Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0056140 | XP_013465739.1 | 97.250 | 400 | 10 | 1 | 1 | 400 | 1 | 399 | 0.0 | 813 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0056140 | sp|Q65XS5|BC10_ORYSJ | 36.859 | 312 | 158 | 10 | 113 | 393 | 85 | 388 | 7.05e-48 | 171 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0056140 | A0A072VDW2 | 97.250 | 400 | 10 | 1 | 1 | 400 | 1 | 399 | 0.0 | 813 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006700 | Msa0056140 | -0.807937 | 3.959377e-50 | -8.615850e-47 |
| Msa0007580 | Msa0056140 | 0.875422 | 3.120223e-68 | -8.615850e-47 |
| Msa0007670 | Msa0056140 | 0.826838 | 2.178160e-54 | -8.615850e-47 |
| Msa0008850 | Msa0056140 | -0.809580 | 1.763629e-50 | -8.615850e-47 |
| Msa0020630 | Msa0056140 | -0.802949 | 4.401349e-49 | -8.615850e-47 |
| Msa0043940 | Msa0056140 | -0.805800 | 1.120734e-49 | -8.615850e-47 |
| Msa0044240 | Msa0056140 | 0.805566 | 1.254685e-49 | -8.615850e-47 |
| Msa0044710 | Msa0056140 | -0.812781 | 3.567841e-51 | -8.615850e-47 |
| Msa0046660 | Msa0056140 | 0.801785 | 7.641649e-49 | -8.615850e-47 |
| Msa0047470 | Msa0056140 | -0.845541 | 3.807303e-59 | -8.615850e-47 |
| Msa0050720 | Msa0056140 | -0.826246 | 3.013899e-54 | -8.615850e-47 |
| Msa0050770 | Msa0056140 | -0.831644 | 1.485569e-55 | -8.615850e-47 |
| Msa0055280 | Msa0056140 | -0.804988 | 1.658037e-49 | -8.615850e-47 |
| Msa0056140 | Msa0056170 | 0.991091 | 7.634850e-186 | -8.615850e-47 |
| Msa0056140 | Msa0060350 | -0.814822 | 1.266687e-51 | -8.615850e-47 |
| Msa0056140 | Msa0061600 | 0.816104 | 6.567089e-52 | -8.615850e-47 |
| Msa0056140 | Msa0064550 | -0.801599 | 8.344831e-49 | -8.615850e-47 |
| Msa0056140 | Msa0071910 | 0.805929 | 1.052815e-49 | -8.615850e-47 |
| Msa0056140 | Msa0079250 | -0.805194 | 1.501511e-49 | -8.615850e-47 |
| Msa0056140 | Msa0083160 | -0.807452 | 5.020885e-50 | -8.615850e-47 |
| Msa0056140 | Msa0084680 | -0.835548 | 1.573958e-56 | -8.615850e-47 |
| Msa0056140 | Msa0089080 | 0.806289 | 8.841772e-50 | -8.615850e-47 |
| Msa0056140 | Msa0090770 | 0.801387 | 9.221353e-49 | -8.615850e-47 |
| Msa0056140 | Msa0091480 | -0.811094 | 8.314412e-51 | -8.615850e-47 |
| Msa0056140 | Msa0092710 | -0.809485 | 1.848293e-50 | -8.615850e-47 |
| Msa0056140 | Msa0101060 | -0.811748 | 5.993372e-51 | -8.615850e-47 |
| Msa0056140 | Msa0103160 | -0.803118 | 4.061161e-49 | -8.615850e-47 |
| Msa0056140 | Msa0109490 | -0.808668 | 2.765818e-50 | -8.615850e-47 |
| Msa0056140 | Msa0130800 | -0.824481 | 7.887379e-54 | -8.615850e-47 |
| Msa0056140 | Msa0138390 | 0.801627 | 8.236621e-49 | -8.615850e-47 |
| Msa0056140 | Msa0141550 | -0.809298 | 2.028130e-50 | -8.615850e-47 |
| Msa0056140 | Msa0143970 | -0.816502 | 5.350070e-52 | -8.615850e-47 |
| Msa0056140 | Msa0147240 | -0.809108 | 2.226707e-50 | -8.615850e-47 |
| Msa0056140 | Msa0159750 | -0.805062 | 1.600116e-49 | -8.615850e-47 |
| Msa0056140 | Msa0164360 | -0.819356 | 1.212417e-52 | -8.615850e-47 |
| Msa0056140 | Msa0175530 | -0.808496 | 3.010358e-50 | -8.615850e-47 |
| Msa0056140 | Msa0178940 | -0.813047 | 3.118553e-51 | -8.615850e-47 |
| Msa0056140 | Msa0181020 | -0.814738 | 1.321929e-51 | -8.615850e-47 |
| Msa0056140 | Msa0182640 | -0.804485 | 2.112061e-49 | -8.615850e-47 |
| Msa0056140 | Msa0185390 | -0.804540 | 2.056818e-49 | -8.615850e-47 |
| Msa0056140 | Msa0193760 | -0.834020 | 3.814830e-56 | -8.615850e-47 |
| Msa0056140 | Msa0197940 | 0.824370 | 8.376082e-54 | -8.615850e-47 |
| Msa0056140 | Msa0198440 | -0.802637 | 5.104856e-49 | -8.615850e-47 |
| Msa0056140 | Msa0199730 | -0.812327 | 4.483403e-51 | -8.615850e-47 |
| Msa0056140 | Msa0206940 | -0.825602 | 4.286981e-54 | -8.615850e-47 |
| Msa0056140 | Msa0208630 | -0.824262 | 8.878044e-54 | -8.615850e-47 |
| Msa0056140 | Msa0235550 | -0.827499 | 1.512982e-54 | -8.615850e-47 |
| Msa0056140 | Msa0240450 | 0.801564 | 8.485204e-49 | -8.615850e-47 |
| Msa0056140 | Msa0242290 | -0.807002 | 6.252906e-50 | -8.615850e-47 |
| Msa0056140 | Msa0252180 | -0.812353 | 4.424878e-51 | -8.615850e-47 |
| Msa0056140 | Msa0265980 | 0.818889 | 1.548758e-52 | -8.615850e-47 |
| Msa0056140 | Msa0274520 | -0.838945 | 2.126319e-57 | -8.615850e-47 |
| Msa0056140 | Msa0277530 | -0.808671 | 2.762067e-50 | -8.615850e-47 |
| Msa0056140 | Msa0281940 | -0.800668 | 1.293523e-48 | -8.615850e-47 |
| Msa0056140 | Msa0288240 | -0.817629 | 2.985864e-52 | -8.615850e-47 |
| Msa0056140 | Msa0288330 | -0.803253 | 3.808127e-49 | -8.615850e-47 |
| Msa0056140 | Msa0326670 | -0.834145 | 3.550645e-56 | -8.615850e-47 |
| Msa0056140 | Msa0352510 | -0.802914 | 4.475236e-49 | -8.615850e-47 |
| Msa0056140 | Msa0354390 | -0.812468 | 4.176185e-51 | -8.615850e-47 |
| Msa0056140 | Msa0369780 | -0.845416 | 4.116181e-59 | -8.615850e-47 |
| Msa0056140 | Msa0380430 | -0.800282 | 1.550828e-48 | -8.615850e-47 |
| Msa0056140 | Msa0387790 | -0.818572 | 1.828132e-52 | -8.615850e-47 |
| Msa0056140 | Msa0401340 | -0.810778 | 9.730625e-51 | -8.615850e-47 |
| Msa0056140 | Msa0413740 | -0.805945 | 1.044879e-49 | -8.615850e-47 |
| Msa0056140 | Msa0414070 | -0.813514 | 2.462454e-51 | -8.615850e-47 |
| Msa0056140 | Msa0417150 | -0.835386 | 1.729088e-56 | -8.615850e-47 |
| Msa0056140 | Msa0431520 | -0.848342 | 6.513768e-60 | -8.615850e-47 |
| Msa0056140 | Msa0431830 | -0.834109 | 3.625040e-56 | -8.615850e-47 |
| Msa0056140 | Msa0432720 | -0.802527 | 5.378456e-49 | -8.615850e-47 |
| Msa0056140 | Msa0445360 | -0.802769 | 4.793505e-49 | -8.615850e-47 |
| Msa0056140 | Msa0448080 | -0.813596 | 2.363163e-51 | -8.615850e-47 |
| Msa0056140 | Msa0448120 | -0.822563 | 2.215508e-53 | -8.615850e-47 |
| Msa0056140 | Msa0455260 | -0.806284 | 8.865024e-50 | -8.615850e-47 |
| Msa0056140 | Msa0463990 | -0.813692 | 2.250218e-51 | -8.615850e-47 |
| Msa0056140 | Msa0467800 | -0.813162 | 2.942456e-51 | -8.615850e-47 |
| Msa0056140 | Msa0467880 | -0.816829 | 4.520465e-52 | -8.615850e-47 |
| Msa0056140 | Msa0505390 | -0.810001 | 1.432288e-50 | -8.615850e-47 |
| Msa0056140 | Msa0509540 | -0.849244 | 3.661390e-60 | -8.615850e-47 |
| Msa0056140 | Msa0512310 | -0.825386 | 4.821066e-54 | -8.615850e-47 |
| Msa0056140 | Msa0524050 | -0.830692 | 2.544397e-55 | -8.615850e-47 |
| Msa0056140 | Msa0524890 | 0.803098 | 4.099842e-49 | -8.615850e-47 |
| Msa0056140 | Msa0530930 | -0.815549 | 8.731574e-52 | -8.615850e-47 |
| Msa0056140 | Msa0530950 | -0.803416 | 3.523194e-49 | -8.615850e-47 |
| Msa0056140 | Msa0542040 | -0.813566 | 2.398504e-51 | -8.615850e-47 |
| Msa0056140 | Msa0546380 | -0.802273 | 6.066939e-49 | -8.615850e-47 |
| Msa0056140 | Msa0549740 | -0.813879 | 2.047230e-51 | -8.615850e-47 |
| Msa0056140 | Msa0577230 | -0.814895 | 1.220322e-51 | -8.615850e-47 |
| Msa0056140 | Msa0578070 | 0.808657 | 2.780955e-50 | -8.615850e-47 |
| Msa0056140 | Msa0600820 | -0.813012 | 3.175025e-51 | -8.615850e-47 |
| Msa0056140 | Msa0609990 | -0.801636 | 8.201310e-49 | -8.615850e-47 |
| Msa0056140 | Msa0617370 | -0.811051 | 8.493521e-51 | -8.615850e-47 |
| Msa0056140 | Msa0620640 | -0.803941 | 2.741196e-49 | -8.615850e-47 |
| Msa0056140 | Msa0639030 | -0.807588 | 4.697908e-50 | -8.615850e-47 |
| Msa0056140 | Msa0643000 | 0.836873 | 7.251073e-57 | -8.615850e-47 |
| Msa0056140 | Msa0647450 | 0.815293 | 9.956652e-52 | -8.615850e-47 |
| Msa0056140 | Msa0651400 | -0.852753 | 3.752781e-61 | -8.615850e-47 |
| Msa0056140 | Msa0655660 | 0.815629 | 8.380834e-52 | -8.615850e-47 |
| Msa0056140 | Msa0656270 | -0.815164 | 1.063519e-51 | -8.615850e-47 |
| Msa0056140 | Msa0659040 | -0.806298 | 8.803865e-50 | -8.615850e-47 |
| Msa0056140 | Msa0667970 | -0.803590 | 3.242614e-49 | -8.615850e-47 |
| Msa0056140 | Msa0690350 | -0.822526 | 2.259447e-53 | -8.615850e-47 |
| Msa0056140 | Msa0697600 | -0.803088 | 4.118308e-49 | -8.615850e-47 |
| Msa0056140 | Msa0700070 | -0.819372 | 1.202094e-52 | -8.615850e-47 |
| Msa0056140 | Msa0704220 | -0.817372 | 3.412221e-52 | -8.615850e-47 |
| Msa0056140 | Msa0714600 | -0.811066 | 8.429028e-51 | -8.615850e-47 |
| Msa0056140 | Msa0724050 | -0.836881 | 7.213600e-57 | -8.615850e-47 |
| Msa0056140 | Msa0726610 | -0.803105 | 4.085596e-49 | -8.615850e-47 |
| Msa0056140 | Msa0730180 | -0.804035 | 2.620053e-49 | -8.615850e-47 |
| Msa0056140 | Msa0733000 | -0.810747 | 9.884180e-51 | -8.615850e-47 |
| Msa0056140 | Msa0743640 | -0.805586 | 1.243077e-49 | -8.615850e-47 |
| Msa0056140 | Msa0750220 | -0.824948 | 6.120075e-54 | -8.615850e-47 |
| Msa0056140 | Msa0750380 | -0.807602 | 4.666308e-50 | -8.615850e-47 |
| Msa0056140 | Msa0752580 | -0.805033 | 1.622659e-49 | -8.615850e-47 |
| Msa0056140 | Msa0760890 | -0.803784 | 2.954566e-49 | -8.615850e-47 |
| Msa0056140 | Msa0763880 | -0.833797 | 4.338263e-56 | -8.615850e-47 |
| Msa0056140 | Msa0763910 | -0.820971 | 5.174158e-53 | -8.615850e-47 |
| Msa0056140 | Msa0769830 | -0.805095 | 1.574893e-49 | -8.615850e-47 |
| Msa0056140 | Msa0775260 | -0.838360 | 3.011959e-57 | -8.615850e-47 |
| Msa0056140 | Msa0787720 | -0.808860 | 2.517027e-50 | -8.615850e-47 |
| Msa0056140 | Msa0798950 | -0.807354 | 5.267488e-50 | -8.615850e-47 |
| Msa0056140 | Msa0830720 | -0.813888 | 2.037175e-51 | -8.615850e-47 |
| Msa0056140 | Msa0848360 | -0.803754 | 2.997047e-49 | -8.615850e-47 |
| Msa0056140 | Msa0848380 | -0.814623 | 1.401775e-51 | -8.615850e-47 |
| Msa0056140 | Msa0848760 | -0.802704 | 4.945360e-49 | -8.615850e-47 |
| Msa0056140 | Msa0851740 | -0.810568 | 1.080581e-50 | -8.615850e-47 |
| Msa0056140 | Msa0853170 | -0.842234 | 2.928356e-58 | -8.615850e-47 |
| Msa0056140 | Msa0863760 | -0.805538 | 1.271981e-49 | -8.615850e-47 |
| Msa0056140 | Msa0872660 | -0.815002 | 1.155657e-51 | -8.615850e-47 |
| Msa0056140 | Msa0890250 | -0.804531 | 2.065710e-49 | -8.615850e-47 |
| Msa0056140 | Msa0899700 | -0.802845 | 4.624097e-49 | -8.615850e-47 |
| Msa0056140 | Msa0909710 | -0.819445 | 1.157078e-52 | -8.615850e-47 |
| Msa0056140 | Msa0925160 | -0.805126 | 1.551780e-49 | -8.615850e-47 |
| Msa0056140 | Msa0934830 | -0.850738 | 1.398415e-60 | -8.615850e-47 |
| Msa0056140 | Msa0937940 | -0.843085 | 1.740863e-58 | -8.615850e-47 |
| Msa0056140 | Msa0950620 | -0.821466 | 3.978425e-53 | -8.615850e-47 |
| Msa0056140 | Msa0955260 | -0.803205 | 3.895575e-49 | -8.615850e-47 |
| Msa0056140 | Msa0964680 | -0.812076 | 5.086342e-51 | -8.615850e-47 |
| Msa0056140 | Msa0971860 | -0.842826 | 2.039644e-58 | -8.615850e-47 |
| Msa0056140 | Msa0975080 | -0.832210 | 1.076443e-55 | -8.615850e-47 |
| Msa0056140 | Msa0980440 | -0.803290 | 3.741841e-49 | -8.615850e-47 |
| Msa0056140 | Msa0981740 | -0.803967 | 2.707714e-49 | -8.615850e-47 |
| Msa0056140 | Msa1015060 | -0.828051 | 1.114209e-54 | -8.615850e-47 |
| Msa0056140 | Msa1016110 | -0.818265 | 2.144755e-52 | -8.615850e-47 |
| Msa0056140 | Msa1029430 | -0.817143 | 3.842983e-52 | -8.615850e-47 |
| Msa0056140 | Msa1038320 | -0.826815 | 2.205705e-54 | -8.615850e-47 |
| Msa0056140 | Msa1044040 | -0.800485 | 1.409662e-48 | -8.615850e-47 |
| Msa0056140 | Msa1055360 | -0.809156 | 2.175100e-50 | -8.615850e-47 |
| Msa0056140 | Msa1056640 | -0.809626 | 1.724604e-50 | -8.615850e-47 |
| Msa0056140 | Msa1072460 | 0.812456 | 4.202295e-51 | -8.615850e-47 |
| Msa0056140 | Msa1080460 | -0.817123 | 3.881585e-52 | -8.615850e-47 |
| Msa0056140 | Msa1122510 | -0.806775 | 6.982129e-50 | -8.615850e-47 |
| Msa0056140 | Msa1130650 | -0.806477 | 8.071966e-50 | -8.615850e-47 |
| Msa0056140 | Msa1141250 | 0.819409 | 1.179221e-52 | -8.615850e-47 |
| Msa0056140 | Msa1157730 | -0.817519 | 3.161505e-52 | -8.615850e-47 |
| Msa0056140 | Msa1166970 | -0.806744 | 7.089536e-50 | -8.615850e-47 |
| Msa0056140 | Msa1184580 | -0.825575 | 4.350632e-54 | -8.615850e-47 |
| Msa0056140 | Msa1198450 | -0.812340 | 4.454480e-51 | -8.615850e-47 |
| Msa0056140 | Msa1214900 | -0.805606 | 1.230586e-49 | -8.615850e-47 |
| Msa0056140 | Msa1222030 | 0.822670 | 2.092459e-53 | -8.615850e-47 |
| Msa0056140 | Msa1222580 | -0.810505 | 1.115092e-50 | -8.615850e-47 |
| Msa0056140 | Msa1223160 | 0.805602 | 1.233488e-49 | -8.615850e-47 |
| Msa0056140 | Msa1236640 | 0.812369 | 4.390066e-51 | -8.615850e-47 |
| Msa0056140 | Msa1238700 | -0.850737 | 1.399556e-60 | -8.615850e-47 |
| Msa0056140 | Msa1252070 | -0.851426 | 8.945636e-61 | -8.615850e-47 |
| Msa0056140 | Msa1262310 | -0.816356 | 5.768467e-52 | -8.615850e-47 |
| Msa0056140 | Msa1272130 | -0.803566 | 3.278919e-49 | -8.615850e-47 |
| Msa0056140 | Msa1280130 | -0.816754 | 4.699292e-52 | -8.615850e-47 |
| Msa0056140 | Msa1292730 | -0.843511 | 1.339495e-58 | -8.615850e-47 |
| Msa0056140 | Msa1306190 | -0.801940 | 7.103253e-49 | -8.615850e-47 |
| Msa0056140 | Msa1306200 | -0.810730 | 9.967930e-51 | -8.615850e-47 |
| Msa0056140 | Msa1309100 | -0.804118 | 2.518797e-49 | -8.615850e-47 |
| Msa0056140 | Msa1316560 | 0.801404 | 9.150420e-49 | -8.615850e-47 |
| Msa0056140 | Msa1326000 | -0.816997 | 4.143542e-52 | -8.615850e-47 |
| Msa0056140 | Msa1332140 | 0.809432 | 1.898188e-50 | -8.615850e-47 |
| Msa0056140 | Msa1334650 | -0.801848 | 7.417458e-49 | -8.615850e-47 |
| Msa0056140 | Msa1335970 | 0.815718 | 8.010222e-52 | -8.615850e-47 |
| Msa0056140 | Msa1381130 | -0.801361 | 9.337485e-49 | -8.615850e-47 |
| Msa0056140 | Msa1388790 | 0.822229 | 2.648935e-53 | -8.615850e-47 |
| Msa0056140 | Msa1397970 | -0.831073 | 2.052083e-55 | -8.615850e-47 |
| Msa0056140 | Msa1412080 | -0.801234 | 9.914557e-49 | -8.615850e-47 |
| Msa0056140 | Msa1412520 | -0.803608 | 3.214558e-49 | -8.615850e-47 |
| Msa0056140 | Msa1418200 | -0.817019 | 4.097740e-52 | -8.615850e-47 |
| Msa0056140 | Msa1430760 | -0.812875 | 3.401938e-51 | -8.615850e-47 |
| Msa0056140 | Msa1432640 | -0.801980 | 6.970902e-49 | -8.615850e-47 |
| Msa0056140 | Msa1439120 | -0.813715 | 2.224964e-51 | -8.615850e-47 |
| Msa0056140 | Msa1440180 | -0.850159 | 2.033785e-60 | -8.615850e-47 |
| Msa0056140 | Msa1440220 | -0.811243 | 7.717813e-51 | -8.615850e-47 |
| Msa0056140 | Msa1440610 | -0.825688 | 4.090806e-54 | -8.615850e-47 |
| Msa0056140 | Msa1444450 | -0.829879 | 4.021100e-55 | -8.615850e-47 |
| Msa0056140 | Msa1447560 | -0.819039 | 1.431894e-52 | -8.615850e-47 |
| Msa0056140 | Msa1449740 | -0.851252 | 1.001791e-60 | -8.615850e-47 |
| Msa0056140 | Msa1455660 | -0.808264 | 3.373888e-50 | -8.615850e-47 |
| Msa0056140 | Msa1458920 | -0.825509 | 4.510606e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0056140 | MtrunA17_Chr1g0148241 | 97.250 | 400 | 10 | 1 | 1 | 400 | 1 | 399 | 0.0 | 813 |
| Msa0056140 | MtrunA17_Chr3g0138871 | 67.183 | 387 | 116 | 4 | 16 | 399 | 1 | 379 | 0.0 | 560 |
| Msa0056140 | MtrunA17_Chr4g0071911 | 64.083 | 387 | 132 | 2 | 13 | 399 | 14 | 393 | 0.0 | 523 |
| Msa0056140 | MtrunA17_Chr2g0298501 | 60.769 | 390 | 144 | 4 | 11 | 399 | 11 | 392 | 1.52e-172 | 487 |
| Msa0056140 | MtrunA17_Chr2g0298511 | 54.613 | 401 | 162 | 5 | 1 | 399 | 1 | 383 | 6.97e-153 | 437 |
| Msa0056140 | MtrunA17_Chr1g0151841 | 38.211 | 369 | 197 | 8 | 35 | 396 | 28 | 372 | 1.22e-77 | 244 |
| Msa0056140 | MtrunA17_Chr1g0209531 | 39.474 | 380 | 189 | 10 | 30 | 393 | 32 | 386 | 2.20e-76 | 242 |
| Msa0056140 | MtrunA17_Chr2g0276861 | 43.000 | 300 | 149 | 3 | 103 | 400 | 159 | 438 | 3.65e-73 | 235 |
| Msa0056140 | MtrunA17_Chr8g0341461 | 40.881 | 318 | 165 | 6 | 78 | 393 | 110 | 406 | 6.77e-71 | 228 |
| Msa0056140 | MtrunA17_Chr6g0484141 | 42.456 | 285 | 138 | 4 | 111 | 391 | 148 | 410 | 1.22e-68 | 223 |
| Msa0056140 | MtrunA17_Chr5g0423131 | 39.683 | 315 | 163 | 5 | 80 | 391 | 91 | 381 | 3.26e-68 | 221 |
| Msa0056140 | MtrunA17_Chr5g0394961 | 41.404 | 285 | 141 | 4 | 111 | 391 | 150 | 412 | 1.16e-64 | 212 |
| Msa0056140 | MtrunA17_Chr3g0136091 | 37.580 | 314 | 153 | 5 | 81 | 391 | 111 | 384 | 2.14e-63 | 208 |
| Msa0056140 | MtrunA17_Chr4g0073871 | 41.277 | 235 | 115 | 3 | 167 | 400 | 9 | 221 | 1.54e-56 | 185 |
| Msa0056140 | MtrunA17_Chr2g0289021 | 36.913 | 298 | 153 | 10 | 112 | 382 | 61 | 350 | 5.14e-56 | 188 |
| Msa0056140 | MtrunA17_Chr8g0384601 | 34.713 | 314 | 169 | 8 | 108 | 393 | 51 | 356 | 3.05e-52 | 178 |
| Msa0056140 | MtrunA17_Chr5g0394981 | 39.823 | 226 | 113 | 3 | 167 | 391 | 2 | 205 | 4.72e-51 | 170 |
| Msa0056140 | MtrunA17_Chr1g0170231 | 36.513 | 304 | 142 | 12 | 112 | 393 | 63 | 337 | 2.57e-46 | 162 |
| Msa0056140 | MtrunA17_Chr3g0137661 | 33.611 | 360 | 191 | 18 | 50 | 393 | 42 | 369 | 2.10e-41 | 150 |
| Msa0056140 | MtrunA17_Chr2g0322161 | 30.769 | 325 | 161 | 11 | 103 | 393 | 66 | 360 | 6.98e-39 | 143 |
| Msa0056140 | MtrunA17_Chr1g0170151 | 31.818 | 308 | 163 | 7 | 105 | 393 | 57 | 336 | 2.06e-34 | 130 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0056140 | AT4G31350.4 | 60.156 | 384 | 144 | 3 | 17 | 400 | 1 | 375 | 3.92e-166 | 471 |
| Msa0056140 | AT4G31350.1 | 60.156 | 384 | 144 | 3 | 17 | 400 | 1 | 375 | 3.92e-166 | 471 |
| Msa0056140 | AT4G31350.2 | 60.156 | 384 | 144 | 3 | 17 | 400 | 1 | 375 | 3.92e-166 | 471 |
| Msa0056140 | AT5G57270.3 | 56.072 | 387 | 161 | 3 | 16 | 399 | 5 | 385 | 4.20e-164 | 466 |
| Msa0056140 | AT5G57270.1 | 56.072 | 387 | 161 | 3 | 16 | 399 | 5 | 385 | 4.20e-164 | 466 |
| Msa0056140 | AT5G57270.4 | 56.072 | 387 | 161 | 3 | 16 | 399 | 5 | 385 | 4.20e-164 | 466 |
| Msa0056140 | AT5G57270.5 | 56.072 | 387 | 161 | 3 | 16 | 399 | 5 | 385 | 4.20e-164 | 466 |
| Msa0056140 | AT5G57270.2 | 56.072 | 387 | 161 | 3 | 16 | 399 | 5 | 385 | 4.20e-164 | 466 |
| Msa0056140 | AT4G25870.1 | 54.286 | 385 | 168 | 3 | 16 | 398 | 7 | 385 | 7.62e-162 | 460 |
| Msa0056140 | AT2G19160.2 | 55.497 | 382 | 162 | 3 | 19 | 400 | 20 | 393 | 8.88e-162 | 460 |
| Msa0056140 | AT2G19160.1 | 55.497 | 382 | 162 | 3 | 19 | 400 | 20 | 393 | 8.88e-162 | 460 |
| Msa0056140 | AT4G31350.3 | 59.375 | 384 | 142 | 4 | 17 | 400 | 1 | 370 | 6.29e-161 | 457 |
| Msa0056140 | AT4G30060.2 | 54.712 | 382 | 163 | 4 | 19 | 398 | 21 | 394 | 2.18e-154 | 442 |
| Msa0056140 | AT4G30060.1 | 54.712 | 382 | 163 | 4 | 19 | 398 | 21 | 394 | 2.18e-154 | 442 |
| Msa0056140 | AT3G21310.1 | 43.396 | 318 | 156 | 5 | 78 | 393 | 81 | 376 | 1.12e-76 | 243 |
| Msa0056140 | AT3G21310.3 | 43.396 | 318 | 156 | 5 | 78 | 393 | 81 | 376 | 1.12e-76 | 243 |
| Msa0056140 | AT5G11730.1 | 43.574 | 319 | 154 | 6 | 78 | 393 | 84 | 379 | 5.27e-76 | 241 |
| Msa0056140 | AT5G25970.1 | 44.406 | 286 | 134 | 4 | 111 | 393 | 117 | 380 | 4.31e-75 | 239 |
| Msa0056140 | AT5G25970.2 | 44.406 | 286 | 134 | 4 | 111 | 393 | 117 | 380 | 4.31e-75 | 239 |
| Msa0056140 | AT5G25970.3 | 44.406 | 286 | 134 | 4 | 111 | 393 | 117 | 380 | 4.31e-75 | 239 |
| Msa0056140 | AT1G51770.1 | 42.236 | 322 | 160 | 6 | 75 | 393 | 87 | 385 | 4.26e-74 | 236 |
| Msa0056140 | AT5G16170.1 | 44.170 | 283 | 140 | 3 | 113 | 393 | 136 | 402 | 6.39e-73 | 234 |
| Msa0056140 | AT1G73810.1 | 44.599 | 287 | 131 | 5 | 113 | 393 | 147 | 411 | 7.32e-73 | 234 |
| Msa0056140 | AT1G10280.1 | 44.521 | 292 | 140 | 4 | 111 | 400 | 141 | 412 | 1.49e-71 | 230 |
| Msa0056140 | AT1G68390.1 | 40.000 | 325 | 167 | 6 | 74 | 393 | 100 | 401 | 3.53e-70 | 226 |
| Msa0056140 | AT1G10880.1 | 42.414 | 290 | 140 | 6 | 108 | 393 | 113 | 379 | 6.22e-70 | 225 |
| Msa0056140 | AT1G68380.1 | 36.761 | 389 | 185 | 11 | 31 | 395 | 36 | 387 | 1.02e-65 | 214 |
| Msa0056140 | AT1G51770.2 | 37.888 | 322 | 147 | 7 | 75 | 393 | 87 | 358 | 1.14e-57 | 193 |
| Msa0056140 | AT5G14550.3 | 37.793 | 299 | 150 | 10 | 112 | 382 | 64 | 354 | 4.24e-54 | 184 |
| Msa0056140 | AT5G14550.1 | 37.793 | 299 | 150 | 10 | 112 | 382 | 64 | 354 | 4.42e-54 | 184 |
| Msa0056140 | AT5G14550.2 | 40.873 | 252 | 123 | 9 | 112 | 344 | 64 | 308 | 7.73e-52 | 177 |
| Msa0056140 | AT1G11940.1 | 35.621 | 306 | 163 | 11 | 112 | 391 | 73 | 370 | 8.51e-49 | 170 |
| Msa0056140 | AT1G62305.1 | 36.000 | 300 | 151 | 11 | 112 | 382 | 68 | 355 | 1.77e-48 | 169 |
| Msa0056140 | AT5G25330.1 | 38.514 | 296 | 145 | 14 | 113 | 393 | 81 | 354 | 4.25e-48 | 167 |
| Msa0056140 | AT3G52060.1 | 34.694 | 294 | 151 | 10 | 112 | 393 | 74 | 338 | 1.52e-46 | 163 |
| Msa0056140 | AT5G14550.4 | 36.364 | 286 | 145 | 11 | 112 | 382 | 64 | 327 | 1.05e-42 | 153 |
| Msa0056140 | AT1G62305.3 | 38.679 | 212 | 108 | 5 | 112 | 305 | 68 | 275 | 2.94e-41 | 148 |
| Msa0056140 | AT3G21310.2 | 46.821 | 173 | 89 | 2 | 78 | 248 | 81 | 252 | 5.80e-41 | 146 |
| Msa0056140 | AT4G32290.1 | 34.545 | 330 | 182 | 10 | 80 | 393 | 60 | 371 | 1.88e-40 | 148 |
| Msa0056140 | AT5G22070.1 | 32.051 | 312 | 153 | 9 | 113 | 393 | 71 | 354 | 6.05e-40 | 146 |
| Msa0056140 | AT1G11940.2 | 41.011 | 178 | 96 | 4 | 112 | 283 | 73 | 247 | 8.83e-37 | 135 |
| Msa0056140 | AT1G62305.2 | 33.000 | 300 | 136 | 12 | 112 | 382 | 68 | 331 | 1.45e-35 | 134 |
Find 138 sgRNAs with CRISPR-Local
Find 352 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACATACGACATAGCTTATT+TGG | 0.115601 | 1_2:+11637474 | Msa0056140:three_prime_UTR |
| TTTGCGTTTGCGTTTGTATT+TGG | 0.199099 | 1_2:-11631757 | None:intergenic |
| AATACAAAATGTTGGTTATC+AGG | 0.204352 | 1_2:-11635048 | None:intergenic |
| ATAAATACTTCTTCATTCTT+TGG | 0.235633 | 1_2:+11637414 | Msa0056140:three_prime_UTR |
| ATCAATTTATCTTGAGTTTC+CGG | 0.235833 | 1_2:-11637353 | None:intergenic |
| CAACGTTGGTGTTGTGTGTT+TGG | 0.278042 | 1_2:-11631918 | None:intergenic |
| TTCTGAGGGTTGAAAAGTTT+TGG | 0.280828 | 1_2:+11637672 | Msa0056140:three_prime_UTR |
| ATTGCACCTTGCGAGTTAAA+TGG | 0.295978 | 1_2:+11637290 | Msa0056140:CDS |
| GATGTCTCGTCCAACAAAAT+AGG | 0.299048 | 1_2:-11633810 | None:intergenic |
| TTGCGGTTTCCCTCCATATT+CGG | 0.306368 | 1_2:-11635991 | None:intergenic |
| TTAAATTTATCAGCCGAATA+TGG | 0.312461 | 1_2:+11635978 | Msa0056140:intron |
| AACGTTGGTGTTGTGTGTTT+GGG | 0.317656 | 1_2:-11631917 | None:intergenic |
| CCGAGATTCAGTCTCTTTAT+CGG | 0.320366 | 1_2:-11633359 | None:intergenic |
| GCTTGTCTGGTTAGATAATA+TGG | 0.322305 | 1_2:+11637587 | Msa0056140:three_prime_UTR |
| CAAACTTAAAGAGGCCTACT+TGG | 0.327146 | 1_2:+11633167 | Msa0056140:CDS |
| TTGATTGGTCCGAAGGAAAA+TGG | 0.332260 | 1_2:+11636181 | Msa0056140:CDS |
| GAGTTTCCGGATAAAACTTC+CGG | 0.336942 | 1_2:-11637340 | None:intergenic |
| AATGGCATCCTAGGTCATTC+AGG | 0.339509 | 1_2:+11636199 | Msa0056140:CDS |
| TTGCGTTTGCGTTTGTATTT+GGG | 0.352127 | 1_2:-11631756 | None:intergenic |
| AACTTGGGGAAGAATTTCTA+TGG | 0.357256 | 1_2:+11634984 | Msa0056140:CDS |
| GTTGACATTGTTTCTTCATC+AGG | 0.373383 | 1_2:+11631937 | Msa0056140:five_prime_UTR |
| GCTTTCTTCATTTAAGTTCA+AGG | 0.382059 | 1_2:-11633085 | None:intergenic |
| GATCCCTGCATTCAATTCAT+AGG | 0.384468 | 1_2:+11631971 | Msa0056140:five_prime_UTR |
| TTTCCTGGGGCTTGATGAAA+TGG | 0.385080 | 1_2:+11637555 | Msa0056140:three_prime_UTR |
| ATAAATTCAAGCATCATTGC+AGG | 0.386140 | 1_2:+11635807 | Msa0056140:CDS |
| ATGTCTCGTCCAACAAAATA+GGG | 0.391447 | 1_2:-11633809 | None:intergenic |
| ATCCAGGCGGAATCGCAAAT+TGG | 0.399315 | 1_2:+11636145 | Msa0056140:CDS |
| TGAGGCGGAAAGGAGACTTT+TGG | 0.402038 | 1_2:+11635008 | Msa0056140:CDS |
| GCTTGAATTTATTAAAATAG+AGG | 0.405441 | 1_2:-11635796 | None:intergenic |
| AAAACATAAAAGCAACTTTA+GGG | 0.408320 | 1_2:-11633429 | None:intergenic |
| TCAATTTCTTTCAGGTAACT+TGG | 0.409545 | 1_2:+11634968 | Msa0056140:intron |
| GCTCTGGCATACATTCTTCC+AGG | 0.421167 | 1_2:+11633480 | Msa0056140:CDS |
| AGATAATTGCTTTGAGCGTA+TGG | 0.432358 | 1_2:+11637856 | Msa0056140:three_prime_UTR |
| ATGGAACTCCTGAGCTTGTC+TGG | 0.433202 | 1_2:+11637574 | Msa0056140:three_prime_UTR |
| GGGTGGTGTCGTGTTTGGAT+TGG | 0.435090 | 1_2:-11631895 | None:intergenic |
| GTATGTGCGAAAGATGGTTC+TGG | 0.438017 | 1_2:-11637458 | None:intergenic |
| TTTGGTGAATCAACACCATA+TGG | 0.440790 | 1_2:+11637432 | Msa0056140:three_prime_UTR |
| TTTAGATTTGAAACGCCAAT+TGG | 0.446204 | 1_2:-11631864 | None:intergenic |
| CAATTTCTTTCAGGTAACTT+GGG | 0.448407 | 1_2:+11634969 | Msa0056140:intron |
| GACCAATTTGCGATTCCGCC+TGG | 0.448772 | 1_2:-11636147 | None:intergenic |
| GGTGAATTCCCGAGTCTGTA+CGG | 0.449505 | 1_2:-11633338 | None:intergenic |
| AACAAAATATATTGTAGAAT+AGG | 0.451471 | 1_2:-11637614 | None:intergenic |
| GATACCGGTCCGCATGGAAA+TGG | 0.453440 | 1_2:+11635529 | Msa0056140:CDS |
| TCTCAAGGTTGTAGTGTTGT+TGG | 0.455242 | 1_2:+11633283 | Msa0056140:CDS |
| AGATGGTTCTGGGGACCATA+TGG | 0.458184 | 1_2:-11637447 | None:intergenic |
| CAAGTGTCAGCTTTATTGAC+AGG | 0.461823 | 1_2:+11635360 | Msa0056140:CDS |
| AGTTTCCGGATAAAACTTCC+GGG | 0.462746 | 1_2:-11637339 | None:intergenic |
| AGGCTAGAGAGGGAGGGATA+AGG | 0.464072 | 1_2:+11637705 | Msa0056140:three_prime_UTR |
| TGTTCTTTGTTTAACTCTCA+AGG | 0.472432 | 1_2:+11633268 | Msa0056140:CDS |
| ATCCATCAGCCTCAGCCGTC+GGG | 0.472492 | 1_2:-11637504 | None:intergenic |
| TTATCTAACCAGACAAGCTC+AGG | 0.474436 | 1_2:-11637582 | None:intergenic |
| GGGAAGAATTTCTATGGTTG+AGG | 0.477859 | 1_2:+11634990 | Msa0056140:CDS |
| CCGAAGGAAAATGGCATCCT+AGG | 0.478726 | 1_2:+11636190 | Msa0056140:CDS |
| GACACAGATCAAACTTAAAG+AGG | 0.482413 | 1_2:+11633158 | Msa0056140:CDS |
| TGGTATCAACGTTCTCCAAT+TGG | 0.486486 | 1_2:+11631849 | Msa0056140:five_prime_UTR |
| TCCCGAGTCTGTACGGGTGG+TGG | 0.487361 | 1_2:-11633331 | None:intergenic |
| AATACCTATGAATTGAATGC+AGG | 0.488603 | 1_2:-11631975 | None:intergenic |
| AGAGAGGGAGGGATAAGGTT+TGG | 0.493480 | 1_2:+11637710 | Msa0056140:three_prime_UTR |
| TTCCCGACGGCTGAGGCTGA+TGG | 0.495389 | 1_2:+11637502 | Msa0056140:three_prime_UTR |
| TATGTGCGAAAGATGGTTCT+GGG | 0.496070 | 1_2:-11637457 | None:intergenic |
| TACAGTGGTTCTCGATGAAA+CGG | 0.498255 | 1_2:+11635744 | Msa0056140:intron |
| GTTGCTGTGCTACTAAGTTC+AGG | 0.502540 | 1_2:-11631700 | None:intergenic |
| TATGTTTAGATGCTTGATCC+AGG | 0.504214 | 1_2:+11636129 | Msa0056140:intron |
| GGTCGGTGACATATGTTGAT+TGG | 0.514974 | 1_2:+11636166 | Msa0056140:CDS |
| GCAGCACGCTCTAATAGTTA+TGG | 0.518271 | 1_2:+11635766 | Msa0056140:CDS |
| AGCCACCACCCGTACAGACT+CGG | 0.518673 | 1_2:+11633329 | Msa0056140:CDS |
| ACGAGACATCCACAGTGAAC+CGG | 0.526163 | 1_2:+11633823 | Msa0056140:CDS |
| ATGTAGTTGAATTCGAGAAA+AGG | 0.526682 | 1_2:-11637379 | None:intergenic |
| AAACTAATGCAGGGCCATGA+AGG | 0.526685 | 1_2:+11633734 | Msa0056140:intron |
| ATACAAAATGTTGGTTATCA+GGG | 0.528558 | 1_2:-11635047 | None:intergenic |
| CAAGGTTGTAGTGTTGTTGG+TGG | 0.530530 | 1_2:+11633286 | Msa0056140:CDS |
| GGAGAAGTTCCCGACGGCTG+AGG | 0.530631 | 1_2:+11637495 | Msa0056140:three_prime_UTR |
| CGATAAAGAGACTGAATCTC+GGG | 0.531188 | 1_2:+11633360 | Msa0056140:CDS |
| GTATGCCAGAGCTTCTCAAA+AGG | 0.532388 | 1_2:-11633469 | None:intergenic |
| ACAAAATCAAAGCGGCGCAC+TGG | 0.534914 | 1_2:-11635317 | None:intergenic |
| GTGTCGTGTTTGGATTGGAT+CGG | 0.535157 | 1_2:-11631890 | None:intergenic |
| GTTGCCTGAAGTAGAAAAGA+AGG | 0.536747 | 1_2:+11635570 | Msa0056140:CDS |
| GATCTTGTTATCTATTTGCC+CGG | 0.539473 | 1_2:+11637321 | Msa0056140:CDS |
| TTTGCATCACTTGTATAATG+TGG | 0.541176 | 1_2:-11637129 | None:intergenic |
| AAATAGGGGCTGACATGTAT+CGG | 0.542436 | 1_2:-11633794 | None:intergenic |
| GCCACCACCCGTACAGACTC+GGG | 0.543889 | 1_2:+11633330 | Msa0056140:CDS |
| GATGCGTATGGAGAAGTTGA+AGG | 0.544754 | 1_2:+11633058 | Msa0056140:five_prime_UTR |
| GTGAATTCCCGAGTCTGTAC+GGG | 0.546668 | 1_2:-11633337 | None:intergenic |
| TGATAGATTACAGATGCGTA+TGG | 0.547593 | 1_2:+11633046 | Msa0056140:five_prime_UTR |
| GTTCCATTTCATCAAGCCCC+AGG | 0.549265 | 1_2:-11637558 | None:intergenic |
| TGTCTATGTACATGCATCAA+AGG | 0.549613 | 1_2:+11633766 | Msa0056140:CDS |
| ATGGCATCCTAGGTCATTCA+GGG | 0.550473 | 1_2:+11636200 | Msa0056140:CDS |
| AGATTATTAGATTCTTCTGA+GGG | 0.550903 | 1_2:+11637658 | Msa0056140:three_prime_UTR |
| TCTTGATAGGCTAGAGAGGG+AGG | 0.551094 | 1_2:+11637698 | Msa0056140:three_prime_UTR |
| TTGACATTGTTTCTTCATCA+GGG | 0.551846 | 1_2:+11631938 | Msa0056140:five_prime_UTR |
| TTCTCAAAAGGTAATGATCC+CGG | 0.552277 | 1_2:-11633457 | None:intergenic |
| CCTGCCATTTCCATGCGGAC+CGG | 0.561360 | 1_2:-11635533 | None:intergenic |
| TCGTGTTTGGATTGGATCGG+TGG | 0.566887 | 1_2:-11631887 | None:intergenic |
| CCGATAAAGAGACTGAATCT+CGG | 0.567122 | 1_2:+11633359 | Msa0056140:CDS |
| TTTCTATGGTTGAGGCGGAA+AGG | 0.568574 | 1_2:+11634998 | Msa0056140:CDS |
| ATGCGTATGGAGAAGTTGAA+GGG | 0.568960 | 1_2:+11633059 | Msa0056140:five_prime_UTR |
| ATTTATCAGCCGAATATGGA+GGG | 0.569886 | 1_2:+11635982 | Msa0056140:intron |
| TTTGAGCCATTTAACTCGCA+AGG | 0.572858 | 1_2:-11637296 | None:intergenic |
| CCGGTCCGCATGGAAATGGC+AGG | 0.574083 | 1_2:+11635533 | Msa0056140:CDS |
| TATTCTTGATAGGCTAGAGA+GGG | 0.576080 | 1_2:+11637695 | Msa0056140:three_prime_UTR |
| AATTTCTTTCAGGTAACTTG+GGG | 0.576412 | 1_2:+11634970 | Msa0056140:intron |
| ACATATGTTGATTGGTCCGA+AGG | 0.578375 | 1_2:+11636174 | Msa0056140:CDS |
| TAGATTATTAGATTCTTCTG+AGG | 0.578712 | 1_2:+11637657 | Msa0056140:three_prime_UTR |
| ACGTTGGTGTTGTGTGTTTG+GGG | 0.579176 | 1_2:-11631916 | None:intergenic |
| CAGACAACAATACAAAATGT+TGG | 0.582838 | 1_2:-11635056 | None:intergenic |
| CGTTGGTGTTGTGTGTTTGG+GGG | 0.584336 | 1_2:-11631915 | None:intergenic |
| AAATGAAGAAAGCATTTGCA+TGG | 0.584582 | 1_2:+11633095 | Msa0056140:exon |
| TATCCATCAGCCTCAGCCGT+CGG | 0.586020 | 1_2:-11637505 | None:intergenic |
| AAGAATTTCTATGGTTGAGG+CGG | 0.595575 | 1_2:+11634993 | Msa0056140:CDS |
| ACATTATACAAGTGATGCAA+AGG | 0.598519 | 1_2:+11637131 | Msa0056140:CDS |
| TAAATTCAAGCATCATTGCA+GGG | 0.600918 | 1_2:+11635808 | Msa0056140:CDS |
| AATTTATCAGCCGAATATGG+AGG | 0.605235 | 1_2:+11635981 | Msa0056140:intron |
| TATGTCGTATGTGCGAAAGA+TGG | 0.605943 | 1_2:-11637464 | None:intergenic |
| TCACGAGCCCTGAATGACCT+AGG | 0.607827 | 1_2:-11636207 | None:intergenic |
| GTATTCTTGATAGGCTAGAG+AGG | 0.613057 | 1_2:+11637694 | Msa0056140:three_prime_UTR |
| ATACCTATGAATTGAATGCA+GGG | 0.613189 | 1_2:-11631974 | None:intergenic |
| CTTGATAGGCTAGAGAGGGA+GGG | 0.618521 | 1_2:+11637699 | Msa0056140:three_prime_UTR |
| ACTAAAACGATAATCCAAGT+AGG | 0.618618 | 1_2:-11633181 | None:intergenic |
| GCTCATCAGAATAGCAGTTG+CGG | 0.627810 | 1_2:-11636008 | None:intergenic |
| TTAAACAAAGAACACGTCGA+GGG | 0.629738 | 1_2:-11633259 | None:intergenic |
| AATTCCCGAGTCTGTACGGG+TGG | 0.635893 | 1_2:-11633334 | None:intergenic |
| GTACTATGCTGTTCAAAGCA+CGG | 0.641245 | 1_2:+11633405 | Msa0056140:CDS |
| GAGAACGTTGATACCAGTGT+AGG | 0.641386 | 1_2:-11631842 | None:intergenic |
| TATGTGGATACCGGTCCGCA+TGG | 0.642514 | 1_2:+11635523 | Msa0056140:CDS |
| AGGCGGAATCGCAAATTGGT+CGG | 0.649905 | 1_2:+11636149 | Msa0056140:CDS |
| TAAACAAAGAACACGTCGAG+GGG | 0.662055 | 1_2:-11633258 | None:intergenic |
| ATGTGCGAAAGATGGTTCTG+GGG | 0.665884 | 1_2:-11637456 | None:intergenic |
| TGCGTATGGAGAAGTTGAAG+GGG | 0.668554 | 1_2:+11633060 | Msa0056140:five_prime_UTR |
| TGTCTCGTCCAACAAAATAG+GGG | 0.669880 | 1_2:-11633808 | None:intergenic |
| GTTTAGATGCTTGATCCAGG+CGG | 0.670501 | 1_2:+11636132 | Msa0056140:intron |
| TTATTTGGAGAAGTTCCCGA+CGG | 0.684804 | 1_2:+11637489 | Msa0056140:three_prime_UTR |
| AAACAAAGAACACGTCGAGG+GGG | 0.699297 | 1_2:-11633257 | None:intergenic |
| ACATACCTGCCATTTCCATG+CGG | 0.707617 | 1_2:-11635538 | None:intergenic |
| TACCCCATACCGGTTCACTG+TGG | 0.707943 | 1_2:-11633832 | None:intergenic |
| ACATGTCTTACAGAGAACAG+TGG | 0.711790 | 1_2:+11637265 | Msa0056140:intron |
| AGTTGTACACAAAATCAAAG+CGG | 0.723003 | 1_2:-11635325 | None:intergenic |
| GTTAAACAAAGAACACGTCG+AGG | 0.732342 | 1_2:-11633260 | None:intergenic |
| TGAAGAAACAATGTCAACGT+TGG | 0.734229 | 1_2:-11631932 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAATATATCACAAATTA+TGG | - | chr1_2:11632322-11632341 | None:intergenic | 10.0% |
| !! | ATAATAAGTTGTTAAATTAT+AGG | + | chr1_2:11632716-11632735 | Msa0056140:intron | 10.0% |
| !! | TAATAAGTTGTTAAATTATA+GGG | + | chr1_2:11632717-11632736 | Msa0056140:intron | 10.0% |
| !! | AACAATATAATAAATGAAAA+AGG | - | chr1_2:11633575-11633594 | None:intergenic | 10.0% |
| !! | TATTTATACTAGATAAAAAT+TGG | - | chr1_2:11636365-11636384 | None:intergenic | 10.0% |
| !! | TTACTATTACTATTAATTAA+TGG | + | chr1_2:11636542-11636561 | Msa0056140:intron | 10.0% |
| !!! | ACTTTTTTACTTTTTCAATT+CGG | + | chr1_2:11632174-11632193 | Msa0056140:intron | 15.0% |
| !!! | TTTTTGTTATTGTTAGAATT+GGG | + | chr1_2:11632252-11632271 | Msa0056140:intron | 15.0% |
| !! | AATAAGTTGTTAAATTATAG+GGG | + | chr1_2:11632718-11632737 | Msa0056140:intron | 15.0% |
| !!! | TATTTTACTATTAAGGATTA+AGG | - | chr1_2:11634555-11634574 | None:intergenic | 15.0% |
| !! | AAATAAAAAAAAAAGCTATG+TGG | + | chr1_2:11635507-11635526 | Msa0056140:intron | 15.0% |
| !! | AAAAGCAATATTATAGAATA+TGG | - | chr1_2:11637204-11637223 | None:intergenic | 15.0% |
| !! | AACAAAATATATTGTAGAAT+AGG | - | chr1_2:11637617-11637636 | None:intergenic | 15.0% |
| !!! | GTTTTTGTTATTGTTAGAAT+TGG | + | chr1_2:11632251-11632270 | Msa0056140:intron | 20.0% |
| !!! | TTTTGTTATTGTTAGAATTG+GGG | + | chr1_2:11632253-11632272 | Msa0056140:intron | 20.0% |
| !! | TTAACAACTTATTATCACTT+AGG | - | chr1_2:11632711-11632730 | None:intergenic | 20.0% |
| !! | ATAGAAAGTGGTTAAATATA+GGG | + | chr1_2:11632749-11632768 | Msa0056140:intron | 20.0% |
| !!! | CTCTTTATTATGTTTTTTGT+TGG | + | chr1_2:11632992-11633011 | Msa0056140:intron | 20.0% |
| !! | AAAACATAAAAGCAACTTTA+GGG | - | chr1_2:11633432-11633451 | None:intergenic | 20.0% |
| !! | AAAAACATAAAAGCAACTTT+AGG | - | chr1_2:11633433-11633452 | None:intergenic | 20.0% |
| !! | CAAGTAAAGTTCAAATAAAT+AGG | - | chr1_2:11633712-11633731 | None:intergenic | 20.0% |
| !!! | ATATATACTAGCTCTTTATA+TGG | + | chr1_2:11633870-11633889 | Msa0056140:intron | 20.0% |
| !! | TTATCATTCTTAGCTTATAT+TGG | - | chr1_2:11633908-11633927 | None:intergenic | 20.0% |
| !!! | CTTCAGCTTAATATTTTATT+AGG | - | chr1_2:11634283-11634302 | None:intergenic | 20.0% |
| !! | CGACTTATTATTAATTATCA+TGG | - | chr1_2:11634379-11634398 | None:intergenic | 20.0% |
| !! | TGATATTGATAAAAACTCAT+TGG | + | chr1_2:11634715-11634734 | Msa0056140:intron | 20.0% |
| !!! | TTATTCATCTAATTTGTAGA+AGG | - | chr1_2:11635401-11635420 | None:intergenic | 20.0% |
| !! | GCTTGAATTTATTAAAATAG+AGG | - | chr1_2:11635799-11635818 | None:intergenic | 20.0% |
| !! | TAAACTCATGAAAAAAATAG+CGG | + | chr1_2:11636239-11636258 | Msa0056140:CDS | 20.0% |
| !!! | ATTACGTTCAAAAGTATAAT+TGG | + | chr1_2:11636443-11636462 | Msa0056140:intron | 20.0% |
| !!! | TTTTTCAATATACCATTGTA+TGG | - | chr1_2:11636831-11636850 | None:intergenic | 20.0% |
| !!! | GTTTTGAAACAAAAACAAAA+TGG | + | chr1_2:11636887-11636906 | Msa0056140:intron | 20.0% |
| !! | TGGTAAAACAAACAAATATA+TGG | + | chr1_2:11636907-11636926 | Msa0056140:intron | 20.0% |
| !! | AAAAATATGCACTAAAAAAG+AGG | - | chr1_2:11637000-11637019 | None:intergenic | 20.0% |
| !! | TGGAATATTGTAAATTAACA+AGG | - | chr1_2:11637041-11637060 | None:intergenic | 20.0% |
| !! | AATATTATAGAATATGGAAG+AGG | - | chr1_2:11637198-11637217 | None:intergenic | 20.0% |
| !! | ATAAATACTTCTTCATTCTT+TGG | + | chr1_2:11637414-11637433 | Msa0056140:three_prime_UTR | 20.0% |
| !! | TTCATTTTCGAATACTTATG+TGG | + | chr1_2:11632022-11632041 | Msa0056140:intron | 25.0% |
| ! | GCAAATTGTTATATACAATC+AGG | + | chr1_2:11632453-11632472 | Msa0056140:intron | 25.0% |
| ! | ATTAATTATTGTTTCAGTCG+TGG | + | chr1_2:11632492-11632511 | Msa0056140:intron | 25.0% |
| ! | ATAGCAAGTGGTTAAATATA+TGG | + | chr1_2:11632651-11632670 | Msa0056140:intron | 25.0% |
| !!! | TTAACAACTTGCTATGAATT+TGG | - | chr1_2:11632678-11632697 | None:intergenic | 25.0% |
| ! | GATAGAAAGTGGTTAAATAT+AGG | + | chr1_2:11632748-11632767 | Msa0056140:intron | 25.0% |
| ! | TAGAAAGTGGTTAAATATAG+GGG | + | chr1_2:11632750-11632769 | Msa0056140:intron | 25.0% |
| !!! | AGAAGATTTTTTGTGAATTG+TGG | - | chr1_2:11633121-11633140 | None:intergenic | 25.0% |
| ! | ACGTCTTCTTTCAAAATAAT+AGG | + | chr1_2:11633544-11633563 | Msa0056140:intron | 25.0% |
| !!! | TTACCAAGTGCTATTTTTTT+TGG | + | chr1_2:11633659-11633678 | Msa0056140:intron | 25.0% |
| ! | AAACCAAAAAAAATAGCACT+TGG | - | chr1_2:11633665-11633684 | None:intergenic | 25.0% |
| ! | TTTACTTGTAAAACTAATGC+AGG | + | chr1_2:11633724-11633743 | Msa0056140:intron | 25.0% |
| ! | TTACTTGTAAAACTAATGCA+GGG | + | chr1_2:11633725-11633744 | Msa0056140:intron | 25.0% |
| ! | TATCAAATGATCGAAATTTG+AGG | + | chr1_2:11633978-11633997 | Msa0056140:intron | 25.0% |
| ! | AATCAATTATGACAAAAGAC+GGG | - | chr1_2:11634349-11634368 | None:intergenic | 25.0% |
| ! | CAATCAATTATGACAAAAGA+CGG | - | chr1_2:11634350-11634369 | None:intergenic | 25.0% |
| !! | AGTATGAATGCAATTGTTTT+CGG | - | chr1_2:11634426-11634445 | None:intergenic | 25.0% |
| !! | GTTCCTTAAAATTTTGTCAT+TGG | + | chr1_2:11634806-11634825 | Msa0056140:intron | 25.0% |
| !! | TCTCCAATGACAAAATTTTA+AGG | - | chr1_2:11634812-11634831 | None:intergenic | 25.0% |
| !! | ATACAAAATGTTGGTTATCA+GGG | - | chr1_2:11635050-11635069 | None:intergenic | 25.0% |
| !! | AATACAAAATGTTGGTTATC+AGG | - | chr1_2:11635051-11635070 | None:intergenic | 25.0% |
| !! | ATTTTGTATTGTTGTCTGAT+AGG | + | chr1_2:11635061-11635080 | Msa0056140:CDS | 25.0% |
| ! | TTTGTTCCATTGCTAAAATT+TGG | + | chr1_2:11635103-11635122 | Msa0056140:intron | 25.0% |
| !!! | CTAAAATTTGGTTGGTTTTT+GGG | + | chr1_2:11635115-11635134 | Msa0056140:intron | 25.0% |
| ! | TTTGTTCCATTGCTAAAATT+TGG | + | chr1_2:11635103-11635122 | Msa0056140:intron | 25.0% |
| !!! | CTAAAATTTGGTTGGTTTTT+GGG | + | chr1_2:11635115-11635134 | Msa0056140:intron | 25.0% |
| ! | AAAAGGAACATACAATTGAA+CGG | - | chr1_2:11635282-11635301 | None:intergenic | 25.0% |
| ! | TATGTAGAATCTTCAATGAA+AGG | - | chr1_2:11635440-11635459 | None:intergenic | 25.0% |
| ! | TATAACCGACAATAATAACT+TGG | - | chr1_2:11635874-11635893 | None:intergenic | 25.0% |
| !! | TTGTTACAAAAAGCATAGAA+AGG | - | chr1_2:11635937-11635956 | None:intergenic | 25.0% |
| ! | TTAAATTTATCAGCCGAATA+TGG | + | chr1_2:11635978-11635997 | Msa0056140:intron | 25.0% |
| ! | CACTTATAAAGAGAAAAGAT+TGG | - | chr1_2:11636066-11636085 | None:intergenic | 25.0% |
| ! | TTTCTCTTTATAAGTGATAC+AGG | + | chr1_2:11636070-11636089 | Msa0056140:intron | 25.0% |
| ! | TTCTCTTTATAAGTGATACA+GGG | + | chr1_2:11636071-11636090 | Msa0056140:intron | 25.0% |
| ! | TATCTAGTATAAATATCACC+AGG | + | chr1_2:11636370-11636389 | Msa0056140:intron | 25.0% |
| !! | GATTTTCATCAAGATTGTTA+TGG | - | chr1_2:11636412-11636431 | None:intergenic | 25.0% |
| !!! | AGATCTCAATTTTTAGATCA+CGG | - | chr1_2:11636791-11636810 | None:intergenic | 25.0% |
| ! | ATTCTAACAATTCCATACAA+TGG | + | chr1_2:11636816-11636835 | Msa0056140:intron | 25.0% |
| ! | AAATTAACAAGGTAAAGACA+AGG | - | chr1_2:11637030-11637049 | None:intergenic | 25.0% |
| ! | ATCAATTTATCTTGAGTTTC+CGG | - | chr1_2:11637356-11637375 | None:intergenic | 25.0% |
| !!! | TAGATCAAATTTTGATTTCC+TGG | + | chr1_2:11637540-11637559 | Msa0056140:three_prime_UTR | 25.0% |
| !!! | AGATCAAATTTTGATTTCCT+GGG | + | chr1_2:11637541-11637560 | Msa0056140:three_prime_UTR | 25.0% |
| ! | TAGATTATTAGATTCTTCTG+AGG | + | chr1_2:11637657-11637676 | Msa0056140:three_prime_UTR | 25.0% |
| ! | AGATTATTAGATTCTTCTGA+GGG | + | chr1_2:11637658-11637677 | Msa0056140:three_prime_UTR | 25.0% |
| !!! | AAAGTTTTGGTATTCTTGAT+AGG | + | chr1_2:11637685-11637704 | Msa0056140:three_prime_UTR | 25.0% |
| !!! | GTTTATTTTTATACAAGTGC+TGG | + | chr1_2:11637884-11637903 | Msa0056140:three_prime_UTR | 25.0% |
| ! | TTTAGATTTGAAACGCCAAT+TGG | - | chr1_2:11631867-11631886 | None:intergenic | 30.0% |
| ! | TTGACATTGTTTCTTCATCA+GGG | + | chr1_2:11631938-11631957 | Msa0056140:five_prime_UTR | 30.0% |
| ATACCTATGAATTGAATGCA+GGG | - | chr1_2:11631977-11631996 | None:intergenic | 30.0% | |
| AATACCTATGAATTGAATGC+AGG | - | chr1_2:11631978-11631997 | None:intergenic | 30.0% | |
| ! | TATGATTTGTGTGGTATGTT+TGG | + | chr1_2:11632383-11632402 | Msa0056140:intron | 30.0% |
| ! | TATGTTTGGATTGAGGTTTT+AGG | + | chr1_2:11632397-11632416 | Msa0056140:intron | 30.0% |
| TGACTAAAATGCAACAAAGT+CGG | - | chr1_2:11632594-11632613 | None:intergenic | 30.0% | |
| TTTGCAAGTTTAATAGAGTG+AGG | + | chr1_2:11632777-11632796 | Msa0056140:intron | 30.0% | |
| TTGCAAGTTTAATAGAGTGA+GGG | + | chr1_2:11632778-11632797 | Msa0056140:intron | 30.0% | |
| ! | GTTTTGCATACTTGAAAACA+TGG | + | chr1_2:11632873-11632892 | Msa0056140:intron | 30.0% |
| !! | CTCTAGAGTATATTGGTTAT+TGG | + | chr1_2:11632933-11632952 | Msa0056140:intron | 30.0% |
| ! | GCTTTCTTCATTTAAGTTCA+AGG | - | chr1_2:11633088-11633107 | None:intergenic | 30.0% |
| !! | AAATGAAGAAAGCATTTGCA+TGG | + | chr1_2:11633095-11633114 | Msa0056140:exon | 30.0% |
| CACAAAAAATCTTCTGATCA+TGG | + | chr1_2:11633126-11633145 | Msa0056140:CDS | 30.0% | |
| AAAAATCTTCTGATCATGGT+TGG | + | chr1_2:11633130-11633149 | Msa0056140:CDS | 30.0% | |
| ACTAAAACGATAATCCAAGT+AGG | - | chr1_2:11633184-11633203 | None:intergenic | 30.0% | |
| ! | TGTTCTTTGTTTAACTCTCA+AGG | + | chr1_2:11633268-11633287 | Msa0056140:CDS | 30.0% |
| !! | TGCTTTTATGTTTTTGACTC+CGG | + | chr1_2:11633438-11633457 | Msa0056140:CDS | 30.0% |
| ! | AGACAGAAAATTTTCCTTCA+TGG | - | chr1_2:11633751-11633770 | None:intergenic | 30.0% |
| GCTAAGAATGATAAAGAATG+TGG | + | chr1_2:11633914-11633933 | Msa0056140:intron | 30.0% | |
| !! | CATTCATTTTCCAAAGTGTT+GGG | - | chr1_2:11634038-11634057 | None:intergenic | 30.0% |
| ! | TCATTCATTTTCCAAAGTGT+TGG | - | chr1_2:11634039-11634058 | None:intergenic | 30.0% |
| GATGCTTATTACTTGTAACT+GGG | - | chr1_2:11634133-11634152 | None:intergenic | 30.0% | |
| TGATGCTTATTACTTGTAAC+TGG | - | chr1_2:11634134-11634153 | None:intergenic | 30.0% | |
| CAACTAAATCCAAAGAAACA+GGG | - | chr1_2:11634218-11634237 | None:intergenic | 30.0% | |
| !!! | GGTTTGCTGCATTTTATTTT+TGG | + | chr1_2:11634582-11634601 | Msa0056140:intron | 30.0% |
| TAGTGACAATTTCATAGCTA+TGG | + | chr1_2:11634616-11634635 | Msa0056140:intron | 30.0% | |
| ATTTGAGTGGATACATTACA+TGG | - | chr1_2:11634776-11634795 | None:intergenic | 30.0% | |
| !!! | ATGCGTGATTTTTTGAATAG+TGG | - | chr1_2:11634917-11634936 | None:intergenic | 30.0% |
| GAAAGAAATTGAAAACCAGT+TGG | - | chr1_2:11634960-11634979 | None:intergenic | 30.0% | |
| !!! | ACTGGTTTTCAATTTCTTTC+AGG | + | chr1_2:11634960-11634979 | Msa0056140:intron | 30.0% |
| ! | TCAATTTCTTTCAGGTAACT+TGG | + | chr1_2:11634968-11634987 | Msa0056140:intron | 30.0% |
| ! | CAATTTCTTTCAGGTAACTT+GGG | + | chr1_2:11634969-11634988 | Msa0056140:intron | 30.0% |
| ! | AATTTCTTTCAGGTAACTTG+GGG | + | chr1_2:11634970-11634989 | Msa0056140:intron | 30.0% |
| CAGACAACAATACAAAATGT+TGG | - | chr1_2:11635059-11635078 | None:intergenic | 30.0% | |
| TTCCATTGCTAAAATTTGGT+TGG | + | chr1_2:11635107-11635126 | Msa0056140:intron | 30.0% | |
| !! | AACCAACCAAATTTTAGCAA+TGG | - | chr1_2:11635112-11635131 | None:intergenic | 30.0% |
| !!! | GCTAAAATTTGGTTGGTTTT+TGG | + | chr1_2:11635114-11635133 | Msa0056140:intron | 30.0% |
| GAAAGGAACATACAATTGAA+CGG | - | chr1_2:11635148-11635167 | None:intergenic | 30.0% | |
| AGTTGTACACAAAATCAAAG+CGG | - | chr1_2:11635194-11635213 | None:intergenic | 30.0% | |
| TTCCATTGCTAAAATTTGGT+TGG | + | chr1_2:11635107-11635126 | Msa0056140:intron | 30.0% | |
| !! | AACCAACCAAATTTTAGCAA+TGG | - | chr1_2:11635112-11635131 | None:intergenic | 30.0% |
| !!! | GCTAAAATTTGGTTGGTTTT+TGG | + | chr1_2:11635114-11635133 | Msa0056140:intron | 30.0% |
| AGTTGTACACAAAATCAAAG+CGG | - | chr1_2:11635194-11635213 | None:intergenic | 30.0% | |
| GATTCTACATATCTGTTACA+TGG | + | chr1_2:11635449-11635468 | Msa0056140:intron | 30.0% | |
| AAAAAAAGCTATGTGGATAC+CGG | + | chr1_2:11635514-11635533 | Msa0056140:intron | 30.0% | |
| ! | AAATCCTTCTTTTCTACTTC+AGG | - | chr1_2:11635577-11635596 | None:intergenic | 30.0% |
| ! | AGAAAAGAAGGATTTTCGAA+AGG | + | chr1_2:11635582-11635601 | Msa0056140:CDS | 30.0% |
| ! | GAAAAGAAGGATTTTCGAAA+GGG | + | chr1_2:11635583-11635602 | Msa0056140:CDS | 30.0% |
| TAACCTCAATGAATGGTTTA+TGG | - | chr1_2:11635635-11635654 | None:intergenic | 30.0% | |
| CAAATCTTAACCTCAATGAA+TGG | - | chr1_2:11635642-11635661 | None:intergenic | 30.0% | |
| CATTCATTGAGGTTAAGATT+TGG | + | chr1_2:11635640-11635659 | Msa0056140:intron | 30.0% | |
| !! | TCTTCTTGTTTCTAATACAG+TGG | + | chr1_2:11635729-11635748 | Msa0056140:intron | 30.0% |
| ATAAATTCAAGCATCATTGC+AGG | + | chr1_2:11635807-11635826 | Msa0056140:CDS | 30.0% | |
| TAAATTCAAGCATCATTGCA+GGG | + | chr1_2:11635808-11635827 | Msa0056140:CDS | 30.0% | |
| GGTTATAGCATCACAAATAA+TGG | + | chr1_2:11635887-11635906 | Msa0056140:intron | 30.0% | |
| GCACTTACATTAAAAAAGGT+TGG | - | chr1_2:11636042-11636061 | None:intergenic | 30.0% | |
| TGGTGCACTTACATTAAAAA+AGG | - | chr1_2:11636046-11636065 | None:intergenic | 30.0% | |
| AGAGTGCAAAAACATTTGAA+GGG | - | chr1_2:11636289-11636308 | None:intergenic | 30.0% | |
| ! | AAGAGTGCAAAAACATTTGA+AGG | - | chr1_2:11636290-11636309 | None:intergenic | 30.0% |
| GCTAAAGACAAATTCTTTGA+TGG | - | chr1_2:11636322-11636341 | None:intergenic | 30.0% | |
| ! | ATAAAAATTGGCTCTCTGAA+AGG | - | chr1_2:11636353-11636372 | None:intergenic | 30.0% |
| ACTAACTAACTAAGCTTACA+AGG | - | chr1_2:11636612-11636631 | None:intergenic | 30.0% | |
| TCCTTATATATAGACCAACA+AGG | - | chr1_2:11636693-11636712 | None:intergenic | 30.0% | |
| !!! | TTTTTTCTGTTACAAGAGAG+AGG | - | chr1_2:11636723-11636742 | None:intergenic | 30.0% |
| !! | GATCTCAATTTTTAGATCAC+GGG | - | chr1_2:11636790-11636809 | None:intergenic | 30.0% |
| !! | GTTTTTGTTTCAAAACTACG+AGG | - | chr1_2:11636883-11636902 | None:intergenic | 30.0% |
| AACAGCAAATTCAGTTATCT+AGG | + | chr1_2:11636957-11636976 | Msa0056140:intron | 30.0% | |
| ACAGCAAATTCAGTTATCTA+GGG | + | chr1_2:11636958-11636977 | Msa0056140:intron | 30.0% | |
| TTTGAAGATAAAAGCTGTAC+TGG | - | chr1_2:11637061-11637080 | None:intergenic | 30.0% | |
| TTTGCATCACTTGTATAATG+TGG | - | chr1_2:11637132-11637151 | None:intergenic | 30.0% | |
| ACATTATACAAGTGATGCAA+AGG | + | chr1_2:11637131-11637150 | Msa0056140:CDS | 30.0% | |
| !! | TATTTCACTTCCTCTAGTTT+TGG | + | chr1_2:11637163-11637182 | Msa0056140:intron | 30.0% |
| ATCATAAGCATTCTTTCAAC+AGG | - | chr1_2:11637230-11637249 | None:intergenic | 30.0% | |
| ATGTAGTTGAATTCGAGAAA+AGG | - | chr1_2:11637382-11637401 | None:intergenic | 30.0% | |
| !!! | GATCAAATTTTGATTTCCTG+GGG | + | chr1_2:11637542-11637561 | Msa0056140:three_prime_UTR | 30.0% |
| TTGCGTTTGCGTTTGTATTT+GGG | - | chr1_2:11631759-11631778 | None:intergenic | 35.0% | |
| TTTGCGTTTGCGTTTGTATT+TGG | - | chr1_2:11631760-11631779 | None:intergenic | 35.0% | |
| ATGTTGAAAAACACCTACAC+TGG | + | chr1_2:11631829-11631848 | Msa0056140:five_prime_UTR | 35.0% | |
| TGAAGAAACAATGTCAACGT+TGG | - | chr1_2:11631935-11631954 | None:intergenic | 35.0% | |
| ! | GTTGACATTGTTTCTTCATC+AGG | + | chr1_2:11631937-11631956 | Msa0056140:five_prime_UTR | 35.0% |
| ATAGATCTCTGTTCTGTTCA+TGG | + | chr1_2:11632083-11632102 | Msa0056140:intron | 35.0% | |
| ! | TACATCGCTTATGATTTGTG+TGG | + | chr1_2:11632374-11632393 | Msa0056140:intron | 35.0% |
| !!! | TTTGGATTGAGGTTTTAGGA+AGG | + | chr1_2:11632401-11632420 | Msa0056140:intron | 35.0% |
| !!! | TTGGATTGAGGTTTTAGGAA+GGG | + | chr1_2:11632402-11632421 | Msa0056140:intron | 35.0% |
| TTGCTATCAATTCAGTCTCT+AGG | - | chr1_2:11632638-11632657 | None:intergenic | 35.0% | |
| !! | AATTAGTCCCTGACTTGTTT+AGG | - | chr1_2:11632820-11632839 | None:intergenic | 35.0% |
| AAACAAGTCAGGGACTAATT+TGG | + | chr1_2:11632820-11632839 | Msa0056140:intron | 35.0% | |
| !! | CCAATATACTCTAGAGTAGA+TGG | - | chr1_2:11632929-11632948 | None:intergenic | 35.0% |
| !! | CCATCTACTCTAGAGTATAT+TGG | + | chr1_2:11632926-11632945 | Msa0056140:intron | 35.0% |
| !!! | ATGTTTTTTGTTGGTGAGAC+AGG | + | chr1_2:11633001-11633020 | Msa0056140:intron | 35.0% |
| !!! | TGTTTTTTGTTGGTGAGACA+GGG | + | chr1_2:11633002-11633021 | Msa0056140:intron | 35.0% |
| TGATAGATTACAGATGCGTA+TGG | + | chr1_2:11633046-11633065 | Msa0056140:five_prime_UTR | 35.0% | |
| GACACAGATCAAACTTAAAG+AGG | + | chr1_2:11633158-11633177 | Msa0056140:CDS | 35.0% | |
| TTAAACAAAGAACACGTCGA+GGG | - | chr1_2:11633262-11633281 | None:intergenic | 35.0% | |
| !! | GCTTTTATGTTTTTGACTCC+GGG | + | chr1_2:11633439-11633458 | Msa0056140:CDS | 35.0% |
| TTCTCAAAAGGTAATGATCC+CGG | - | chr1_2:11633460-11633479 | None:intergenic | 35.0% | |
| GAATAGGAATGTCATATACC+TGG | - | chr1_2:11633501-11633520 | None:intergenic | 35.0% | |
| ! | AAATCTAAGAGTGTGGTCTA+TGG | - | chr1_2:11633523-11633542 | None:intergenic | 35.0% |
| !! | GACAAGCATTGATATGAATG+AGG | - | chr1_2:11633626-11633645 | None:intergenic | 35.0% |
| TGTCTATGTACATGCATCAA+AGG | + | chr1_2:11633766-11633785 | Msa0056140:CDS | 35.0% | |
| ATGTCTCGTCCAACAAAATA+GGG | - | chr1_2:11633812-11633831 | None:intergenic | 35.0% | |
| TTTGTTAACACCCAACACTT+TGG | + | chr1_2:11634025-11634044 | Msa0056140:intron | 35.0% | |
| GGAAAATGAATGACTGTGTA+AGG | + | chr1_2:11634046-11634065 | Msa0056140:intron | 35.0% | |
| AAATGAATGACTGTGTAAGG+CGG | + | chr1_2:11634049-11634068 | Msa0056140:intron | 35.0% | |
| !!! | GGTTTTAATTTAATTCGCGC+AGG | - | chr1_2:11634180-11634199 | None:intergenic | 35.0% |
| ! | CAGAAATTTCCCTGTTTCTT+TGG | + | chr1_2:11634206-11634225 | Msa0056140:intron | 35.0% |
| CCAACTAAATCCAAAGAAAC+AGG | - | chr1_2:11634219-11634238 | None:intergenic | 35.0% | |
| ! | CCTGTTTCTTTGGATTTAGT+TGG | + | chr1_2:11634216-11634235 | Msa0056140:intron | 35.0% |
| AAAGTTCATCTAATCACGCA+AGG | + | chr1_2:11634306-11634325 | Msa0056140:intron | 35.0% | |
| ATCTCGAATGGTGTTTCTTA+GGG | + | chr1_2:11634527-11634546 | Msa0056140:intron | 35.0% | |
| AACGCATTTCAGTATTTGAG+TGG | - | chr1_2:11634789-11634808 | None:intergenic | 35.0% | |
| AACTTGGGGAAGAATTTCTA+TGG | + | chr1_2:11634984-11635003 | Msa0056140:CDS | 35.0% | |
| AAGAATTTCTATGGTTGAGG+CGG | + | chr1_2:11634993-11635012 | Msa0056140:CDS | 35.0% | |
| CAACCATAAACCATTCATTG+AGG | + | chr1_2:11635629-11635648 | Msa0056140:intron | 35.0% | |
| CATGTCAGAAAAACTACCAT+TGG | - | chr1_2:11635696-11635715 | None:intergenic | 35.0% | |
| GCTGACCAAGTTATTATTGT+CGG | + | chr1_2:11635866-11635885 | Msa0056140:intron | 35.0% | |
| AATTTATCAGCCGAATATGG+AGG | + | chr1_2:11635981-11636000 | Msa0056140:intron | 35.0% | |
| ATTTATCAGCCGAATATGGA+GGG | + | chr1_2:11635982-11636001 | Msa0056140:intron | 35.0% | |
| TATGTTTAGATGCTTGATCC+AGG | + | chr1_2:11636129-11636148 | Msa0056140:intron | 35.0% | |
| CTAAGCTTACAAGGATAACT+AGG | - | chr1_2:11636603-11636622 | None:intergenic | 35.0% | |
| ! | GCCTTGTTGGTCTATATATA+AGG | + | chr1_2:11636689-11636708 | Msa0056140:intron | 35.0% |
| CAGCAAATTCAGTTATCTAG+GGG | + | chr1_2:11636959-11636978 | Msa0056140:intron | 35.0% | |
| TATGCACTAAAAAAGAGGTC+CGG | - | chr1_2:11636995-11637014 | None:intergenic | 35.0% | |
| !!! | TTCCTCTAGTTTTGGTTCTA+AGG | + | chr1_2:11637171-11637190 | Msa0056140:intron | 35.0% |
| ! | GATCTTGTTATCTATTTGCC+CGG | + | chr1_2:11637321-11637340 | Msa0056140:CDS | 35.0% |
| TTTGGTGAATCAACACCATA+TGG | + | chr1_2:11637432-11637451 | Msa0056140:three_prime_UTR | 35.0% | |
| CACATACGACATAGCTTATT+TGG | + | chr1_2:11637474-11637493 | Msa0056140:three_prime_UTR | 35.0% | |
| GCTTGTCTGGTTAGATAATA+TGG | + | chr1_2:11637587-11637606 | Msa0056140:three_prime_UTR | 35.0% | |
| !! | TTCTGAGGGTTGAAAAGTTT+TGG | + | chr1_2:11637672-11637691 | Msa0056140:three_prime_UTR | 35.0% |
| TATTCTTGATAGGCTAGAGA+GGG | + | chr1_2:11637695-11637714 | Msa0056140:three_prime_UTR | 35.0% | |
| ! | AGATAATTGCTTTGAGCGTA+TGG | + | chr1_2:11637856-11637875 | Msa0056140:three_prime_UTR | 35.0% |
| TGGTATCAACGTTCTCCAAT+TGG | + | chr1_2:11631849-11631868 | Msa0056140:five_prime_UTR | 40.0% | |
| !! | AACGTTGGTGTTGTGTGTTT+GGG | - | chr1_2:11631920-11631939 | None:intergenic | 40.0% |
| GATCCCTGCATTCAATTCAT+AGG | + | chr1_2:11631971-11631990 | Msa0056140:five_prime_UTR | 40.0% | |
| TCGGAAATTGCAAGCTGATT+AGG | + | chr1_2:11632193-11632212 | Msa0056140:intron | 40.0% | |
| TGTGTGGTATGTTTGGATTG+AGG | + | chr1_2:11632390-11632409 | Msa0056140:intron | 40.0% | |
| ATATCGTCGATCTAGTTGAG+TGG | - | chr1_2:11632550-11632569 | None:intergenic | 40.0% | |
| ! | GAGACTGAATTGATAGCAAG+TGG | + | chr1_2:11632639-11632658 | Msa0056140:intron | 40.0% |
| AGAGCTACCTAAACAAGTCA+GGG | + | chr1_2:11632810-11632829 | Msa0056140:intron | 40.0% | |
| ATGCGTATGGAGAAGTTGAA+GGG | + | chr1_2:11633059-11633078 | Msa0056140:five_prime_UTR | 40.0% | |
| CAAACTTAAAGAGGCCTACT+TGG | + | chr1_2:11633167-11633186 | Msa0056140:CDS | 40.0% | |
| TAAACAAAGAACACGTCGAG+GGG | - | chr1_2:11633261-11633280 | None:intergenic | 40.0% | |
| GTTAAACAAAGAACACGTCG+AGG | - | chr1_2:11633263-11633282 | None:intergenic | 40.0% | |
| TCTCAAGGTTGTAGTGTTGT+TGG | + | chr1_2:11633283-11633302 | Msa0056140:CDS | 40.0% | |
| CCGAGATTCAGTCTCTTTAT+CGG | - | chr1_2:11633362-11633381 | None:intergenic | 40.0% | |
| CCGATAAAGAGACTGAATCT+CGG | + | chr1_2:11633359-11633378 | Msa0056140:CDS | 40.0% | |
| CGATAAAGAGACTGAATCTC+GGG | + | chr1_2:11633360-11633379 | Msa0056140:CDS | 40.0% | |
| GTACTATGCTGTTCAAAGCA+CGG | + | chr1_2:11633405-11633424 | Msa0056140:CDS | 40.0% | |
| !! | CATTACCTTTTGAGAAGCTC+TGG | + | chr1_2:11633464-11633483 | Msa0056140:CDS | 40.0% |
| ! | AAGAGTGTGGTCTATGGAAT+AGG | - | chr1_2:11633517-11633536 | None:intergenic | 40.0% |
| AGACGTGAAATCTAAGAGTG+TGG | - | chr1_2:11633530-11633549 | None:intergenic | 40.0% | |
| AAATAGGGGCTGACATGTAT+CGG | - | chr1_2:11633797-11633816 | None:intergenic | 40.0% | |
| TGTCTCGTCCAACAAAATAG+GGG | - | chr1_2:11633811-11633830 | None:intergenic | 40.0% | |
| GATGTCTCGTCCAACAAAAT+AGG | - | chr1_2:11633813-11633832 | None:intergenic | 40.0% | |
| ACAGGGAAATTTCTGCTCAA+AGG | - | chr1_2:11634201-11634220 | None:intergenic | 40.0% | |
| TAGTTGGAACTCGTTGAACT+AGG | + | chr1_2:11634232-11634251 | Msa0056140:intron | 40.0% | |
| !! | GCTTTGAAGAACATCTCGAA+TGG | + | chr1_2:11634515-11634534 | Msa0056140:intron | 40.0% |
| CATCTCGAATGGTGTTTCTT+AGG | + | chr1_2:11634526-11634545 | Msa0056140:intron | 40.0% | |
| GGGAAGAATTTCTATGGTTG+AGG | + | chr1_2:11634990-11635009 | Msa0056140:CDS | 40.0% | |
| GGTATACAGCTGAAGCAAAA+AGG | - | chr1_2:11635299-11635318 | None:intergenic | 40.0% | |
| !! | CAAGTGTCAGCTTTATTGAC+AGG | + | chr1_2:11635360-11635379 | Msa0056140:CDS | 40.0% |
| GTTGCCTGAAGTAGAAAAGA+AGG | + | chr1_2:11635570-11635589 | Msa0056140:CDS | 40.0% | |
| TACAGTGGTTCTCGATGAAA+CGG | + | chr1_2:11635744-11635763 | Msa0056140:intron | 40.0% | |
| ATACGCCAAACAAGTTAGCA+GGG | - | chr1_2:11636112-11636131 | None:intergenic | 40.0% | |
| ! | ACATATGTTGATTGGTCCGA+AGG | + | chr1_2:11636174-11636193 | Msa0056140:CDS | 40.0% |
| ! | TTGATTGGTCCGAAGGAAAA+TGG | + | chr1_2:11636181-11636200 | Msa0056140:CDS | 40.0% |
| GGTAGAATGTTTAGACTTCC+TGG | - | chr1_2:11636391-11636410 | None:intergenic | 40.0% | |
| GCTTACAAGGATAACTAGGA+AGG | - | chr1_2:11636599-11636618 | None:intergenic | 40.0% | |
| AAACTCAGCAAGACTAACTG+AGG | - | chr1_2:11636651-11636670 | None:intergenic | 40.0% | |
| GACCTTAGAACCAAAACTAG+AGG | - | chr1_2:11637176-11637195 | None:intergenic | 40.0% | |
| ACATGTCTTACAGAGAACAG+TGG | + | chr1_2:11637265-11637284 | Msa0056140:intron | 40.0% | |
| ATTGCACCTTGCGAGTTAAA+TGG | + | chr1_2:11637290-11637309 | Msa0056140:CDS | 40.0% | |
| TTTGAGCCATTTAACTCGCA+AGG | - | chr1_2:11637299-11637318 | None:intergenic | 40.0% | |
| !! | ATTTGCCCGGAAGTTTTATC+CGG | + | chr1_2:11637334-11637353 | Msa0056140:CDS | 40.0% |
| AGTTTCCGGATAAAACTTCC+GGG | - | chr1_2:11637342-11637361 | None:intergenic | 40.0% | |
| GAGTTTCCGGATAAAACTTC+CGG | - | chr1_2:11637343-11637362 | None:intergenic | 40.0% | |
| TATGTGCGAAAGATGGTTCT+GGG | - | chr1_2:11637460-11637479 | None:intergenic | 40.0% | |
| TATGTCGTATGTGCGAAAGA+TGG | - | chr1_2:11637467-11637486 | None:intergenic | 40.0% | |
| TTATTTGGAGAAGTTCCCGA+CGG | + | chr1_2:11637489-11637508 | Msa0056140:three_prime_UTR | 40.0% | |
| TTATCTAACCAGACAAGCTC+AGG | - | chr1_2:11637585-11637604 | None:intergenic | 40.0% | |
| GTATTCTTGATAGGCTAGAG+AGG | + | chr1_2:11637694-11637713 | Msa0056140:three_prime_UTR | 40.0% | |
| ! | GTTGCTGTGCTACTAAGTTC+AGG | - | chr1_2:11631703-11631722 | None:intergenic | 45.0% |
| GAGAACGTTGATACCAGTGT+AGG | - | chr1_2:11631845-11631864 | None:intergenic | 45.0% | |
| ! | GTGTCGTGTTTGGATTGGAT+CGG | - | chr1_2:11631893-11631912 | None:intergenic | 45.0% |
| !! | ACGTTGGTGTTGTGTGTTTG+GGG | - | chr1_2:11631919-11631938 | None:intergenic | 45.0% |
| !! | CAACGTTGGTGTTGTGTGTT+TGG | - | chr1_2:11631921-11631940 | None:intergenic | 45.0% |
| !! | GTCTCTAGGATACTCTCAGA+AGG | - | chr1_2:11632624-11632643 | None:intergenic | 45.0% |
| GAGAGCTACCTAAACAAGTC+AGG | + | chr1_2:11632809-11632828 | Msa0056140:intron | 45.0% | |
| CAAGTCAGGGACTAATTTGG+TGG | + | chr1_2:11632823-11632842 | Msa0056140:intron | 45.0% | |
| GATGCGTATGGAGAAGTTGA+AGG | + | chr1_2:11633058-11633077 | Msa0056140:five_prime_UTR | 45.0% | |
| TGCGTATGGAGAAGTTGAAG+GGG | + | chr1_2:11633060-11633079 | Msa0056140:five_prime_UTR | 45.0% | |
| AAACAAAGAACACGTCGAGG+GGG | - | chr1_2:11633260-11633279 | None:intergenic | 45.0% | |
| ! | CAAGGTTGTAGTGTTGTTGG+TGG | + | chr1_2:11633286-11633305 | Msa0056140:CDS | 45.0% |
| GTATGCCAGAGCTTCTCAAA+AGG | - | chr1_2:11633472-11633491 | None:intergenic | 45.0% | |
| AAACTAATGCAGGGCCATGA+AGG | + | chr1_2:11633734-11633753 | Msa0056140:intron | 45.0% | |
| ! | CATGTCAGCCCCTATTTTGT+TGG | + | chr1_2:11633800-11633819 | Msa0056140:CDS | 45.0% |
| TGATGAGCTATACCCCATAC+CGG | - | chr1_2:11633845-11633864 | None:intergenic | 45.0% | |
| ! | ATCTAATCACGCAAGGCACT+AGG | + | chr1_2:11634313-11634332 | Msa0056140:intron | 45.0% |
| ! | TCTAATCACGCAAGGCACTA+GGG | + | chr1_2:11634314-11634333 | Msa0056140:intron | 45.0% |
| TCTTAGTAGCTAGTGCCAAC+TGG | + | chr1_2:11634942-11634961 | Msa0056140:intron | 45.0% | |
| TTTCTATGGTTGAGGCGGAA+AGG | + | chr1_2:11634998-11635017 | Msa0056140:CDS | 45.0% | |
| GGTATACAGCTGAAGCAGAA+AGG | - | chr1_2:11635165-11635184 | None:intergenic | 45.0% | |
| ACAAAATCAAAGCGGCTCAC+TGG | - | chr1_2:11635186-11635205 | None:intergenic | 45.0% | |
| ! | ACATACCTGCCATTTCCATG+CGG | - | chr1_2:11635541-11635560 | None:intergenic | 45.0% |
| ! | GGATTTTCGAAAGGGTTCAC+AGG | + | chr1_2:11635591-11635610 | Msa0056140:CDS | 45.0% |
| GCAGCACGCTCTAATAGTTA+TGG | + | chr1_2:11635766-11635785 | Msa0056140:CDS | 45.0% | |
| TTGCGGTTTCCCTCCATATT+CGG | - | chr1_2:11635994-11636013 | None:intergenic | 45.0% | |
| GCTCATCAGAATAGCAGTTG+CGG | - | chr1_2:11636011-11636030 | None:intergenic | 45.0% | |
| !! | TCTCTCCCTGCTAACTTGTT+TGG | + | chr1_2:11636104-11636123 | Msa0056140:intron | 45.0% |
| CATACGCCAAACAAGTTAGC+AGG | - | chr1_2:11636113-11636132 | None:intergenic | 45.0% | |
| GTTTAGATGCTTGATCCAGG+CGG | + | chr1_2:11636132-11636151 | Msa0056140:intron | 45.0% | |
| GGTCGGTGACATATGTTGAT+TGG | + | chr1_2:11636166-11636185 | Msa0056140:CDS | 45.0% | |
| !!! | CCTAGGATGCCATTTTCCTT+CGG | - | chr1_2:11636193-11636212 | None:intergenic | 45.0% |
| AATGGCATCCTAGGTCATTC+AGG | + | chr1_2:11636199-11636218 | Msa0056140:CDS | 45.0% | |
| ATGGCATCCTAGGTCATTCA+GGG | + | chr1_2:11636200-11636219 | Msa0056140:CDS | 45.0% | |
| ACAAGGCTAACTAACTACGC+TGG | - | chr1_2:11636676-11636695 | None:intergenic | 45.0% | |
| !! | GCGTAGTTAGTTAGCCTTGT+TGG | + | chr1_2:11636676-11636695 | Msa0056140:intron | 45.0% |
| AGATCACGGGATCATGAAGT+TGG | - | chr1_2:11636777-11636796 | None:intergenic | 45.0% | |
| AAAAAAGAGGTCCGGCTAAC+AGG | - | chr1_2:11636987-11637006 | None:intergenic | 45.0% | |
| ! | ATGTGCGAAAGATGGTTCTG+GGG | - | chr1_2:11637459-11637478 | None:intergenic | 45.0% |
| GTATGTGCGAAAGATGGTTC+TGG | - | chr1_2:11637461-11637480 | None:intergenic | 45.0% | |
| TTTCCTGGGGCTTGATGAAA+TGG | + | chr1_2:11637555-11637574 | Msa0056140:three_prime_UTR | 45.0% | |
| !!! | AAAATTATATTTTACTATTA+AGG | - | chr1_2:11634562-11634581 | None:intergenic | 5.0% |
| !!! | TTAATAGTAAAATATAATTT+TGG | + | chr1_2:11634561-11634580 | Msa0056140:intron | 5.0% |
| !! | ACATAAAAATAAATAAATAA+AGG | + | chr1_2:11634870-11634889 | Msa0056140:intron | 5.0% |
| ! | TCGTGTTTGGATTGGATCGG+TGG | - | chr1_2:11631890-11631909 | None:intergenic | 50.0% |
| !! | CGTTGGTGTTGTGTGTTTGG+GGG | - | chr1_2:11631918-11631937 | None:intergenic | 50.0% |
| GGGGCGTAATCGATAGAAAG+TGG | + | chr1_2:11632737-11632756 | Msa0056140:intron | 50.0% | |
| GTGAATTCCCGAGTCTGTAC+GGG | - | chr1_2:11633340-11633359 | None:intergenic | 50.0% | |
| GGTGAATTCCCGAGTCTGTA+CGG | - | chr1_2:11633341-11633360 | None:intergenic | 50.0% | |
| GCTCTGGCATACATTCTTCC+AGG | + | chr1_2:11633480-11633499 | Msa0056140:CDS | 50.0% | |
| ACGAGACATCCACAGTGAAC+CGG | + | chr1_2:11633823-11633842 | Msa0056140:CDS | 50.0% | |
| ACATCCACAGTGAACCGGTA+TGG | + | chr1_2:11633828-11633847 | Msa0056140:intron | 50.0% | |
| CATCCACAGTGAACCGGTAT+GGG | + | chr1_2:11633829-11633848 | Msa0056140:intron | 50.0% | |
| ATCCACAGTGAACCGGTATG+GGG | + | chr1_2:11633830-11633849 | Msa0056140:intron | 50.0% | |
| ! | TGAGGCGGAAAGGAGACTTT+TGG | + | chr1_2:11635008-11635027 | Msa0056140:CDS | 50.0% |
| ACAAAATCAAAGCGGCGCAC+TGG | - | chr1_2:11635320-11635339 | None:intergenic | 50.0% | |
| AGTTAGCAGGGAGAGAGAGA+TGG | - | chr1_2:11636100-11636119 | None:intergenic | 50.0% | |
| ATCCAGGCGGAATCGCAAAT+TGG | + | chr1_2:11636145-11636164 | Msa0056140:CDS | 50.0% | |
| AGGCGGAATCGCAAATTGGT+CGG | + | chr1_2:11636149-11636168 | Msa0056140:CDS | 50.0% | |
| CCGAAGGAAAATGGCATCCT+AGG | + | chr1_2:11636190-11636209 | Msa0056140:CDS | 50.0% | |
| !! | AGATGGTTCTGGGGACCATA+TGG | - | chr1_2:11637450-11637469 | None:intergenic | 50.0% |
| GTTCCATTTCATCAAGCCCC+AGG | - | chr1_2:11637561-11637580 | None:intergenic | 50.0% | |
| ATGGAACTCCTGAGCTTGTC+TGG | + | chr1_2:11637574-11637593 | Msa0056140:three_prime_UTR | 50.0% | |
| TCTTGATAGGCTAGAGAGGG+AGG | + | chr1_2:11637698-11637717 | Msa0056140:three_prime_UTR | 50.0% | |
| CTTGATAGGCTAGAGAGGGA+GGG | + | chr1_2:11637699-11637718 | Msa0056140:three_prime_UTR | 50.0% | |
| AGAGAGGGAGGGATAAGGTT+TGG | + | chr1_2:11637710-11637729 | Msa0056140:three_prime_UTR | 50.0% | |
| !! | GGGTGGTGTCGTGTTTGGAT+TGG | - | chr1_2:11631898-11631917 | None:intergenic | 55.0% |
| !! | TTTGGGGGTGGTGTCGTGTT+TGG | - | chr1_2:11631903-11631922 | None:intergenic | 55.0% |
| !! | TGGTGTTGTGTGTTTGGGGG+TGG | - | chr1_2:11631915-11631934 | None:intergenic | 55.0% |
| AATTCCCGAGTCTGTACGGG+TGG | - | chr1_2:11633337-11633356 | None:intergenic | 55.0% | |
| !! | TACCCCATACCGGTTCACTG+TGG | - | chr1_2:11633835-11633854 | None:intergenic | 55.0% |
| TATGTGGATACCGGTCCGCA+TGG | + | chr1_2:11635523-11635542 | Msa0056140:CDS | 55.0% | |
| GATACCGGTCCGCATGGAAA+TGG | + | chr1_2:11635529-11635548 | Msa0056140:CDS | 55.0% | |
| GACCAATTTGCGATTCCGCC+TGG | - | chr1_2:11636150-11636169 | None:intergenic | 55.0% | |
| TCACGAGCCCTGAATGACCT+AGG | - | chr1_2:11636210-11636229 | None:intergenic | 55.0% | |
| !! | ATCTAGGGGCACCTGTTAGC+CGG | + | chr1_2:11636973-11636992 | Msa0056140:intron | 55.0% |
| TATCCATCAGCCTCAGCCGT+CGG | - | chr1_2:11637508-11637527 | None:intergenic | 55.0% | |
| AGGCTAGAGAGGGAGGGATA+AGG | + | chr1_2:11637705-11637724 | Msa0056140:three_prime_UTR | 55.0% | |
| AGCCACCACCCGTACAGACT+CGG | + | chr1_2:11633329-11633348 | Msa0056140:CDS | 60.0% | |
| ! | CCTGCCATTTCCATGCGGAC+CGG | - | chr1_2:11635536-11635555 | None:intergenic | 60.0% |
| ATCCATCAGCCTCAGCCGTC+GGG | - | chr1_2:11637507-11637526 | None:intergenic | 60.0% | |
| GCCACCACCCGTACAGACTC+GGG | + | chr1_2:11633330-11633349 | Msa0056140:CDS | 65.0% | |
| TCCCGAGTCTGTACGGGTGG+TGG | - | chr1_2:11633334-11633353 | None:intergenic | 65.0% | |
| CCGGTCCGCATGGAAATGGC+AGG | + | chr1_2:11635533-11635552 | Msa0056140:CDS | 65.0% | |
| GGAGAAGTTCCCGACGGCTG+AGG | + | chr1_2:11637495-11637514 | Msa0056140:three_prime_UTR | 65.0% | |
| TTCCCGACGGCTGAGGCTGA+TGG | + | chr1_2:11637502-11637521 | Msa0056140:three_prime_UTR | 65.0% | |
| GTCGAGGGGGAGCTCTGCAG+CGG | - | chr1_2:11633247-11633266 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 11631689 | 11637913 | 11631689 | ID=Msa0056140;Name=Msa0056140 |
| chr1_2 | mRNA | 11631689 | 11637913 | 11631689 | ID=Msa0056140-mRNA-1;Parent=Msa0056140;Name=Msa0056140-mRNA-1;_AED=0.18;_eAED=0.18;_QI=378|1|1|1|0.9|0.81|11|507|400 |
| chr1_2 | exon | 11631689 | 11631992 | 11631689 | ID=Msa0056140-mRNA-1:exon:4443;Parent=Msa0056140-mRNA-1 |
| chr1_2 | exon | 11633023 | 11633501 | 11633023 | ID=Msa0056140-mRNA-1:exon:4444;Parent=Msa0056140-mRNA-1 |
| chr1_2 | exon | 11633746 | 11633844 | 11633746 | ID=Msa0056140-mRNA-1:exon:4445;Parent=Msa0056140-mRNA-1 |
| chr1_2 | exon | 11634982 | 11635082 | 11634982 | ID=Msa0056140-mRNA-1:exon:4446;Parent=Msa0056140-mRNA-1 |
| chr1_2 | exon | 11635310 | 11635381 | 11635310 | ID=Msa0056140-mRNA-1:exon:4447;Parent=Msa0056140-mRNA-1 |
| chr1_2 | exon | 11635522 | 11635612 | 11635522 | ID=Msa0056140-mRNA-1:exon:4448;Parent=Msa0056140-mRNA-1 |
| chr1_2 | exon | 11635749 | 11635829 | 11635749 | ID=Msa0056140-mRNA-1:exon:4449;Parent=Msa0056140-mRNA-1 |
| chr1_2 | exon | 11635991 | 11636053 | 11635991 | ID=Msa0056140-mRNA-1:exon:4450;Parent=Msa0056140-mRNA-1 |
| chr1_2 | exon | 11636138 | 11636260 | 11636138 | ID=Msa0056140-mRNA-1:exon:4451;Parent=Msa0056140-mRNA-1 |
| chr1_2 | exon | 11637114 | 11637152 | 11637114 | ID=Msa0056140-mRNA-1:exon:4452;Parent=Msa0056140-mRNA-1 |
| chr1_2 | exon | 11637278 | 11637913 | 11637278 | ID=Msa0056140-mRNA-1:exon:4453;Parent=Msa0056140-mRNA-1 |
| chr1_2 | five_prime_UTR | 11631689 | 11631992 | 11631689 | ID=Msa0056140-mRNA-1:five_prime_utr;Parent=Msa0056140-mRNA-1 |
| chr1_2 | five_prime_UTR | 11633023 | 11633096 | 11633023 | ID=Msa0056140-mRNA-1:five_prime_utr;Parent=Msa0056140-mRNA-1 |
| chr1_2 | CDS | 11633097 | 11633501 | 11633097 | ID=Msa0056140-mRNA-1:cds;Parent=Msa0056140-mRNA-1 |
| chr1_2 | CDS | 11633746 | 11633844 | 11633746 | ID=Msa0056140-mRNA-1:cds;Parent=Msa0056140-mRNA-1 |
| chr1_2 | CDS | 11634982 | 11635082 | 11634982 | ID=Msa0056140-mRNA-1:cds;Parent=Msa0056140-mRNA-1 |
| chr1_2 | CDS | 11635310 | 11635381 | 11635310 | ID=Msa0056140-mRNA-1:cds;Parent=Msa0056140-mRNA-1 |
| chr1_2 | CDS | 11635522 | 11635612 | 11635522 | ID=Msa0056140-mRNA-1:cds;Parent=Msa0056140-mRNA-1 |
| chr1_2 | CDS | 11635749 | 11635829 | 11635749 | ID=Msa0056140-mRNA-1:cds;Parent=Msa0056140-mRNA-1 |
| chr1_2 | CDS | 11635991 | 11636053 | 11635991 | ID=Msa0056140-mRNA-1:cds;Parent=Msa0056140-mRNA-1 |
| chr1_2 | CDS | 11636138 | 11636260 | 11636138 | ID=Msa0056140-mRNA-1:cds;Parent=Msa0056140-mRNA-1 |
| chr1_2 | CDS | 11637114 | 11637152 | 11637114 | ID=Msa0056140-mRNA-1:cds;Parent=Msa0056140-mRNA-1 |
| chr1_2 | CDS | 11637278 | 11637406 | 11637278 | ID=Msa0056140-mRNA-1:cds;Parent=Msa0056140-mRNA-1 |
| chr1_2 | three_prime_UTR | 11637407 | 11637913 | 11637407 | ID=Msa0056140-mRNA-1:three_prime_utr;Parent=Msa0056140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
