:intergenic
CAGACAACAATACAAAATGT+TGG 0.582838 1_1:-10862397 None:intergenic
CGTTGGTGTTGTGTGTTTGG+GGG 0.584336 1_1:-10859257 None:intergenic
AAATGAAGAAAGCATTTGCA+TGG 0.584582 1_1:+10860436 Msa0007580:exon
TATCCATCAGCCTCAGCCGT+CGG 0.586020 1_1:-10864846 None:intergenic
AAGAATTTCTATGGTTGAGG+CGG 0.595575 1_1:+10862334 Msa0007580:CDS
ACATTATACAAGTGATGCAA+AGG 0.598519 1_1:+10864472 Msa0007580:CDS
AATTTATCAGCCGAATATGG+AGG 0.605235 1_1:+10863322 Msa0007580:intron
TATGTCGTATGTGCGAAAGA+TGG 0.605943 1_1:-10864805 None:intergenic
TCACGAGCCCTGAATGACCT+AGG 0.607827 1_1:-10863548 None:intergenic
GTATTCTTGATAGGCTAGAG+AGG 0.613057 1_1:+10865035 Msa0007580:three_prime_UTR
ATACCTATGAATTGAATGCA+GGG 0.613189 1_1:-10859316 None:intergenic
CTTGATAGGCTAGAGAGGGA+GGG 0.618521 1_1:+10865040 Msa0007580:three_prime_UTR
ACTAAAACGATAATCCAAGT+AGG 0.618618 1_1:-10860522 None:intergenic
GCTCATCAGAATAGCAGTTG+CGG 0.627810 1_1:-10863349 None:intergenic
TTAAACAAAGAACACGTCGA+GGG 0.629738 1_1:-10860600 None:intergenic
AATTCCCGAGTCTGTACGGG+TGG 0.635893 1_1:-10860675 None:intergenic
GTACTATGCTGTTCAAAGCA+CGG 0.641245 1_1:+10860746 Msa0007580:CDS
GAGAACGTTGATACCAGTGT+AGG 0.641386 1_1:-10859184 None:intergenic
TATGTGGATACCGGTCCGCA+TGG 0.642514 1_1:+10862864 Msa0007580:CDS
AGGCGGAATCGCAAATTGGT+CGG 0.649905 1_1:+10863490 Msa0007580:CDS
TAAACAAAGAACACGTCGAG+GGG 0.662055 1_1:-10860599 None:intergenic
ATGTGCGAAAGATGGTTCTG+GGG 0.665884 1_1:-10864797 None:intergenic
TGCGTATGGAGAAGTTGAAG+GGG 0.668554 1_1:+10860401 Msa0007580:five_prime_UTR
TGTCTCGTCCAACAAAATAG+GGG 0.669880 1_1:-10861149 None:intergenic
GTTTAGATGCTTGATCCAGG+CGG 0.670501 1_1:+10863473 Msa0007580:intron
TTATTTGGAGAAGTTCCCGA+CGG 0.684804 1_1:+10864830 Msa0007580:three_prime_UTR
AAACAAAGAACACGTCGAGG+GGG 0.699297 1_1:-10860598 None:intergenic
ACATACCTGCCATTTCCATG+CGG 0.707617 1_1:-10862879 None:intergenic
TACCCCATACCGGTTCACTG+TGG 0.707943 1_1:-10861173 None:intergenic
ACATGTCTTACAGAGAACAG+TGG 0.711790 1_1:+10864606 Msa0007580:intron
AGTTGTACACAAAATCAAAG+CGG 0.723003 1_1:-10862666 None:intergenic
GTTAAACAAAGAACACGTCG+AGG 0.732342 1_1:-10860601 None:intergenic
TGAAGAAACAATGTCAACGT+TGG 0.734229 1_1:-10859274 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAATATATCACAAATTA+TGG - chr1_1:10859664-10859683 None:intergenic 10.0%
!! ATAATAAGTTGTTAAAATAT+AGG + chr1_1:10860058-10860077 Msa0007580:intron 10.0%
!! TAATAAGTTGTTAAAATATA+GGG + chr1_1:10860059-10860078 Msa0007580:intron 10.0%
!! AACAATATAATAAATGAAAA+AGG - chr1_1:10860916-10860935 None:intergenic 10.0%
!! TATTTATACTAGATAAAAAT+TGG - chr1_1:10863706-10863725 None:intergenic 10.0%
!! TTACTATTACTATTAATTAA+TGG + chr1_1:10863883-10863902 Msa0007580:intron 10.0%
!!! ACTTTTTTACTTTTTCAATT+CGG + chr1_1:10859516-10859535 Msa0007580:intron 15.0%
!!! TTTTTGTTATTGTTAGAATT+GGG + chr1_1:10859594-10859613 Msa0007580:intron 15.0%
!! AATAAGTTGTTAAAATATAG+GGG + chr1_1:10860060-10860079 Msa0007580:intron 15.0%
!!! TATTTTACTATTAAGGATTA+AGG - chr1_1:10861896-10861915 None:intergenic 15.0%
!! AAATAAAAAAAAAAGCTATG+TGG + chr1_1:10862848-10862867 Msa0007580:intron 15.0%
!! AAAAGCAATATTATAGAATA+TGG - chr1_1:10864545-10864564 None:intergenic 15.0%
!! AACAAAATATATTGTAGAAT+AGG - chr1_1:10864958-10864977 None:intergenic 15.0%
!!! GTTTTTGTTATTGTTAGAAT+TGG + chr1_1:10859593-10859612 Msa0007580:intron 20.0%
!!! TTTTGTTATTGTTAGAATTG+GGG + chr1_1:10859595-10859614 Msa0007580:intron 20.0%
!! TTAACAACTTATTATCACTT+AGG - chr1_1:10860053-10860072 None:intergenic 20.0%
!! ATAGAAAGTGGTTAAATATA+GGG + chr1_1:10860091-10860110 Msa0007580:intron 20.0%
!!! CTCTTTATTATGTTTTTTGT+TGG + chr1_1:10860333-10860352 Msa0007580:intron 20.0%
!! AAAACATAAAAGCAACTTTA+GGG - chr1_1:10860773-10860792 None:intergenic 20.0%
!! AAAAACATAAAAGCAACTTT+AGG - chr1_1:10860774-10860793 None:intergenic 20.0%
!! CAAGTAAAGTTCAAATAAAT+AGG - chr1_1:10861053-10861072 None:intergenic 20.0%
!!! ATATATACTAGCTCTTTATA+TGG + chr1_1:10861211-10861230 Msa0007580:intron 20.0%
!! TTATCATTCTTAGCTTATAT+TGG - chr1_1:10861249-10861268 None:intergenic 20.0%
!!! CTTCAGCTTAATATTTTATT+AGG - chr1_1:10861624-10861643 None:intergenic 20.0%
!! CGACTTATTATTAATTATCA+TGG - chr1_1:10861720-10861739 None:intergenic 20.0%
!! TGATATTGATAAAAACTCAT+TGG + chr1_1:10862056-10862075 Msa0007580:intron 20.0%
!!! TTATTCATCTAATTTGTAGA+AGG - chr1_1:10862742-10862761 None:intergenic 20.0%
!! GCTTGAATTTATTAAAATAG+AGG - chr1_1:10863140-10863159 None:intergenic 20.0%
!! TAAACTCATGAAAAAAATAG+CGG + chr1_1:10863580-10863599 Msa0007580:CDS 20.0%
!!! ATTACGTTCAAAAGTATAAT+TGG + chr1_1:10863784-10863803 Msa0007580:intron 20.0%
!!! TTTTTCAATATACCATTGTA+TGG - chr1_1:10864172-10864191 None:intergenic 20.0%
!!! GTTTTGAAACAAAAACAAAA+TGG + chr1_1:10864228-10864247 Msa0007580:intron 20.0%
!! TGGTAAAACAAACAAATATA+TGG + chr1_1:10864248-10864267 Msa0007580:intron 20.0%
!! AAAAATATGCACTAAAAAAG+AGG - chr1_1:10864341-10864360 None:intergenic 20.0%
!! TGGAATATTGTAAATTAACA+AGG - chr1_1:10864382-10864401 None:intergenic 20.0%
!! AATATTATAGAATATGGAAG+AGG - chr1_1:10864539-10864558 None:intergenic 20.0%
!! ATAAATACTTCTTCATTCTT+TGG + chr1_1:10864755-10864774 Msa0007580:three_prime_UTR 20.0%
!! TTCATTTTCGAATACTTATG+TGG + chr1_1:10859364-10859383 Msa0007580:intron 25.0%
! GCAAATTGTTATATACAATC+AGG + chr1_1:10859795-10859814 Msa0007580:intron 25.0%
! ATTAATTATTGTTTCAGTCG+TGG + chr1_1:10859834-10859853 Msa0007580:intron 25.0%
! ATAGCAAGTGGTTAAATATA+TGG + chr1_1:10859993-10860012 Msa0007580:intron 25.0%
!!! TTAACAACTTGCTATGAATT+TGG - chr1_1:10860020-10860039 None:intergenic 25.0%
! GATAGAAAGTGGTTAAATAT+AGG + chr1_1:10860090-10860109 Msa0007580:intron 25.0%
! TAGAAAGTGGTTAAATATAG+GGG + chr1_1:10860092-10860111 Msa0007580:intron 25.0%
!!! AGAAGATTTTTTGTGAATTG+TGG - chr1_1:10860462-10860481 None:intergenic 25.0%
! ACGTCTTCTTTCAAAATAAT+AGG + chr1_1:10860885-10860904 Msa0007580:intron 25.0%
!!! TTACCAAGTGCTATTTTTTT+TGG + chr1_1:10861000-10861019 Msa0007580:intron 25.0%
! AAACCAAAAAAAATAGCACT+TGG - chr1_1:10861006-10861025 None:intergenic 25.0%
! TTTACTTGTAAAACTAATGC+AGG + chr1_1:10861065-10861084 Msa0007580:intron 25.0%
! TTACTTGTAAAACTAATGCA+GGG + chr1_1:10861066-10861085 Msa0007580:intron 25.0%
! TATCAAATGATCGAAATTTG+AGG + chr1_1:10861319-10861338 Msa0007580:intron 25.0%
! AATCAATTATGACAAAAGAC+GGG - chr1_1:10861690-10861709 None:intergenic 25.0%
! CAATCAATTATGACAAAAGA+CGG - chr1_1:10861691-10861710 None:intergenic 25.0%
!! AGTATGAATGCAATTGTTTT+CGG - chr1_1:10861767-10861786 None:intergenic 25.0%
!! ATACAAAATGTTGGTTATCA+GGG - chr1_1:10862391-10862410 None:intergenic 25.0%
!! AATACAAAATGTTGGTTATC+AGG - chr1_1:10862392-10862411 None:intergenic 25.0%
!! ATTTTGTATTGTTGTCTGAT+AGG + chr1_1:10862402-10862421 Msa0007580:CDS 25.0%
! TTTGTTCCATTGCTAAAATT+TGG + chr1_1:10862444-10862463 Msa0007580:intron 25.0%
!!! CTAAAATTTGGTTGGTTTTT+GGG + chr1_1:10862456-10862475 Msa0007580:intron 25.0%
! TTTGTTCCATTGCTAAAATT+TGG + chr1_1:10862444-10862463 Msa0007580:intron 25.0%
!!! CTAAAATTTGGTTGGTTTTT+GGG + chr1_1:10862456-10862475 Msa0007580:intron 25.0%
! AAAAGGAACATACAATTGAA+CGG - chr1_1:10862623-10862642 None:intergenic 25.0%
! TATGTAGAATCTTCAATGAA+AGG - chr1_1:10862781-10862800 None:intergenic 25.0%
! TATAACCGACAATAATAACT+TGG - chr1_1:10863215-10863234 None:intergenic 25.0%
!! TTGTTACAAAAAGCATAGAA+AGG - chr1_1:10863278-10863297 None:intergenic 25.0%
! TTAAATTTATCAGCCGAATA+TGG + chr1_1:10863319-10863338 Msa0007580:intron 25.0%
! CACTTATAAAGAGAAAAGAT+TGG - chr1_1:10863407-10863426 None:intergenic 25.0%
! TTTCTCTTTATAAGTGATAC+AGG + chr1_1:10863411-10863430 Msa0007580:intron 25.0%
! TTCTCTTTATAAGTGATACA+GGG + chr1_1:10863412-10863431 Msa0007580:intron 25.0%
! TATCTAGTATAAATATCACC+AGG + chr1_1:10863711-10863730 Msa0007580:intron 25.0%
!! GATTTTCATCAAGATTGTTA+TGG - chr1_1:10863753-10863772 None:intergenic 25.0%
!!! AGATCTCAATTTTTAGATCA+CGG - chr1_1:10864132-10864151 None:intergenic 25.0%
! ATTCTAACAATTCCATACAA+TGG + chr1_1:10864157-10864176 Msa0007580:intron 25.0%
! AACAACAAATTCAGTTATCT+AGG + chr1_1:10864298-10864317 Msa0007580:intron 25.0%
! ACAACAAATTCAGTTATCTA+GGG + chr1_1:10864299-10864318 Msa0007580:intron 25.0%
! AATTAACAAGGTAAAGACAA+GGG - chr1_1:10864370-10864389 None:intergenic 25.0%
! AAATTAACAAGGTAAAGACA+AGG - chr1_1:10864371-10864390 None:intergenic 25.0%
! ATCAATTTATCTTGAGTTTC+CGG - chr1_1:10864697-10864716 None:intergenic 25.0%
!!! TAGATCAAATTTTGATTTCC+TGG + chr1_1:10864881-10864900 Msa0007580:three_prime_UTR 25.0%
!!! AGATCAAATTTTGATTTCCT+GGG + chr1_1:10864882-10864901 Msa0007580:three_prime_UTR 25.0%
! TAGATTATTAGATTCTTCTG+AGG + chr1_1:10864998-10865017 Msa0007580:three_prime_UTR 25.0%
! AGATTATTAGATTCTTCTGA+GGG + chr1_1:10864999-10865018 Msa0007580:three_prime_UTR 25.0%
!!! AAAGTTTTGGTATTCTTGAT+AGG + chr1_1:10865026-10865045 Msa0007580:three_prime_UTR 25.0%
!!! GTTTATTTTTATACAAGTGC+TGG + chr1_1:10865225-10865244 Msa0007580:three_prime_UTR 25.0%
! TTTAGATTTGAAACGCCAAT+TGG - chr1_1:10859209-10859228 None:intergenic 30.0%
! TTGACATTGTTTCTTCATCA+GGG + chr1_1:10859280-10859299 Msa0007580:five_prime_UTR 30.0%
ATACCTATGAATTGAATGCA+GGG - chr1_1:10859319-10859338 None:intergenic 30.0%
AATACCTATGAATTGAATGC+AGG - chr1_1:10859320-10859339 None:intergenic 30.0%
! TATGATTTGTGTGGTATGTT+TGG + chr1_1:10859725-10859744 Msa0007580:intron 30.0%
! TATGTTTGGATTGAGGTTTT+AGG + chr1_1:10859739-10859758 Msa0007580:intron 30.0%
TGACTAAAATGCAACAAAGT+CGG - chr1_1:10859936-10859955 None:intergenic 30.0%
TTTGCAAGTTTAATAGAGTG+AGG + chr1_1:10860119-10860138 Msa0007580:intron 30.0%
TTGCAAGTTTAATAGAGTGA+GGG + chr1_1:10860120-10860139 Msa0007580:intron 30.0%
! GTTTTGCATACTTGAAAACA+TGG + chr1_1:10860214-10860233 Msa0007580:intron 30.0%
!! CTCTAGAGTATATTGGTTAT+TGG + chr1_1:10860274-10860293 Msa0007580:intron 30.0%
! GCTTTCTTCATTTAAGTTCA+AGG - chr1_1:10860429-10860448 None:intergenic 30.0%
!! AAATGAAGAAAGCATTTGCA+TGG + chr1_1:10860436-10860455 Msa0007580:exon 30.0%
CACAAAAAATCTTCTGATCA+TGG + chr1_1:10860467-10860486 Msa0007580:CDS 30.0%
AAAAATCTTCTGATCATGGT+TGG + chr1_1:10860471-10860490 Msa0007580:CDS 30.0%
ACTAAAACGATAATCCAAGT+AGG - chr1_1:10860525-10860544 None:intergenic 30.0%
! TGTTCTTTGTTTAACTCTCA+AGG + chr1_1:10860609-10860628 Msa0007580:CDS 30.0%
!! TGCTTTTATGTTTTTGACTC+CGG + chr1_1:10860779-10860798 Msa0007580:CDS 30.0%
! AGACAGAAAATTTTCCTTCA+TGG - chr1_1:10861092-10861111 None:intergenic 30.0%
GCTAAGAATGATAAAGAATG+TGG + chr1_1:10861255-10861274 Msa0007580:intron 30.0%
!! CATTCATTTTCCAAAGTGTT+GGG - chr1_1:10861379-10861398 None:intergenic 30.0%
! TCATTCATTTTCCAAAGTGT+TGG - chr1_1:10861380-10861399 None:intergenic 30.0%
GATGCTTATTACTTGTAACT+GGG - chr1_1:10861474-10861493 None:intergenic 30.0%
TGATGCTTATTACTTGTAAC+TGG - chr1_1:10861475-10861494 None:intergenic 30.0%
CAACTAAATCCAAAGAAACA+GGG - chr1_1:10861559-10861578 None:intergenic 30.0%
!!! GGTTTGCTGCATTTTATTTT+TGG + chr1_1:10861923-10861942 Msa0007580:intron 30.0%
TAGTGACAATTTCATAGCTA+TGG + chr1_1:10861957-10861976 Msa0007580:intron 30.0%
ATTTGAGTGGATACATTACA+TGG - chr1_1:10862117-10862136 None:intergenic 30.0%
! GTTCCTTAAAATTTTGCCAT+TGG + chr1_1:10862147-10862166 Msa0007580:intron 30.0%
! TCTCCAATGGCAAAATTTTA+AGG - chr1_1:10862153-10862172 None:intergenic 30.0%
!!! ATGCGTGATTTTTTGAATAG+TGG - chr1_1:10862258-10862277 None:intergenic 30.0%
GAAAGAAATTGAAAACCAGT+TGG - chr1_1:10862301-10862320 None:intergenic 30.0%
!!! ACTGGTTTTCAATTTCTTTC+AGG + chr1_1:10862301-10862320 Msa0007580:intron 30.0%
! TCAATTTCTTTCAGGTAACT+TGG + chr1_1:10862309-10862328 Msa0007580:intron 30.0%
! CAATTTCTTTCAGGTAACTT+GGG + chr1_1:10862310-10862329 Msa0007580:intron 30.0%
! AATTTCTTTCAGGTAACTTG+GGG + chr1_1:10862311-10862330 Msa0007580:intron 30.0%
CAGACAACAATACAAAATGT+TGG - chr1_1:10862400-10862419 None:intergenic 30.0%
TTCCATTGCTAAAATTTGGT+TGG + chr1_1:10862448-10862467 Msa0007580:intron 30.0%
!! AACCAACCAAATTTTAGCAA+TGG - chr1_1:10862453-10862472 None:intergenic 30.0%
!!! GCTAAAATTTGGTTGGTTTT+TGG + chr1_1:10862455-10862474 Msa0007580:intron 30.0%
GAAAGGAACATACAATTGAA+CGG - chr1_1:10862489-10862508 None:intergenic 30.0%
AGTTGTACACAAAATCAAAG+CGG - chr1_1:10862535-10862554 None:intergenic 30.0%
TTCCATTGCTAAAATTTGGT+TGG + chr1_1:10862448-10862467 Msa0007580:intron 30.0%
!! AACCAACCAAATTTTAGCAA+TGG - chr1_1:10862453-10862472 None:intergenic 30.0%
!!! GCTAAAATTTGGTTGGTTTT+TGG + chr1_1:10862455-10862474 Msa0007580:intron 30.0%
AGTTGTACACAAAATCAAAG+CGG - chr1_1:10862535-10862554 None:intergenic 30.0%
GATTCTACATATCTGTTACA+TGG + chr1_1:10862790-10862809 Msa0007580:intron 30.0%
AAAAAAAGCTATGTGGATAC+CGG + chr1_1:10862855-10862874 Msa0007580:intron 30.0%
! AAATCCTTCTTTTCTACTTC+AGG - chr1_1:10862918-10862937 None:intergenic 30.0%
! AGAAAAGAAGGATTTTCGAA+AGG + chr1_1:10862923-10862942 Msa0007580:CDS 30.0%
! GAAAAGAAGGATTTTCGAAA+GGG + chr1_1:10862924-10862943 Msa0007580:CDS 30.0%
TAACCTCAATGAATGGTTTA+TGG - chr1_1:10862976-10862995 None:intergenic 30.0%
CAAATCTTAACCTCAATGAA+TGG - chr1_1:10862983-10863002 None:intergenic 30.0%
CATTCATTGAGGTTAAGATT+TGG + chr1_1:10862981-10863000 Msa0007580:intron 30.0%
!! TCTTCTTGTTTCTAATACAG+TGG + chr1_1:10863070-10863089 Msa0007580:intron 30.0%
ATAAATTCAAGCATCATTGC+AGG + chr1_1:10863148-10863167 Msa0007580:intron 30.0%
TAAATTCAAGCATCATTGCA+GGG + chr1_1:10863149-10863168 Msa0007580:intron 30.0%
GGTTATAGCATCACAAATAA+TGG + chr1_1:10863228-10863247 Msa0007580:intron 30.0%
GCACTTACATTAAAAAAGGT+TGG - chr1_1:10863383-10863402 None:intergenic 30.0%
TGGTGCACTTACATTAAAAA+AGG - chr1_1:10863387-10863406 None:intergenic 30.0%
AGAGTGCAAAAACATTTGAA+GGG - chr1_1:10863630-10863649 None:intergenic 30.0%
! AAGAGTGCAAAAACATTTGA+AGG - chr1_1:10863631-10863650 None:intergenic 30.0%
GCTAAAGACAAATTCTTTGA+TGG - chr1_1:10863663-10863682 None:intergenic 30.0%
! ATAAAAATTGGCTCTCTGAA+AGG - chr1_1:10863694-10863713 None:intergenic 30.0%
ACTAACTAACTAAGCTTACA+AGG - chr1_1:10863953-10863972 None:intergenic 30.0%
TCCTTATATATAGACCAACA+AGG - chr1_1:10864034-10864053 None:intergenic 30.0%
!!! TTTTTTCTGTTACAAGAGAG+AGG - chr1_1:10864064-10864083 None:intergenic 30.0%
!! GATCTCAATTTTTAGATCAC+GGG - chr1_1:10864131-10864150 None:intergenic 30.0%
!! GTTTTTGTTTCAAAACTACG+AGG - chr1_1:10864224-10864243 None:intergenic 30.0%
CAACAAATTCAGTTATCTAG+GGG + chr1_1:10864300-10864319 Msa0007580:intron 30.0%
TTTGAAGATAAAAGCTGTAC+TGG - chr1_1:10864402-10864421 None:intergenic 30.0%
TTTGCATCACTTGTATAATG+TGG - chr1_1:10864473-10864492 None:intergenic 30.0%
ACATTATACAAGTGATGCAA+AGG + chr1_1:10864472-10864491 Msa0007580:CDS 30.0%
!! TATTTCACTTCCTCTAGTTT+TGG + chr1_1:10864504-10864523 Msa0007580:intron 30.0%
ATCATAAGCATTCTTTCAAC+AGG - chr1_1:10864571-10864590 None:intergenic 30.0%
ATGTAGTTGAATTCGAGAAA+AGG - chr1_1:10864723-10864742 None:intergenic 30.0%
!!! GATCAAATTTTGATTTCCTG+GGG + chr1_1:10864883-10864902 Msa0007580:three_prime_UTR 30.0%
TTGCGTTTGCGTTTGTATTT+GGG - chr1_1:10859102-10859121 None:intergenic 35.0%
TTTGCGTTTGCGTTTGTATT+TGG - chr1_1:10859103-10859122 None:intergenic 35.0%
ATGTTGAAAAACACCTACAC+TGG + chr1_1:10859171-10859190 Msa0007580:five_prime_UTR 35.0%
TGAAGAAACAATGTCAACGT+TGG - chr1_1:10859277-10859296 None:intergenic 35.0%
! GTTGACATTGTTTCTTCATC+AGG + chr1_1:10859279-10859298 Msa0007580:five_prime_UTR 35.0%
ATAGATCTCTGTTCTGTTCA+TGG + chr1_1:10859425-10859444 Msa0007580:intron 35.0%
! TACATCGCTTATGATTTGTG+TGG + chr1_1:10859716-10859735 Msa0007580:intron 35.0%
!!! TTTGGATTGAGGTTTTAGGA+AGG + chr1_1:10859743-10859762 Msa0007580:intron 35.0%
!!! TTGGATTGAGGTTTTAGGAA+GGG + chr1_1:10859744-10859763 Msa0007580:intron 35.0%
TTGCTATCAATTCAGTCTCT+AGG - chr1_1:10859980-10859999 None:intergenic 35.0%
!! AAATTAGTCCCTGACTTGTT+AGG - chr1_1:10860162-10860181 None:intergenic 35.0%
TAACAAGTCAGGGACTAATT+TGG + chr1_1:10860161-10860180 Msa0007580:intron 35.0%
!! CCAATATACTCTAGAGTAGA+TGG - chr1_1:10860270-10860289 None:intergenic 35.0%
!! CCATCTACTCTAGAGTATAT+TGG + chr1_1:10860267-10860286 Msa0007580:intron 35.0%
!!! ATGTTTTTTGTTGGTGAGAC+AGG + chr1_1:10860342-10860361 Msa0007580:intron 35.0%
!!! TGTTTTTTGTTGGTGAGACA+GGG + chr1_1:10860343-10860362 Msa0007580:intron 35.0%
TGATAGATTACAGATGCGTA+TGG + chr1_1:10860387-10860406 Msa0007580:five_prime_UTR 35.0%
GACACAGATCAAACTTAAAG+AGG + chr1_1:10860499-10860518 Msa0007580:CDS 35.0%
TTAAACAAAGAACACGTCGA+GGG - chr1_1:10860603-10860622 None:intergenic 35.0%
!! GCTTTTATGTTTTTGACTCC+GGG + chr1_1:10860780-10860799 Msa0007580:CDS 35.0%
TTCTCAAAAGGTAATGATCC+CGG - chr1_1:10860801-10860820 None:intergenic 35.0%
GAATAGGAATGTCATATACC+TGG - chr1_1:10860842-10860861 None:intergenic 35.0%
! AAATCTAAGAGTGTGGTCTA+TGG - chr1_1:10860864-10860883 None:intergenic 35.0%
!! GACAAGCATTGATATGAATG+AGG - chr1_1:10860967-10860986 None:intergenic 35.0%
TGTCTATGTACATGCATCAA+AGG + chr1_1:10861107-10861126 Msa0007580:CDS 35.0%
ATGTCTCGTCCAACAAAATA+GGG - chr1_1:10861153-10861172 None:intergenic 35.0%
TTTGTTAACACCCAACACTT+TGG + chr1_1:10861366-10861385 Msa0007580:intron 35.0%
GGAAAATGAATGACTGTGTA+AGG + chr1_1:10861387-10861406 Msa0007580:intron 35.0%
AAATGAATGACTGTGTAAGG+CGG + chr1_1:10861390-10861409 Msa0007580:intron 35.0%
!!! GGTTTTAATTTAATTCGCGC+AGG - chr1_1:10861521-10861540 None:intergenic 35.0%
! CAGAAATTTCCCTGTTTCTT+TGG + chr1_1:10861547-10861566 Msa0007580:intron 35.0%
CCAACTAAATCCAAAGAAAC+AGG - chr1_1:10861560-10861579 None:intergenic 35.0%
! CCTGTTTCTTTGGATTTAGT+TGG + chr1_1:10861557-10861576 Msa0007580:intron 35.0%
AAAGTTCATCTAATCACGCA+AGG + chr1_1:10861647-10861666 Msa0007580:intron 35.0%
ATCTCGAATGGTGTTTCTTA+GGG + chr1_1:10861868-10861887 Msa0007580:intron 35.0%
AACGCATTTCAGTATTTGAG+TGG - chr1_1:10862130-10862149 None:intergenic 35.0%
AACTTGGGGAAGAATTTCTA+TGG + chr1_1:10862325-10862344 Msa0007580:CDS 35.0%
AAGAATTTCTATGGTTGAGG+CGG + chr1_1:10862334-10862353 Msa0007580:CDS 35.0%
CAACCATAAACCATTCATTG+AGG + chr1_1:10862970-10862989 Msa0007580:intron 35.0%
CATGTCAGAAAAACTACCAT+TGG - chr1_1:10863037-10863056 None:intergenic 35.0%
GCTGACCAAGTTATTATTGT+CGG + chr1_1:10863207-10863226 Msa0007580:intron 35.0%
AATTTATCAGCCGAATATGG+AGG + chr1_1:10863322-10863341 Msa0007580:intron 35.0%
ATTTATCAGCCGAATATGGA+GGG + chr1_1:10863323-10863342 Msa0007580:intron 35.0%
TATGTTTAGATGCTTGATCC+AGG + chr1_1:10863470-10863489 Msa0007580:intron 35.0%
CTAAGCTTACAAGGATAACT+AGG - chr1_1:10863944-10863963 None:intergenic 35.0%
! GCCTTGTTGGTCTATATATA+AGG + chr1_1:10864030-10864049 Msa0007580:intron 35.0%
TATGCACTAAAAAAGAGGTC+CGG - chr1_1:10864336-10864355 None:intergenic 35.0%
!!! TTCCTCTAGTTTTGGTTCTA+AGG + chr1_1:10864512-10864531 Msa0007580:intron 35.0%
! GATCTTGTTATCTATTTGCC+CGG + chr1_1:10864662-10864681 Msa0007580:CDS 35.0%
TTTGGTGAATCAACACCATA+TGG + chr1_1:10864773-10864792 Msa0007580:three_prime_UTR 35.0%
CACATACGACATAGCTTATT+TGG + chr1_1:10864815-10864834 Msa0007580:three_prime_UTR 35.0%
GCTTGTCTGGTTAGATAATA+TGG + chr1_1:10864928-10864947 Msa0007580:three_prime_UTR 35.0%
!! TTCTGAGGGTTGAAAAGTTT+TGG + chr1_1:10865013-10865032 Msa0007580:three_prime_UTR 35.0%
TATTCTTGATAGGCTAGAGA+GGG + chr1_1:10865036-10865055 Msa0007580:three_prime_UTR 35.0%
! AGATAATTGCTTTGAGCGTA+TGG + chr1_1:10865197-10865216 Msa0007580:three_prime_UTR 35.0%
TGGTATCAACGTTCTCCAAT+TGG + chr1_1:10859191-10859210 Msa0007580:five_prime_UTR 40.0%
!! AACGTTGGTGTTGTGTGTTT+GGG - chr1_1:10859262-10859281 None:intergenic 40.0%
GATCCCTGCATTCAATTCAT+AGG + chr1_1:10859313-10859332 Msa0007580:five_prime_UTR 40.0%
TCGGAAATTGCAAGCTGATT+AGG + chr1_1:10859535-10859554 Msa0007580:intron 40.0%
TGTGTGGTATGTTTGGATTG+AGG + chr1_1:10859732-10859751 Msa0007580:intron 40.0%
ATATCGTCGATCTAGTTGAG+TGG - chr1_1:10859892-10859911 None:intergenic 40.0%
! GAGACTGAATTGATAGCAAG+TGG + chr1_1:10859981-10860000 Msa0007580:intron 40.0%
ATGCGTATGGAGAAGTTGAA+GGG + chr1_1:10860400-10860419 Msa0007580:five_prime_UTR 40.0%
CAAACTTAAAGAGGCCTACT+TGG + chr1_1:10860508-10860527 Msa0007580:CDS 40.0%
TAAACAAAGAACACGTCGAG+GGG - chr1_1:10860602-10860621 None:intergenic 40.0%
GTTAAACAAAGAACACGTCG+AGG - chr1_1:10860604-10860623 None:intergenic 40.0%
TCTCAAGGTTGTAGTGTTGT+TGG + chr1_1:10860624-10860643 Msa0007580:CDS 40.0%
CCGAGATTCAGTCTCTTTAT+CGG - chr1_1:10860703-10860722 None:intergenic 40.0%
CCGATAAAGAGACTGAATCT+CGG + chr1_1:10860700-10860719 Msa0007580:CDS 40.0%
CGATAAAGAGACTGAATCTC+GGG + chr1_1:10860701-10860720 Msa0007580:CDS 40.0%
GTACTATGCTGTTCAAAGCA+CGG + chr1_1:10860746-10860765 Msa0007580:CDS 40.0%
!! CATTACCTTTTGAGAAGCTC+TGG + chr1_1:10860805-10860824 Msa0007580:CDS 40.0%
! AAGAGTGTGGTCTATGGAAT+AGG - chr1_1:10860858-10860877 None:intergenic 40.0%
AGACGTGAAATCTAAGAGTG+TGG - chr1_1:10860871-10860890 None:intergenic 40.0%
AAATAGGGGCTGACATGTAT+CGG - chr1_1:10861138-10861157 None:intergenic 40.0%
TGTCTCGTCCAACAAAATAG+GGG - chr1_1:10861152-10861171 None:intergenic 40.0%
GATGTCTCGTCCAACAAAAT+AGG - chr1_1:10861154-10861173 None:intergenic 40.0%
ACAGGGAAATTTCTGCTCAA+AGG - chr1_1:10861542-10861561 None:intergenic 40.0%
TAGTTGGAACTCGTTGAACT+AGG + chr1_1:10861573-10861592 Msa0007580:intron 40.0%
!! GCTTTGAAGAACATCTCGAA+TGG + chr1_1:10861856-10861875 Msa0007580:intron 40.0%
CATCTCGAATGGTGTTTCTT+AGG + chr1_1:10861867-10861886 Msa0007580:intron 40.0%
GGGAAGAATTTCTATGGTTG+AGG + chr1_1:10862331-10862350 Msa0007580:CDS 40.0%
GGTATACAGCTGAAGCAAAA+AGG - chr1_1:10862640-10862659 None:intergenic 40.0%
!! CAAGTGTCAGCTTTATTGAC+AGG + chr1_1:10862701-10862720 Msa0007580:CDS 40.0%
GTTGCCTGAAGTAGAAAAGA+AGG + chr1_1:10862911-10862930 Msa0007580:CDS 40.0%
TACAGTGGTTCTCGATGAAA+CGG + chr1_1:10863085-10863104 Msa0007580:intron 40.0%
ATACGCCAAACAAGTTAGCA+GGG - chr1_1:10863453-10863472 None:intergenic 40.0%
! ACATATGTTGATTGGTCCGA+AGG + chr1_1:10863515-10863534 Msa0007580:CDS 40.0%
! TTGATTGGTCCGAAGGAAAA+TGG + chr1_1:10863522-10863541 Msa0007580:CDS 40.0%
GGTAGAATGTTTAGACTTCC+TGG - chr1_1:10863732-10863751 None:intergenic 40.0%
GCTTACAAGGATAACTAGGA+AGG - chr1_1:10863940-10863959 None:intergenic 40.0%
AAACTCAGCAAGACTAACTG+AGG - chr1_1:10863992-10864011 None:intergenic 40.0%
GACCTTAGAACCAAAACTAG+AGG - chr1_1:10864517-10864536 None:intergenic 40.0%
ACATGTCTTACAGAGAACAG+TGG + chr1_1:10864606-10864625 Msa0007580:intron 40.0%
ATTGCACCTTGCGAGTTAAA+TGG + chr1_1:10864631-10864650 Msa0007580:CDS 40.0%
TTTGAGCCATTTAACTCGCA+AGG - chr1_1:10864640-10864659 None:intergenic 40.0%
!! ATTTGCCCGGAAGTTTTATC+CGG + chr1_1:10864675-10864694 Msa0007580:CDS 40.0%
AGTTTCCGGATAAAACTTCC+GGG - chr1_1:10864683-10864702 None:intergenic 40.0%
GAGTTTCCGGATAAAACTTC+CGG - chr1_1:10864684-10864703 None:intergenic 40.0%
TATGTGCGAAAGATGGTTCT+GGG - chr1_1:10864801-10864820 None:intergenic 40.0%
TATGTCGTATGTGCGAAAGA+TGG - chr1_1:10864808-10864827 None:intergenic 40.0%
TTATTTGGAGAAGTTCCCGA+CGG + chr1_1:10864830-10864849 Msa0007580:three_prime_UTR 40.0%
GTATTCTTGATAGGCTAGAG+AGG + chr1_1:10865035-10865054 Msa0007580:three_prime_UTR 40.0%
! GTTGCTGTGCTACTAAGTTC+AGG - chr1_1:10859046-10859065 None:intergenic 45.0%
GAGAACGTTGATACCAGTGT+AGG - chr1_1:10859187-10859206 None:intergenic 45.0%
! GTGTCGTGTTTGGATTGGAT+CGG - chr1_1:10859235-10859254 None:intergenic 45.0%
!! ACGTTGGTGTTGTGTGTTTG+GGG - chr1_1:10859261-10859280 None:intergenic 45.0%
!! CAACGTTGGTGTTGTGTGTT+TGG - chr1_1:10859263-10859282 None:intergenic 45.0%
!! GTCTCTAGGATACTCTCAGA+AGG - chr1_1:10859966-10859985 None:intergenic 45.0%
TGAGAGCTACCTAACAAGTC+AGG + chr1_1:10860150-10860169 Msa0007580:intron 45.0%
GAGAGCTACCTAACAAGTCA+GGG + chr1_1:10860151-10860170 Msa0007580:intron 45.0%
CAAGTCAGGGACTAATTTGG+TGG + chr1_1:10860164-10860183 Msa0007580:intron 45.0%
GATGCGTATGGAGAAGTTGA+AGG + chr1_1:10860399-10860418 Msa0007580:five_prime_UTR 45.0%
TGCGTATGGAGAAGTTGAAG+GGG + chr1_1:10860401-10860420 Msa0007580:five_prime_UTR 45.0%
AAACAAAGAACACGTCGAGG+GGG - chr1_1:10860601-10860620 None:intergenic 45.0%
! CAAGGTTGTAGTGTTGTTGG+TGG + chr1_1:10860627-10860646 Msa0007580:CDS 45.0%
GTATGCCAGAGCTTCTCAAA+AGG - chr1_1:10860813-10860832 None:intergenic 45.0%
AAACTAATGCAGGGCCATGA+AGG + chr1_1:10861075-10861094 Msa0007580:intron 45.0%
! CATGTCAGCCCCTATTTTGT+TGG + chr1_1:10861141-10861160 Msa0007580:CDS 45.0%
TGATGAGCTATACCCCATAC+CGG - chr1_1:10861186-10861205 None:intergenic 45.0%
! ATCTAATCACGCAAGGCACT+AGG + chr1_1:10861654-10861673 Msa0007580:intron 45.0%
! TCTAATCACGCAAGGCACTA+GGG + chr1_1:10861655-10861674 Msa0007580:intron 45.0%
AACTTCTGCAGCATCTCCAA+TGG - chr1_1:10862166-10862185 None:intergenic 45.0%
TCTTAGTAGCTAGTGCCAAC+TGG + chr1_1:10862283-10862302 Msa0007580:intron 45.0%
TTTCTATGGTTGAGGCGGAA+AGG + chr1_1:10862339-10862358 Msa0007580:CDS 45.0%
GGTATACAGCTGAAGCAGAA+AGG - chr1_1:10862506-10862525 None:intergenic 45.0%
ACAAAATCAAAGCGGCTCAC+TGG - chr1_1:10862527-10862546 None:intergenic 45.0%
! ACATACCTGCCATTTCCATG+CGG - chr1_1:10862882-10862901 None:intergenic 45.0%
! GGATTTTCGAAAGGGTTCAC+AGG + chr1_1:10862932-10862951 Msa0007580:CDS 45.0%
GCAGCACGCTCTAATAGTTA+TGG + chr1_1:10863107-10863126 Msa0007580:intron 45.0%
TTGCGGTTTCCCTCCATATT+CGG - chr1_1:10863335-10863354 None:intergenic 45.0%
GCTCATCAGAATAGCAGTTG+CGG - chr1_1:10863352-10863371 None:intergenic 45.0%
!! TCTCTCCCTGCTAACTTGTT+TGG + chr1_1:10863445-10863464 Msa0007580:intron 45.0%
CATACGCCAAACAAGTTAGC+AGG - chr1_1:10863454-10863473 None:intergenic 45.0%
GTTTAGATGCTTGATCCAGG+CGG + chr1_1:10863473-10863492 Msa0007580:intron 45.0%
GGTCGGTGACATATGTTGAT+TGG + chr1_1:10863507-10863526 Msa0007580:CDS 45.0%
!!! CCTAGGATGCCATTTTCCTT+CGG - chr1_1:10863534-10863553 None:intergenic 45.0%
AATGGCATCCTAGGTCATTC+AGG + chr1_1:10863540-10863559 Msa0007580:CDS 45.0%
ATGGCATCCTAGGTCATTCA+GGG + chr1_1:10863541-10863560 Msa0007580:CDS 45.0%
ACAAGGCTAACTAACTACGC+TGG - chr1_1:10864017-10864036 None:intergenic 45.0%
!! GCGTAGTTAGTTAGCCTTGT+TGG + chr1_1:10864017-10864036 Msa0007580:intron 45.0%
AGATCACGGGATCATGAAGT+TGG - chr1_1:10864118-10864137 None:intergenic 45.0%
AAAAAAGAGGTCCGGCTAAC+AGG - chr1_1:10864328-10864347 None:intergenic 45.0%
! ATGTGCGAAAGATGGTTCTG+GGG - chr1_1:10864800-10864819 None:intergenic 45.0%
GTATGTGCGAAAGATGGTTC+TGG - chr1_1:10864802-10864821 None:intergenic 45.0%
TTTCCTGGGGCTTGATGAAA+TGG + chr1_1:10864896-10864915 Msa0007580:three_prime_UTR 45.0%
ATGGAACTTCTGAGCTTGTC+TGG + chr1_1:10864915-10864934 Msa0007580:three_prime_UTR 45.0%
!!! AAAATTATATTTTACTATTA+AGG - chr1_1:10861903-10861922 None:intergenic 5.0%
!!! TTAATAGTAAAATATAATTT+TGG + chr1_1:10861902-10861921 Msa0007580:intron 5.0%
!! ACATAAAAATAAATAAATAA+AGG + chr1_1:10862211-10862230 Msa0007580:intron 5.0%
! TCGTGTTTGGATTGGATCGG+TGG - chr1_1:10859232-10859251 None:intergenic 50.0%
!! CGTTGGTGTTGTGTGTTTGG+GGG - chr1_1:10859260-10859279 None:intergenic 50.0%
GGGGCGTAATCGATAGAAAG+TGG + chr1_1:10860079-10860098 Msa0007580:intron 50.0%
GTGAATTCCCGAGTCTGTAC+GGG - chr1_1:10860681-10860700 None:intergenic 50.0%
GGTGAATTCCCGAGTCTGTA+CGG - chr1_1:10860682-10860701 None:intergenic 50.0%
GCTCTGGCATACATTCTTCC+AGG + chr1_1:10860821-10860840 Msa0007580:CDS 50.0%
ACGAGACATCCACAGTGAAC+CGG + chr1_1:10861164-10861183 Msa0007580:CDS 50.0%
ACATCCACAGTGAACCGGTA+TGG + chr1_1:10861169-10861188 Msa0007580:intron 50.0%
CATCCACAGTGAACCGGTAT+GGG + chr1_1:10861170-10861189 Msa0007580:intron 50.0%
ATCCACAGTGAACCGGTATG+GGG + chr1_1:10861171-10861190 Msa0007580:intron 50.0%
! TGAGGCGGAAAGGAGACTTT+TGG + chr1_1:10862349-10862368 Msa0007580:CDS 50.0%
ACAAAATCAAAGCGGCGCAC+TGG - chr1_1:10862661-10862680 None:intergenic 50.0%
AGTTAGCAGGGAGAGAGAGA+TGG - chr1_1:10863441-10863460 None:intergenic 50.0%
ATCCAGGCGGAATCGCAAAT+TGG + chr1_1:10863486-10863505 Msa0007580:CDS 50.0%
AGGCGGAATCGCAAATTGGT+CGG + chr1_1:10863490-10863509 Msa0007580:CDS 50.0%
CCGAAGGAAAATGGCATCCT+AGG + chr1_1:10863531-10863550 Msa0007580:CDS 50.0%
!! AGATGGTTCTGGGGACCATA+TGG - chr1_1:10864791-10864810 None:intergenic 50.0%
GTTCCATTTCATCAAGCCCC+AGG - chr1_1:10864902-10864921 None:intergenic 50.0%
TCTTGATAGGCTAGAGAGGG+AGG + chr1_1:10865039-10865058 Msa0007580:three_prime_UTR 50.0%
CTTGATAGGCTAGAGAGGGA+GGG + chr1_1:10865040-10865059 Msa0007580:three_prime_UTR 50.0%
AGAGAGGGAGGGATAAGGTT+TGG + chr1_1:10865051-10865070 Msa0007580:three_prime_UTR 50.0%
!! GGGTGGTGTCGTGTTTGGAT+TGG - chr1_1:10859240-10859259 None:intergenic 55.0%
!! TTTGGGGGTGGTGTCGTGTT+TGG - chr1_1:10859245-10859264 None:intergenic 55.0%
!! TGGTGTTGTGTGTTTGGGGG+TGG - chr1_1:10859257-10859276 None:intergenic 55.0%
AATTCCCGAGTCTGTACGGG+TGG - chr1_1:10860678-10860697 None:intergenic 55.0%
!! TACCCCATACCGGTTCACTG+TGG - chr1_1:10861176-10861195 None:intergenic 55.0%
TATGTGGATACCGGTCCGCA+TGG + chr1_1:10862864-10862883 Msa0007580:CDS 55.0%
GATACCGGTCCGCATGGAAA+TGG + chr1_1:10862870-10862889 Msa0007580:CDS 55.0%
GACCAATTTGCGATTCCGCC+TGG - chr1_1:10863491-10863510 None:intergenic 55.0%
TCACGAGCCCTGAATGACCT+AGG - chr1_1:10863551-10863570 None:intergenic 55.0%
!! ATCTAGGGGCACCTGTTAGC+CGG + chr1_1:10864314-10864333 Msa0007580:intron 55.0%
TATCCATCAGCCTCAGCCGT+CGG - chr1_1:10864849-10864868 None:intergenic 55.0%
AGGCTAGAGAGGGAGGGATA+AGG + chr1_1:10865046-10865065 Msa0007580:three_prime_UTR 55.0%
AGCCACCACCCGTACAGACT+CGG + chr1_1:10860670-10860689 Msa0007580:CDS 60.0%
! CCTGCCATTTCCATGCGGAC+CGG - chr1_1:10862877-10862896 None:intergenic 60.0%
ATCCATCAGCCTCAGCCGTC+GGG - chr1_1:10864848-10864867 None:intergenic 60.0%
GCCACCACCCGTACAGACTC+GGG + chr1_1:10860671-10860690 Msa0007580:CDS 65.0%
TCCCGAGTCTGTACGGGTGG+TGG - chr1_1:10860675-10860694 None:intergenic 65.0%
CCGGTCCGCATGGAAATGGC+AGG + chr1_1:10862874-10862893 Msa0007580:CDS 65.0%
GGAGAAGTTCCCGACGGCTG+AGG + chr1_1:10864836-10864855 Msa0007580:three_prime_UTR 65.0%
TTCCCGACGGCTGAGGCTGA+TGG + chr1_1:10864843-10864862 Msa0007580:three_prime_UTR 65.0%
GTCGAGGGGGAGCTCTGCAG+CGG - chr1_1:10860588-10860607 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 10859032 10865254 10859032 ID=Msa0007580;Name=Msa0007580
chr1_1 mRNA 10859032 10865254 10859032 ID=Msa0007580-mRNA-1;Parent=Msa0007580;Name=Msa0007580-mRNA-1;_AED=0.20;_eAED=0.20;_QI=377|0.88|1|1|0.77|0.8|10|507|373
chr1_1 exon 10859032 10859334 10859032 ID=Msa0007580-mRNA-1:exon:3972;Parent=Msa0007580-mRNA-1
chr1_1 exon 10860364 10860842 10860364 ID=Msa0007580-mRNA-1:exon:3973;Parent=Msa0007580-mRNA-1
chr1_1 exon 10861087 10861185 10861087 ID=Msa0007580-mRNA-1:exon:3974;Parent=Msa0007580-mRNA-1
chr1_1 exon 10862323 10862423 10862323 ID=Msa0007580-mRNA-1:exon:3975;Parent=Msa0007580-mRNA-1
chr1_1 exon 10862651 10862722 10862651 ID=Msa0007580-mRNA-1:exon:3976;Parent=Msa0007580-mRNA-1
chr1_1 exon 10862863 10862953 10862863 ID=Msa0007580-mRNA-1:exon:3977;Parent=Msa0007580-mRNA-1
chr1_1 exon 10863332 10863394 10863332 ID=Msa0007580-mRNA-1:exon:3978;Parent=Msa0007580-mRNA-1
chr1_1 exon 10863479 10863601 10863479 ID=Msa0007580-mRNA-1:exon:3979;Parent=Msa0007580-mRNA-1
chr1_1 exon 10864455 10864493 10864455 ID=Msa0007580-mRNA-1:exon:3980;Parent=Msa0007580-mRNA-1
chr1_1 exon 10864619 10865254 10864619 ID=Msa0007580-mRNA-1:exon:3981;Parent=Msa0007580-mRNA-1
chr1_1 five_prime_UTR 10859032 10859334 10859032 ID=Msa0007580-mRNA-1:five_prime_utr;Parent=Msa0007580-mRNA-1
chr1_1 five_prime_UTR 10860364 10860437 10860364 ID=Msa0007580-mRNA-1:five_prime_utr;Parent=Msa0007580-mRNA-1
chr1_1 CDS 10860438 10860842 10860438 ID=Msa0007580-mRNA-1:cds;Parent=Msa0007580-mRNA-1
chr1_1 CDS 10861087 10861185 10861087 ID=Msa0007580-mRNA-1:cds;Parent=Msa0007580-mRNA-1
chr1_1 CDS 10862323 10862423 10862323 ID=Msa0007580-mRNA-1:cds;Parent=Msa0007580-mRNA-1
chr1_1 CDS 10862651 10862722 10862651 ID=Msa0007580-mRNA-1:cds;Parent=Msa0007580-mRNA-1
chr1_1 CDS 10862863 10862953 10862863 ID=Msa0007580-mRNA-1:cds;Parent=Msa0007580-mRNA-1
chr1_1 CDS 10863332 10863394 10863332 ID=Msa0007580-mRNA-1:cds;Parent=Msa0007580-mRNA-1
chr1_1 CDS 10863479 10863601 10863479 ID=Msa0007580-mRNA-1:cds;Parent=Msa0007580-mRNA-1
chr1_1 CDS 10864455 10864493 10864455 ID=Msa0007580-mRNA-1:cds;Parent=Msa0007580-mRNA-1
chr1_1 CDS 10864619 10864747 10864619 ID=Msa0007580-mRNA-1:cds;Parent=Msa0007580-mRNA-1
chr1_1 three_prime_UTR 10864748 10865254 10864748 ID=Msa0007580-mRNA-1:three_prime_utr;Parent=Msa0007580-mRNA-1
Gene Sequence

>Msa0007580

ATGAAGAAAGCATTTGCATGGCCACAATTCACAAAAAATCTTCTGATCATGGTTGGATCAAGACACAGATCAAACTTAAAGAGGCCTACTTGGATTATCGTTTTAGTGTTCATAGTCTGCTTTTTTCTGATTGCTGCTTATATTTATCCGCTGCAGAGCTCCCCCTCGACGTGTTCTTTGTTTAACTCTCAAGGTTGTAGTGTTGTTGGTGGTGTTGATCGTACATTTAATAAGCCACCACCCGTACAGACTCGGGAATTCACCGATAAAGAGACTGAATCTCGGGTTGTTATTAACGAAATTCTTAAGTACTATGCTGTTCAAAGCACGGTCCCTAAAGTTGCTTTTATGTTTTTGACTCCGGGATCATTACCTTTTGAGAAGCTCTGGCATACATTCTTCCAGGGCCATGAAGGAAAATTTTCTGTCTATGTACATGCATCAAAGGAAAAACCGATACATGTCAGCCCCTATTTTGTTGGACGAGACATCCACAGTGAACCGGTAACTTGGGGAAGAATTTCTATGGTTGAGGCGGAAAGGAGACTTTTGGCAAATGCACTTTTAGACCCTGATAACCAACATTTTGTATTGTTGTCTGATAGCTGTATACCAGTGCGCCGCTTTGATTTTGTGTACAACTACTTGTTATTAACAAGTGTCAGCTTTATTGACAGCTATGTGGATACCGGTCCGCATGGAAATGGCAGGTATGTAGAACGCATGTTGCCTGAAGTAGAAAAGAAGGATTTTCGAAAGGGTTCACAGCCGAATATGGAGGGAAACCGCAACTGCTATTCTGATGAGCATTACTTGCCAACCTTTTTTAATATGCTTGATCCAGGCGGAATCGCAAATTGGTCGGTGACATATGTTGATTGGTCCGAAGGAAAATGGCATCCTAGGTCATTCAGGGCTCGTGATATTACTTATAAACTCATGAAAAAAATAGCGTACATTGATGAAAGTCCACATTATACAAGTGATGCAAAGAGAACAGTGGTGATTGCACCTTGCGAGTTAAATGGCTCAAAACGATCTTGTTATCTATTTGCCCGGAAGTTTTATCCGGAAACTCAAGATAAATTGATTCACCTTTTCTCGAATTCAACTACATTCTAA
Protein sequence

>Msa0007580

MKKAFAWPQFTKNLLIMVGSRHRSNLKRPTWIIVLVFIVCFFLIAAYIYPLQSSPSTCSLFNSQGCSVVGGVDRTFNKPPPVQTREFTDKETESRVVINEILKYYAVQSTVPKVAFMFLTPGSLPFEKLWHTFFQGHEGKFSVYVHASKEKPIHVSPYFVGRDIHSEPVTWGRISMVEAERRLLANALLDPDNQHFVLLSDSCIPVRRFDFVYNYLLLTSVSFIDSYVDTGPHGNGRYVERMLPEVEKKDFRKGSQPNMEGNRNCYSDEHYLPTFFNMLDPGGIANWSVTYVDWSEGKWHPRSFRARDITYKLMKKIAYIDESPHYTSDAKRTVVIAPCELNGSKRSCYLFARKFYPETQDKLIHLFSNSTTF*