Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0158900 | XP_013467371.1 | 99.697 | 330 | 1 | 0 | 1 | 330 | 1 | 330 | 0.0 | 679 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0158900 | sp|P49730|RIR2_TOBAC | 85.455 | 330 | 47 | 1 | 1 | 330 | 1 | 329 | 0.0 | 587 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0158900 | A0A072VJ25 | 99.697 | 330 | 1 | 0 | 1 | 330 | 1 | 330 | 0.0 | 679 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005020 | Msa0158900 | 0.811691 | 6.166828e-51 | -8.615850e-47 |
| Msa0006840 | Msa0158900 | 0.806527 | 7.877787e-50 | -8.615850e-47 |
| Msa0007800 | Msa0158900 | 0.806725 | 7.153763e-50 | -8.615850e-47 |
| Msa0015570 | Msa0158900 | 0.826824 | 2.194997e-54 | -8.615850e-47 |
| Msa0016040 | Msa0158900 | 0.804787 | 1.826688e-49 | -8.615850e-47 |
| Msa0016530 | Msa0158900 | 0.807418 | 5.103093e-50 | -8.615850e-47 |
| Msa0018920 | Msa0158900 | 0.823312 | 1.482556e-53 | -8.615850e-47 |
| Msa0019930 | Msa0158900 | 0.827785 | 1.291245e-54 | -8.615850e-47 |
| Msa0020540 | Msa0158900 | 0.823227 | 1.551552e-53 | -8.615850e-47 |
| Msa0027800 | Msa0158900 | 0.830508 | 2.822989e-55 | -8.615850e-47 |
| Msa0030070 | Msa0158900 | 0.843945 | 1.025261e-58 | -8.615850e-47 |
| Msa0032980 | Msa0158900 | 0.843533 | 1.321484e-58 | -8.615850e-47 |
| Msa0040640 | Msa0158900 | 0.835273 | 1.847064e-56 | -8.615850e-47 |
| Msa0050150 | Msa0158900 | 0.813010 | 3.178006e-51 | -8.615850e-47 |
| Msa0050530 | Msa0158900 | 0.829842 | 4.106155e-55 | -8.615850e-47 |
| Msa0053070 | Msa0158900 | 0.812691 | 3.732070e-51 | -8.615850e-47 |
| Msa0057640 | Msa0158900 | 0.818317 | 2.088256e-52 | -8.615850e-47 |
| Msa0062340 | Msa0158900 | 0.832685 | 8.209997e-56 | -8.615850e-47 |
| Msa0067060 | Msa0158900 | 0.804277 | 2.333201e-49 | -8.615850e-47 |
| Msa0067380 | Msa0158900 | 0.876720 | 1.115250e-68 | -8.615850e-47 |
| Msa0072520 | Msa0158900 | 0.816374 | 5.714893e-52 | -8.615850e-47 |
| Msa0078130 | Msa0158900 | 0.826252 | 3.004039e-54 | -8.615850e-47 |
| Msa0090440 | Msa0158900 | 0.812340 | 4.453648e-51 | -8.615850e-47 |
| Msa0091350 | Msa0158900 | 0.866250 | 3.271796e-65 | -8.615850e-47 |
| Msa0093860 | Msa0158900 | 0.811119 | 8.210569e-51 | -8.615850e-47 |
| Msa0094180 | Msa0158900 | 0.832878 | 7.351458e-56 | -8.615850e-47 |
| Msa0098410 | Msa0158900 | 0.829309 | 5.532744e-55 | -8.615850e-47 |
| Msa0100600 | Msa0158900 | 0.834591 | 2.743527e-56 | -8.615850e-47 |
| Msa0100890 | Msa0158900 | 0.808237 | 3.418010e-50 | -8.615850e-47 |
| Msa0106630 | Msa0158900 | 0.837348 | 5.481757e-57 | -8.615850e-47 |
| Msa0109730 | Msa0158900 | 0.821016 | 5.051547e-53 | -8.615850e-47 |
| Msa0110200 | Msa0158900 | 0.823415 | 1.402437e-53 | -8.615850e-47 |
| Msa0112670 | Msa0158900 | 0.807374 | 5.214091e-50 | -8.615850e-47 |
| Msa0113410 | Msa0158900 | 0.853686 | 2.028088e-61 | -8.615850e-47 |
| Msa0125590 | Msa0158900 | 0.858458 | 8.123874e-63 | -8.615850e-47 |
| Msa0127340 | Msa0158900 | 0.860815 | 1.587861e-63 | -8.615850e-47 |
| Msa0127680 | Msa0158900 | 0.806458 | 8.144725e-50 | -8.615850e-47 |
| Msa0140380 | Msa0158900 | 0.823479 | 1.354726e-53 | -8.615850e-47 |
| Msa0141640 | Msa0158900 | 0.803454 | 3.458885e-49 | -8.615850e-47 |
| Msa0153210 | Msa0158900 | 0.841512 | 4.542734e-58 | -8.615850e-47 |
| Msa0156050 | Msa0158900 | 0.819632 | 1.048904e-52 | -8.615850e-47 |
| Msa0156090 | Msa0158900 | 0.825347 | 4.925788e-54 | -8.615850e-47 |
| Msa0158900 | Msa0159590 | 0.817879 | 2.622545e-52 | -8.615850e-47 |
| Msa0158900 | Msa0159620 | 0.807945 | 3.944308e-50 | -8.615850e-47 |
| Msa0158900 | Msa0160160 | 0.808933 | 2.428182e-50 | -8.615850e-47 |
| Msa0158900 | Msa0160170 | 0.815353 | 9.656016e-52 | -8.615850e-47 |
| Msa0158900 | Msa0165830 | 0.840513 | 8.309453e-58 | -8.615850e-47 |
| Msa0158900 | Msa0170070 | 0.876933 | 9.414692e-69 | -8.615850e-47 |
| Msa0158900 | Msa0184700 | 0.827629 | 1.408098e-54 | -8.615850e-47 |
| Msa0158900 | Msa0186180 | 0.839334 | 1.686001e-57 | -8.615850e-47 |
| Msa0158900 | Msa0186360 | 0.803231 | 3.848480e-49 | -8.615850e-47 |
| Msa0158900 | Msa0204970 | 0.849179 | 3.817485e-60 | -8.615850e-47 |
| Msa0158900 | Msa0225800 | 0.870607 | 1.284120e-66 | -8.615850e-47 |
| Msa0158900 | Msa0249870 | 0.841623 | 4.248352e-58 | -8.615850e-47 |
| Msa0158900 | Msa0260570 | 0.822498 | 2.293577e-53 | -8.615850e-47 |
| Msa0158900 | Msa0260630 | 0.853187 | 2.819896e-61 | -8.615850e-47 |
| Msa0158900 | Msa0272260 | 0.804252 | 2.362177e-49 | -8.615850e-47 |
| Msa0158900 | Msa0281540 | 0.854308 | 1.341669e-61 | -8.615850e-47 |
| Msa0158900 | Msa0320250 | 0.804793 | 1.821780e-49 | -8.615850e-47 |
| Msa0158900 | Msa0320270 | 0.804118 | 2.519000e-49 | -8.615850e-47 |
| Msa0158900 | Msa0320290 | 0.811711 | 6.106297e-51 | -8.615850e-47 |
| Msa0158900 | Msa0320580 | 0.862857 | 3.766203e-64 | -8.615850e-47 |
| Msa0158900 | Msa0341680 | 0.822916 | 1.833288e-53 | -8.615850e-47 |
| Msa0158900 | Msa0344110 | 0.865141 | 7.320546e-65 | -8.615850e-47 |
| Msa0158900 | Msa0368860 | 0.811194 | 7.907208e-51 | -8.615850e-47 |
| Msa0158900 | Msa0373170 | 0.868011 | 8.963408e-66 | -8.615850e-47 |
| Msa0158900 | Msa0373590 | 0.805889 | 1.073667e-49 | -8.615850e-47 |
| Msa0158900 | Msa0381730 | 0.801254 | 9.819665e-49 | -8.615850e-47 |
| Msa0158900 | Msa0382230 | 0.855469 | 6.179105e-62 | -8.615850e-47 |
| Msa0158900 | Msa0383000 | 0.819810 | 9.550348e-53 | -8.615850e-47 |
| Msa0158900 | Msa0383940 | 0.803938 | 2.745053e-49 | -8.615850e-47 |
| Msa0158900 | Msa0392570 | 0.808474 | 3.043054e-50 | -8.615850e-47 |
| Msa0158900 | Msa0404770 | 0.833109 | 6.439282e-56 | -8.615850e-47 |
| Msa0158900 | Msa0412130 | 0.847856 | 8.872210e-60 | -8.615850e-47 |
| Msa0158900 | Msa0413170 | 0.814827 | 1.263726e-51 | -8.615850e-47 |
| Msa0158900 | Msa0415820 | 0.853088 | 3.011052e-61 | -8.615850e-47 |
| Msa0158900 | Msa0416160 | 0.846896 | 1.628594e-59 | -8.615850e-47 |
| Msa0158900 | Msa0420430 | 0.838025 | 3.673436e-57 | -8.615850e-47 |
| Msa0158900 | Msa0420670 | 0.803505 | 3.375995e-49 | -8.615850e-47 |
| Msa0158900 | Msa0421130 | 0.839199 | 1.827961e-57 | -8.615850e-47 |
| Msa0158900 | Msa0421750 | 0.873010 | 2.047841e-67 | -8.615850e-47 |
| Msa0158900 | Msa0429970 | 0.827616 | 1.417638e-54 | -8.615850e-47 |
| Msa0158900 | Msa0431740 | 0.805900 | 1.067923e-49 | -8.615850e-47 |
| Msa0158900 | Msa0432010 | 0.802661 | 5.046299e-49 | -8.615850e-47 |
| Msa0158900 | Msa0433150 | 0.806828 | 6.803787e-50 | -8.615850e-47 |
| Msa0158900 | Msa0433760 | 0.850277 | 1.884483e-60 | -8.615850e-47 |
| Msa0158900 | Msa0434360 | 0.802804 | 4.713917e-49 | -8.615850e-47 |
| Msa0158900 | Msa0456670 | 0.818805 | 1.617812e-52 | -8.615850e-47 |
| Msa0158900 | Msa0461550 | 0.836248 | 1.045869e-56 | -8.615850e-47 |
| Msa0158900 | Msa0462780 | 0.805903 | 1.066337e-49 | -8.615850e-47 |
| Msa0158900 | Msa0466520 | 0.873635 | 1.262489e-67 | -8.615850e-47 |
| Msa0158900 | Msa0466880 | 0.826389 | 2.786250e-54 | -8.615850e-47 |
| Msa0158900 | Msa0467690 | 0.872750 | 2.501835e-67 | -8.615850e-47 |
| Msa0158900 | Msa0468620 | 0.804384 | 2.217317e-49 | -8.615850e-47 |
| Msa0158900 | Msa0477630 | 0.841878 | 3.638612e-58 | -8.615850e-47 |
| Msa0158900 | Msa0478140 | 0.864339 | 1.305351e-64 | -8.615850e-47 |
| Msa0158900 | Msa0478200 | 0.856055 | 4.166805e-62 | -8.615850e-47 |
| Msa0158900 | Msa0480730 | 0.815638 | 8.343988e-52 | -8.615850e-47 |
| Msa0158900 | Msa0485980 | 0.810516 | 1.108677e-50 | -8.615850e-47 |
| Msa0158900 | Msa0503990 | 0.823710 | 1.196024e-53 | -8.615850e-47 |
| Msa0158900 | Msa0506880 | 0.848213 | 7.073868e-60 | -8.615850e-47 |
| Msa0158900 | Msa0507810 | 0.849462 | 3.185087e-60 | -8.615850e-47 |
| Msa0158900 | Msa0507820 | 0.856225 | 3.716032e-62 | -8.615850e-47 |
| Msa0158900 | Msa0507920 | 0.844892 | 5.703102e-59 | -8.615850e-47 |
| Msa0158900 | Msa0512530 | 0.809155 | 2.175481e-50 | -8.615850e-47 |
| Msa0158900 | Msa0513080 | 0.831017 | 2.118952e-55 | -8.615850e-47 |
| Msa0158900 | Msa0513560 | 0.813029 | 3.147618e-51 | -8.615850e-47 |
| Msa0158900 | Msa0513620 | 0.813157 | 2.950474e-51 | -8.615850e-47 |
| Msa0158900 | Msa0513640 | 0.800244 | 1.578450e-48 | -8.615850e-47 |
| Msa0158900 | Msa0514020 | 0.870932 | 1.004319e-66 | -8.615850e-47 |
| Msa0158900 | Msa0514500 | 0.801304 | 9.590197e-49 | -8.615850e-47 |
| Msa0158900 | Msa0520680 | 0.854782 | 9.785670e-62 | -8.615850e-47 |
| Msa0158900 | Msa0520870 | 0.832255 | 1.049217e-55 | -8.615850e-47 |
| Msa0158900 | Msa0521680 | 0.846111 | 2.666836e-59 | -8.615850e-47 |
| Msa0158900 | Msa0527850 | 0.871102 | 8.820970e-67 | -8.615850e-47 |
| Msa0158900 | Msa0534100 | 0.801337 | 9.441646e-49 | -8.615850e-47 |
| Msa0158900 | Msa0541740 | 0.860780 | 1.627002e-63 | -8.615850e-47 |
| Msa0158900 | Msa0544410 | 0.853898 | 1.762486e-61 | -8.615850e-47 |
| Msa0158900 | Msa0544430 | 0.811299 | 7.506231e-51 | -8.615850e-47 |
| Msa0158900 | Msa0548000 | 0.815543 | 8.761917e-52 | -8.615850e-47 |
| Msa0158900 | Msa0550590 | 0.831632 | 1.495551e-55 | -8.615850e-47 |
| Msa0158900 | Msa0554300 | 0.861876 | 7.537366e-64 | -8.615850e-47 |
| Msa0158900 | Msa0557850 | 0.809317 | 2.008280e-50 | -8.615850e-47 |
| Msa0158900 | Msa0559100 | 0.806242 | 9.047230e-50 | -8.615850e-47 |
| Msa0158900 | Msa0561560 | 0.844038 | 9.680372e-59 | -8.615850e-47 |
| Msa0158900 | Msa0563900 | 0.845472 | 3.975694e-59 | -8.615850e-47 |
| Msa0158900 | Msa0564980 | 0.844084 | 9.411746e-59 | -8.615850e-47 |
| Msa0158900 | Msa0569530 | 0.805890 | 1.072743e-49 | -8.615850e-47 |
| Msa0158900 | Msa0572830 | 0.883311 | 4.995937e-71 | -8.615850e-47 |
| Msa0158900 | Msa0575710 | 0.806565 | 7.732562e-50 | -8.615850e-47 |
| Msa0158900 | Msa0577280 | 0.822055 | 2.906518e-53 | -8.615850e-47 |
| Msa0158900 | Msa0577330 | 0.826594 | 2.490648e-54 | -8.615850e-47 |
| Msa0158900 | Msa0577450 | 0.804938 | 1.698995e-49 | -8.615850e-47 |
| Msa0158900 | Msa0582460 | 0.869564 | 2.817545e-66 | -8.615850e-47 |
| Msa0158900 | Msa0586200 | 0.875643 | 2.621767e-68 | -8.615850e-47 |
| Msa0158900 | Msa0590200 | 0.811129 | 8.168263e-51 | -8.615850e-47 |
| Msa0158900 | Msa0606100 | 0.811889 | 5.585693e-51 | -8.615850e-47 |
| Msa0158900 | Msa0607330 | 0.815801 | 7.674346e-52 | -8.615850e-47 |
| Msa0158900 | Msa0607800 | 0.839075 | 1.967860e-57 | -8.615850e-47 |
| Msa0158900 | Msa0608350 | 0.843738 | 1.164771e-58 | -8.615850e-47 |
| Msa0158900 | Msa0612410 | 0.827031 | 1.958452e-54 | -8.615850e-47 |
| Msa0158900 | Msa0612520 | 0.806957 | 6.390701e-50 | -8.615850e-47 |
| Msa0158900 | Msa0613630 | 0.816510 | 5.328962e-52 | -8.615850e-47 |
| Msa0158900 | Msa0615630 | 0.839500 | 1.526526e-57 | -8.615850e-47 |
| Msa0158900 | Msa0620500 | 0.844359 | 7.937379e-59 | -8.615850e-47 |
| Msa0158900 | Msa0620510 | 0.809730 | 1.637791e-50 | -8.615850e-47 |
| Msa0158900 | Msa0621710 | 0.807594 | 4.683757e-50 | -8.615850e-47 |
| Msa0158900 | Msa0622920 | 0.825375 | 4.851412e-54 | -8.615850e-47 |
| Msa0158900 | Msa0625620 | 0.831632 | 1.495423e-55 | -8.615850e-47 |
| Msa0158900 | Msa0640800 | 0.850427 | 1.710362e-60 | -8.615850e-47 |
| Msa0158900 | Msa0645340 | 0.829238 | 5.756051e-55 | -8.615850e-47 |
| Msa0158900 | Msa0647050 | 0.823290 | 1.499915e-53 | -8.615850e-47 |
| Msa0158900 | Msa0647440 | 0.844352 | 7.974489e-59 | -8.615850e-47 |
| Msa0158900 | Msa0648040 | 0.842061 | 3.253187e-58 | -8.615850e-47 |
| Msa0158900 | Msa0648760 | 0.873094 | 1.917991e-67 | -8.615850e-47 |
| Msa0158900 | Msa0653160 | 0.813771 | 2.162083e-51 | -8.615850e-47 |
| Msa0158900 | Msa0654740 | 0.828607 | 8.184752e-55 | -8.615850e-47 |
| Msa0158900 | Msa0657210 | 0.847138 | 1.397615e-59 | -8.615850e-47 |
| Msa0158900 | Msa0659150 | 0.808033 | 3.777625e-50 | -8.615850e-47 |
| Msa0158900 | Msa0659200 | 0.811363 | 7.266773e-51 | -8.615850e-47 |
| Msa0158900 | Msa0663290 | 0.851498 | 8.534386e-61 | -8.615850e-47 |
| Msa0158900 | Msa0664070 | 0.851643 | 7.762482e-61 | -8.615850e-47 |
| Msa0158900 | Msa0668900 | 0.827124 | 1.859994e-54 | -8.615850e-47 |
| Msa0158900 | Msa0675350 | 0.801692 | 7.987766e-49 | -8.615850e-47 |
| Msa0158900 | Msa0687090 | 0.828649 | 7.995577e-55 | -8.615850e-47 |
| Msa0158900 | Msa0688380 | 0.812629 | 3.850117e-51 | -8.615850e-47 |
| Msa0158900 | Msa0688620 | 0.830312 | 3.152650e-55 | -8.615850e-47 |
| Msa0158900 | Msa0690320 | 0.849911 | 2.386048e-60 | -8.615850e-47 |
| Msa0158900 | Msa0690740 | 0.852913 | 3.379517e-61 | -8.615850e-47 |
| Msa0158900 | Msa0691270 | 0.854143 | 1.498181e-61 | -8.615850e-47 |
| Msa0158900 | Msa0701250 | 0.858601 | 7.367337e-63 | -8.615850e-47 |
| Msa0158900 | Msa0707260 | 0.846582 | 1.984284e-59 | -8.615850e-47 |
| Msa0158900 | Msa0713920 | 0.815669 | 8.212180e-52 | -8.615850e-47 |
| Msa0158900 | Msa0714520 | 0.833428 | 5.362414e-56 | -8.615850e-47 |
| Msa0158900 | Msa0717830 | 0.807292 | 5.428069e-50 | -8.615850e-47 |
| Msa0158900 | Msa0717900 | 0.855898 | 4.632067e-62 | -8.615850e-47 |
| Msa0158900 | Msa0720280 | 0.846854 | 1.671434e-59 | -8.615850e-47 |
| Msa0158900 | Msa0737130 | 0.822874 | 1.875664e-53 | -8.615850e-47 |
| Msa0158900 | Msa0737140 | 0.808617 | 2.836484e-50 | -8.615850e-47 |
| Msa0158900 | Msa0743440 | 0.829315 | 5.513175e-55 | -8.615850e-47 |
| Msa0158900 | Msa0745720 | 0.801003 | 1.105027e-48 | -8.615850e-47 |
| Msa0158900 | Msa0747740 | 0.818769 | 1.648977e-52 | -8.615850e-47 |
| Msa0158900 | Msa0749190 | 0.825162 | 5.448748e-54 | -8.615850e-47 |
| Msa0158900 | Msa0750520 | 0.827804 | 1.277851e-54 | -8.615850e-47 |
| Msa0158900 | Msa0758590 | 0.816707 | 4.814279e-52 | -8.615850e-47 |
| Msa0158900 | Msa0778600 | 0.844179 | 8.876483e-59 | -8.615850e-47 |
| Msa0158900 | Msa0780910 | 0.814197 | 1.741604e-51 | -8.615850e-47 |
| Msa0158900 | Msa0800660 | 0.875669 | 2.568037e-68 | -8.615850e-47 |
| Msa0158900 | Msa0803140 | 0.851543 | 8.289305e-61 | -8.615850e-47 |
| Msa0158900 | Msa0816080 | 0.846467 | 2.132232e-59 | -8.615850e-47 |
| Msa0158900 | Msa0816230 | 0.805284 | 1.438149e-49 | -8.615850e-47 |
| Msa0158900 | Msa0821160 | 0.821130 | 4.755568e-53 | -8.615850e-47 |
| Msa0158900 | Msa0837680 | 0.832935 | 7.114768e-56 | -8.615850e-47 |
| Msa0158900 | Msa0841500 | 0.846052 | 2.766081e-59 | -8.615850e-47 |
| Msa0158900 | Msa0851300 | 0.835153 | 1.980912e-56 | -8.615850e-47 |
| Msa0158900 | Msa0861440 | 0.823773 | 1.156241e-53 | -8.615850e-47 |
| Msa0158900 | Msa0863620 | 0.806097 | 9.704696e-50 | -8.615850e-47 |
| Msa0158900 | Msa0866530 | 0.818533 | 1.865794e-52 | -8.615850e-47 |
| Msa0158900 | Msa0867110 | 0.800750 | 1.245097e-48 | -8.615850e-47 |
| Msa0158900 | Msa0879920 | 0.823826 | 1.123431e-53 | -8.615850e-47 |
| Msa0158900 | Msa0900090 | 0.855547 | 5.862375e-62 | -8.615850e-47 |
| Msa0158900 | Msa0900760 | 0.801040 | 1.086327e-48 | -8.615850e-47 |
| Msa0158900 | Msa0909760 | 0.830556 | 2.747517e-55 | -8.615850e-47 |
| Msa0158900 | Msa0926310 | 0.848826 | 4.786512e-60 | -8.615850e-47 |
| Msa0158900 | Msa0930040 | 0.814819 | 1.268611e-51 | -8.615850e-47 |
| Msa0158900 | Msa0931310 | 0.801596 | 8.358757e-49 | -8.615850e-47 |
| Msa0158900 | Msa0931590 | 0.807425 | 5.086173e-50 | -8.615850e-47 |
| Msa0158900 | Msa0965470 | 0.829565 | 4.793344e-55 | -8.615850e-47 |
| Msa0158900 | Msa0989370 | 0.808786 | 2.609966e-50 | -8.615850e-47 |
| Msa0158900 | Msa1000780 | 0.855525 | 5.951810e-62 | -8.615850e-47 |
| Msa0158900 | Msa1008670 | 0.856936 | 2.295578e-62 | -8.615850e-47 |
| Msa0158900 | Msa1008680 | 0.814892 | 1.222103e-51 | -8.615850e-47 |
| Msa0158900 | Msa1033920 | 0.812412 | 4.296255e-51 | -8.615850e-47 |
| Msa0158900 | Msa1054740 | 0.815517 | 8.879365e-52 | -8.615850e-47 |
| Msa0158900 | Msa1060900 | 0.831967 | 1.235888e-55 | -8.615850e-47 |
| Msa0158900 | Msa1071410 | 0.829747 | 4.329702e-55 | -8.615850e-47 |
| Msa0158900 | Msa1074150 | 0.800248 | 1.575835e-48 | -8.615850e-47 |
| Msa0158900 | Msa1076020 | 0.826509 | 2.608572e-54 | -8.615850e-47 |
| Msa0158900 | Msa1078860 | 0.821199 | 4.583224e-53 | -8.615850e-47 |
| Msa0158900 | Msa1078990 | 0.832535 | 8.944427e-56 | -8.615850e-47 |
| Msa0158900 | Msa1079640 | 0.815198 | 1.045513e-51 | -8.615850e-47 |
| Msa0158900 | Msa1082380 | 0.839147 | 1.885958e-57 | -8.615850e-47 |
| Msa0158900 | Msa1104220 | 0.805996 | 1.019318e-49 | -8.615850e-47 |
| Msa0158900 | Msa1106220 | 0.866868 | 2.080355e-65 | -8.615850e-47 |
| Msa0158900 | Msa1114630 | 0.820048 | 8.425352e-53 | -8.615850e-47 |
| Msa0158900 | Msa1119380 | 0.840551 | 8.122606e-58 | -8.615850e-47 |
| Msa0158900 | Msa1124470 | 0.818861 | 1.571421e-52 | -8.615850e-47 |
| Msa0158900 | Msa1127280 | 0.831357 | 1.748081e-55 | -8.615850e-47 |
| Msa0158900 | Msa1139050 | 0.808113 | 3.631913e-50 | -8.615850e-47 |
| Msa0158900 | Msa1144990 | 0.805115 | 1.559605e-49 | -8.615850e-47 |
| Msa0158900 | Msa1148630 | 0.826212 | 3.070100e-54 | -8.615850e-47 |
| Msa0158900 | Msa1149450 | 0.852542 | 4.310574e-61 | -8.615850e-47 |
| Msa0158900 | Msa1159590 | 0.838192 | 3.327602e-57 | -8.615850e-47 |
| Msa0158900 | Msa1162880 | 0.837172 | 6.079314e-57 | -8.615850e-47 |
| Msa0158900 | Msa1163180 | 0.840986 | 6.246564e-58 | -8.615850e-47 |
| Msa0158900 | Msa1165480 | 0.840536 | 8.197918e-58 | -8.615850e-47 |
| Msa0158900 | Msa1166820 | 0.844784 | 6.099166e-59 | -8.615850e-47 |
| Msa0158900 | Msa1169170 | 0.826113 | 3.241019e-54 | -8.615850e-47 |
| Msa0158900 | Msa1169690 | 0.821614 | 3.676522e-53 | -8.615850e-47 |
| Msa0158900 | Msa1180700 | 0.831670 | 1.463472e-55 | -8.615850e-47 |
| Msa0158900 | Msa1183910 | 0.808009 | 3.823385e-50 | -8.615850e-47 |
| Msa0158900 | Msa1188790 | 0.837332 | 5.532116e-57 | -8.615850e-47 |
| Msa0158900 | Msa1190390 | 0.836793 | 7.599228e-57 | -8.615850e-47 |
| Msa0158900 | Msa1191000 | 0.846870 | 1.654678e-59 | -8.615850e-47 |
| Msa0158900 | Msa1201780 | 0.816997 | 4.143163e-52 | -8.615850e-47 |
| Msa0158900 | Msa1206040 | 0.805752 | 1.146896e-49 | -8.615850e-47 |
| Msa0158900 | Msa1213830 | 0.835866 | 1.307300e-56 | -8.615850e-47 |
| Msa0158900 | Msa1214350 | 0.832101 | 1.145336e-55 | -8.615850e-47 |
| Msa0158900 | Msa1215980 | 0.843495 | 1.352848e-58 | -8.615850e-47 |
| Msa0158900 | Msa1215990 | 0.812882 | 3.389559e-51 | -8.615850e-47 |
| Msa0158900 | Msa1223390 | 0.812548 | 4.012022e-51 | -8.615850e-47 |
| Msa0158900 | Msa1231780 | 0.844415 | 7.666668e-59 | -8.615850e-47 |
| Msa0158900 | Msa1242960 | 0.808013 | 3.815978e-50 | -8.615850e-47 |
| Msa0158900 | Msa1252790 | 0.800217 | 1.598225e-48 | -8.615850e-47 |
| Msa0158900 | Msa1254420 | 0.864704 | 1.004199e-64 | -8.615850e-47 |
| Msa0158900 | Msa1254540 | 0.860257 | 2.343733e-63 | -8.615850e-47 |
| Msa0158900 | Msa1261050 | 0.817606 | 3.023041e-52 | -8.615850e-47 |
| Msa0158900 | Msa1263740 | 0.840540 | 8.178095e-58 | -8.615850e-47 |
| Msa0158900 | Msa1263780 | 0.828551 | 8.444786e-55 | -8.615850e-47 |
| Msa0158900 | Msa1266690 | 0.813856 | 2.071355e-51 | -8.615850e-47 |
| Msa0158900 | Msa1267930 | 0.858015 | 1.100446e-62 | -8.615850e-47 |
| Msa0158900 | Msa1268540 | 0.812127 | 4.956133e-51 | -8.615850e-47 |
| Msa0158900 | Msa1294280 | 0.814522 | 1.476149e-51 | -8.615850e-47 |
| Msa0158900 | Msa1294460 | 0.855785 | 4.997016e-62 | -8.615850e-47 |
| Msa0158900 | Msa1294790 | 0.860437 | 2.066732e-63 | -8.615850e-47 |
| Msa0158900 | Msa1297070 | 0.820467 | 6.753931e-53 | -8.615850e-47 |
| Msa0158900 | Msa1300460 | 0.833495 | 5.160588e-56 | -8.615850e-47 |
| Msa0158900 | Msa1305780 | 0.822215 | 2.668978e-53 | -8.615850e-47 |
| Msa0158900 | Msa1305920 | 0.838597 | 2.615862e-57 | -8.615850e-47 |
| Msa0158900 | Msa1306570 | 0.810256 | 1.261778e-50 | -8.615850e-47 |
| Msa0158900 | Msa1308850 | 0.805824 | 1.107763e-49 | -8.615850e-47 |
| Msa0158900 | Msa1321530 | 0.803890 | 2.808375e-49 | -8.615850e-47 |
| Msa0158900 | Msa1328870 | 0.808563 | 2.912532e-50 | -8.615850e-47 |
| Msa0158900 | Msa1332950 | 0.851484 | 8.611717e-61 | -8.615850e-47 |
| Msa0158900 | Msa1333360 | 0.813742 | 2.194301e-51 | -8.615850e-47 |
| Msa0158900 | Msa1339170 | 0.836690 | 8.070394e-57 | -8.615850e-47 |
| Msa0158900 | Msa1339230 | 0.833847 | 4.214288e-56 | -8.615850e-47 |
| Msa0158900 | Msa1342810 | 0.845122 | 4.946101e-59 | -8.615850e-47 |
| Msa0158900 | Msa1361930 | 0.846753 | 1.781514e-59 | -8.615850e-47 |
| Msa0158900 | Msa1364680 | 0.813653 | 2.295330e-51 | -8.615850e-47 |
| Msa0158900 | Msa1367180 | 0.800435 | 1.443061e-48 | -8.615850e-47 |
| Msa0158900 | Msa1368750 | 0.802237 | 6.170467e-49 | -8.615850e-47 |
| Msa0158900 | Msa1374790 | 0.804252 | 2.361516e-49 | -8.615850e-47 |
| Msa0158900 | Msa1375350 | 0.809655 | 1.699952e-50 | -8.615850e-47 |
| Msa0158900 | Msa1381470 | 0.841198 | 5.494831e-58 | -8.615850e-47 |
| Msa0158900 | Msa1381800 | 0.828060 | 1.108687e-54 | -8.615850e-47 |
| Msa0158900 | Msa1387500 | 0.854414 | 1.250677e-61 | -8.615850e-47 |
| Msa0158900 | Msa1389820 | 0.826830 | 2.187049e-54 | -8.615850e-47 |
| Msa0158900 | Msa1390210 | 0.845584 | 3.707387e-59 | -8.615850e-47 |
| Msa0158900 | Msa1393560 | 0.868925 | 4.542870e-66 | -8.615850e-47 |
| Msa0158900 | Msa1399190 | 0.852346 | 4.904780e-61 | -8.615850e-47 |
| Msa0158900 | Msa1406720 | 0.868250 | 7.509485e-66 | -8.615850e-47 |
| Msa0158900 | Msa1410190 | 0.818230 | 2.184892e-52 | -8.615850e-47 |
| Msa0158900 | Msa1417060 | 0.802944 | 4.410997e-49 | -8.615850e-47 |
| Msa0158900 | Msa1424370 | 0.823336 | 1.463109e-53 | -8.615850e-47 |
| Msa0158900 | Msa1424590 | 0.804512 | 2.084652e-49 | -8.615850e-47 |
| Msa0158900 | Msa1426320 | 0.845035 | 5.218102e-59 | -8.615850e-47 |
| Msa0158900 | Msa1428000 | 0.833352 | 5.604044e-56 | -8.615850e-47 |
| Msa0158900 | Msa1432060 | 0.847837 | 8.978922e-60 | -8.615850e-47 |
| Msa0158900 | Msa1434640 | 0.817469 | 3.244636e-52 | -8.615850e-47 |
| Msa0158900 | Msa1435100 | 0.848766 | 4.972027e-60 | -8.615850e-47 |
| Msa0158900 | Msa1439730 | 0.856290 | 3.556576e-62 | -8.615850e-47 |
| Msa0158900 | Msa1442260 | 0.831794 | 1.364240e-55 | -8.615850e-47 |
| Msa0158900 | Msa1447170 | 0.823571 | 1.289494e-53 | -8.615850e-47 |
| Msa0158900 | Msa1450190 | 0.807981 | 3.876262e-50 | -8.615850e-47 |
| Msa0158900 | Msa1451820 | 0.801196 | 1.009285e-48 | -8.615850e-47 |
| Msa0158900 | Msa1457840 | 0.839935 | 1.176306e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0158900 | MtrunA17_Chr1g0171221 | 99.697 | 330 | 1 | 0 | 1 | 330 | 1 | 330 | 0.0 | 679 |
| Msa0158900 | MtrunA17_Chr7g0225281 | 97.576 | 330 | 8 | 0 | 1 | 330 | 1 | 330 | 0.0 | 672 |
| Msa0158900 | MtrunA17_Chr7g0225401 | 97.576 | 330 | 8 | 0 | 1 | 330 | 1 | 330 | 0.0 | 672 |
| Msa0158900 | MtrunA17_Chr8g0362581 | 92.727 | 330 | 19 | 1 | 1 | 330 | 1 | 325 | 0.0 | 635 |
| Msa0158900 | MtrunA17_Chr4g0065771 | 76.615 | 325 | 75 | 1 | 6 | 330 | 18 | 341 | 0.0 | 534 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0158900 | AT3G27060.1 | 83.735 | 332 | 52 | 2 | 1 | 330 | 1 | 332 | 0.0 | 558 |
| Msa0158900 | AT3G23580.1 | 76.308 | 325 | 76 | 1 | 6 | 330 | 18 | 341 | 0.0 | 518 |
Find 60 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAGAATCGGTCTGGGTTT+GGG | 0.237047 | 1_4:-28859850 | None:intergenic |
| TGCGCATTGGTTGGGATGAA+TGG | 0.293239 | 1_4:+28860553 | Msa0158900:CDS |
| GATGGAATTGATTTCGCTTC+AGG | 0.300115 | 1_4:+28860672 | Msa0158900:CDS |
| CGCTTCCTTGCGCATTGGTT+GGG | 0.302060 | 1_4:+28860545 | Msa0158900:CDS |
| GTTTGTTGCTGATAGGTTAT+TGG | 0.303774 | 1_4:+28860600 | Msa0158900:CDS |
| TGCAATCTGGAAACCATAAA+AGG | 0.328563 | 1_4:-28860107 | None:intergenic |
| GGGGCAAGAAGGGGTTCTTC+TGG | 0.330658 | 1_4:-28859830 | None:intergenic |
| ATGCAGAATCGGTCTGGGTT+TGG | 0.338926 | 1_4:-28859851 | None:intergenic |
| GCGCATTGGTTGGGATGAAT+GGG | 0.350139 | 1_4:+28860554 | Msa0158900:CDS |
| AAGCTGATTGGGCGATGAAA+TGG | 0.358474 | 1_4:+28860245 | Msa0158900:CDS |
| ACCATAAAAGGCACGTGCTT+CGG | 0.379129 | 1_4:-28860095 | None:intergenic |
| TTTGTTGCTGATAGGTTATT+GGG | 0.379609 | 1_4:+28860601 | Msa0158900:CDS |
| ATGTTCAGAATCCGTTTGAT+TGG | 0.390491 | 1_4:+28860650 | Msa0158900:CDS |
| AATCACTTATATACGTTTCA+AGG | 0.405711 | 1_4:-28860165 | None:intergenic |
| GTCTGGGTTTGGGGCAAGAA+GGG | 0.415976 | 1_4:-28859840 | None:intergenic |
| GGGAACATGCAGAATCGGTC+TGG | 0.418807 | 1_4:-28859857 | None:intergenic |
| GCGCTTCCTTGCGCATTGGT+TGG | 0.429604 | 1_4:+28860544 | Msa0158900:CDS |
| GTTGCATTTGCTTGTGTTGA+AGG | 0.436600 | 1_4:+28860301 | Msa0158900:CDS |
| AGGCACGTGCTTCGGAGACT+TGG | 0.437951 | 1_4:-28860087 | None:intergenic |
| GAGCTTATTTCACGCGATGA+AGG | 0.439919 | 1_4:+28860403 | Msa0158900:CDS |
| TCTGTTATGAATAGCTTGAA+TGG | 0.443380 | 1_4:+28860742 | Msa0158900:CDS |
| TCAGAATCCGTTTGATTGGA+TGG | 0.443597 | 1_4:+28860654 | Msa0158900:CDS |
| TCTGGGTTTGGGGCAAGAAG+GGG | 0.444554 | 1_4:-28859839 | None:intergenic |
| GCCGTCGGAGGCGGCGAAGA+AGG | 0.452615 | 1_4:-28860023 | None:intergenic |
| TGCGGTCCAGAATGAGGCTT+CGG | 0.467026 | 1_4:-28859918 | None:intergenic |
| GAAAATCGCACAGAAACTTC+CGG | 0.473049 | 1_4:-28860335 | None:intergenic |
| GAGGACGATGCCGTCGGAGG+CGG | 0.474359 | 1_4:-28860032 | None:intergenic |
| ATCAATTCCATCCAATCAAA+CGG | 0.480364 | 1_4:-28860661 | None:intergenic |
| CGACGCGCTTCCTTGCGCAT+TGG | 0.483293 | 1_4:+28860540 | Msa0158900:CDS |
| GATAGGTTATTGGGTGAGCT+TGG | 0.486660 | 1_4:+28860610 | Msa0158900:CDS |
| TGAAATAAGCTCGTTTGAGA+AGG | 0.487505 | 1_4:-28860392 | None:intergenic |
| GGAACATGCAGAATCGGTCT+GGG | 0.489835 | 1_4:-28859856 | None:intergenic |
| CGCATTGGTTGGGATGAATG+GGG | 0.491773 | 1_4:+28860555 | Msa0158900:CDS |
| ATATTGAGTTTGTTGCTGAT+AGG | 0.493329 | 1_4:+28860593 | Msa0158900:CDS |
| ATGGAATTGATTTCGCTTCA+GGG | 0.495575 | 1_4:+28860673 | Msa0158900:CDS |
| GTGATGCTGTTGAAATTGAA+AGG | 0.499878 | 1_4:+28860506 | Msa0158900:CDS |
| AGGGGTTCTTCTGGAAAAGC+AGG | 0.505225 | 1_4:-28859821 | None:intergenic |
| GGGTGAGCTTGGTTGTGAAA+AGG | 0.505349 | 1_4:+28860621 | Msa0158900:CDS |
| GCCTTCTTCGCCGCCTCCGA+CGG | 0.505987 | 1_4:+28860022 | Msa0158900:CDS |
| GGTCTGGGTTTGGGGCAAGA+AGG | 0.509820 | 1_4:-28859841 | None:intergenic |
| TTCTTCTGCGGTCCAGAATG+AGG | 0.510696 | 1_4:-28859924 | None:intergenic |
| GGATTGGGAACATGCAGAAT+CGG | 0.521690 | 1_4:-28859862 | None:intergenic |
| GCAGAATCGGTCTGGGTTTG+GGG | 0.524980 | 1_4:-28859849 | None:intergenic |
| TGATGCTGTTGAAATTGAAA+GGG | 0.545948 | 1_4:+28860507 | Msa0158900:CDS |
| ATGAATAGCTTGAATGGTAA+TGG | 0.546534 | 1_4:+28860748 | Msa0158900:CDS |
| TTTCCTCCGATCTCAAGCAC+TGG | 0.566756 | 1_4:+28859954 | Msa0158900:CDS |
| TTCGAGGACGATGCCGTCGG+AGG | 0.583990 | 1_4:-28860035 | None:intergenic |
| CGAGGACGTGAGAGATGAAG+TGG | 0.584744 | 1_4:-28860000 | None:intergenic |
| TCGTTTGAGAAGGTTAATCC+CGG | 0.587906 | 1_4:-28860382 | None:intergenic |
| ATCGTCCTCGAAAATCTCGC+TGG | 0.589537 | 1_4:+28860046 | Msa0158900:CDS |
| CGGAGGCGGCGAAGAAGGCG+AGG | 0.590500 | 1_4:-28860018 | None:intergenic |
| TGGAATTGATTTCGCTTCAG+GGG | 0.591747 | 1_4:+28860674 | Msa0158900:CDS |
| GCATTGGTTGGGATGAATGG+GGG | 0.596821 | 1_4:+28860556 | Msa0158900:CDS |
| TTCATCCCAACCAATGCGCA+AGG | 0.604485 | 1_4:-28860550 | None:intergenic |
| TTGCCAGTGCTTGAGATCGG+AGG | 0.610798 | 1_4:-28859957 | None:intergenic |
| GCTAAGTTCAGAGCGCGTGA+AGG | 0.615081 | 1_4:+28860474 | Msa0158900:CDS |
| CACTGGCAAAACCTCACTGA+CGG | 0.643079 | 1_4:+28859971 | Msa0158900:CDS |
| AGTGGCGTTCGCCGTCAGTG+AGG | 0.654051 | 1_4:-28859982 | None:intergenic |
| GGAAAGATCGACTTCTTCTG+CGG | 0.673797 | 1_4:-28859936 | None:intergenic |
| GAAGAGAATACATCTCAGAG+TGG | 0.694344 | 1_4:-28860141 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AATCACTTATATACGTTTCA+AGG | - | chr1_4:28860168-28860187 | None:intergenic | 25.0% |
| ! | AATCACTTATATACGTTTCA+AGG | - | chr1_4:28860168-28860187 | None:intergenic | 25.0% |
| !!! | AGATTTTTGGGTATTGGATT+GGG | - | chr1_4:28859880-28859899 | None:intergenic | 30.0% |
| AATCCAATACCCAAAAATCT+GGG | + | chr1_4:28859880-28859899 | Msa0158900:CDS | 30.0% | |
| ! | TGTACATTTCCCAGATTTTT+GGG | - | chr1_4:28859892-28859911 | None:intergenic | 30.0% |
| ! | TTGTACATTTCCCAGATTTT+TGG | - | chr1_4:28859893-28859912 | None:intergenic | 30.0% |
| !!! | ATTTTCTGGTTGAAAAAACG+TGG | + | chr1_4:28860352-28860371 | Msa0158900:CDS | 30.0% |
| TGATGCTGTTGAAATTGAAA+GGG | + | chr1_4:28860507-28860526 | Msa0158900:CDS | 30.0% | |
| !! | ATATTGAGTTTGTTGCTGAT+AGG | + | chr1_4:28860593-28860612 | Msa0158900:CDS | 30.0% |
| TTTGTTGCTGATAGGTTATT+GGG | + | chr1_4:28860601-28860620 | Msa0158900:CDS | 30.0% | |
| ATCAATTCCATCCAATCAAA+CGG | - | chr1_4:28860664-28860683 | None:intergenic | 30.0% | |
| AACACGCTTCTCAAAAAAAT+TGG | - | chr1_4:28860704-28860723 | None:intergenic | 30.0% | |
| !!! | AATTTTTTTGAGAAGCGTGT+TGG | + | chr1_4:28860703-28860722 | Msa0158900:CDS | 30.0% |
| !!! | ATTTTTTTGAGAAGCGTGTT+GGG | + | chr1_4:28860704-28860723 | Msa0158900:CDS | 30.0% |
| TCTGTTATGAATAGCTTGAA+TGG | + | chr1_4:28860742-28860761 | Msa0158900:CDS | 30.0% | |
| ATGAATAGCTTGAATGGTAA+TGG | + | chr1_4:28860748-28860767 | Msa0158900:CDS | 30.0% | |
| !!! | AGATTTTTGGGTATTGGATT+GGG | - | chr1_4:28859880-28859899 | None:intergenic | 30.0% |
| AATCCAATACCCAAAAATCT+GGG | + | chr1_4:28859880-28859899 | Msa0158900:CDS | 30.0% | |
| ! | TGTACATTTCCCAGATTTTT+GGG | - | chr1_4:28859892-28859911 | None:intergenic | 30.0% |
| ! | TTGTACATTTCCCAGATTTT+TGG | - | chr1_4:28859893-28859912 | None:intergenic | 30.0% |
| !!! | ATTTTCTGGTTGAAAAAACG+TGG | + | chr1_4:28860352-28860371 | Msa0158900:CDS | 30.0% |
| TGATGCTGTTGAAATTGAAA+GGG | + | chr1_4:28860507-28860526 | Msa0158900:CDS | 30.0% | |
| !! | ATATTGAGTTTGTTGCTGAT+AGG | + | chr1_4:28860593-28860612 | Msa0158900:CDS | 30.0% |
| TTTGTTGCTGATAGGTTATT+GGG | + | chr1_4:28860601-28860620 | Msa0158900:CDS | 30.0% | |
| ATCAATTCCATCCAATCAAA+CGG | - | chr1_4:28860664-28860683 | None:intergenic | 30.0% | |
| AACACGCTTCTCAAAAAAAT+TGG | - | chr1_4:28860704-28860723 | None:intergenic | 30.0% | |
| !!! | AATTTTTTTGAGAAGCGTGT+TGG | + | chr1_4:28860703-28860722 | Msa0158900:CDS | 30.0% |
| !!! | ATTTTTTTGAGAAGCGTGTT+GGG | + | chr1_4:28860704-28860723 | Msa0158900:CDS | 30.0% |
| TCTGTTATGAATAGCTTGAA+TGG | + | chr1_4:28860742-28860761 | Msa0158900:CDS | 30.0% | |
| ATGAATAGCTTGAATGGTAA+TGG | + | chr1_4:28860748-28860767 | Msa0158900:CDS | 30.0% | |
| !!! | CAGATTTTTGGGTATTGGAT+TGG | - | chr1_4:28859881-28859900 | None:intergenic | 35.0% |
| CAATCCAATACCCAAAAATC+TGG | + | chr1_4:28859879-28859898 | Msa0158900:CDS | 35.0% | |
| !!! | TTTCCCAGATTTTTGGGTAT+TGG | - | chr1_4:28859886-28859905 | None:intergenic | 35.0% |
| TGCAATCTGGAAACCATAAA+AGG | - | chr1_4:28860110-28860129 | None:intergenic | 35.0% | |
| ! | GGATGTTTTCAATTGCAATC+TGG | - | chr1_4:28860123-28860142 | None:intergenic | 35.0% |
| TATCGCGAAAAAAGCTGATT+GGG | + | chr1_4:28860234-28860253 | Msa0158900:CDS | 35.0% | |
| ! | GTTGAAGGAATCTTTTTCTC+CGG | + | chr1_4:28860316-28860335 | Msa0158900:CDS | 35.0% |
| GAAAAAACGTGGTTTAATGC+CGG | + | chr1_4:28860363-28860382 | Msa0158900:CDS | 35.0% | |
| AAAAAACGTGGTTTAATGCC+GGG | + | chr1_4:28860364-28860383 | Msa0158900:CDS | 35.0% | |
| TGAAATAAGCTCGTTTGAGA+AGG | - | chr1_4:28860395-28860414 | None:intergenic | 35.0% | |
| GTGATGCTGTTGAAATTGAA+AGG | + | chr1_4:28860506-28860525 | Msa0158900:CDS | 35.0% | |
| ! | GTTTGTTGCTGATAGGTTAT+TGG | + | chr1_4:28860600-28860619 | Msa0158900:CDS | 35.0% |
| ATGTTCAGAATCCGTTTGAT+TGG | + | chr1_4:28860650-28860669 | Msa0158900:CDS | 35.0% | |
| ! | ATGGAATTGATTTCGCTTCA+GGG | + | chr1_4:28860673-28860692 | Msa0158900:CDS | 35.0% |
| !!! | TTTTTTTGAGAAGCGTGTTG+GGG | + | chr1_4:28860705-28860724 | Msa0158900:CDS | 35.0% |
| !!! | TGCTGATTTTTGCTTCAAGT+TGG | + | chr1_4:28860774-28860793 | Msa0158900:CDS | 35.0% |
| !!! | CAGATTTTTGGGTATTGGAT+TGG | - | chr1_4:28859881-28859900 | None:intergenic | 35.0% |
| CAATCCAATACCCAAAAATC+TGG | + | chr1_4:28859879-28859898 | Msa0158900:CDS | 35.0% | |
| !!! | TTTCCCAGATTTTTGGGTAT+TGG | - | chr1_4:28859886-28859905 | None:intergenic | 35.0% |
| TGCAATCTGGAAACCATAAA+AGG | - | chr1_4:28860110-28860129 | None:intergenic | 35.0% | |
| ! | GGATGTTTTCAATTGCAATC+TGG | - | chr1_4:28860123-28860142 | None:intergenic | 35.0% |
| TATCGCGAAAAAAGCTGATT+GGG | + | chr1_4:28860234-28860253 | Msa0158900:CDS | 35.0% | |
| ! | GTTGAAGGAATCTTTTTCTC+CGG | + | chr1_4:28860316-28860335 | Msa0158900:CDS | 35.0% |
| GAAAAAACGTGGTTTAATGC+CGG | + | chr1_4:28860363-28860382 | Msa0158900:CDS | 35.0% | |
| AAAAAACGTGGTTTAATGCC+GGG | + | chr1_4:28860364-28860383 | Msa0158900:CDS | 35.0% | |
| TGAAATAAGCTCGTTTGAGA+AGG | - | chr1_4:28860395-28860414 | None:intergenic | 35.0% | |
| GTGATGCTGTTGAAATTGAA+AGG | + | chr1_4:28860506-28860525 | Msa0158900:CDS | 35.0% | |
| ! | GTTTGTTGCTGATAGGTTAT+TGG | + | chr1_4:28860600-28860619 | Msa0158900:CDS | 35.0% |
| ATGTTCAGAATCCGTTTGAT+TGG | + | chr1_4:28860650-28860669 | Msa0158900:CDS | 35.0% | |
| ! | ATGGAATTGATTTCGCTTCA+GGG | + | chr1_4:28860673-28860692 | Msa0158900:CDS | 35.0% |
| !!! | TTTTTTTGAGAAGCGTGTTG+GGG | + | chr1_4:28860705-28860724 | Msa0158900:CDS | 35.0% |
| !!! | TGCTGATTTTTGCTTCAAGT+TGG | + | chr1_4:28860774-28860793 | Msa0158900:CDS | 35.0% |
| GAAGAGAATACATCTCAGAG+TGG | - | chr1_4:28860144-28860163 | None:intergenic | 40.0% | |
| !!! | TCAGCTTTTTTCGCGATACA+TGG | - | chr1_4:28860232-28860251 | None:intergenic | 40.0% |
| GTATCGCGAAAAAAGCTGAT+TGG | + | chr1_4:28860233-28860252 | Msa0158900:CDS | 40.0% | |
| GTTGCATTTGCTTGTGTTGA+AGG | + | chr1_4:28860301-28860320 | Msa0158900:CDS | 40.0% | |
| GAAAATCGCACAGAAACTTC+CGG | - | chr1_4:28860338-28860357 | None:intergenic | 40.0% | |
| ! | GAAGTTTCTGTGCGATTTTC+TGG | + | chr1_4:28860338-28860357 | Msa0158900:CDS | 40.0% |
| TCGTTTGAGAAGGTTAATCC+CGG | - | chr1_4:28860385-28860404 | None:intergenic | 40.0% | |
| TCAGAATCCGTTTGATTGGA+TGG | + | chr1_4:28860654-28860673 | Msa0158900:CDS | 40.0% | |
| ! | GATGGAATTGATTTCGCTTC+AGG | + | chr1_4:28860672-28860691 | Msa0158900:CDS | 40.0% |
| ! | TGGAATTGATTTCGCTTCAG+GGG | + | chr1_4:28860674-28860693 | Msa0158900:CDS | 40.0% |
| GAAGAGAATACATCTCAGAG+TGG | - | chr1_4:28860144-28860163 | None:intergenic | 40.0% | |
| !!! | TCAGCTTTTTTCGCGATACA+TGG | - | chr1_4:28860232-28860251 | None:intergenic | 40.0% |
| GTATCGCGAAAAAAGCTGAT+TGG | + | chr1_4:28860233-28860252 | Msa0158900:CDS | 40.0% | |
| GTTGCATTTGCTTGTGTTGA+AGG | + | chr1_4:28860301-28860320 | Msa0158900:CDS | 40.0% | |
| GAAAATCGCACAGAAACTTC+CGG | - | chr1_4:28860338-28860357 | None:intergenic | 40.0% | |
| ! | GAAGTTTCTGTGCGATTTTC+TGG | + | chr1_4:28860338-28860357 | Msa0158900:CDS | 40.0% |
| TCGTTTGAGAAGGTTAATCC+CGG | - | chr1_4:28860385-28860404 | None:intergenic | 40.0% | |
| TCAGAATCCGTTTGATTGGA+TGG | + | chr1_4:28860654-28860673 | Msa0158900:CDS | 40.0% | |
| ! | GATGGAATTGATTTCGCTTC+AGG | + | chr1_4:28860672-28860691 | Msa0158900:CDS | 40.0% |
| ! | TGGAATTGATTTCGCTTCAG+GGG | + | chr1_4:28860674-28860693 | Msa0158900:CDS | 40.0% |
| GGATTGGGAACATGCAGAAT+CGG | - | chr1_4:28859865-28859884 | None:intergenic | 45.0% | |
| AAAAAGCCGAAGCCTCATTC+TGG | + | chr1_4:28859912-28859931 | Msa0158900:CDS | 45.0% | |
| ! | GGAAAGATCGACTTCTTCTG+CGG | - | chr1_4:28859939-28859958 | None:intergenic | 45.0% |
| ! | GTTTTGCCAGTGCTTGAGAT+CGG | - | chr1_4:28859963-28859982 | None:intergenic | 45.0% |
| ! | ATCTACCAGCGAGATTTTCG+AGG | - | chr1_4:28860054-28860073 | None:intergenic | 45.0% |
| ! | ACCATAAAAGGCACGTGCTT+CGG | - | chr1_4:28860098-28860117 | None:intergenic | 45.0% |
| AAGCTGATTGGGCGATGAAA+TGG | + | chr1_4:28860245-28860264 | Msa0158900:CDS | 45.0% | |
| GAGCTTATTTCACGCGATGA+AGG | + | chr1_4:28860403-28860422 | Msa0158900:CDS | 45.0% | |
| GATAGGTTATTGGGTGAGCT+TGG | + | chr1_4:28860610-28860629 | Msa0158900:CDS | 45.0% | |
| GGATTGGGAACATGCAGAAT+CGG | - | chr1_4:28859865-28859884 | None:intergenic | 45.0% | |
| AAAAAGCCGAAGCCTCATTC+TGG | + | chr1_4:28859912-28859931 | Msa0158900:CDS | 45.0% | |
| ! | GGAAAGATCGACTTCTTCTG+CGG | - | chr1_4:28859939-28859958 | None:intergenic | 45.0% |
| ! | GTTTTGCCAGTGCTTGAGAT+CGG | - | chr1_4:28859963-28859982 | None:intergenic | 45.0% |
| ! | ATCTACCAGCGAGATTTTCG+AGG | - | chr1_4:28860054-28860073 | None:intergenic | 45.0% |
| ! | ACCATAAAAGGCACGTGCTT+CGG | - | chr1_4:28860098-28860117 | None:intergenic | 45.0% |
| AAGCTGATTGGGCGATGAAA+TGG | + | chr1_4:28860245-28860264 | Msa0158900:CDS | 45.0% | |
| GAGCTTATTTCACGCGATGA+AGG | + | chr1_4:28860403-28860422 | Msa0158900:CDS | 45.0% | |
| GATAGGTTATTGGGTGAGCT+TGG | + | chr1_4:28860610-28860629 | Msa0158900:CDS | 45.0% | |
| ! | AGGGGTTCTTCTGGAAAAGC+AGG | - | chr1_4:28859824-28859843 | None:intergenic | 50.0% |
| TGCAGAATCGGTCTGGGTTT+GGG | - | chr1_4:28859853-28859872 | None:intergenic | 50.0% | |
| ATGCAGAATCGGTCTGGGTT+TGG | - | chr1_4:28859854-28859873 | None:intergenic | 50.0% | |
| GGAACATGCAGAATCGGTCT+GGG | - | chr1_4:28859859-28859878 | None:intergenic | 50.0% | |
| TTCTTCTGCGGTCCAGAATG+AGG | - | chr1_4:28859927-28859946 | None:intergenic | 50.0% | |
| TTTCCTCCGATCTCAAGCAC+TGG | + | chr1_4:28859954-28859973 | Msa0158900:CDS | 50.0% | |
| CACTGGCAAAACCTCACTGA+CGG | + | chr1_4:28859971-28859990 | Msa0158900:CDS | 50.0% | |
| !! | ATTTTCGAGGACGATGCCGT+CGG | - | chr1_4:28860041-28860060 | None:intergenic | 50.0% |
| ATCGTCCTCGAAAATCTCGC+TGG | + | chr1_4:28860046-28860065 | Msa0158900:CDS | 50.0% | |
| ! | TCCGAAGCACGTGCCTTTTA+TGG | + | chr1_4:28860094-28860113 | Msa0158900:CDS | 50.0% |
| TTCATCCCAACCAATGCGCA+AGG | - | chr1_4:28860553-28860572 | None:intergenic | 50.0% | |
| !! | TGCGCATTGGTTGGGATGAA+TGG | + | chr1_4:28860553-28860572 | Msa0158900:CDS | 50.0% |
| !! | GCGCATTGGTTGGGATGAAT+GGG | + | chr1_4:28860554-28860573 | Msa0158900:CDS | 50.0% |
| !! | CGCATTGGTTGGGATGAATG+GGG | + | chr1_4:28860555-28860574 | Msa0158900:CDS | 50.0% |
| !! | GCATTGGTTGGGATGAATGG+GGG | + | chr1_4:28860556-28860575 | Msa0158900:CDS | 50.0% |
| GGGTGAGCTTGGTTGTGAAA+AGG | + | chr1_4:28860621-28860640 | Msa0158900:CDS | 50.0% | |
| ! | AGGGGTTCTTCTGGAAAAGC+AGG | - | chr1_4:28859824-28859843 | None:intergenic | 50.0% |
| TGCAGAATCGGTCTGGGTTT+GGG | - | chr1_4:28859853-28859872 | None:intergenic | 50.0% | |
| ATGCAGAATCGGTCTGGGTT+TGG | - | chr1_4:28859854-28859873 | None:intergenic | 50.0% | |
| GGAACATGCAGAATCGGTCT+GGG | - | chr1_4:28859859-28859878 | None:intergenic | 50.0% | |
| TTCTTCTGCGGTCCAGAATG+AGG | - | chr1_4:28859927-28859946 | None:intergenic | 50.0% | |
| TTTCCTCCGATCTCAAGCAC+TGG | + | chr1_4:28859954-28859973 | Msa0158900:CDS | 50.0% | |
| CACTGGCAAAACCTCACTGA+CGG | + | chr1_4:28859971-28859990 | Msa0158900:CDS | 50.0% | |
| !! | ATTTTCGAGGACGATGCCGT+CGG | - | chr1_4:28860041-28860060 | None:intergenic | 50.0% |
| ATCGTCCTCGAAAATCTCGC+TGG | + | chr1_4:28860046-28860065 | Msa0158900:CDS | 50.0% | |
| ! | TCCGAAGCACGTGCCTTTTA+TGG | + | chr1_4:28860094-28860113 | Msa0158900:CDS | 50.0% |
| TTCATCCCAACCAATGCGCA+AGG | - | chr1_4:28860553-28860572 | None:intergenic | 50.0% | |
| !! | TGCGCATTGGTTGGGATGAA+TGG | + | chr1_4:28860553-28860572 | Msa0158900:CDS | 50.0% |
| !! | GCGCATTGGTTGGGATGAAT+GGG | + | chr1_4:28860554-28860573 | Msa0158900:CDS | 50.0% |
| !! | CGCATTGGTTGGGATGAATG+GGG | + | chr1_4:28860555-28860574 | Msa0158900:CDS | 50.0% |
| !! | GCATTGGTTGGGATGAATGG+GGG | + | chr1_4:28860556-28860575 | Msa0158900:CDS | 50.0% |
| GGGTGAGCTTGGTTGTGAAA+AGG | + | chr1_4:28860621-28860640 | Msa0158900:CDS | 50.0% | |
| ! | TCTGGGTTTGGGGCAAGAAG+GGG | - | chr1_4:28859842-28859861 | None:intergenic | 55.0% |
| ! | GTCTGGGTTTGGGGCAAGAA+GGG | - | chr1_4:28859843-28859862 | None:intergenic | 55.0% |
| GCAGAATCGGTCTGGGTTTG+GGG | - | chr1_4:28859852-28859871 | None:intergenic | 55.0% | |
| GGGAACATGCAGAATCGGTC+TGG | - | chr1_4:28859860-28859879 | None:intergenic | 55.0% | |
| TGCGGTCCAGAATGAGGCTT+CGG | - | chr1_4:28859921-28859940 | None:intergenic | 55.0% | |
| TTGCCAGTGCTTGAGATCGG+AGG | - | chr1_4:28859960-28859979 | None:intergenic | 55.0% | |
| CGAGGACGTGAGAGATGAAG+TGG | - | chr1_4:28860003-28860022 | None:intergenic | 55.0% | |
| GCTAAGTTCAGAGCGCGTGA+AGG | + | chr1_4:28860474-28860493 | Msa0158900:CDS | 55.0% | |
| !! | CGCTTCCTTGCGCATTGGTT+GGG | + | chr1_4:28860545-28860564 | Msa0158900:CDS | 55.0% |
| ! | TCTGGGTTTGGGGCAAGAAG+GGG | - | chr1_4:28859842-28859861 | None:intergenic | 55.0% |
| ! | GTCTGGGTTTGGGGCAAGAA+GGG | - | chr1_4:28859843-28859862 | None:intergenic | 55.0% |
| GCAGAATCGGTCTGGGTTTG+GGG | - | chr1_4:28859852-28859871 | None:intergenic | 55.0% | |
| GGGAACATGCAGAATCGGTC+TGG | - | chr1_4:28859860-28859879 | None:intergenic | 55.0% | |
| TGCGGTCCAGAATGAGGCTT+CGG | - | chr1_4:28859921-28859940 | None:intergenic | 55.0% | |
| TTGCCAGTGCTTGAGATCGG+AGG | - | chr1_4:28859960-28859979 | None:intergenic | 55.0% | |
| CGAGGACGTGAGAGATGAAG+TGG | - | chr1_4:28860003-28860022 | None:intergenic | 55.0% | |
| GCTAAGTTCAGAGCGCGTGA+AGG | + | chr1_4:28860474-28860493 | Msa0158900:CDS | 55.0% | |
| !! | CGCTTCCTTGCGCATTGGTT+GGG | + | chr1_4:28860545-28860564 | Msa0158900:CDS | 55.0% |
| GGGGCAAGAAGGGGTTCTTC+TGG | - | chr1_4:28859833-28859852 | None:intergenic | 60.0% | |
| ! | GGTCTGGGTTTGGGGCAAGA+AGG | - | chr1_4:28859844-28859863 | None:intergenic | 60.0% |
| AGGCACGTGCTTCGGAGACT+TGG | - | chr1_4:28860090-28860109 | None:intergenic | 60.0% | |
| ! | GCGCTTCCTTGCGCATTGGT+TGG | + | chr1_4:28860544-28860563 | Msa0158900:CDS | 60.0% |
| GGGGCAAGAAGGGGTTCTTC+TGG | - | chr1_4:28859833-28859852 | None:intergenic | 60.0% | |
| ! | GGTCTGGGTTTGGGGCAAGA+AGG | - | chr1_4:28859844-28859863 | None:intergenic | 60.0% |
| AGGCACGTGCTTCGGAGACT+TGG | - | chr1_4:28860090-28860109 | None:intergenic | 60.0% | |
| ! | GCGCTTCCTTGCGCATTGGT+TGG | + | chr1_4:28860544-28860563 | Msa0158900:CDS | 60.0% |
| AGTGGCGTTCGCCGTCAGTG+AGG | - | chr1_4:28859985-28860004 | None:intergenic | 65.0% | |
| TTCGAGGACGATGCCGTCGG+AGG | - | chr1_4:28860038-28860057 | None:intergenic | 65.0% | |
| CGACGCGCTTCCTTGCGCAT+TGG | + | chr1_4:28860540-28860559 | Msa0158900:CDS | 65.0% | |
| AGTGGCGTTCGCCGTCAGTG+AGG | - | chr1_4:28859985-28860004 | None:intergenic | 65.0% | |
| TTCGAGGACGATGCCGTCGG+AGG | - | chr1_4:28860038-28860057 | None:intergenic | 65.0% | |
| CGACGCGCTTCCTTGCGCAT+TGG | + | chr1_4:28860540-28860559 | Msa0158900:CDS | 65.0% | |
| GCCTTCTTCGCCGCCTCCGA+CGG | + | chr1_4:28860022-28860041 | Msa0158900:CDS | 70.0% | |
| GAGGACGATGCCGTCGGAGG+CGG | - | chr1_4:28860035-28860054 | None:intergenic | 70.0% | |
| GCCTTCTTCGCCGCCTCCGA+CGG | + | chr1_4:28860022-28860041 | Msa0158900:CDS | 70.0% | |
| GAGGACGATGCCGTCGGAGG+CGG | - | chr1_4:28860035-28860054 | None:intergenic | 70.0% | |
| CGGAGGCGGCGAAGAAGGCG+AGG | - | chr1_4:28860021-28860040 | None:intergenic | 75.0% | |
| GCCGTCGGAGGCGGCGAAGA+AGG | - | chr1_4:28860026-28860045 | None:intergenic | 75.0% | |
| CGGAGGCGGCGAAGAAGGCG+AGG | - | chr1_4:28860021-28860040 | None:intergenic | 75.0% | |
| GCCGTCGGAGGCGGCGAAGA+AGG | - | chr1_4:28860026-28860045 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 28859818 | 28860810 | 28859818 | ID=Msa0158900;Name=Msa0158900 |
| chr1_4 | mRNA | 28859818 | 28860810 | 28859818 | ID=Msa0158900-mRNA-1;Parent=Msa0158900;Name=Msa0158900-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0|-1|0|1|-1|1|1|0|330 |
| chr1_4 | exon | 28859818 | 28860810 | 28859818 | ID=Msa0158900-mRNA-1:exon:9283;Parent=Msa0158900-mRNA-1 |
| chr1_4 | CDS | 28859818 | 28860810 | 28859818 | ID=Msa0158900-mRNA-1:cds;Parent=Msa0158900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
