AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0007670

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0007670 MtrunA17_Chr1g0148241 91.000 400 8 2 1 373 1 399 0.0 743
Msa0007670 MtrunA17_Chr3g0138871 62.176 386 108 5 16 371 1 378 4.91e-178 499
Msa0007670 MtrunA17_Chr4g0071911 58.915 387 125 3 13 372 14 393 9.53e-164 464
Msa0007670 MtrunA17_Chr2g0298501 55.897 390 136 5 11 372 11 392 6.45e-150 429
Msa0007670 MtrunA17_Chr2g0298511 50.000 400 155 5 1 372 1 383 2.76e-132 383
Msa0007670 MtrunA17_Chr1g0151841 36.464 362 186 8 35 369 28 372 7.92e-64 208
Msa0007670 MtrunA17_Chr1g0209531 37.333 375 177 10 30 366 32 386 5.70e-63 207
Msa0007670 MtrunA17_Chr2g0276861 41.356 295 134 4 103 373 159 438 4.62e-60 200
Msa0007670 MtrunA17_Chr8g0341461 39.490 314 148 7 78 366 110 406 2.78e-59 197
Msa0007670 MtrunA17_Chr5g0423131 37.419 310 150 6 80 364 91 381 9.80e-57 190
Msa0007670 MtrunA17_Chr6g0484141 38.929 280 128 5 111 364 148 410 4.80e-54 184
Msa0007670 MtrunA17_Chr5g0394961 38.710 279 130 5 111 364 150 412 1.00e-51 177
Msa0007670 MtrunA17_Chr3g0136091 37.113 291 159 5 81 364 111 384 1.41e-51 176
Msa0007670 MtrunA17_Chr4g0073871 37.555 229 105 3 167 373 9 221 8.72e-43 148
Msa0007670 MtrunA17_Chr2g0289021 33.221 298 137 9 112 355 61 350 1.63e-42 152
Msa0007670 MtrunA17_Chr8g0384601 31.847 314 151 8 108 366 51 356 1.02e-40 147
Msa0007670 MtrunA17_Chr5g0394981 36.199 221 101 4 167 364 2 205 8.34e-38 135
Msa0007670 MtrunA17_Chr1g0170231 33.667 300 129 11 112 366 63 337 1.38e-36 135
Msa0007670 MtrunA17_Chr3g0137661 31.742 356 176 18 50 366 42 369 3.55e-32 124
Msa0007670 MtrunA17_Chr2g0322161 27.812 320 146 12 103 364 66 358 1.56e-26 108
Msa0007670 MtrunA17_Chr1g0170151 29.276 304 149 7 105 366 57 336 4.63e-25 104
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0007670 AT4G31350.4 55.208 384 136 4 17 373 1 375 1.17e-143 412
Msa0007670 AT4G31350.1 55.208 384 136 4 17 373 1 375 1.17e-143 412
Msa0007670 AT4G31350.2 55.208 384 136 4 17 373 1 375 1.17e-143 412
Msa0007670 AT2G19160.2 51.309 382 151 4 19 373 20 393 6.10e-141 406
Msa0007670 AT2G19160.1 51.309 382 151 4 19 373 20 393 6.10e-141 406
Msa0007670 AT5G57270.3 51.163 387 153 4 16 372 5 385 8.30e-141 405
Msa0007670 AT5G57270.1 51.163 387 153 4 16 372 5 385 8.30e-141 405
Msa0007670 AT5G57270.4 51.163 387 153 4 16 372 5 385 8.30e-141 405
Msa0007670 AT5G57270.5 51.163 387 153 4 16 372 5 385 8.30e-141 405
Msa0007670 AT5G57270.2 51.163 387 153 4 16 372 5 385 8.30e-141 405
Msa0007670 AT4G25870.1 49.610 385 159 4 16 371 7 385 1.30e-139 402
Msa0007670 AT4G31350.3 54.427 384 134 5 17 373 1 370 1.72e-138 399
Msa0007670 AT4G30060.2 50.262 382 153 5 19 371 21 394 2.76e-133 387
Msa0007670 AT4G30060.1 50.262 382 153 5 19 371 21 394 2.76e-133 387
Msa0007670 AT3G21310.1 40.895 313 144 6 78 366 81 376 2.10e-62 205
Msa0007670 AT3G21310.3 40.895 313 144 6 78 366 81 376 2.10e-62 205
Msa0007670 AT5G11730.1 41.083 314 142 7 78 366 84 379 2.64e-62 204
Msa0007670 AT5G25970.1 41.993 281 121 5 111 366 117 380 3.43e-61 202
Msa0007670 AT5G25970.2 41.993 281 121 5 111 366 117 380 3.43e-61 202
Msa0007670 AT5G25970.3 41.993 281 121 5 111 366 117 380 3.43e-61 202
Msa0007670 AT1G73810.1 42.199 282 118 6 113 366 147 411 5.81e-61 202
Msa0007670 AT1G51770.1 40.063 317 147 7 75 366 87 385 6.96e-61 201
Msa0007670 AT1G68390.1 38.750 320 151 7 74 366 100 401 1.87e-60 200
Msa0007670 AT5G16170.1 41.727 278 127 4 113 366 136 402 3.77e-59 197
Msa0007670 AT1G10280.1 39.937 318 151 6 80 373 111 412 8.20e-58 194
Msa0007670 AT1G10880.1 39.437 284 130 7 108 366 113 379 1.15e-56 190
Msa0007670 AT1G68380.1 34.908 381 176 11 31 368 36 387 8.99e-56 187
Msa0007670 AT5G14550.4 37.132 272 135 10 112 355 64 327 1.22e-44 157
Msa0007670 AT1G51770.2 35.647 317 134 8 75 366 87 358 1.65e-44 158
Msa0007670 AT3G21310.2 46.821 173 89 2 78 248 81 252 2.83e-41 146
Msa0007670 AT5G14550.3 33.779 299 135 10 112 355 64 354 1.81e-40 147
Msa0007670 AT5G14550.1 33.779 299 135 10 112 355 64 354 2.21e-40 147
Msa0007670 AT5G25330.1 36.426 291 131 15 113 366 81 354 1.38e-37 139
Msa0007670 AT3G52060.1 32.414 290 136 10 112 366 74 338 1.74e-37 138
Msa0007670 AT5G14550.2 35.458 251 111 9 112 317 64 308 1.09e-36 136
Msa0007670 AT1G11940.1 32.680 306 145 11 112 364 73 370 1.33e-36 137
Msa0007670 AT1G62305.1 33.333 300 132 12 112 355 68 355 2.75e-36 136
Msa0007670 AT1G62305.3 43.709 151 75 4 112 256 68 214 4.36e-31 120
Msa0007670 AT4G32290.1 32.515 326 167 10 80 366 60 371 6.54e-31 121
Msa0007670 AT5G22070.1 28.896 308 141 9 113 366 71 354 1.76e-28 114
Msa0007670 AT1G11940.2 42.384 151 78 4 112 256 73 220 1.81e-28 112
Msa0007670 AT1G62305.2 29.966 297 122 12 112 355 68 331 1.06e-23 100

Find 133 sgRNAs with CRISPR-Local

Find 354 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACATACGACATAGCTTATT+TGG 0.115601 1_1:+10961721 Msa0007670:three_prime_UTR
TTTGCGTTTGCGTTTGTATT+TGG 0.199099 1_1:-10956011 None:intergenic
AATACAAAATGTTGGTTATC+AGG 0.204352 1_1:-10959297 None:intergenic
ATAAATACTTCTTCATTCTT+TGG 0.235633 1_1:+10961661 Msa0007670:three_prime_UTR
ATCAATTTATCTTGAGTTTC+CGG 0.235833 1_1:-10961600 None:intergenic
TTCTGAGGGTTGAAAAGTTT+TGG 0.280828 1_1:+10961919 Msa0007670:three_prime_UTR
ATTGCACCTTGCGAGTTAAA+TGG 0.295978 1_1:+10961537 Msa0007670:CDS
GATGTCTCGTCCAACAAAAT+AGG 0.299048 1_1:-10958060 None:intergenic
TTGCGGTTTCCCTCCATATT+CGG 0.306368 1_1:-10960239 None:intergenic
TTAAATTTATCAGCCGAATA+TGG 0.312461 1_1:+10960226 Msa0007670:intron
CCGAGATTCAGTCTCTTTAT+CGG 0.320366 1_1:-10957609 None:intergenic
GCTTGTCTGGTTAGATAATA+TGG 0.322305 1_1:+10961834 Msa0007670:three_prime_UTR
CAAACTTAAAGAGGCCTACT+TGG 0.327146 1_1:+10957417 Msa0007670:CDS
TTGATTGGTCCGAAGGAAAA+TGG 0.332260 1_1:+10960429 Msa0007670:CDS
GAGTTTCCGGATAAAACTTC+CGG 0.336942 1_1:-10961587 None:intergenic
AATGGCATCCTAGGTCATTC+AGG 0.339509 1_1:+10960447 Msa0007670:CDS
CAACGTTGGTGTTGTGTGTT+GGG 0.349136 1_1:-10956170 None:intergenic
TTGCGTTTGCGTTTGTATTT+GGG 0.352127 1_1:-10956010 None:intergenic
AACTTGGGGAAGAATTTCTA+TGG 0.357256 1_1:+10959233 Msa0007670:CDS
GTTGACATTGTTTCTTCATC+AGG 0.373383 1_1:+10956189 Msa0007670:five_prime_UTR
GCTTTCTTCATTTAAGTTCA+AGG 0.382059 1_1:-10957335 None:intergenic
GATCCCTGCATTCAATTCAT+AGG 0.384468 1_1:+10956223 Msa0007670:five_prime_UTR
TTTCCTGGGGCTTGATGAAA+TGG 0.385080 1_1:+10961802 Msa0007670:three_prime_UTR
ATGTCTCGTCCAACAAAATA+GGG 0.391447 1_1:-10958059 None:intergenic
ATCCAGGCGGAATCGCAAAT+TGG 0.399315 1_1:+10960393 Msa0007670:CDS
TGAGGCGGAAAGGAGACTTT+TGG 0.402038 1_1:+10959257 Msa0007670:CDS
AAAACATAAAAGCAACTTTA+GGG 0.408320 1_1:-10957679 None:intergenic
TCAATTTCTTTCAGGTAACT+TGG 0.409545 1_1:+10959217 Msa0007670:intron
GCTCTGGCATACATTCTTCC+AGG 0.421167 1_1:+10957730 Msa0007670:CDS
AGATAATTGCTTTGAGCGTA+TGG 0.432358 1_1:+10962103 Msa0007670:three_prime_UTR
GGGTGGTGTCGTGTTTGGAT+TGG 0.435090 1_1:-10956148 None:intergenic
GTATGTGCGAAAGATGGTTC+TGG 0.438017 1_1:-10961705 None:intergenic
TTTGGTGAATCAACACCATA+TGG 0.440790 1_1:+10961679 Msa0007670:three_prime_UTR
TTTAGATTTGAAACGCCAAT+TGG 0.446204 1_1:-10956117 None:intergenic
CAATTTCTTTCAGGTAACTT+GGG 0.448407 1_1:+10959218 Msa0007670:intron
GACCAATTTGCGATTCCGCC+TGG 0.448772 1_1:-10960395 None:intergenic
GGTGAATTCCCGAGTCTGTA+CGG 0.449505 1_1:-10957588 None:intergenic
AACAAAATATATTGTAGAAT+AGG 0.451471 1_1:-10961861 None:intergenic
GATACCGGTCCGCATGGAAA+TGG 0.453440 1_1:+10959777 Msa0007670:CDS
TCTCAAGGTTGTAGTGTTGT+TGG 0.455242 1_1:+10957533 Msa0007670:CDS
AGATGGTTCTGGGGACCATA+TGG 0.458184 1_1:-10961694 None:intergenic
CAAGTGTCAGCTTTATTGAC+AGG 0.461823 1_1:+10959609 Msa0007670:CDS
AGTTTCCGGATAAAACTTCC+GGG 0.462746 1_1:-10961586 None:intergenic
AGGCTAGAGAGGGAGGGATA+AGG 0.464072 1_1:+10961952 Msa0007670:three_prime_UTR
ATGGAACTTCTGAGCTTGTC+TGG 0.468474 1_1:+10961821 Msa0007670:three_prime_UTR
TGTTCTTTGTTTAACTCTCA+AGG 0.472432 1_1:+10957518 Msa0007670:CDS
ATCCATCAGCCTCAGCCGTC+GGG 0.472492 1_1:-10961751 None:intergenic
TCAACGTTGGTGTTGTGTGT+TGG 0.477852 1_1:-10956171 None:intergenic
GGGAAGAATTTCTATGGTTG+AGG 0.477859 1_1:+10959239 Msa0007670:CDS
CCGAAGGAAAATGGCATCCT+AGG 0.478726 1_1:+10960438 Msa0007670:CDS
GACACAGATCAAACTTAAAG+AGG 0.482413 1_1:+10957408 Msa0007670:CDS
TGGTATCAACGTTCTCCAAT+TGG 0.486486 1_1:+10956102 Msa0007670:five_prime_UTR
TCCCGAGTCTGTACGGGTGG+TGG 0.487361 1_1:-10957581 None:intergenic
AATACCTATGAATTGAATGC+AGG 0.488603 1_1:-10956227 None:intergenic
AGAGAGGGAGGGATAAGGTT+TGG 0.493480 1_1:+10961957 Msa0007670:three_prime_UTR
TTCCCGACGGCTGAGGCTGA+TGG 0.495389 1_1:+10961749 Msa0007670:three_prime_UTR
TATGTGCGAAAGATGGTTCT+GGG 0.496070 1_1:-10961704 None:intergenic
GTTGCTGTGCTACTAAGTTC+AGG 0.502540 1_1:-10955954 None:intergenic
TATGTTTAGATGCTTGATCC+AGG 0.504214 1_1:+10960377 Msa0007670:intron
GGTCGGTGACATATGTTGAT+TGG 0.514974 1_1:+10960414 Msa0007670:CDS
AGCCACCACCCGTACAGACT+CGG 0.518673 1_1:+10957579 Msa0007670:CDS
ACGAGACATCCACAGTGAAC+CGG 0.526163 1_1:+10958073 Msa0007670:CDS
ATGTAGTTGAATTCGAGAAA+AGG 0.526682 1_1:-10961626 None:intergenic
AAACTAATGCAGGGCCATGA+AGG 0.526685 1_1:+10957984 Msa0007670:intron
ATACAAAATGTTGGTTATCA+GGG 0.528558 1_1:-10959296 None:intergenic
CAAGGTTGTAGTGTTGTTGG+TGG 0.530530 1_1:+10957536 Msa0007670:CDS
GGAGAAGTTCCCGACGGCTG+AGG 0.530631 1_1:+10961742 Msa0007670:three_prime_UTR
CGATAAAGAGACTGAATCTC+GGG 0.531188 1_1:+10957610 Msa0007670:CDS
GTATGCCAGAGCTTCTCAAA+AGG 0.532388 1_1:-10957719 None:intergenic
ACAAAATCAAAGCGGCGCAC+TGG 0.534914 1_1:-10959566 None:intergenic
GTGTCGTGTTTGGATTGGAT+CGG 0.535157 1_1:-10956143 None:intergenic
GTTGCCTGAAGTAGAAAAGA+AGG 0.536747 1_1:+10959818 Msa0007670:CDS
GATCTTGTTATCTATTTGCC+CGG 0.539473 1_1:+10961568 Msa0007670:CDS
TTTGCATCACTTGTATAATG+TGG 0.541176 1_1:-10961376 None:intergenic
AAATAGGGGCTGACATGTAT+CGG 0.542436 1_1:-10958044 None:intergenic
GCCACCACCCGTACAGACTC+GGG 0.543889 1_1:+10957580 Msa0007670:CDS
GATGCGTATGGAGAAGTTGA+AGG 0.544754 1_1:+10957308 Msa0007670:five_prime_UTR
GTGAATTCCCGAGTCTGTAC+GGG 0.546668 1_1:-10957587 None:intergenic
TGATAGATTACAGATGCGTA+TGG 0.547593 1_1:+10957296 Msa0007670:five_prime_UTR
GTTCCATTTCATCAAGCCCC+AGG 0.549265 1_1:-10961805 None:intergenic
TGTCTATGTACATGCATCAA+AGG 0.549613 1_1:+10958016 Msa0007670:CDS
ATGGCATCCTAGGTCATTCA+GGG 0.550473 1_1:+10960448 Msa0007670:CDS
AGATTATTAGATTCTTCTGA+GGG 0.550903 1_1:+10961905 Msa0007670:three_prime_UTR
TCTTGATAGGCTAGAGAGGG+AGG 0.551094 1_1:+10961945 Msa0007670:three_prime_UTR
TTGACATTGTTTCTTCATCA+GGG 0.551846 1_1:+10956190 Msa0007670:five_prime_UTR
TTCTCAAAAGGTAATGATCC+CGG 0.552277 1_1:-10957707 None:intergenic
AACGTTGGTGTTGTGTGTTG+GGG 0.556212 1_1:-10956169 None:intergenic
CCTGCCATTTCCATGCGGAC+CGG 0.561360 1_1:-10959781 None:intergenic
TCGTGTTTGGATTGGATCGG+TGG 0.566887 1_1:-10956140 None:intergenic
CCGATAAAGAGACTGAATCT+CGG 0.567122 1_1:+10957609 Msa0007670:CDS
TTTCTATGGTTGAGGCGGAA+AGG 0.568574 1_1:+10959247 Msa0007670:CDS
ATGCGTATGGAGAAGTTGAA+GGG 0.568960 1_1:+10957309 Msa0007670:five_prime_UTR
ATTTATCAGCCGAATATGGA+GGG 0.569886 1_1:+10960230 Msa0007670:intron
TTTGAGCCATTTAACTCGCA+AGG 0.572858 1_1:-10961543 None:intergenic
CCGGTCCGCATGGAAATGGC+AGG 0.574083 1_1:+10959781 Msa0007670:CDS
TATTCTTGATAGGCTAGAGA+GGG 0.576080 1_1:+10961942 Msa0007670:three_prime_UTR
AATTTCTTTCAGGTAACTTG+GGG 0.576412 1_1:+10959219 Msa0007670:intron
ACATATGTTGATTGGTCCGA+AGG 0.578375 1_1:+10960422 Msa0007670:CDS
TAGATTATTAGATTCTTCTG+AGG 0.578712 1_1:+10961904 Msa0007670:three_prime_UTR
CAGACAACAATACAAAATGT+TGG 0.582838 1_1:-10959305 None:intergenic
AAATGAAGAAAGCATTTGCA+TGG 0.584582 1_1:+10957345 Msa0007670:exon
TATCCATCAGCCTCAGCCGT+CGG 0.586020 1_1:-10961752 None:intergenic
AAGAATTTCTATGGTTGAGG+CGG 0.595575 1_1:+10959242 Msa0007670:CDS
ACATTATACAAGTGATGCAA+AGG 0.598519 1_1:+10961378 Msa0007670:CDS
AATTTATCAGCCGAATATGG+AGG 0.605235 1_1:+10960229 Msa0007670:intron
TATGTCGTATGTGCGAAAGA+TGG 0.605943 1_1:-10961711 None:intergenic
TCACGAGCCCTGAATGACCT+AGG 0.607827 1_1:-10960455 None:intergenic
CTGCTTATATTTATCCGCTG+CGG 0.609061 1_1:+10957480 Msa0007670:CDS
GTATTCTTGATAGGCTAGAG+AGG 0.613057 1_1:+10961941 Msa0007670:three_prime_UTR
ATACCTATGAATTGAATGCA+GGG 0.613189 1_1:-10956226 None:intergenic
CTTGATAGGCTAGAGAGGGA+GGG 0.618521 1_1:+10961946 Msa0007670:three_prime_UTR
ACTAAAACGATAATCCAAGT+AGG 0.618618 1_1:-10957431 None:intergenic
GCTCATCAGAATAGCAGTTG+CGG 0.627810 1_1:-10960256 None:intergenic
TTAAACAAAGAACACGTCGA+GGG 0.629738 1_1:-10957509 None:intergenic
ACGTTGGTGTTGTGTGTTGG+GGG 0.633168 1_1:-10956168 None:intergenic
AATTCCCGAGTCTGTACGGG+TGG 0.635893 1_1:-10957584 None:intergenic
GTACTATGCTGTTCAAAGCA+CGG 0.641245 1_1:+10957655 Msa0007670:CDS
GAGAACGTTGATACCAGTGT+AGG 0.641386 1_1:-10956095 None:intergenic
TATGTGGATACCGGTCCGCA+TGG 0.642514 1_1:+10959771 Msa0007670:CDS
AGGCGGAATCGCAAATTGGT+CGG 0.649905 1_1:+10960397 Msa0007670:CDS
TAAACAAAGAACACGTCGAG+GGG 0.662055 1_1:-10957508 None:intergenic
ATGTGCGAAAGATGGTTCTG+GGG 0.665884 1_1:-10961703 None:intergenic
TGCGTATGGAGAAGTTGAAG+GGG 0.668554 1_1:+10957310 Msa0007670:five_prime_UTR
TGTCTCGTCCAACAAAATAG+GGG 0.669880 1_1:-10958058 None:intergenic
GTTTAGATGCTTGATCCAGG+CGG 0.670501 1_1:+10960380 Msa0007670:intron
TTATTTGGAGAAGTTCCCGA+CGG 0.684804 1_1:+10961736 Msa0007670:three_prime_UTR
AAACAAAGAACACGTCGAGG+GGG 0.699297 1_1:-10957507 None:intergenic
ACATACCTGCCATTTCCATG+CGG 0.707617 1_1:-10959786 None:intergenic
TACCCCATACCGGTTCACTG+TGG 0.707943 1_1:-10958082 None:intergenic
ACATGTCTTACAGAGAACAG+TGG 0.711790 1_1:+10961512 Msa0007670:intron
AGTTGTACACAAAATCAAAG+CGG 0.723003 1_1:-10959574 None:intergenic
GTTAAACAAAGAACACGTCG+AGG 0.732342 1_1:-10957510 None:intergenic
TGAAGAAACAATGTCAACGT+TGG 0.734229 1_1:-10956184 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAATATATCACAAATTA+TGG - chr1_1:10956573-10956592 None:intergenic 10.0%
!! AACAATATAATAAATGAAAA+AGG - chr1_1:10957825-10957844 None:intergenic 10.0%
!! TATTTATACTAGATAAAAAT+TGG - chr1_1:10960613-10960632 None:intergenic 10.0%
!!! ACTTTTTTACTTTTTCAATT+CGG + chr1_1:10956426-10956445 Msa0007670:intron 15.0%
!!! TTTTTGTTATTGTTAGAATT+GGG + chr1_1:10956504-10956523 Msa0007670:intron 15.0%
!! ATAAGAAGTTGTTAAAATAT+AGG + chr1_1:10956967-10956986 Msa0007670:intron 15.0%
!! TAAGAAGTTGTTAAAATATA+GGG + chr1_1:10956968-10956987 Msa0007670:intron 15.0%
!!! TATTTTACTATTAAGGATTA+AGG - chr1_1:10958803-10958822 None:intergenic 15.0%
!! AAAAAAAAAAAAAAGCTATG+TGG + chr1_1:10959755-10959774 Msa0007670:intron 15.0%
!! TTACTACTACTATTAATTAA+TGG + chr1_1:10960788-10960807 Msa0007670:intron 15.0%
!! AAAAGCAATATTATAGAATA+TGG - chr1_1:10961451-10961470 None:intergenic 15.0%
!! AACAAAATATATTGTAGAAT+AGG - chr1_1:10961864-10961883 None:intergenic 15.0%
!!! GTTTTTGTTATTGTTAGAAT+TGG + chr1_1:10956503-10956522 Msa0007670:intron 20.0%
!!! TTTTGTTATTGTTAGAATTG+GGG + chr1_1:10956505-10956524 Msa0007670:intron 20.0%
!! AAGAAGTTGTTAAAATATAG+GGG + chr1_1:10956969-10956988 Msa0007670:intron 20.0%
!! ATAGAAAGTGGTTAAATATA+GGG + chr1_1:10957000-10957019 Msa0007670:intron 20.0%
!!! CTCTTTATTATGTTTTTTGT+TGG + chr1_1:10957242-10957261 Msa0007670:intron 20.0%
!! AAAACATAAAAGCAACTTTA+GGG - chr1_1:10957682-10957701 None:intergenic 20.0%
!! AAAAACATAAAAGCAACTTT+AGG - chr1_1:10957683-10957702 None:intergenic 20.0%
!! CAAGTAAAGTTCAAATAAAT+AGG - chr1_1:10957962-10957981 None:intergenic 20.0%
!!! ATATATACTAGCTCTTTATA+TGG + chr1_1:10958120-10958139 Msa0007670:intron 20.0%
!! TTATCATTCTTAGCTTATAT+TGG - chr1_1:10958158-10958177 None:intergenic 20.0%
!!! TCTTCAGCTTATATTTTATT+AGG - chr1_1:10958532-10958551 None:intergenic 20.0%
!! CGACTTATTATTAATTATCA+TGG - chr1_1:10958627-10958646 None:intergenic 20.0%
!! TGATATTGATAAAAACTCAT+TGG + chr1_1:10958963-10958982 Msa0007670:intron 20.0%
!!! TTATTCATCTAATTTGTAGA+AGG - chr1_1:10959649-10959668 None:intergenic 20.0%
!! GCTTGAATTTATTAAAATAG+AGG - chr1_1:10960047-10960066 None:intergenic 20.0%
!! TAAACTCATGAAAAAAATAG+CGG + chr1_1:10960487-10960506 Msa0007670:CDS 20.0%
!!! ATTACGTTCAAAAGTATAAT+TGG + chr1_1:10960691-10960710 Msa0007670:intron 20.0%
!!! TTTTTCAATATACCATTGTA+TGG - chr1_1:10961077-10961096 None:intergenic 20.0%
!!! GTTTTGAAACAAAAACAAAA+TGG + chr1_1:10961133-10961152 Msa0007670:intron 20.0%
!! TGGTAAAACAAACAAATATA+TGG + chr1_1:10961153-10961172 Msa0007670:intron 20.0%
!! AAAAATATGCACTAAAAAAG+AGG - chr1_1:10961246-10961265 None:intergenic 20.0%
!! TGGAATATTGTAAATTAACA+AGG - chr1_1:10961288-10961307 None:intergenic 20.0%
!! AATATTATAGAATATGGAAG+AGG - chr1_1:10961445-10961464 None:intergenic 20.0%
!! ATAAATACTTCTTCATTCTT+TGG + chr1_1:10961661-10961680 Msa0007670:three_prime_UTR 20.0%
!! TTCATTTTCGAATACTTATG+TGG + chr1_1:10956274-10956293 Msa0007670:intron 25.0%
! GCAAATTGTTATATACAATC+AGG + chr1_1:10956704-10956723 Msa0007670:intron 25.0%
! ATTAATTATTGTTTCAGTCG+TGG + chr1_1:10956743-10956762 Msa0007670:intron 25.0%
! ATAGCAAGTGGTTAAATATA+TGG + chr1_1:10956902-10956921 Msa0007670:intron 25.0%
!!! TTAACAACTTGCTATGAATT+TGG - chr1_1:10956929-10956948 None:intergenic 25.0%
! TTAACAACTTCTTATCACTT+AGG - chr1_1:10956962-10956981 None:intergenic 25.0%
! GATAGAAAGTGGTTAAATAT+AGG + chr1_1:10956999-10957018 Msa0007670:intron 25.0%
! TAGAAAGTGGTTAAATATAG+GGG + chr1_1:10957001-10957020 Msa0007670:intron 25.0%
!!! AGAAGATTTTTTGTGAATTG+TGG - chr1_1:10957371-10957390 None:intergenic 25.0%
! ACGTCTTCTTTCAAAATAAT+AGG + chr1_1:10957794-10957813 Msa0007670:intron 25.0%
!!! TTACCAAGTGCTATTTTTTT+TGG + chr1_1:10957909-10957928 Msa0007670:intron 25.0%
! AAACCAAAAAAAATAGCACT+TGG - chr1_1:10957915-10957934 None:intergenic 25.0%
! TTTACTTGTAAAACTAATGC+AGG + chr1_1:10957974-10957993 Msa0007670:intron 25.0%
! TTACTTGTAAAACTAATGCA+GGG + chr1_1:10957975-10957994 Msa0007670:intron 25.0%
! TATCAAATGATCGAAATTTG+AGG + chr1_1:10958228-10958247 Msa0007670:intron 25.0%
! AATCAATTATGACAAAAGAC+GGG - chr1_1:10958597-10958616 None:intergenic 25.0%
! CAATCAATTATGACAAAAGA+CGG - chr1_1:10958598-10958617 None:intergenic 25.0%
!! AGTATGAATGCAATTGTTTT+CGG - chr1_1:10958674-10958693 None:intergenic 25.0%
!! ATACAAAATGTTGGTTATCA+GGG - chr1_1:10959299-10959318 None:intergenic 25.0%
!! AATACAAAATGTTGGTTATC+AGG - chr1_1:10959300-10959319 None:intergenic 25.0%
!! ATTTTGTATTGTTGTCTGAT+AGG + chr1_1:10959310-10959329 Msa0007670:CDS 25.0%
! TTTGTTCCATTGCTAAAATT+TGG + chr1_1:10959352-10959371 Msa0007670:intron 25.0%
!!! CTAAAATTTGGTTGGTTTTT+GGG + chr1_1:10959364-10959383 Msa0007670:intron 25.0%
! TTTGTTCCATTGCTAAAATT+TGG + chr1_1:10959352-10959371 Msa0007670:intron 25.0%
!!! CTAAAATTTGGTTGGTTTTT+GGG + chr1_1:10959364-10959383 Msa0007670:intron 25.0%
! AAAAGGAACATACAATTGAA+CGG - chr1_1:10959531-10959550 None:intergenic 25.0%
! TATGTAGAATCTTCAATGAA+AGG - chr1_1:10959688-10959707 None:intergenic 25.0%
! TATAACCGACAATAATAACT+TGG - chr1_1:10960122-10960141 None:intergenic 25.0%
!! TTGTTACAAAAAGCATAGAA+AGG - chr1_1:10960185-10960204 None:intergenic 25.0%
! TTAAATTTATCAGCCGAATA+TGG + chr1_1:10960226-10960245 Msa0007670:intron 25.0%
! CACTTATAAAGAGAAAAGAT+TGG - chr1_1:10960314-10960333 None:intergenic 25.0%
! TTTCTCTTTATAAGTGATAC+AGG + chr1_1:10960318-10960337 Msa0007670:intron 25.0%
! TTCTCTTTATAAGTGATACA+GGG + chr1_1:10960319-10960338 Msa0007670:intron 25.0%
! TATCTAGTATAAATATCACC+AGG + chr1_1:10960618-10960637 Msa0007670:intron 25.0%
!! GATTTTCATCAAGATTGTTA+TGG - chr1_1:10960660-10960679 None:intergenic 25.0%
!!! AGATCTCAATTTTTAGATCA+CGG - chr1_1:10961037-10961056 None:intergenic 25.0%
! ATTCTAACAATTCCATACAA+TGG + chr1_1:10961062-10961081 Msa0007670:intron 25.0%
!!! GTTTTTGTTTCAAAACTACA+AGG - chr1_1:10961129-10961148 None:intergenic 25.0%
! AACAACAAATTCAGTTATCT+AGG + chr1_1:10961203-10961222 Msa0007670:intron 25.0%
! ACAACAAATTCAGTTATCTA+GGG + chr1_1:10961204-10961223 Msa0007670:intron 25.0%
! AATTAACAAGGTAAAGACAA+GGG - chr1_1:10961276-10961295 None:intergenic 25.0%
! AAATTAACAAGGTAAAGACA+AGG - chr1_1:10961277-10961296 None:intergenic 25.0%
! ATCAATTTATCTTGAGTTTC+CGG - chr1_1:10961603-10961622 None:intergenic 25.0%
!!! TAGATCAAATTTTGATTTCC+TGG + chr1_1:10961787-10961806 Msa0007670:three_prime_UTR 25.0%
!!! AGATCAAATTTTGATTTCCT+GGG + chr1_1:10961788-10961807 Msa0007670:three_prime_UTR 25.0%
! TAGATTATTAGATTCTTCTG+AGG + chr1_1:10961904-10961923 Msa0007670:three_prime_UTR 25.0%
! AGATTATTAGATTCTTCTGA+GGG + chr1_1:10961905-10961924 Msa0007670:three_prime_UTR 25.0%
!!! AAAGTTTTGGTATTCTTGAT+AGG + chr1_1:10961932-10961951 Msa0007670:three_prime_UTR 25.0%
!!! GTTTATTTTTATACAAGTGC+TGG + chr1_1:10962131-10962150 Msa0007670:three_prime_UTR 25.0%
! TTTAGATTTGAAACGCCAAT+TGG - chr1_1:10956120-10956139 None:intergenic 30.0%
! TTGACATTGTTTCTTCATCA+GGG + chr1_1:10956190-10956209 Msa0007670:five_prime_UTR 30.0%
ATACCTATGAATTGAATGCA+GGG - chr1_1:10956229-10956248 None:intergenic 30.0%
AATACCTATGAATTGAATGC+AGG - chr1_1:10956230-10956249 None:intergenic 30.0%
! TATGATTTGTGTGGTATGTT+TGG + chr1_1:10956634-10956653 Msa0007670:intron 30.0%
! TATGTTTGGATTGAGGTTTT+AGG + chr1_1:10956648-10956667 Msa0007670:intron 30.0%
TGACTAAAATGCAACAAAGT+CGG - chr1_1:10956845-10956864 None:intergenic 30.0%
TTTGCAAGTTTAATAGAGTG+AGG + chr1_1:10957028-10957047 Msa0007670:intron 30.0%
TTGCAAGTTTAATAGAGTGA+GGG + chr1_1:10957029-10957048 Msa0007670:intron 30.0%
! GTTTTGCATACTTGAAAACA+TGG + chr1_1:10957123-10957142 Msa0007670:intron 30.0%
!! CTCTAGAGTATATTGGTTAT+TGG + chr1_1:10957183-10957202 Msa0007670:intron 30.0%
! GCTTTCTTCATTTAAGTTCA+AGG - chr1_1:10957338-10957357 None:intergenic 30.0%
!! AAATGAAGAAAGCATTTGCA+TGG + chr1_1:10957345-10957364 Msa0007670:exon 30.0%
CACAAAAAATCTTCTGATCA+TGG + chr1_1:10957376-10957395 Msa0007670:CDS 30.0%
AAAAATCTTCTGATCATGGT+TGG + chr1_1:10957380-10957399 Msa0007670:CDS 30.0%
ACTAAAACGATAATCCAAGT+AGG - chr1_1:10957434-10957453 None:intergenic 30.0%
! TGTTCTTTGTTTAACTCTCA+AGG + chr1_1:10957518-10957537 Msa0007670:CDS 30.0%
!! TGCTTTTATGTTTTTGACTC+CGG + chr1_1:10957688-10957707 Msa0007670:CDS 30.0%
! AGACAGAAAATTTTCCTTCA+TGG - chr1_1:10958001-10958020 None:intergenic 30.0%
GCTAAGAATGATAAAGAATG+TGG + chr1_1:10958164-10958183 Msa0007670:intron 30.0%
!! CATTCATTTTCCAAAGTGTT+GGG - chr1_1:10958288-10958307 None:intergenic 30.0%
! TCATTCATTTTCCAAAGTGT+TGG - chr1_1:10958289-10958308 None:intergenic 30.0%
GATGCTTATTACTTGTAACT+GGG - chr1_1:10958382-10958401 None:intergenic 30.0%
TGATGCTTATTACTTGTAAC+TGG - chr1_1:10958383-10958402 None:intergenic 30.0%
CAACTAAATCCAAAGAAACA+GGG - chr1_1:10958467-10958486 None:intergenic 30.0%
!!! GGTTTGCTGCATTTTATTTT+TGG + chr1_1:10958830-10958849 Msa0007670:intron 30.0%
TAGTGACAATTTCATAGCTA+TGG + chr1_1:10958864-10958883 Msa0007670:intron 30.0%
ATTTGAGTGGATACATTACA+TGG - chr1_1:10959025-10959044 None:intergenic 30.0%
! GTTCCTTAAAATTTTGCCAT+TGG + chr1_1:10959055-10959074 Msa0007670:intron 30.0%
! TCTCCAATGGCAAAATTTTA+AGG - chr1_1:10959061-10959080 None:intergenic 30.0%
!!! ATGCGTGATTTTTTGAATAG+TGG - chr1_1:10959166-10959185 None:intergenic 30.0%
GAAAGAAATTGAAAACCAGT+TGG - chr1_1:10959209-10959228 None:intergenic 30.0%
!!! ACTGGTTTTCAATTTCTTTC+AGG + chr1_1:10959209-10959228 Msa0007670:intron 30.0%
! TCAATTTCTTTCAGGTAACT+TGG + chr1_1:10959217-10959236 Msa0007670:intron 30.0%
! CAATTTCTTTCAGGTAACTT+GGG + chr1_1:10959218-10959237 Msa0007670:intron 30.0%
! AATTTCTTTCAGGTAACTTG+GGG + chr1_1:10959219-10959238 Msa0007670:intron 30.0%
CAGACAACAATACAAAATGT+TGG - chr1_1:10959308-10959327 None:intergenic 30.0%
TTCCATTGCTAAAATTTGGT+TGG + chr1_1:10959356-10959375 Msa0007670:intron 30.0%
!! AACCAACCAAATTTTAGCAA+TGG - chr1_1:10959361-10959380 None:intergenic 30.0%
!!! GCTAAAATTTGGTTGGTTTT+TGG + chr1_1:10959363-10959382 Msa0007670:intron 30.0%
GAAAGGAACATACAATTGAA+CGG - chr1_1:10959397-10959416 None:intergenic 30.0%
AGTTGTACACAAAATCAAAG+CGG - chr1_1:10959443-10959462 None:intergenic 30.0%
TTCCATTGCTAAAATTTGGT+TGG + chr1_1:10959356-10959375 Msa0007670:intron 30.0%
!! AACCAACCAAATTTTAGCAA+TGG - chr1_1:10959361-10959380 None:intergenic 30.0%
!!! GCTAAAATTTGGTTGGTTTT+TGG + chr1_1:10959363-10959382 Msa0007670:intron 30.0%
AGTTGTACACAAAATCAAAG+CGG - chr1_1:10959443-10959462 None:intergenic 30.0%
GATTCTACATATCTGTTACA+TGG + chr1_1:10959697-10959716 Msa0007670:intron 30.0%
AAAAAAAGCTATGTGGATAC+CGG + chr1_1:10959762-10959781 Msa0007670:intron 30.0%
! AAATCCTTCTTTTCTACTTC+AGG - chr1_1:10959825-10959844 None:intergenic 30.0%
! AGAAAAGAAGGATTTTCGAA+AGG + chr1_1:10959830-10959849 Msa0007670:CDS 30.0%
! GAAAAGAAGGATTTTCGAAA+GGG + chr1_1:10959831-10959850 Msa0007670:CDS 30.0%
TAACCTCAATGAATGGTTTA+TGG - chr1_1:10959883-10959902 None:intergenic 30.0%
CAAATCTTAACCTCAATGAA+TGG - chr1_1:10959890-10959909 None:intergenic 30.0%
CATTCATTGAGGTTAAGATT+TGG + chr1_1:10959888-10959907 Msa0007670:intron 30.0%
!! TCTTCTTGTTTCTAATACAG+TGG + chr1_1:10959977-10959996 Msa0007670:intron 30.0%
ATAAATTCAAGCATCATTGC+AGG + chr1_1:10960055-10960074 Msa0007670:intron 30.0%
TAAATTCAAGCATCATTGCA+GGG + chr1_1:10960056-10960075 Msa0007670:intron 30.0%
GGTTATAGCATCACAAATAA+TGG + chr1_1:10960135-10960154 Msa0007670:intron 30.0%
GCACTTACATTAAAAAAGGT+TGG - chr1_1:10960290-10960309 None:intergenic 30.0%
TGGTGCACTTACATTAAAAA+AGG - chr1_1:10960294-10960313 None:intergenic 30.0%
AGAGTGCAAAAACATTTGAA+GGG - chr1_1:10960537-10960556 None:intergenic 30.0%
! AAGAGTGCAAAAACATTTGA+AGG - chr1_1:10960538-10960557 None:intergenic 30.0%
GCTAAAGACAAATTCTTTGA+TGG - chr1_1:10960570-10960589 None:intergenic 30.0%
! ATAAAAATTGGCTCTCTGAA+AGG - chr1_1:10960601-10960620 None:intergenic 30.0%
ACTAACTAACTAAGCTTACA+AGG - chr1_1:10960858-10960877 None:intergenic 30.0%
TCCTTATATATAGACCAACA+AGG - chr1_1:10960939-10960958 None:intergenic 30.0%
!!! TTTTTTCTGTTACAAGAGAG+AGG - chr1_1:10960969-10960988 None:intergenic 30.0%
!! GATCTCAATTTTTAGATCAC+GGG - chr1_1:10961036-10961055 None:intergenic 30.0%
CAACAAATTCAGTTATCTAG+GGG + chr1_1:10961205-10961224 Msa0007670:intron 30.0%
TTTGAAGATAAAAGCTGTAC+TGG - chr1_1:10961308-10961327 None:intergenic 30.0%
TTTGCATCACTTGTATAATG+TGG - chr1_1:10961379-10961398 None:intergenic 30.0%
ACATTATACAAGTGATGCAA+AGG + chr1_1:10961378-10961397 Msa0007670:CDS 30.0%
!! TATTTCACTTCCTCTAGTTT+TGG + chr1_1:10961410-10961429 Msa0007670:intron 30.0%
ATCATAAGCATTCTTTCAAC+AGG - chr1_1:10961477-10961496 None:intergenic 30.0%
ATGTAGTTGAATTCGAGAAA+AGG - chr1_1:10961629-10961648 None:intergenic 30.0%
!!! GATCAAATTTTGATTTCCTG+GGG + chr1_1:10961789-10961808 Msa0007670:three_prime_UTR 30.0%
TTGCGTTTGCGTTTGTATTT+GGG - chr1_1:10956013-10956032 None:intergenic 35.0%
TTTGCGTTTGCGTTTGTATT+TGG - chr1_1:10956014-10956033 None:intergenic 35.0%
ATGTTGAAAAACACCTACAC+TGG + chr1_1:10956082-10956101 Msa0007670:five_prime_UTR 35.0%
TGAAGAAACAATGTCAACGT+TGG - chr1_1:10956187-10956206 None:intergenic 35.0%
! GTTGACATTGTTTCTTCATC+AGG + chr1_1:10956189-10956208 Msa0007670:five_prime_UTR 35.0%
ATAGATCTCTGTTCTGTTCA+TGG + chr1_1:10956335-10956354 Msa0007670:intron 35.0%
! TACATCGCTTATGATTTGTG+TGG + chr1_1:10956625-10956644 Msa0007670:intron 35.0%
!!! TTTGGATTGAGGTTTTAGGA+AGG + chr1_1:10956652-10956671 Msa0007670:intron 35.0%
!!! TTGGATTGAGGTTTTAGGAA+GGG + chr1_1:10956653-10956672 Msa0007670:intron 35.0%
TTGCTATCAATTCAGTCTCT+AGG - chr1_1:10956889-10956908 None:intergenic 35.0%
!! AAATTAGTCCCTGACTTGTT+AGG - chr1_1:10957071-10957090 None:intergenic 35.0%
TAACAAGTCAGGGACTAATT+TGG + chr1_1:10957070-10957089 Msa0007670:intron 35.0%
!! CCAATATACTCTAGAGTAGA+TGG - chr1_1:10957179-10957198 None:intergenic 35.0%
!! CCATCTACTCTAGAGTATAT+TGG + chr1_1:10957176-10957195 Msa0007670:intron 35.0%
!!! ATGTTTTTTGTTGGTGAGAC+AGG + chr1_1:10957251-10957270 Msa0007670:intron 35.0%
!!! TGTTTTTTGTTGGTGAGACA+GGG + chr1_1:10957252-10957271 Msa0007670:intron 35.0%
TGATAGATTACAGATGCGTA+TGG + chr1_1:10957296-10957315 Msa0007670:five_prime_UTR 35.0%
GACACAGATCAAACTTAAAG+AGG + chr1_1:10957408-10957427 Msa0007670:CDS 35.0%
TTAAACAAAGAACACGTCGA+GGG - chr1_1:10957512-10957531 None:intergenic 35.0%
!! GCTTTTATGTTTTTGACTCC+GGG + chr1_1:10957689-10957708 Msa0007670:CDS 35.0%
TTCTCAAAAGGTAATGATCC+CGG - chr1_1:10957710-10957729 None:intergenic 35.0%
GAATAGGAATGTCATATACC+TGG - chr1_1:10957751-10957770 None:intergenic 35.0%
! AAATCTAAGAGTGTGGTCTA+TGG - chr1_1:10957773-10957792 None:intergenic 35.0%
!! GACAAGCATTGATATGAATG+AGG - chr1_1:10957876-10957895 None:intergenic 35.0%
TGTCTATGTACATGCATCAA+AGG + chr1_1:10958016-10958035 Msa0007670:CDS 35.0%
ATGTCTCGTCCAACAAAATA+GGG - chr1_1:10958062-10958081 None:intergenic 35.0%
TTTGTTAACACCCAACACTT+TGG + chr1_1:10958275-10958294 Msa0007670:intron 35.0%
GGAAAATGAATGACTGTGTA+AGG + chr1_1:10958296-10958315 Msa0007670:intron 35.0%
AAATGAATGACTGTGTAAGG+CGG + chr1_1:10958299-10958318 Msa0007670:intron 35.0%
!!! GGTTTTAATTTAATTCGCGC+AGG - chr1_1:10958429-10958448 None:intergenic 35.0%
! CAGAAATTTCCCTGTTTCTT+TGG + chr1_1:10958455-10958474 Msa0007670:intron 35.0%
CCAACTAAATCCAAAGAAAC+AGG - chr1_1:10958468-10958487 None:intergenic 35.0%
! CCTGTTTCTTTGGATTTAGT+TGG + chr1_1:10958465-10958484 Msa0007670:intron 35.0%
!! TAGTTGGAACTTGTTGAACT+AGG + chr1_1:10958481-10958500 Msa0007670:intron 35.0%
AAAGTTCATCTAATCACGCA+AGG + chr1_1:10958554-10958573 Msa0007670:intron 35.0%
ATCTCGAATGGTGTTTCTTA+GGG + chr1_1:10958775-10958794 Msa0007670:intron 35.0%
CGACTGTCATAAAATTTAGC+TGG + chr1_1:10958999-10959018 Msa0007670:intron 35.0%
AACGCATTTCAGTATTTGAG+TGG - chr1_1:10959038-10959057 None:intergenic 35.0%
AACTTGGGGAAGAATTTCTA+TGG + chr1_1:10959233-10959252 Msa0007670:CDS 35.0%
AAGAATTTCTATGGTTGAGG+CGG + chr1_1:10959242-10959261 Msa0007670:CDS 35.0%
CAACCATAAACCATTCATTG+AGG + chr1_1:10959877-10959896 Msa0007670:intron 35.0%
GCTGACCAAGTTATTATTGT+CGG + chr1_1:10960114-10960133 Msa0007670:intron 35.0%
AATTTATCAGCCGAATATGG+AGG + chr1_1:10960229-10960248 Msa0007670:intron 35.0%
ATTTATCAGCCGAATATGGA+GGG + chr1_1:10960230-10960249 Msa0007670:intron 35.0%
TATGTTTAGATGCTTGATCC+AGG + chr1_1:10960377-10960396 Msa0007670:intron 35.0%
CTAAGCTTACAAGGATAACT+AGG - chr1_1:10960849-10960868 None:intergenic 35.0%
! GCCTTGTTGGTCTATATATA+AGG + chr1_1:10960935-10960954 Msa0007670:intron 35.0%
TATGCACTAAAAAAGAGGTC+CGG - chr1_1:10961241-10961260 None:intergenic 35.0%
!!! TTCCTCTAGTTTTGGTTCTA+AGG + chr1_1:10961418-10961437 Msa0007670:intron 35.0%
! GATCTTGTTATCTATTTGCC+CGG + chr1_1:10961568-10961587 Msa0007670:CDS 35.0%
TTTGGTGAATCAACACCATA+TGG + chr1_1:10961679-10961698 Msa0007670:three_prime_UTR 35.0%
CACATACGACATAGCTTATT+TGG + chr1_1:10961721-10961740 Msa0007670:three_prime_UTR 35.0%
GCTTGTCTGGTTAGATAATA+TGG + chr1_1:10961834-10961853 Msa0007670:three_prime_UTR 35.0%
!! TTCTGAGGGTTGAAAAGTTT+TGG + chr1_1:10961919-10961938 Msa0007670:three_prime_UTR 35.0%
TATTCTTGATAGGCTAGAGA+GGG + chr1_1:10961942-10961961 Msa0007670:three_prime_UTR 35.0%
! AGATAATTGCTTTGAGCGTA+TGG + chr1_1:10962103-10962122 Msa0007670:three_prime_UTR 35.0%
TGGTATCAACGTTCTCCAAT+TGG + chr1_1:10956102-10956121 Msa0007670:five_prime_UTR 40.0%
GATCCCTGCATTCAATTCAT+AGG + chr1_1:10956223-10956242 Msa0007670:five_prime_UTR 40.0%
! TCGGAAATTGCATGCTGATT+AGG + chr1_1:10956445-10956464 Msa0007670:intron 40.0%
TGTGTGGTATGTTTGGATTG+AGG + chr1_1:10956641-10956660 Msa0007670:intron 40.0%
ATATCGTCGATCTAGTTGAG+TGG - chr1_1:10956801-10956820 None:intergenic 40.0%
! GAGACTGAATTGATAGCAAG+TGG + chr1_1:10956890-10956909 Msa0007670:intron 40.0%
ATGCGTATGGAGAAGTTGAA+GGG + chr1_1:10957309-10957328 Msa0007670:five_prime_UTR 40.0%
CAAACTTAAAGAGGCCTACT+TGG + chr1_1:10957417-10957436 Msa0007670:CDS 40.0%
CTGCTTATATTTATCCGCTG+CGG + chr1_1:10957480-10957499 Msa0007670:CDS 40.0%
TAAACAAAGAACACGTCGAG+GGG - chr1_1:10957511-10957530 None:intergenic 40.0%
GTTAAACAAAGAACACGTCG+AGG - chr1_1:10957513-10957532 None:intergenic 40.0%
TCTCAAGGTTGTAGTGTTGT+TGG + chr1_1:10957533-10957552 Msa0007670:CDS 40.0%
CCGAGATTCAGTCTCTTTAT+CGG - chr1_1:10957612-10957631 None:intergenic 40.0%
CCGATAAAGAGACTGAATCT+CGG + chr1_1:10957609-10957628 Msa0007670:CDS 40.0%
CGATAAAGAGACTGAATCTC+GGG + chr1_1:10957610-10957629 Msa0007670:CDS 40.0%
GTACTATGCTGTTCAAAGCA+CGG + chr1_1:10957655-10957674 Msa0007670:CDS 40.0%
!! CATTACCTTTTGAGAAGCTC+TGG + chr1_1:10957714-10957733 Msa0007670:CDS 40.0%
! AAGAGTGTGGTCTATGGAAT+AGG - chr1_1:10957767-10957786 None:intergenic 40.0%
AGACGTGAAATCTAAGAGTG+TGG - chr1_1:10957780-10957799 None:intergenic 40.0%
AAATAGGGGCTGACATGTAT+CGG - chr1_1:10958047-10958066 None:intergenic 40.0%
TGTCTCGTCCAACAAAATAG+GGG - chr1_1:10958061-10958080 None:intergenic 40.0%
GATGTCTCGTCCAACAAAAT+AGG - chr1_1:10958063-10958082 None:intergenic 40.0%
ACAGGGAAATTTCTGCTCAA+AGG - chr1_1:10958450-10958469 None:intergenic 40.0%
!! GCTTTGAAGAACATCTCGAA+TGG + chr1_1:10958763-10958782 Msa0007670:intron 40.0%
CATCTCGAATGGTGTTTCTT+AGG + chr1_1:10958774-10958793 Msa0007670:intron 40.0%
GGGAAGAATTTCTATGGTTG+AGG + chr1_1:10959239-10959258 Msa0007670:CDS 40.0%
GGTATACAGCTGAAGCAAAA+AGG - chr1_1:10959548-10959567 None:intergenic 40.0%
!! CAAGTGTCAGCTTTATTGAC+AGG + chr1_1:10959609-10959628 Msa0007670:CDS 40.0%
GTTGCCTGAAGTAGAAAAGA+AGG + chr1_1:10959818-10959837 Msa0007670:CDS 40.0%
TACAGTGGTTCTCGATGAAA+CGG + chr1_1:10959992-10960011 Msa0007670:intron 40.0%
ATACGCCAAACAAGTTAGCA+GGG - chr1_1:10960360-10960379 None:intergenic 40.0%
! ACATATGTTGATTGGTCCGA+AGG + chr1_1:10960422-10960441 Msa0007670:CDS 40.0%
! TTGATTGGTCCGAAGGAAAA+TGG + chr1_1:10960429-10960448 Msa0007670:CDS 40.0%
GGTAGAATGTTTAGACTTCC+TGG - chr1_1:10960639-10960658 None:intergenic 40.0%
GCTTACAAGGATAACTAGGA+AGG - chr1_1:10960845-10960864 None:intergenic 40.0%
AAACTCAGCAAGACTAACTG+AGG - chr1_1:10960897-10960916 None:intergenic 40.0%
GACCTTAGAACCAAAACTAG+AGG - chr1_1:10961423-10961442 None:intergenic 40.0%
ACATGTCTTACAGAGAACAG+TGG + chr1_1:10961512-10961531 Msa0007670:intron 40.0%
ATTGCACCTTGCGAGTTAAA+TGG + chr1_1:10961537-10961556 Msa0007670:CDS 40.0%
TTTGAGCCATTTAACTCGCA+AGG - chr1_1:10961546-10961565 None:intergenic 40.0%
!! ATTTGCCCGGAAGTTTTATC+CGG + chr1_1:10961581-10961600 Msa0007670:CDS 40.0%
AGTTTCCGGATAAAACTTCC+GGG - chr1_1:10961589-10961608 None:intergenic 40.0%
GAGTTTCCGGATAAAACTTC+CGG - chr1_1:10961590-10961609 None:intergenic 40.0%
TATGTGCGAAAGATGGTTCT+GGG - chr1_1:10961707-10961726 None:intergenic 40.0%
TATGTCGTATGTGCGAAAGA+TGG - chr1_1:10961714-10961733 None:intergenic 40.0%
TTATTTGGAGAAGTTCCCGA+CGG + chr1_1:10961736-10961755 Msa0007670:three_prime_UTR 40.0%
GTATTCTTGATAGGCTAGAG+AGG + chr1_1:10961941-10961960 Msa0007670:three_prime_UTR 40.0%
! GTTGCTGTGCTACTAAGTTC+AGG - chr1_1:10955957-10955976 None:intergenic 45.0%
GAGAACGTTGATACCAGTGT+AGG - chr1_1:10956098-10956117 None:intergenic 45.0%
! GTGTCGTGTTTGGATTGGAT+CGG - chr1_1:10956146-10956165 None:intergenic 45.0%
!! AACGTTGGTGTTGTGTGTTG+GGG - chr1_1:10956172-10956191 None:intergenic 45.0%
!! CAACGTTGGTGTTGTGTGTT+GGG - chr1_1:10956173-10956192 None:intergenic 45.0%
!! TCAACGTTGGTGTTGTGTGT+TGG - chr1_1:10956174-10956193 None:intergenic 45.0%
!! GTCTCTAGGATACTCTCAGA+AGG - chr1_1:10956875-10956894 None:intergenic 45.0%
TGAGAGCTACCTAACAAGTC+AGG + chr1_1:10957059-10957078 Msa0007670:intron 45.0%
GAGAGCTACCTAACAAGTCA+GGG + chr1_1:10957060-10957079 Msa0007670:intron 45.0%
CAAGTCAGGGACTAATTTGG+TGG + chr1_1:10957073-10957092 Msa0007670:intron 45.0%
GATGCGTATGGAGAAGTTGA+AGG + chr1_1:10957308-10957327 Msa0007670:five_prime_UTR 45.0%
TGCGTATGGAGAAGTTGAAG+GGG + chr1_1:10957310-10957329 Msa0007670:five_prime_UTR 45.0%
AAACAAAGAACACGTCGAGG+GGG - chr1_1:10957510-10957529 None:intergenic 45.0%
! CAAGGTTGTAGTGTTGTTGG+TGG + chr1_1:10957536-10957555 Msa0007670:CDS 45.0%
GTATGCCAGAGCTTCTCAAA+AGG - chr1_1:10957722-10957741 None:intergenic 45.0%
AAACTAATGCAGGGCCATGA+AGG + chr1_1:10957984-10958003 Msa0007670:intron 45.0%
! CATGTCAGCCCCTATTTTGT+TGG + chr1_1:10958050-10958069 Msa0007670:CDS 45.0%
TGATGAGCTATACCCCATAC+CGG - chr1_1:10958095-10958114 None:intergenic 45.0%
! ATCTAATCACGCAAGGCACT+AGG + chr1_1:10958561-10958580 Msa0007670:intron 45.0%
! TCTAATCACGCAAGGCACTA+GGG + chr1_1:10958562-10958581 Msa0007670:intron 45.0%
AACTTCTGCAGCATCTCCAA+TGG - chr1_1:10959074-10959093 None:intergenic 45.0%
TCTTAGTAGCTAGTGCCAAC+TGG + chr1_1:10959191-10959210 Msa0007670:intron 45.0%
TTTCTATGGTTGAGGCGGAA+AGG + chr1_1:10959247-10959266 Msa0007670:CDS 45.0%
GGTATACAGCTGAAGCAGAA+AGG - chr1_1:10959414-10959433 None:intergenic 45.0%
ACAAAATCAAAGCGGCTCAC+TGG - chr1_1:10959435-10959454 None:intergenic 45.0%
! ACATACCTGCCATTTCCATG+CGG - chr1_1:10959789-10959808 None:intergenic 45.0%
! GGATTTTCGAAAGGGTTCAC+AGG + chr1_1:10959839-10959858 Msa0007670:CDS 45.0%
GCAGCACGCTCTAATAGTTA+TGG + chr1_1:10960014-10960033 Msa0007670:intron 45.0%
TTGCGGTTTCCCTCCATATT+CGG - chr1_1:10960242-10960261 None:intergenic 45.0%
GCTCATCAGAATAGCAGTTG+CGG - chr1_1:10960259-10960278 None:intergenic 45.0%
!! TCTCTCCCTGCTAACTTGTT+TGG + chr1_1:10960352-10960371 Msa0007670:intron 45.0%
CATACGCCAAACAAGTTAGC+AGG - chr1_1:10960361-10960380 None:intergenic 45.0%
GTTTAGATGCTTGATCCAGG+CGG + chr1_1:10960380-10960399 Msa0007670:intron 45.0%
GGTCGGTGACATATGTTGAT+TGG + chr1_1:10960414-10960433 Msa0007670:CDS 45.0%
!!! CCTAGGATGCCATTTTCCTT+CGG - chr1_1:10960441-10960460 None:intergenic 45.0%
AATGGCATCCTAGGTCATTC+AGG + chr1_1:10960447-10960466 Msa0007670:CDS 45.0%
ATGGCATCCTAGGTCATTCA+GGG + chr1_1:10960448-10960467 Msa0007670:CDS 45.0%
ACAAGGCTAACTAACTACGC+TGG - chr1_1:10960922-10960941 None:intergenic 45.0%
!! GCGTAGTTAGTTAGCCTTGT+TGG + chr1_1:10960922-10960941 Msa0007670:intron 45.0%
AGATCACGGGATCATGAAGT+TGG - chr1_1:10961023-10961042 None:intergenic 45.0%
AAAAAAGAGGTCCGGCTAAC+AGG - chr1_1:10961233-10961252 None:intergenic 45.0%
! ATGTGCGAAAGATGGTTCTG+GGG - chr1_1:10961706-10961725 None:intergenic 45.0%
GTATGTGCGAAAGATGGTTC+TGG - chr1_1:10961708-10961727 None:intergenic 45.0%
TTTCCTGGGGCTTGATGAAA+TGG + chr1_1:10961802-10961821 Msa0007670:three_prime_UTR 45.0%
ATGGAACTTCTGAGCTTGTC+TGG + chr1_1:10961821-10961840 Msa0007670:three_prime_UTR 45.0%
!!! AAAATTATATTTTACTATTA+AGG - chr1_1:10958810-10958829 None:intergenic 5.0%
!!! TTAATAGTAAAATATAATTT+TGG + chr1_1:10958809-10958828 Msa0007670:intron 5.0%
!! ACATAAAAATAAATAAATAA+AGG + chr1_1:10959119-10959138 Msa0007670:intron 5.0%
! TCGTGTTTGGATTGGATCGG+TGG - chr1_1:10956143-10956162 None:intergenic 50.0%
!! ACGTTGGTGTTGTGTGTTGG+GGG - chr1_1:10956171-10956190 None:intergenic 50.0%
GGGGCGTAATCGATAGAAAG+TGG + chr1_1:10956988-10957007 Msa0007670:intron 50.0%
GTGAATTCCCGAGTCTGTAC+GGG - chr1_1:10957590-10957609 None:intergenic 50.0%
GGTGAATTCCCGAGTCTGTA+CGG - chr1_1:10957591-10957610 None:intergenic 50.0%
GCTCTGGCATACATTCTTCC+AGG + chr1_1:10957730-10957749 Msa0007670:CDS 50.0%
ACGAGACATCCACAGTGAAC+CGG + chr1_1:10958073-10958092 Msa0007670:CDS 50.0%
ACATCCACAGTGAACCGGTA+TGG + chr1_1:10958078-10958097 Msa0007670:intron 50.0%
CATCCACAGTGAACCGGTAT+GGG + chr1_1:10958079-10958098 Msa0007670:intron 50.0%
ATCCACAGTGAACCGGTATG+GGG + chr1_1:10958080-10958099 Msa0007670:intron 50.0%
! TGAGGCGGAAAGGAGACTTT+TGG + chr1_1:10959257-10959276 Msa0007670:CDS 50.0%
ACAAAATCAAAGCGGCGCAC+TGG - chr1_1:10959569-10959588 None:intergenic 50.0%
AGTTAGCAGGGAGAGAGAGA+TGG - chr1_1:10960348-10960367 None:intergenic 50.0%
ATCCAGGCGGAATCGCAAAT+TGG + chr1_1:10960393-10960412 Msa0007670:CDS 50.0%
AGGCGGAATCGCAAATTGGT+CGG + chr1_1:10960397-10960416 Msa0007670:CDS 50.0%
CCGAAGGAAAATGGCATCCT+AGG + chr1_1:10960438-10960457 Msa0007670:CDS 50.0%
!! AGATGGTTCTGGGGACCATA+TGG - chr1_1:10961697-10961716 None:intergenic 50.0%
GTTCCATTTCATCAAGCCCC+AGG - chr1_1:10961808-10961827 None:intergenic 50.0%
TCTTGATAGGCTAGAGAGGG+AGG + chr1_1:10961945-10961964 Msa0007670:three_prime_UTR 50.0%
CTTGATAGGCTAGAGAGGGA+GGG + chr1_1:10961946-10961965 Msa0007670:three_prime_UTR 50.0%
AGAGAGGGAGGGATAAGGTT+TGG + chr1_1:10961957-10961976 Msa0007670:three_prime_UTR 50.0%
!! GGGTGGTGTCGTGTTTGGAT+TGG - chr1_1:10956151-10956170 None:intergenic 55.0%
!! TTGGTGTTGTGTGTTGGGGG+TGG - chr1_1:10956168-10956187 None:intergenic 55.0%
AATTCCCGAGTCTGTACGGG+TGG - chr1_1:10957587-10957606 None:intergenic 55.0%
!! TACCCCATACCGGTTCACTG+TGG - chr1_1:10958085-10958104 None:intergenic 55.0%
TATGTGGATACCGGTCCGCA+TGG + chr1_1:10959771-10959790 Msa0007670:CDS 55.0%
GATACCGGTCCGCATGGAAA+TGG + chr1_1:10959777-10959796 Msa0007670:CDS 55.0%
GACCAATTTGCGATTCCGCC+TGG - chr1_1:10960398-10960417 None:intergenic 55.0%
TCACGAGCCCTGAATGACCT+AGG - chr1_1:10960458-10960477 None:intergenic 55.0%
!! ATCTAGGGGCACCTGTTAGC+CGG + chr1_1:10961219-10961238 Msa0007670:intron 55.0%
TATCCATCAGCCTCAGCCGT+CGG - chr1_1:10961755-10961774 None:intergenic 55.0%
AGGCTAGAGAGGGAGGGATA+AGG + chr1_1:10961952-10961971 Msa0007670:three_prime_UTR 55.0%
!! GTTGGGGGTGGTGTCGTGTT+TGG - chr1_1:10956156-10956175 None:intergenic 60.0%
AGCCACCACCCGTACAGACT+CGG + chr1_1:10957579-10957598 Msa0007670:CDS 60.0%
! CCTGCCATTTCCATGCGGAC+CGG - chr1_1:10959784-10959803 None:intergenic 60.0%
ATCCATCAGCCTCAGCCGTC+GGG - chr1_1:10961754-10961773 None:intergenic 60.0%
GCCACCACCCGTACAGACTC+GGG + chr1_1:10957580-10957599 Msa0007670:CDS 65.0%
TCCCGAGTCTGTACGGGTGG+TGG - chr1_1:10957584-10957603 None:intergenic 65.0%
CCGGTCCGCATGGAAATGGC+AGG + chr1_1:10959781-10959800 Msa0007670:CDS 65.0%
GGAGAAGTTCCCGACGGCTG+AGG + chr1_1:10961742-10961761 Msa0007670:three_prime_UTR 65.0%
TTCCCGACGGCTGAGGCTGA+TGG + chr1_1:10961749-10961768 Msa0007670:three_prime_UTR 65.0%
GTCGAGGGGGAGCTCCGCAG+CGG - chr1_1:10957497-10957516 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 10955943 10962160 10955943 ID=Msa0007670;Name=Msa0007670
chr1_1 mRNA 10955943 10962160 10955943 ID=Msa0007670-mRNA-1;Parent=Msa0007670;Name=Msa0007670-mRNA-1;_AED=0.20;_eAED=0.20;_QI=376|0.88|1|1|0.77|0.8|10|507|373
chr1_1 exon 10955943 10956244 10955943 ID=Msa0007670-mRNA-1:exon:4054;Parent=Msa0007670-mRNA-1
chr1_1 exon 10957273 10957751 10957273 ID=Msa0007670-mRNA-1:exon:4055;Parent=Msa0007670-mRNA-1
chr1_1 exon 10957996 10958094 10957996 ID=Msa0007670-mRNA-1:exon:4056;Parent=Msa0007670-mRNA-1
chr1_1 exon 10959231 10959331 10959231 ID=Msa0007670-mRNA-1:exon:4057;Parent=Msa0007670-mRNA-1
chr1_1 exon 10959559 10959630 10959559 ID=Msa0007670-mRNA-1:exon:4058;Parent=Msa0007670-mRNA-1
chr1_1 exon 10959770 10959860 10959770 ID=Msa0007670-mRNA-1:exon:4059;Parent=Msa0007670-mRNA-1
chr1_1 exon 10960239 10960301 10960239 ID=Msa0007670-mRNA-1:exon:4060;Parent=Msa0007670-mRNA-1
chr1_1 exon 10960386 10960508 10960386 ID=Msa0007670-mRNA-1:exon:4061;Parent=Msa0007670-mRNA-1
chr1_1 exon 10961361 10961399 10961361 ID=Msa0007670-mRNA-1:exon:4062;Parent=Msa0007670-mRNA-1
chr1_1 exon 10961525 10962160 10961525 ID=Msa0007670-mRNA-1:exon:4063;Parent=Msa0007670-mRNA-1
chr1_1 five_prime_UTR 10955943 10956244 10955943 ID=Msa0007670-mRNA-1:five_prime_utr;Parent=Msa0007670-mRNA-1
chr1_1 five_prime_UTR 10957273 10957346 10957273 ID=Msa0007670-mRNA-1:five_prime_utr;Parent=Msa0007670-mRNA-1
chr1_1 CDS 10957347 10957751 10957347 ID=Msa0007670-mRNA-1:cds;Parent=Msa0007670-mRNA-1
chr1_1 CDS 10957996 10958094 10957996 ID=Msa0007670-mRNA-1:cds;Parent=Msa0007670-mRNA-1
chr1_1 CDS 10959231 10959331 10959231 ID=Msa0007670-mRNA-1:cds;Parent=Msa0007670-mRNA-1
chr1_1 CDS 10959559 10959630 10959559 ID=Msa0007670-mRNA-1:cds;Parent=Msa0007670-mRNA-1
chr1_1 CDS 10959770 10959860 10959770 ID=Msa0007670-mRNA-1:cds;Parent=Msa0007670-mRNA-1
chr1_1 CDS 10960239 10960301 10960239 ID=Msa0007670-mRNA-1:cds;Parent=Msa0007670-mRNA-1
chr1_1 CDS 10960386 10960508 10960386 ID=Msa0007670-mRNA-1:cds;Parent=Msa0007670-mRNA-1
chr1_1 CDS 10961361 10961399 10961361 ID=Msa0007670-mRNA-1:cds;Parent=Msa0007670-mRNA-1
chr1_1 CDS 10961525 10961653 10961525 ID=Msa0007670-mRNA-1:cds;Parent=Msa0007670-mRNA-1
chr1_1 three_prime_UTR 10961654 10962160 10961654 ID=Msa0007670-mRNA-1:three_prime_utr;Parent=Msa0007670-mRNA-1
Gene Sequence

>Msa0007670

ATGAAGAAAGCATTTGCATGGCCACAATTCACAAAAAATCTTCTGATCATGGTTGGATCAAGACACAGATCAAACTTAAAGAGGCCTACTTGGATTATCGTTTTAGTGTTCATAGTCTGCTTTTTTCTGATTGCTGCTTATATTTATCCGCTGCGGAGCTCCCCCTCGACGTGTTCTTTGTTTAACTCTCAAGGTTGTAGTGTTGTTGGTGGTGTTGATCGTACATTTAATAAGCCACCACCCGTACAGACTCGGGAATTCACCGATAAAGAGACTGAATCTCGGGTTGTTATTAACGAAATTCTTAAGTACTATGCTGTTCAAAGCACGGTCCCTAAAGTTGCTTTTATGTTTTTGACTCCGGGATCATTACCTTTTGAGAAGCTCTGGCATACATTCTTCCAGGGCCATGAAGGAAAATTTTCTGTCTATGTACATGCATCAAAGGAAAAACCGATACATGTCAGCCCCTATTTTGTTGGACGAGACATCCACAGTGAACCGGTAACTTGGGGAAGAATTTCTATGGTTGAGGCGGAAAGGAGACTTTTGGCAAATGCACTTTTAGACCCTGATAACCAACATTTTGTATTGTTGTCTGATAGCTGTATACCAGTGCGCCGCTTTGATTTTGTGTACAACTACTTGTTATTAACAAGTGTCAGCTTTATTGACAGCTATGTGGATACCGGTCCGCATGGAAATGGCAGGTATGTAGAACGCATGTTGCCTGAAGTAGAAAAGAAGGATTTTCGAAAGGGTTCACAGCCGAATATGGAGGGAAACCGCAACTGCTATTCTGATGAGCATTACTTGCCAACCTTTTTTAATATGCTTGATCCAGGCGGAATCGCAAATTGGTCGGTGACATATGTTGATTGGTCCGAAGGAAAATGGCATCCTAGGTCATTCAGGGCTCGTGATATTACTTATAAACTCATGAAAAAAATAGCGTACATTGATGAAAGTCCACATTATACAAGTGATGCAAAGAGAACAGTGGTGATTGCACCTTGCGAGTTAAATGGCTCAAAACGATCTTGTTATCTATTTGCCCGGAAGTTTTATCCGGAAACTCAAGATAAATTGATTCACCTTTTCTCGAATTCAACTACATTCTAA
Protein sequence

>Msa0007670

MKKAFAWPQFTKNLLIMVGSRHRSNLKRPTWIIVLVFIVCFFLIAAYIYPLRSSPSTCSLFNSQGCSVVGGVDRTFNKPPPVQTREFTDKETESRVVINEILKYYAVQSTVPKVAFMFLTPGSLPFEKLWHTFFQGHEGKFSVYVHASKEKPIHVSPYFVGRDIHSEPVTWGRISMVEAERRLLANALLDPDNQHFVLLSDSCIPVRRFDFVYNYLLLTSVSFIDSYVDTGPHGNGRYVERMLPEVEKKDFRKGSQPNMEGNRNCYSDEHYLPTFFNMLDPGGIANWSVTYVDWSEGKWHPRSFRARDITYKLMKKIAYIDESPHYTSDAKRTVVIAPCELNGSKRSCYLFARKFYPETQDKLIHLFSNSTTF*