AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0456670


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0456670 MtrunA17_Chr3g0103671 98.507 268 2 1 1 266 1 268 0.0 538
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0456670 AT2G29570.1 89.057 265 28 1 1 265 1 264 6.22e-179 493
Msa0456670 AT1G07370.1 90.152 264 25 1 1 264 1 263 1.66e-178 491

Find 91 sgRNAs with CRISPR-Local

Find 209 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGAACGAGATCTGGGAATT+AGG 0.183229 3_3:+50785684 None:intergenic
AATTAGGGTTTCGACGGTTT+TGG 0.230962 3_3:+50785717 None:intergenic
TGTTTGCCTGGCTATGAATT+TGG 0.266269 3_3:-50783464 Msa0456670:three_prime_UTR
TTTAGTTGGATTGGCATCTT+AGG 0.268656 3_3:-50783543 Msa0456670:exon
TTGTGACCGGAATCTTTCTA+TGG 0.271798 3_3:-50785478 Msa0456670:CDS
TTCACTTCTCAAGAAGGTTT+TGG 0.284648 3_3:-50785634 Msa0456670:CDS
TGATGATATCATTACTATTA+AGG 0.286022 3_3:-50785409 Msa0456670:CDS
ACATTGCCTAATGGTTGTTC+TGG 0.290186 3_3:-50783189 Msa0456670:three_prime_UTR
TAGTGAGCACCTTGGAATTC+CGG 0.336220 3_3:-50784241 Msa0456670:CDS
CTAACATGGTGAACGAGATC+TGG 0.352271 3_3:+50785676 None:intergenic
TTGCTGAGATGGGTTATGTT+AGG 0.359199 3_3:-50783618 Msa0456670:CDS
GGGTTATGTTAGGTTCTATC+TGG 0.362548 3_3:-50783608 Msa0456670:CDS
GAGGGAGAGGATTTATATAG+TGG 0.378424 3_3:+50785777 None:intergenic
TTAGAACTCCGTCTAGTTCA+AGG 0.383436 3_3:-50785657 Msa0456670:CDS
GGGTATGAATCTGAACAATA+TGG 0.386205 3_3:-50785457 Msa0456670:CDS
AAAATCAGAAATCTTGTCTT+GGG 0.388430 3_3:+50784287 None:intergenic
TGAACGAGATCTGGGAATTA+GGG 0.389995 3_3:+50785685 None:intergenic
GAGCTGCAAACATAGTTTGC+AGG 0.393234 3_3:-50783980 Msa0456670:CDS
AGCCCCAAGTTTAGTTGGAT+TGG 0.396654 3_3:-50783552 Msa0456670:exon
AACCAAGCCCCAAGTTTAGT+TGG 0.402105 3_3:-50783557 Msa0456670:exon
TTGAATTTGGATGTAGTTGT+AGG 0.403619 3_3:-50783518 Msa0456670:three_prime_UTR
CAAAATCAGAAATCTTGTCT+TGG 0.404879 3_3:+50784286 None:intergenic
GCGCTTCTGCTTCGTTCTGA+AGG 0.406261 3_3:-50785516 Msa0456670:CDS
AGGTATTGCGTCTGTTTGCC+TGG 0.407693 3_3:-50783476 Msa0456670:three_prime_UTR
CGCTTCTGCTTCGTTCTGAA+GGG 0.421338 3_3:-50785515 Msa0456670:CDS
TGTTATTAAACATTGCCTAA+TGG 0.423949 3_3:-50783198 Msa0456670:three_prime_UTR
TCATACCCATAGAAAGATTC+CGG 0.424128 3_3:+50785472 None:intergenic
ATCCAACTAAACTTGGGGCT+TGG 0.425019 3_3:+50783555 None:intergenic
AACTTCGATTGTTCCTCTAC+TGG 0.432516 3_3:-50785582 Msa0456670:CDS
ATCTTGTACTCAACAACAAC+TGG 0.435854 3_3:+50783640 None:intergenic
CATTTCACGAATCCCGCCTT+AGG 0.440653 3_3:-50785813 Msa0456670:five_prime_UTR
TGGTTTCTCTCTTCAAGCCA+TGG 0.449647 3_3:-50785562 Msa0456670:CDS
CTGAATATGATGCCATTGTT+AGG 0.450696 3_3:-50784215 Msa0456670:CDS
TGTAAAGATCTTAGTAGCAT+TGG 0.452246 3_3:-50784165 Msa0456670:CDS
GGAAGAGAGTGAAGAGGGAG+AGG 0.453601 3_3:+50785764 None:intergenic
TGCAGCTCCAATGTCACCCT+TGG 0.455509 3_3:+50783995 None:intergenic
GATGCCAATCCAACTAAACT+TGG 0.455942 3_3:+50783548 None:intergenic
ATTACTATTAAGGCTGATGA+TGG 0.460832 3_3:-50785399 Msa0456670:CDS
TCAAGGTTCACTTCTCAAGA+AGG 0.468437 3_3:-50785640 Msa0456670:CDS
AAGAGGGAAGAGAGTGAAGA+GGG 0.471499 3_3:+50785759 None:intergenic
AGTTGTCATCTCGGTTACTA+AGG 0.478522 3_3:-50784036 Msa0456670:CDS
TTGTGTTGCAGTTGTCATCT+CGG 0.495202 3_3:-50784045 Msa0456670:intron
TTGAACATTATCGTTGTGAC+CGG 0.503954 3_3:-50785491 Msa0456670:CDS
TCTATGACAGTAGCATCATC+AGG 0.509310 3_3:+50783769 None:intergenic
TGCCATCTGCTGAGTTTGCT+AGG 0.512820 3_3:-50784191 Msa0456670:CDS
CTTCTTCCAAATTCATAGCC+AGG 0.513142 3_3:+50783458 None:intergenic
ATGCCAATCCAACTAAACTT+GGG 0.516133 3_3:+50783549 None:intergenic
CAGACTGATGGTAACTGTGC+TGG 0.524507 3_3:+50783675 None:intergenic
GGCAAACAGACGCAATACCT+TGG 0.531023 3_3:+50783479 None:intergenic
TAACATGGTGAACGAGATCT+GGG 0.534285 3_3:+50785677 None:intergenic
AGCAACATGGCTAGAATCCA+TGG 0.535866 3_3:+50785545 None:intergenic
ATGGCATCATATTCAGCCTC+CGG 0.535879 3_3:+50784222 None:intergenic
TGAGTACAAGATTGCTGAGA+TGG 0.541644 3_3:-50783629 Msa0456670:CDS
ATTCCGCAAAACACAAAGGC+GGG 0.542792 3_3:-50785844 None:intergenic
CTTAGTAGCATTGGTGACAC+TGG 0.547229 3_3:-50784156 Msa0456670:intron
AAAGAGGGAAGAGAGTGAAG+AGG 0.548679 3_3:+50785758 None:intergenic
TTGGGAAATTAGGGTTTCGA+CGG 0.556716 3_3:+50785711 None:intergenic
TGCATTCCAGAACAACCATT+AGG 0.562470 3_3:+50783183 None:intergenic
TTTAAAACAATGTTAAACAA+TGG 0.563084 3_3:-50783407 Msa0456670:three_prime_UTR
AGTAGAGGAACAATCGAAGT+TGG 0.565927 3_3:+50785584 None:intergenic
TGTGACCGGAATCTTTCTAT+GGG 0.566095 3_3:-50785477 Msa0456670:CDS
GGATGTGCATTCTCCACTGT+AGG 0.566413 3_3:-50783386 Msa0456670:three_prime_UTR
ACTAGGGCTTTCGAACATGA+AGG 0.573205 3_3:+50785362 None:intergenic
TGTCATCTCGGTTACTAAGG+AGG 0.575341 3_3:-50784033 Msa0456670:CDS
GTCATCTCGGTTACTAAGGA+GGG 0.577137 3_3:-50784032 Msa0456670:CDS
GCGAAGATGTTGAAGTGTGC+TGG 0.584665 3_3:-50785435 Msa0456670:CDS
TGGAAGATTCTAGAAACCTA+AGG 0.585123 3_3:+50785797 None:intergenic
ATCCTAGCAAACTCAGCAGA+TGG 0.593618 3_3:+50784189 None:intergenic
GATGTGCATTCTCCACTGTA+GGG 0.594032 3_3:-50783385 Msa0456670:three_prime_UTR
GTATCTTAATGCAAATTGCA+AGG 0.597267 3_3:+50783729 None:intergenic
AGATTCTAGAAACCTAAGGC+GGG 0.608966 3_3:+50785801 None:intergenic
TTACTATTAAGGCTGATGAT+GGG 0.610804 3_3:-50785398 Msa0456670:CDS
TGCCAATCCAACTAAACTTG+GGG 0.611382 3_3:+50783550 None:intergenic
TAGTTCATTTGACAGACTGA+TGG 0.616907 3_3:+50783663 None:intergenic
ATTCAGCCTCCGGAATTCCA+AGG 0.619118 3_3:+50784232 None:intergenic
AATGCAAATTGCAAGGACAC+AGG 0.621947 3_3:+50783736 None:intergenic
TAAAATAGAAAGCCCTACAG+TGG 0.623143 3_3:+50783373 None:intergenic
GAGTACAAGATTGCTGAGAT+GGG 0.631104 3_3:-50783628 Msa0456670:CDS
ATGGTAACTGTGCTGGACAA+AGG 0.631448 3_3:+50783682 None:intergenic
GCAGAACACTACTGTGGACA+AGG 0.634025 3_3:-50783958 Msa0456670:intron
AACTAGACGGAGTTCTAACA+TGG 0.638008 3_3:+50785662 None:intergenic
GACATTGATAGTGAGCACCT+TGG 0.640024 3_3:-50784249 Msa0456670:CDS
AGCAGATGGCATCCTAACAA+TGG 0.641376 3_3:+50784203 None:intergenic
ATAAATTCCGCAAAACACAA+AGG 0.658484 3_3:-50785848 None:intergenic
AATTCCGCAAAACACAAAGG+CGG 0.670644 3_3:-50785845 None:intergenic
GAAGCGCAACAAGAGCAACA+TGG 0.673728 3_3:+50785532 None:intergenic
AAGATTCTAGAAACCTAAGG+CGG 0.676362 3_3:+50785800 None:intergenic
TGAGCACCTTGGAATTCCGG+AGG 0.683837 3_3:-50784238 Msa0456670:CDS
GAAGTGAACCTTGAACTAGA+CGG 0.688677 3_3:+50785649 None:intergenic
TTGAAGAGAGAAACCAGTAG+AGG 0.691711 3_3:+50785569 None:intergenic
TTGCAGGCAGAACACTACTG+TGG 0.709888 3_3:-50783964 Msa0456670:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAGTTTTAGTGTTAATTA+GGG - chr3_3:50783672-50783691 Msa0456670:CDS 15.0%
!! TGATGTATTTGATAAATTTA+AGG - chr3_3:50784506-50784525 Msa0456670:intron 15.0%
!! GATGTATTTGATAAATTTAA+GGG - chr3_3:50784507-50784526 Msa0456670:intron 15.0%
!! GTTGATTAATATTTGTAATT+CGG - chr3_3:50784917-50784936 Msa0456670:intron 15.0%
!!! TTTTAATTGACATTTTTACA+TGG - chr3_3:50785170-50785189 Msa0456670:intron 15.0%
!!! TTTAAAACAATGTTAAACAA+TGG - chr3_3:50785580-50785599 Msa0456670:CDS 15.0%
!! TGATGATATCATTACTATTA+AGG - chr3_3:50783578-50783597 Msa0456670:CDS 20.0%
!! TAACACTAAAACTAAAGAAT+TGG + chr3_3:50783668-50783687 None:intergenic 20.0%
!!! CTTTAGTTTTAGTGTTAATT+AGG - chr3_3:50783671-50783690 Msa0456670:CDS 20.0%
!!! TGTTAATTAGGGTTTTAATT+GGG - chr3_3:50783683-50783702 Msa0456670:CDS 20.0%
!!! TCATTGTTGTATGATTATTT+TGG - chr3_3:50783724-50783743 Msa0456670:CDS 20.0%
!!! ATGATTATTTTGGTGTTAAT+TGG - chr3_3:50783734-50783753 Msa0456670:CDS 20.0%
!!! TGATTATTTTGGTGTTAATT+GGG - chr3_3:50783735-50783754 Msa0456670:CDS 20.0%
!!! AATGCTAATTTTGTGTTATT+TGG - chr3_3:50783813-50783832 Msa0456670:intron 20.0%
!!! ATGCTAATTTTGTGTTATTT+GGG - chr3_3:50783814-50783833 Msa0456670:intron 20.0%
!!! ATTTTAGTTTGTTACCTATA+AGG - chr3_3:50783911-50783930 Msa0456670:intron 20.0%
!!! TTTTAGTTTGTTACCTATAA+GGG - chr3_3:50783912-50783931 Msa0456670:intron 20.0%
!! CTAAAATTCAAATCATAGAT+CGG + chr3_3:50784120-50784139 None:intergenic 20.0%
!!! GATCTATGATTTGAATTTTA+GGG - chr3_3:50784119-50784138 Msa0456670:intron 20.0%
!! TGATATATTTGATCAATTTC+AGG - chr3_3:50784198-50784217 Msa0456670:CDS 20.0%
!! GATATATTTGATCAATTTCA+GGG - chr3_3:50784199-50784218 Msa0456670:CDS 20.0%
!! TGTTAAATTCTGTATGATTT+GGG - chr3_3:50784389-50784408 Msa0456670:intron 20.0%
! AAAGAAAACGAAACTTACTA+GGG + chr3_3:50783644-50783663 None:intergenic 25.0%
! TAAAGAAAACGAAACTTACT+AGG + chr3_3:50783645-50783664 None:intergenic 25.0%
!!! GTGTTAATTAGGGTTTTAAT+TGG - chr3_3:50783682-50783701 Msa0456670:CDS 25.0%
!!! GGTTTTAATTGGGTTAATTA+GGG - chr3_3:50783693-50783712 Msa0456670:CDS 25.0%
!!! GATTATTTTGGTGTTAATTG+GGG - chr3_3:50783736-50783755 Msa0456670:CDS 25.0%
!!! TGCTAATTTTGTGTTATTTG+GGG - chr3_3:50783815-50783834 Msa0456670:intron 25.0%
! GTGTTAATTGATTGAATCTT+TGG - chr3_3:50783878-50783897 Msa0456670:intron 25.0%
! CTATTAAAAAAGACCCTTAT+AGG + chr3_3:50783928-50783947 None:intergenic 25.0%
!!! CTATAAGGGTCTTTTTTAAT+AGG - chr3_3:50783926-50783945 Msa0456670:intron 25.0%
!!! TGTTTTTGTAACTCTTCTTT+TGG - chr3_3:50784026-50784045 Msa0456670:CDS 25.0%
!! CGATCTATGATTTGAATTTT+AGG - chr3_3:50784118-50784137 Msa0456670:intron 25.0%
!! TTTTGGTATCTATTTTGTTG+CGG - chr3_3:50784266-50784285 Msa0456670:CDS 25.0%
! TGGTCTATTTGATAAATTTC+AGG - chr3_3:50784359-50784378 Msa0456670:intron 25.0%
! GGTCTATTTGATAAATTTCA+GGG - chr3_3:50784360-50784379 Msa0456670:intron 25.0%
! GTGTTAAATTCTGTATGATT+TGG - chr3_3:50784388-50784407 Msa0456670:intron 25.0%
! ACACATAACTTTAACTACAA+AGG + chr3_3:50784474-50784493 None:intergenic 25.0%
!!! ATGTTTTGGTATCATATTTG+TGG - chr3_3:50784571-50784590 Msa0456670:intron 25.0%
!!! TGACTTATTTTCTGACTTAT+TGG - chr3_3:50784606-50784625 Msa0456670:intron 25.0%
!!! GACTTATTTTCTGACTTATT+GGG - chr3_3:50784607-50784626 Msa0456670:intron 25.0%
! TAAAAACATATGAACCACAA+TGG + chr3_3:50784636-50784655 None:intergenic 25.0%
!!! TGGTTCATATGTTTTTATAG+TGG - chr3_3:50784639-50784658 Msa0456670:intron 25.0%
! AAAATCAGAAATCTTGTCTT+GGG + chr3_3:50784703-50784722 None:intergenic 25.0%
!! ATACATGAATTCTTTTACGA+AGG - chr3_3:50785277-50785296 Msa0456670:intron 25.0%
!!! GTTTAACATTGTTTTAAACG+AGG + chr3_3:50785578-50785597 None:intergenic 25.0%
!! ATTTGCTGATAGAACAAATT+TGG + chr3_3:50785719-50785738 None:intergenic 25.0%
! AAAACAGTAGAAAAAAACGT+AGG + chr3_3:50785762-50785781 None:intergenic 25.0%
! TGTTATTAAACATTGCCTAA+TGG - chr3_3:50785789-50785808 Msa0456670:five_prime_UTR 25.0%
!! TTAGGGTTTTTGGGAAATTA+GGG + chr3_3:50783288-50783307 None:intergenic 30.0%
!! ATTAGGGTTTTTGGGAAATT+AGG + chr3_3:50783289-50783308 None:intergenic 30.0%
ATTACTATTAAGGCTGATGA+TGG - chr3_3:50783588-50783607 Msa0456670:CDS 30.0%
TTACTATTAAGGCTGATGAT+GGG - chr3_3:50783589-50783608 Msa0456670:CDS 30.0%
!!! GGGTTTTAATTGGGTTAATT+AGG - chr3_3:50783692-50783711 Msa0456670:CDS 30.0%
! AATTGGGTTAATTAGGGTTT+TGG - chr3_3:50783699-50783718 Msa0456670:CDS 30.0%
! ATTGGGTTAATTAGGGTTTT+GGG - chr3_3:50783700-50783719 Msa0456670:CDS 30.0%
! TTGGGGTTGTTTAAAATGTT+AGG - chr3_3:50783771-50783790 Msa0456670:CDS 30.0%
! TGGGGTTGTTTAAAATGTTA+GGG - chr3_3:50783772-50783791 Msa0456670:CDS 30.0%
!!! TTTTGTGTTATTTGGGGATT+AGG - chr3_3:50783821-50783840 Msa0456670:intron 30.0%
!! TTTGTGTTATTTGGGGATTA+GGG - chr3_3:50783822-50783841 Msa0456670:intron 30.0%
TGTTCAATGTTAATTCTGCA+TGG - chr3_3:50783851-50783870 Msa0456670:intron 30.0%
GTTCAATGTTAATTCTGCAT+GGG - chr3_3:50783852-50783871 Msa0456670:intron 30.0%
GATGTTTATTCGCTTGATAT+TGG - chr3_3:50783972-50783991 Msa0456670:CDS 30.0%
! GAACTCTTTTGCTAAAGAAT+GGG - chr3_3:50784076-50784095 Msa0456670:intron 30.0%
!! GTTTTAGTGTTCAATACTGT+AGG - chr3_3:50784221-50784240 Msa0456670:CDS 30.0%
TAGATACCAAAACATGAACA+GGG + chr3_3:50784258-50784277 None:intergenic 30.0%
ATAGATACCAAAACATGAAC+AGG + chr3_3:50784259-50784278 None:intergenic 30.0%
ATTTCAGGGTTACATGTTAT+CGG - chr3_3:50784323-50784342 Msa0456670:intron 30.0%
CAAAATCAGAAATCTTGTCT+TGG + chr3_3:50784704-50784723 None:intergenic 30.0%
TGTAAAGATCTTAGTAGCAT+TGG - chr3_3:50784822-50784841 Msa0456670:intron 30.0%
! CACTTTTGTTCATCTGTTAT+AGG - chr3_3:50784858-50784877 Msa0456670:intron 30.0%
!!! TTTTACATGGTTGTTTTTGC+TGG - chr3_3:50785183-50785202 Msa0456670:intron 30.0%
GTATCTTAATGCAAATTGCA+AGG + chr3_3:50785261-50785280 None:intergenic 30.0%
! TCATCATCTTCCTCTATTTT+TGG + chr3_3:50785407-50785426 None:intergenic 30.0%
TTGAATTTGGATGTAGTTGT+AGG - chr3_3:50785469-50785488 Msa0456670:CDS 30.0%
! GATGCTTTTATACATTTCCA+AGG - chr3_3:50785491-50785510 Msa0456670:CDS 30.0%
!!! TAACATTGTTTTAAACGAGG+TGG + chr3_3:50785575-50785594 None:intergenic 30.0%
! AAGATTCTAGAAACCTAAGG+CGG + chr3_3:50783190-50783209 None:intergenic 35.0%
! TGGAAGATTCTAGAAACCTA+AGG + chr3_3:50783193-50783212 None:intergenic 35.0%
! ATCTGGGAATTAGGGTTTTT+GGG + chr3_3:50783297-50783316 None:intergenic 35.0%
! TTCACTTCTCAAGAAGGTTT+TGG - chr3_3:50783353-50783372 Msa0456670:three_prime_UTR 35.0%
TTGAACATTATCGTTGTGAC+CGG - chr3_3:50783496-50783515 Msa0456670:three_prime_UTR 35.0%
TCATACCCATAGAAAGATTC+CGG + chr3_3:50783518-50783537 None:intergenic 35.0%
GGGTATGAATCTGAACAATA+TGG - chr3_3:50783530-50783549 Msa0456670:three_prime_UTR 35.0%
!!! TTTTGGTGTTAATTGGGGTT+AGG - chr3_3:50783741-50783760 Msa0456670:CDS 35.0%
!! TTTGGTGTTAATTGGGGTTA+GGG - chr3_3:50783742-50783761 Msa0456670:CDS 35.0%
! GGAACTCTTTTGCTAAAGAA+TGG - chr3_3:50784075-50784094 Msa0456670:intron 35.0%
TTGTTTGGGTATCATACTTG+TGG - chr3_3:50784424-50784443 Msa0456670:intron 35.0%
TAACCACACAAAAACAAGTC+AGG + chr3_3:50784670-50784689 None:intergenic 35.0%
!!! TGATTTTGAGATGAAGCTGA+TGG - chr3_3:50784716-50784735 Msa0456670:intron 35.0%
CTGAATATGATGCCATTGTT+AGG - chr3_3:50784772-50784791 Msa0456670:intron 35.0%
TTTATCACATGTTCCAACCA+TGG - chr3_3:50785071-50785090 Msa0456670:intron 35.0%
TTATCACATGTTCCAACCAT+GGG - chr3_3:50785072-50785091 Msa0456670:intron 35.0%
TTATAAAAAGTCCCCATGGT+TGG + chr3_3:50785087-50785106 None:intergenic 35.0%
! GGACTTTTTATAAGCGTTAC+AGG - chr3_3:50785094-50785113 Msa0456670:intron 35.0%
TAGTTCATTTGACAGACTGA+TGG + chr3_3:50785327-50785346 None:intergenic 35.0%
ATCTTGTACTCAACAACAAC+TGG + chr3_3:50785350-50785369 None:intergenic 35.0%
ATGCCAATCCAACTAAACTT+GGG + chr3_3:50785441-50785460 None:intergenic 35.0%
!! TTTAGTTGGATTGGCATCTT+AGG - chr3_3:50785444-50785463 Msa0456670:CDS 35.0%
!!! GGCATCTTAGGTTTTGAATT+TGG - chr3_3:50785456-50785475 Msa0456670:CDS 35.0%
TAAAATAGAAAGCCCTACAG+TGG + chr3_3:50785617-50785636 None:intergenic 35.0%
! AGATTCTAGAAACCTAAGGC+GGG + chr3_3:50783189-50783208 None:intergenic 40.0%
GAGGGAGAGGATTTATATAG+TGG + chr3_3:50783213-50783232 None:intergenic 40.0%
!!! TTTCGACGGTTTTGGGATTT+GGG + chr3_3:50783265-50783284 None:intergenic 40.0%
! ATTAGGGTTTCGACGGTTTT+GGG + chr3_3:50783272-50783291 None:intergenic 40.0%
! AATTAGGGTTTCGACGGTTT+TGG + chr3_3:50783273-50783292 None:intergenic 40.0%
TTGGGAAATTAGGGTTTCGA+CGG + chr3_3:50783279-50783298 None:intergenic 40.0%
! GATCTGGGAATTAGGGTTTT+TGG + chr3_3:50783298-50783317 None:intergenic 40.0%
TGAACGAGATCTGGGAATTA+GGG + chr3_3:50783305-50783324 None:intergenic 40.0%
TAACATGGTGAACGAGATCT+GGG + chr3_3:50783313-50783332 None:intergenic 40.0%
! AACTAGACGGAGTTCTAACA+TGG + chr3_3:50783328-50783347 None:intergenic 40.0%
! TTAGAACTCCGTCTAGTTCA+AGG - chr3_3:50783330-50783349 Msa0456670:three_prime_UTR 40.0%
GAAGTGAACCTTGAACTAGA+CGG + chr3_3:50783341-50783360 None:intergenic 40.0%
TCAAGGTTCACTTCTCAAGA+AGG - chr3_3:50783347-50783366 Msa0456670:three_prime_UTR 40.0%
AGTAGAGGAACAATCGAAGT+TGG + chr3_3:50783406-50783425 None:intergenic 40.0%
AACTTCGATTGTTCCTCTAC+TGG - chr3_3:50783405-50783424 Msa0456670:three_prime_UTR 40.0%
TTGAAGAGAGAAACCAGTAG+AGG + chr3_3:50783421-50783440 None:intergenic 40.0%
TTGTGACCGGAATCTTTCTA+TGG - chr3_3:50783509-50783528 Msa0456670:three_prime_UTR 40.0%
TGTGACCGGAATCTTTCTAT+GGG - chr3_3:50783510-50783529 Msa0456670:three_prime_UTR 40.0%
TGTTAATTGGGGTTAGGGTT+TGG - chr3_3:50783747-50783766 Msa0456670:CDS 40.0%
TTATTTGGGGATTAGGGCTT+TGG - chr3_3:50783828-50783847 Msa0456670:intron 40.0%
TAGATGCTTGTATGCTGAGT+AGG - chr3_3:50784053-50784072 Msa0456670:intron 40.0%
AGATGCTTGTATGCTGAGTA+GGG - chr3_3:50784054-50784073 Msa0456670:intron 40.0%
TATCTTGTATGTGCCCTGTT+TGG - chr3_3:50784162-50784181 Msa0456670:CDS 40.0%
ATCTTGTATGTGCCCTGTTT+GGG - chr3_3:50784163-50784182 Msa0456670:CDS 40.0%
GTAACCCTGAAATTGACCAA+GGG + chr3_3:50784316-50784335 None:intergenic 40.0%
TGTAACCCTGAAATTGACCA+AGG + chr3_3:50784317-50784336 None:intergenic 40.0%
! GGTATCCTCTGTTCTTGTTT+GGG - chr3_3:50784410-50784429 Msa0456670:intron 40.0%
TGATACCCAAACAAGAACAG+AGG + chr3_3:50784418-50784437 None:intergenic 40.0%
! TCTCTGCTCTGTTCATGTTT+TGG - chr3_3:50784557-50784576 Msa0456670:intron 40.0%
!!! GATCCTGACTTGTTTTTGTG+TGG - chr3_3:50784664-50784683 Msa0456670:intron 40.0%
TTGTGTTGCAGTTGTCATCT+CGG - chr3_3:50784942-50784961 Msa0456670:intron 40.0%
AGTTGTCATCTCGGTTACTA+AGG - chr3_3:50784951-50784970 Msa0456670:intron 40.0%
! GGTGTGAAGTTTTCAACCAA+GGG - chr3_3:50784976-50784995 Msa0456670:intron 40.0%
! TTTTCAACCAAGGGTGACAT+TGG - chr3_3:50784985-50785004 Msa0456670:intron 40.0%
TATCACATGTTCCAACCATG+GGG - chr3_3:50785073-50785092 Msa0456670:intron 40.0%
ACGCTTATAAAAAGTCCCCA+TGG + chr3_3:50785091-50785110 None:intergenic 40.0%
TCTATGACAGTAGCATCATC+AGG + chr3_3:50785221-50785240 None:intergenic 40.0%
AATGCAAATTGCAAGGACAC+AGG + chr3_3:50785254-50785273 None:intergenic 40.0%
TGAGTACAAGATTGCTGAGA+TGG - chr3_3:50785358-50785377 Msa0456670:intron 40.0%
GAGTACAAGATTGCTGAGAT+GGG - chr3_3:50785359-50785378 Msa0456670:intron 40.0%
!! TTGCTGAGATGGGTTATGTT+AGG - chr3_3:50785369-50785388 Msa0456670:CDS 40.0%
GGGTTATGTTAGGTTCTATC+TGG - chr3_3:50785379-50785398 Msa0456670:CDS 40.0%
! CTATCTGGCTCCAAAAATAG+AGG - chr3_3:50785394-50785413 Msa0456670:CDS 40.0%
TGCCAATCCAACTAAACTTG+GGG + chr3_3:50785440-50785459 None:intergenic 40.0%
GATGCCAATCCAACTAAACT+TGG + chr3_3:50785442-50785461 None:intergenic 40.0%
TGTTTGCCTGGCTATGAATT+TGG - chr3_3:50785523-50785542 Msa0456670:CDS 40.0%
CTTCTTCCAAATTCATAGCC+AGG + chr3_3:50785532-50785551 None:intergenic 40.0%
ACATTGCCTAATGGTTGTTC+TGG - chr3_3:50785798-50785817 Msa0456670:five_prime_UTR 40.0%
TGCATTCCAGAACAACCATT+AGG + chr3_3:50785807-50785826 None:intergenic 40.0%
AAGAGGGAAGAGAGTGAAGA+GGG + chr3_3:50783231-50783250 None:intergenic 45.0%
AAAGAGGGAAGAGAGTGAAG+AGG + chr3_3:50783232-50783251 None:intergenic 45.0%
!!! TTCGACGGTTTTGGGATTTG+GGG + chr3_3:50783264-50783283 None:intergenic 45.0%
!!! GTTTCGACGGTTTTGGGATT+TGG + chr3_3:50783266-50783285 None:intergenic 45.0%
GTGAACGAGATCTGGGAATT+AGG + chr3_3:50783306-50783325 None:intergenic 45.0%
CTAACATGGTGAACGAGATC+TGG + chr3_3:50783314-50783333 None:intergenic 45.0%
!!! GAAGGTTTTGGAGTCGATCA+AGG - chr3_3:50783365-50783384 Msa0456670:three_prime_UTR 45.0%
TGGTTTCTCTCTTCAAGCCA+TGG - chr3_3:50783425-50783444 Msa0456670:three_prime_UTR 45.0%
AGCAACATGGCTAGAATCCA+TGG + chr3_3:50783445-50783464 None:intergenic 45.0%
ACTAGGGCTTTCGAACATGA+AGG + chr3_3:50783628-50783647 None:intergenic 45.0%
! ATTGGGGTTAGGGTTTGGTT+TGG - chr3_3:50783752-50783771 Msa0456670:CDS 45.0%
! TTGGGGTTAGGGTTTGGTTT+GGG - chr3_3:50783753-50783772 Msa0456670:CDS 45.0%
GTTAAGCATGCACCCAAACA+GGG + chr3_3:50784178-50784197 None:intergenic 45.0%
AGTTAAGCATGCACCCAAAC+AGG + chr3_3:50784179-50784198 None:intergenic 45.0%
! TGTGTGCCCTGTTCATGTTT+TGG - chr3_3:50784249-50784268 Msa0456670:CDS 45.0%
CTAGCCCTTGGTCAATTTCA+GGG - chr3_3:50784309-50784328 Msa0456670:intron 45.0%
TTATCGGTCGCATGCTTAAC+TGG - chr3_3:50784339-50784358 Msa0456670:intron 45.0%
GGGTATCCTCTGTTCTTGTT+TGG - chr3_3:50784409-50784428 Msa0456670:intron 45.0%
GACTTATTGGGTAGCCATTG+TGG - chr3_3:50784619-50784638 Msa0456670:intron 45.0%
!! GACATTGATAGTGAGCACCT+TGG - chr3_3:50784738-50784757 Msa0456670:intron 45.0%
TAGTGAGCACCTTGGAATTC+CGG - chr3_3:50784746-50784765 Msa0456670:intron 45.0%
ATGGCATCATATTCAGCCTC+CGG + chr3_3:50784768-50784787 None:intergenic 45.0%
AGCAGATGGCATCCTAACAA+TGG + chr3_3:50784787-50784806 None:intergenic 45.0%
ATCCTAGCAAACTCAGCAGA+TGG + chr3_3:50784801-50784820 None:intergenic 45.0%
!! CTTAGTAGCATTGGTGACAC+TGG - chr3_3:50784831-50784850 Msa0456670:intron 45.0%
TGTCATCTCGGTTACTAAGG+AGG - chr3_3:50784954-50784973 Msa0456670:intron 45.0%
GTCATCTCGGTTACTAAGGA+GGG - chr3_3:50784955-50784974 Msa0456670:intron 45.0%
! GGGTGTGAAGTTTTCAACCA+AGG - chr3_3:50784975-50784994 Msa0456670:intron 45.0%
! GAGCTGCAAACATAGTTTGC+AGG - chr3_3:50785007-50785026 Msa0456670:intron 45.0%
ATGGTAACTGTGCTGGACAA+AGG + chr3_3:50785308-50785327 None:intergenic 45.0%
AACCAAGCCCCAAGTTTAGT+TGG - chr3_3:50785430-50785449 Msa0456670:CDS 45.0%
ATCCAACTAAACTTGGGGCT+TGG + chr3_3:50785435-50785454 None:intergenic 45.0%
AGCCCCAAGTTTAGTTGGAT+TGG - chr3_3:50785435-50785454 Msa0456670:CDS 45.0%
GATGTGCATTCTCCACTGTA+GGG - chr3_3:50785602-50785621 Msa0456670:CDS 45.0%
CATTTCACGAATCCCGCCTT+AGG - chr3_3:50783174-50783193 Msa0456670:three_prime_UTR 50.0%
TTGGGGGGGGAAATGAAAGA+GGG + chr3_3:50783247-50783266 None:intergenic 50.0%
TTTGGGGGGGGAAATGAAAG+AGG + chr3_3:50783248-50783267 None:intergenic 50.0%
!!! TCGACGGTTTTGGGATTTGG+GGG + chr3_3:50783263-50783282 None:intergenic 50.0%
GAAGCGCAACAAGAGCAACA+TGG + chr3_3:50783458-50783477 None:intergenic 50.0%
! CGCTTCTGCTTCGTTCTGAA+GGG - chr3_3:50783472-50783491 Msa0456670:three_prime_UTR 50.0%
GCGAAGATGTTGAAGTGTGC+TGG - chr3_3:50783552-50783571 Msa0456670:exon 50.0%
!! TGGGGTTAGGGTTTGGTTTG+GGG - chr3_3:50783754-50783773 Msa0456670:CDS 50.0%
! ATGACTTGTGAGCTAGCCCT+TGG - chr3_3:50784297-50784316 Msa0456670:intron 50.0%
GCTAGCCCTTGGTCAATTTC+AGG - chr3_3:50784308-50784327 Msa0456670:intron 50.0%
ATTCAGCCTCCGGAATTCCA+AGG + chr3_3:50784758-50784777 None:intergenic 50.0%
! TGCCATCTGCTGAGTTTGCT+AGG - chr3_3:50784796-50784815 Msa0456670:intron 50.0%
TTGCAGGCAGAACACTACTG+TGG - chr3_3:50785023-50785042 Msa0456670:intron 50.0%
GCAGAACACTACTGTGGACA+AGG - chr3_3:50785029-50785048 Msa0456670:intron 50.0%
CAGACTGATGGTAACTGTGC+TGG + chr3_3:50785315-50785334 None:intergenic 50.0%
GGCAAACAGACGCAATACCT+TGG + chr3_3:50785511-50785530 None:intergenic 50.0%
! AGGTATTGCGTCTGTTTGCC+TGG - chr3_3:50785511-50785530 Msa0456670:CDS 50.0%
GGATGTGCATTCTCCACTGT+AGG - chr3_3:50785601-50785620 Msa0456670:CDS 50.0%
GGAAGAGAGTGAAGAGGGAG+AGG + chr3_3:50783226-50783245 None:intergenic 55.0%
!!! ACGGTTTTGGGATTTGGGGG+GGG + chr3_3:50783260-50783279 None:intergenic 55.0%
!!! GACGGTTTTGGGATTTGGGG+GGG + chr3_3:50783261-50783280 None:intergenic 55.0%
!!! CGACGGTTTTGGGATTTGGG+GGG + chr3_3:50783262-50783281 None:intergenic 55.0%
GCGCTTCTGCTTCGTTCTGA+AGG - chr3_3:50783471-50783490 Msa0456670:three_prime_UTR 55.0%
TGAGCACCTTGGAATTCCGG+AGG - chr3_3:50784749-50784768 Msa0456670:intron 55.0%
TGCAGCTCCAATGTCACCCT+TGG + chr3_3:50784995-50785014 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 50783149 50785860 50783149 ID=Msa0456670;Name=Msa0456670
chr3_3 mRNA 50783149 50785860 50783149 ID=Msa0456670-mRNA-1;Parent=Msa0456670;Name=Msa0456670-mRNA-1;_AED=0.01;_eAED=0.01;_QI=178|1|1|1|0.75|0.6|5|392|266
chr3_3 exon 50783149 50783272 50783149 ID=Msa0456670-mRNA-1:exon:9668;Parent=Msa0456670-mRNA-1
chr3_3 exon 50783293 50783791 50783293 ID=Msa0456670-mRNA-1:exon:9667;Parent=Msa0456670-mRNA-1
chr3_3 exon 50783959 50784056 50783959 ID=Msa0456670-mRNA-1:exon:9666;Parent=Msa0456670-mRNA-1
chr3_3 exon 50784157 50784309 50784157 ID=Msa0456670-mRNA-1:exon:9665;Parent=Msa0456670-mRNA-1
chr3_3 exon 50785364 50785860 50785364 ID=Msa0456670-mRNA-1:exon:9664;Parent=Msa0456670-mRNA-1
chr3_3 five_prime_UTR 50785683 50785860 50785683 ID=Msa0456670-mRNA-1:five_prime_utr;Parent=Msa0456670-mRNA-1
chr3_3 CDS 50785364 50785682 50785364 ID=Msa0456670-mRNA-1:cds;Parent=Msa0456670-mRNA-1
chr3_3 CDS 50784157 50784309 50784157 ID=Msa0456670-mRNA-1:cds;Parent=Msa0456670-mRNA-1
chr3_3 CDS 50783959 50784056 50783959 ID=Msa0456670-mRNA-1:cds;Parent=Msa0456670-mRNA-1
chr3_3 CDS 50783561 50783791 50783561 ID=Msa0456670-mRNA-1:cds;Parent=Msa0456670-mRNA-1
chr3_3 three_prime_UTR 50783293 50783560 50783293 ID=Msa0456670-mRNA-1:three_prime_utr;Parent=Msa0456670-mRNA-1
chr3_3 three_prime_UTR 50783149 50783272 50783149 ID=Msa0456670-mRNA-1:three_prime_utr;Parent=Msa0456670-mRNA-1
Gene Sequence

>Msa0456670

ATGTTAGAACTCCGTCTAGTTCAAGGTTCACTTCTCAAGAAGGTTTTGGAGTCGATCAAGGAACTCGTCAACGATGCCAACTTCGATTGTTCCTCTACTGGTTTCTCTCTTCAAGCCATGGATTCTAGCCATGTTGCTCTTGTTGCGCTTCTGCTTCGTTCTGAAGGGTTTGAACATTATCGTTGTGACCGGAATCTTTCTATGGGTATGAATCTGAACAATATGGCGAAGATGTTGAAGTGTGCTGGTAATGATGATATCATTACTATTAAGGCTGATGATGGGAGTGATACTGTTACCTTCATGTTCGAAAGCCCTACCCAAGACAAGATTTCTGATTTTGAGATGAAGCTGATGGACATTGATAGTGAGCACCTTGGAATTCCGGAGGCTGAATATGATGCCATTGTTAGGATGCCATCTGCTGAGTTTGCTAGGATTTGTAAAGATCTTAGTAGCATTGGTGACACTGTTGTCATCTCGGTTACTAAGGAGGGTGTGAAGTTTTCAACCAAGGGTGACATTGGAGCTGCAAACATAGTTTGCAGGCAGAACACTACTGTGGACAAGCCTGATGATGCTACTGTCATAGAGATGAAAGAGCCTGTGTCCTTGCAATTTGCATTAAGATACATGAATTCTTTTACGAAGGCAACTCCTTTGTCCAGCACAGTTACCATCAGTCTGTCAAATGAACTACCAGTTGTTGTTGAGTACAAGATTGCTGAGATGGGTTATGTTAGGTTCTATCTGGCTCCAAAAATAGAGGAAGATGATGAAGAAACCAAGCCCCAAGTTTAG

Protein sequence

>Msa0456670

MLELRLVQGSLLKKVLESIKELVNDANFDCSSTGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNLSMGMNLNNMAKMLKCAGNDDIITIKADDGSDTVTFMFESPTQDKISDFEMKLMDIDSEHLGIPEAEYDAIVRMPSAEFARICKDLSSIGDTVVISVTKEGVKFSTKGDIGAANIVCRQNTTVDKPDDATVIEMKEPVSLQFALRYMNSFTKATPLSSTVTISLSNELPVVVEYKIAEMGYVRFYLAPKIEEDDEETKPQV*