Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0008480 | sp|Q9FUD3|BZIP9_ARATH | 50.427 | 234 | 89 | 6 | 112 | 337 | 62 | 276 | 2.53e-59 | 195 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0008480 | TF | bZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008480 | Msa0056930 | 0.806753 | 7.059198e-50 | -8.615850e-47 |
| Msa0008480 | Msa0057010 | 0.895162 | 1.245733e-75 | -8.615850e-47 |
| Msa0008480 | Msa1306270 | 0.908437 | 1.710533e-81 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0008480 | MtrunA17_Chr1g0147491 | 95.870 | 339 | 11 | 2 | 1 | 337 | 1 | 338 | 0.0 | 660 |
| Msa0008480 | MtrunA17_Chr3g0139301 | 63.177 | 277 | 75 | 13 | 71 | 337 | 35 | 294 | 1.58e-97 | 290 |
| Msa0008480 | MtrunA17_Chr1g0190761 | 58.065 | 124 | 48 | 2 | 139 | 258 | 177 | 300 | 7.38e-27 | 109 |
| Msa0008480 | MtrunA17_Chr3g0139571 | 78.378 | 74 | 16 | 0 | 169 | 242 | 1 | 74 | 1.36e-26 | 100 |
| Msa0008480 | MtrunA17_Chr7g0274141 | 52.381 | 147 | 54 | 4 | 117 | 258 | 150 | 285 | 1.24e-25 | 105 |
| Msa0008480 | MtrunA17_Chr1g0155551 | 29.747 | 158 | 96 | 2 | 142 | 299 | 3 | 145 | 7.60e-12 | 62.8 |
| Msa0008480 | MtrunA17_Chr3g0144941 | 41.558 | 77 | 45 | 0 | 167 | 243 | 27 | 103 | 8.77e-12 | 62.4 |
| Msa0008480 | MtrunA17_Chr8g0378901 | 35.294 | 85 | 55 | 0 | 165 | 249 | 30 | 114 | 3.03e-11 | 61.2 |
| Msa0008480 | MtrunA17_Chr8g0341311 | 43.478 | 92 | 47 | 1 | 151 | 242 | 60 | 146 | 4.58e-11 | 61.2 |
| Msa0008480 | MtrunA17_Chr6g0456061 | 40.385 | 104 | 56 | 3 | 155 | 257 | 77 | 175 | 5.25e-11 | 61.2 |
| Msa0008480 | MtrunA17_Chr7g0225661 | 43.478 | 92 | 47 | 1 | 151 | 242 | 70 | 156 | 5.61e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0008480 | AT5G24800.1 | 50.427 | 234 | 89 | 6 | 112 | 337 | 62 | 276 | 2.57e-60 | 195 |
| Msa0008480 | AT5G28770.1 | 58.333 | 108 | 43 | 1 | 154 | 259 | 130 | 237 | 2.39e-24 | 101 |
| Msa0008480 | AT5G28770.2 | 58.333 | 108 | 43 | 1 | 154 | 259 | 137 | 244 | 2.85e-24 | 101 |
| Msa0008480 | AT5G28770.3 | 61.111 | 90 | 35 | 0 | 154 | 243 | 137 | 226 | 2.15e-20 | 89.4 |
| Msa0008480 | AT4G02640.4 | 53.097 | 113 | 51 | 1 | 143 | 253 | 188 | 300 | 1.32e-15 | 77.8 |
| Msa0008480 | AT4G02640.3 | 53.097 | 113 | 51 | 1 | 143 | 253 | 194 | 306 | 1.38e-15 | 77.8 |
| Msa0008480 | AT4G02640.2 | 53.097 | 113 | 51 | 1 | 143 | 253 | 194 | 306 | 1.44e-15 | 77.4 |
| Msa0008480 | AT4G02640.1 | 53.097 | 113 | 51 | 1 | 143 | 253 | 188 | 300 | 1.68e-15 | 77.4 |
| Msa0008480 | AT3G54620.1 | 51.136 | 88 | 43 | 0 | 166 | 253 | 227 | 314 | 4.34e-13 | 70.1 |
| Msa0008480 | AT1G75390.1 | 39.759 | 83 | 50 | 0 | 167 | 249 | 38 | 120 | 9.22e-12 | 63.2 |
| Msa0008480 | AT2G18160.1 | 36.190 | 105 | 57 | 1 | 145 | 249 | 16 | 110 | 1.47e-11 | 62.8 |
| Msa0008480 | AT3G30530.1 | 39.773 | 88 | 53 | 0 | 155 | 242 | 66 | 153 | 6.86e-11 | 60.8 |
Find 88 sgRNAs with CRISPR-Local
Find 302 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTTCTTGGGAGTGAGGTTT+TGG | 0.180329 | 1_1:+12170293 | None:intergenic |
| TGTTCAATTGACTCTGATTT+TGG | 0.206784 | 1_1:+12167827 | None:intergenic |
| AGTATTACCGGTGGCATAAA+TGG | 0.282549 | 1_1:+12170237 | None:intergenic |
| GGCAGAATGGTGCTCCATTT+TGG | 0.285783 | 1_1:+12173050 | None:intergenic |
| GTCATCGAAGCTGGAGAATA+TGG | 0.297219 | 1_1:+12173019 | None:intergenic |
| CATCTGTAAGCTGCTTAAAT+AGG | 0.310185 | 1_1:+12168303 | None:intergenic |
| TTTGGCAGACCTTGAGGTTC+AGG | 0.310946 | 1_1:-12168485 | Msa0008480:intron |
| CCTGCGAAATGGAACCAAAA+TGG | 0.330729 | 1_1:-12173064 | Msa0008480:exon |
| CTAAGACGCTTCATATCAAC+AGG | 0.337570 | 1_1:+12169270 | None:intergenic |
| TGCAGTGATGGTGGAGTTCT+TGG | 0.341951 | 1_1:+12170279 | None:intergenic |
| GCTGCTTCGTGCCTATAAAT+AGG | 0.344163 | 1_1:+12173141 | None:intergenic |
| TGAGCTCTTTGACTAGCTTA+TGG | 0.345147 | 1_1:-12167624 | Msa0008480:CDS |
| GTGATGGTGTATAATGTATA+TGG | 0.354804 | 1_1:-12167373 | Msa0008480:three_prime_UTR |
| AAGAAGAAAACAAGCACATT+TGG | 0.358483 | 1_1:-12168503 | Msa0008480:CDS |
| TGTTGTTGTAGTCACTCCTT+TGG | 0.367802 | 1_1:+12169359 | None:intergenic |
| ACAAACTTGGATATTCTAAC+TGG | 0.384901 | 1_1:+12167565 | None:intergenic |
| GGTGAAGTTAGCAGAGGATA+TGG | 0.388906 | 1_1:-12167890 | Msa0008480:CDS |
| ATTGTTGTTTCGACGGTAAC+GGG | 0.405328 | 1_1:+12172948 | None:intergenic |
| AACTTTATATATATACTTAG+TGG | 0.406476 | 1_1:-12167475 | Msa0008480:three_prime_UTR |
| CAGAATTCAGCTATTGGACT+TGG | 0.407633 | 1_1:-12167703 | Msa0008480:CDS |
| AGTGGACAGAATTCAGCTAT+TGG | 0.421178 | 1_1:-12167709 | Msa0008480:CDS |
| CCAGCTTCGATGACCTCAAA+TGG | 0.421645 | 1_1:-12173010 | Msa0008480:CDS |
| CTGGAGAATATGGAGGTTGC+TGG | 0.422279 | 1_1:+12173029 | None:intergenic |
| TTTCCATGGACGGTGATTGT+AGG | 0.427364 | 1_1:+12167751 | None:intergenic |
| CATGGAAACGACGCTTCATA+TGG | 0.432634 | 1_1:-12167736 | Msa0008480:CDS |
| GTCTATTGACATTGGAATCA+TGG | 0.432876 | 1_1:-12167320 | Msa0008480:three_prime_UTR |
| CAAACAAGAGTATTATTTGT+TGG | 0.433570 | 1_1:+12170319 | None:intergenic |
| CACTAGTAATCTCCGTTGTA+TGG | 0.434010 | 1_1:-12167785 | Msa0008480:CDS |
| GATTGTTGTTTCGACGGTAA+CGG | 0.434855 | 1_1:+12172947 | None:intergenic |
| TGTTAGCATCGCGAAATTGT+TGG | 0.440152 | 1_1:+12168276 | None:intergenic |
| TTGATATGAAGCGTCTTAGA+AGG | 0.440492 | 1_1:-12169266 | Msa0008480:intron |
| CCATTTGAGGTCATCGAAGC+TGG | 0.443299 | 1_1:+12173010 | None:intergenic |
| TTAGGTTGAACAGCTGAGGC+TGG | 0.444559 | 1_1:-12168336 | Msa0008480:intron |
| CATATGAAGCGTCGTTTCCA+TGG | 0.454343 | 1_1:+12167737 | None:intergenic |
| GACGCTTCATATGGTGTTAG+TGG | 0.460901 | 1_1:-12167727 | Msa0008480:CDS |
| ACATCGCCGACACCGATGAA+TGG | 0.462932 | 1_1:+12172891 | None:intergenic |
| ATTCTGCTGTGATCCATTTG+AGG | 0.470171 | 1_1:+12172997 | None:intergenic |
| AGCAGAGGATATGGTCTCTA+GGG | 0.483549 | 1_1:-12167881 | Msa0008480:CDS |
| GCAGTGATGGTGGAGTTCTT+GGG | 0.488823 | 1_1:+12170280 | None:intergenic |
| TGGTGGAGTTCTTGGGAGTG+AGG | 0.489497 | 1_1:+12170287 | None:intergenic |
| AGATTACTAGTGTTGATTTG+TGG | 0.491316 | 1_1:+12167796 | None:intergenic |
| TTAGTGGTGTATGTATCAAA+TGG | 0.494849 | 1_1:-12167459 | Msa0008480:three_prime_UTR |
| ACTGACCAGATTATGAAAAT+CGG | 0.504341 | 1_1:+12172842 | None:intergenic |
| TAGCAGAGGATATGGTCTCT+AGG | 0.512033 | 1_1:-12167882 | Msa0008480:CDS |
| CGATGTAAAACCGTGTAAGA+TGG | 0.513999 | 1_1:-12172916 | Msa0008480:CDS |
| AGAAGCTGGTTGTTAAAAGT+AGG | 0.514450 | 1_1:+12167850 | None:intergenic |
| TGCAGTCATGATTTCAACAA+TGG | 0.523773 | 1_1:-12167664 | Msa0008480:CDS |
| ACTAATTTAGCAAACAATCA+AGG | 0.529332 | 1_1:+12167415 | None:intergenic |
| TGTTGAAGCTTTAAGAGCTA+AGG | 0.529338 | 1_1:-12168228 | Msa0008480:intron |
| TGAAATATGTCTATTGACAT+TGG | 0.529642 | 1_1:-12167328 | Msa0008480:three_prime_UTR |
| AGCTCTTAAAGCTTCAACAT+CGG | 0.530694 | 1_1:+12168232 | None:intergenic |
| GCTTCATCATCTTCATCAGA+TGG | 0.530813 | 1_1:+12169318 | None:intergenic |
| CTCAATAGTTGCAGTGATGG+TGG | 0.531409 | 1_1:+12170270 | None:intergenic |
| ACATGTTGAAAATGAAGTTA+CGG | 0.531605 | 1_1:+12170348 | None:intergenic |
| TTTCTTAGGTTGAACAGCTG+AGG | 0.532387 | 1_1:-12168340 | Msa0008480:intron |
| AAAACAAGCATACACAAACT+TGG | 0.533401 | 1_1:+12167552 | None:intergenic |
| TCGCCTACAATCACCGTCCA+TGG | 0.536280 | 1_1:-12167754 | Msa0008480:CDS |
| GTCGTCGATTGTTGTTTCGA+CGG | 0.537944 | 1_1:+12172941 | None:intergenic |
| CAATCATCCATTTATGCCAC+CGG | 0.538188 | 1_1:-12170244 | Msa0008480:intron |
| TGAAGCGTCGTTTCCATGGA+CGG | 0.541190 | 1_1:+12167741 | None:intergenic |
| TGACATTGGAATCATGGTAA+AGG | 0.549574 | 1_1:-12167314 | Msa0008480:three_prime_UTR |
| AGCATCGCGAAATTGTTGGC+TGG | 0.553901 | 1_1:+12168280 | None:intergenic |
| GGTGTCGGCGATGTTTGCTC+TGG | 0.562967 | 1_1:-12172882 | Msa0008480:CDS |
| CTAGGTTTATTAGCTGACAC+TGG | 0.571493 | 1_1:+12169396 | None:intergenic |
| AGCACATTTGGCAGACCTTG+AGG | 0.572432 | 1_1:-12168491 | Msa0008480:CDS |
| TCTGATGAAGATGATGAAGC+AGG | 0.584800 | 1_1:-12169315 | Msa0008480:CDS |
| GGGTTTGTACTTTGTTCACA+AGG | 0.595616 | 1_1:+12169291 | None:intergenic |
| AATTAATTACCTGAACCTCA+AGG | 0.595756 | 1_1:+12168476 | None:intergenic |
| ATGGATCCATTCATCGGTGT+CGG | 0.602190 | 1_1:-12172897 | Msa0008480:CDS |
| AGACTCAATAGTTGCAGTGA+TGG | 0.603647 | 1_1:+12170267 | None:intergenic |
| AGTAGAGAAAATCAAACCAA+AGG | 0.615439 | 1_1:-12169375 | Msa0008480:CDS |
| TATGGAGGTTGCTGGCAGAA+TGG | 0.618667 | 1_1:+12173037 | None:intergenic |
| GGAGTGACTACAACAACAAG+TGG | 0.619797 | 1_1:-12169354 | Msa0008480:CDS |
| TTACTAGTGTTGATTTGTGG+CGG | 0.621086 | 1_1:+12167799 | None:intergenic |
| TGTAAGATGGATCCATTCAT+CGG | 0.623168 | 1_1:-12172903 | Msa0008480:CDS |
| AACTGGACACTACAATATTG+TGG | 0.637892 | 1_1:+12167582 | None:intergenic |
| GCGAAACATGCGCCATACAA+CGG | 0.641264 | 1_1:+12167773 | None:intergenic |
| AATTTAGGTGAAGTTAGCAG+AGG | 0.643088 | 1_1:-12167896 | Msa0008480:intron |
| ATGTATATGGAACTCATTGG+TGG | 0.643564 | 1_1:-12167360 | Msa0008480:three_prime_UTR |
| ATGAATGGATCCATCTTACA+CGG | 0.644634 | 1_1:+12172906 | None:intergenic |
| ATAATGTATATGGAACTCAT+TGG | 0.648854 | 1_1:-12167363 | Msa0008480:three_prime_UTR |
| TTCATCAGATGGATCACGTG+AGG | 0.658342 | 1_1:+12169329 | None:intergenic |
| GACCAGATTATGAAAATCGG+CGG | 0.666849 | 1_1:+12172845 | None:intergenic |
| CTAATCGCGAGTCTGCCAGA+AGG | 0.671078 | 1_1:-12168531 | Msa0008480:CDS |
| AGTGTTGATTTGTGGCGGAG+TGG | 0.681459 | 1_1:+12167804 | None:intergenic |
| GCAGAGGATATGGTCTCTAG+GGG | 0.691454 | 1_1:-12167880 | Msa0008480:CDS |
| ATCGAAGCTGGAGAATATGG+AGG | 0.698276 | 1_1:+12173022 | None:intergenic |
| TAAGACGCTTCATATCAACA+GGG | 0.724365 | 1_1:+12169271 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAACTAAATTTTACATTTTA+AGG | + | chr1_1:12167880-12167899 | None:intergenic | 10.0% |
| !! | TTATGACAAAATAATAAATT+CGG | - | chr1_1:12168110-12168129 | Msa0008480:intron | 10.0% |
| !!! | CATAATTTTAACATTTTAAT+TGG | + | chr1_1:12170419-12170438 | None:intergenic | 10.0% |
| !! | ATATAATAGTAAATATAAAG+TGG | - | chr1_1:12170518-12170537 | Msa0008480:intron | 10.0% |
| !!! | CACTTTATATTTATTTATTT+TGG | + | chr1_1:12170571-12170590 | None:intergenic | 10.0% |
| !! | CAAAATAAATAAATATAAAG+TGG | - | chr1_1:12170569-12170588 | Msa0008480:intron | 10.0% |
| !! | ACAATATATATAAACTATTA+TGG | + | chr1_1:12170949-12170968 | None:intergenic | 10.0% |
| !!! | AGAAATCATATTATTTTTTT+GGG | - | chr1_1:12171402-12171421 | Msa0008480:intron | 10.0% |
| !! | AAATATAAAATCACATTTAA+AGG | + | chr1_1:12171728-12171747 | None:intergenic | 10.0% |
| !!! | GTTTTTAATTGAATTAATTT+TGG | + | chr1_1:12171834-12171853 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTTGTTACAAA+AGG | + | chr1_1:12172015-12172034 | None:intergenic | 10.0% |
| !!! | TTTATTATATTTTGTTTCTT+AGG | - | chr1_1:12172085-12172104 | Msa0008480:intron | 10.0% |
| !!! | TTAAAATTTTGCCTATTTAT+AGG | - | chr1_1:12167287-12167306 | Msa0008480:three_prime_UTR | 15.0% |
| !! | ATAGAATACATCAATTATAA+AGG | + | chr1_1:12168007-12168026 | None:intergenic | 15.0% |
| !!! | ATTTTTTTTGTCTTTTACTT+TGG | - | chr1_1:12168580-12168599 | Msa0008480:intron | 15.0% |
| !!! | TTTTTTTTGTCTTTTACTTT+GGG | - | chr1_1:12168581-12168600 | Msa0008480:intron | 15.0% |
| !!! | TTAGATACTTTTATTTCAAA+AGG | - | chr1_1:12168864-12168883 | Msa0008480:intron | 15.0% |
| !! | AATTTATAGTAAGATGAATT+AGG | - | chr1_1:12169220-12169239 | Msa0008480:intron | 15.0% |
| !! | GTAAAAAAAATGAATAGAAA+AGG | - | chr1_1:12169386-12169405 | Msa0008480:CDS | 15.0% |
| !!! | TTTTCTATGTTGTTTTATTT+AGG | - | chr1_1:12169639-12169658 | Msa0008480:intron | 15.0% |
| !!! | TTTCTATGTTGTTTTATTTA+GGG | - | chr1_1:12169640-12169659 | Msa0008480:intron | 15.0% |
| !! | AAAAAAAGAAACAATTCATT+AGG | + | chr1_1:12169717-12169736 | None:intergenic | 15.0% |
| !! | TAAGTAATCTTATCTTATAT+TGG | + | chr1_1:12170830-12170849 | None:intergenic | 15.0% |
| !!! | ATTTTATAAATTCTCAATGT+TGG | - | chr1_1:12171237-12171256 | Msa0008480:intron | 15.0% |
| !! | TCTTATAATATATAAACTCA+TGG | + | chr1_1:12171383-12171402 | None:intergenic | 15.0% |
| !!! | GAGAAATCATATTATTTTTT+TGG | - | chr1_1:12171401-12171420 | Msa0008480:intron | 15.0% |
| !!! | GAAATCATATTATTTTTTTG+GGG | - | chr1_1:12171403-12171422 | Msa0008480:intron | 15.0% |
| !!! | AAATCATATTATTTTTTTGG+GGG | - | chr1_1:12171404-12171423 | Msa0008480:intron | 15.0% |
| !! | ATATAATAAAATTCTCATAG+TGG | + | chr1_1:12172075-12172094 | None:intergenic | 15.0% |
| !! | AACTTTATATATATACTTAG+TGG | - | chr1_1:12172964-12172983 | Msa0008480:CDS | 15.0% |
| !! | AAATCATCATTTATTATTGC+TGG | - | chr1_1:12167751-12167770 | Msa0008480:CDS | 20.0% |
| !!! | TACATTTTAAGGTGAATAAT+CGG | + | chr1_1:12167869-12167888 | None:intergenic | 20.0% |
| !!! | ATTATAAAGGTTGATTTGAT+TGG | + | chr1_1:12167994-12168013 | None:intergenic | 20.0% |
| !!! | GTATCACTACAATTTTAATT+TGG | + | chr1_1:12168202-12168221 | None:intergenic | 20.0% |
| !!! | TCAATAATTCATGTTTGTTT+TGG | + | chr1_1:12168237-12168256 | None:intergenic | 20.0% |
| !! | TCTATCTTAATTCTTTGATT+TGG | + | chr1_1:12168304-12168323 | None:intergenic | 20.0% |
| !!! | AGAGTTTTTTTTTATGTGAA+TGG | - | chr1_1:12168331-12168350 | Msa0008480:CDS | 20.0% |
| !!! | TTTTTTATGTGAATGGAATT+TGG | - | chr1_1:12168338-12168357 | Msa0008480:intron | 20.0% |
| !! | ATGGAATTTGGTATATTTAA+AGG | - | chr1_1:12168350-12168369 | Msa0008480:intron | 20.0% |
| !! | TGGAATTTGGTATATTTAAA+GGG | - | chr1_1:12168351-12168370 | Msa0008480:intron | 20.0% |
| !! | TTAACCAAACAACAAAAATA+GGG | + | chr1_1:12169104-12169123 | None:intergenic | 20.0% |
| !! | ATTAACCAAACAACAAAAAT+AGG | + | chr1_1:12169105-12169124 | None:intergenic | 20.0% |
| !! | ATATAATAGAAAAGAAGAGA+GGG | + | chr1_1:12169300-12169319 | None:intergenic | 20.0% |
| !! | AATATAATAGAAAAGAAGAG+AGG | + | chr1_1:12169301-12169320 | None:intergenic | 20.0% |
| !!! | TTTTTAATAGTGTTTGATTG+AGG | + | chr1_1:12169325-12169344 | None:intergenic | 20.0% |
| !!! | TTCTATGTTGTTTTATTTAG+GGG | - | chr1_1:12169641-12169660 | Msa0008480:intron | 20.0% |
| !!! | ATGATTTTTTACCTTCTTTA+AGG | + | chr1_1:12169772-12169791 | None:intergenic | 20.0% |
| !!! | ACATTTTTTCCTGAATTAAT+AGG | + | chr1_1:12169855-12169874 | None:intergenic | 20.0% |
| !!! | TATATAACATAGAGTATTAC+CGG | + | chr1_1:12170217-12170236 | None:intergenic | 20.0% |
| !!! | AGAAATATGTTTCTTTTCTT+TGG | - | chr1_1:12170317-12170336 | Msa0008480:CDS | 20.0% |
| !! | TAAATATAAAGTGGAGTTTA+GGG | - | chr1_1:12170527-12170546 | Msa0008480:intron | 20.0% |
| !!! | ATTTATTTTGGTACAAAAGA+GGG | + | chr1_1:12170559-12170578 | None:intergenic | 20.0% |
| !!! | TATTTATTTTGGTACAAAAG+AGG | + | chr1_1:12170560-12170579 | None:intergenic | 20.0% |
| !! | ACATGGATTTCTTAAATTTA+TGG | + | chr1_1:12170633-12170652 | None:intergenic | 20.0% |
| !!! | AATTGTAGGACTAAATTTTA+AGG | - | chr1_1:12170687-12170706 | Msa0008480:intron | 20.0% |
| !! | ACAATGAAGTTATCTATAAA+GGG | + | chr1_1:12170903-12170922 | None:intergenic | 20.0% |
| !! | TACAATGAAGTTATCTATAA+AGG | + | chr1_1:12170904-12170923 | None:intergenic | 20.0% |
| !!! | ATATATCATAGAGCTTATTT+TGG | - | chr1_1:12170991-12171010 | Msa0008480:intron | 20.0% |
| !!! | TTTTGGATTGAATTGTATAA+TGG | - | chr1_1:12171008-12171027 | Msa0008480:intron | 20.0% |
| !! | TTCAAAAAAATTCTCAATGT+TGG | - | chr1_1:12171264-12171283 | Msa0008480:intron | 20.0% |
| !!! | ATTAAAGAAGAACTTTTACT+AGG | - | chr1_1:12171317-12171336 | Msa0008480:intron | 20.0% |
| !!! | AATCATATTATTTTTTTGGG+GGG | - | chr1_1:12171405-12171424 | Msa0008480:intron | 20.0% |
| !! | AGAGAAATTATAATCTAACA+AGG | - | chr1_1:12171429-12171448 | Msa0008480:intron | 20.0% |
| !!! | TGCATATTTGAATTTACTTT+TGG | - | chr1_1:12171576-12171595 | Msa0008480:intron | 20.0% |
| !!! | TGAAGACTTAAAATTGATTT+TGG | - | chr1_1:12171617-12171636 | Msa0008480:intron | 20.0% |
| !!! | AAATTGATTTTGGTATGTTT+TGG | - | chr1_1:12171627-12171646 | Msa0008480:intron | 20.0% |
| !!! | TTTTGCCAAAAATAATTTGT+TGG | - | chr1_1:12172459-12172478 | Msa0008480:intron | 20.0% |
| !!! | TTTGCCAAAAATAATTTGTT+GGG | - | chr1_1:12172460-12172479 | Msa0008480:intron | 20.0% |
| !!! | AAGAATTTTATGTCCAATTT+AGG | - | chr1_1:12172528-12172547 | Msa0008480:intron | 20.0% |
| ! | GAGAGAAAAGAAAAAGAAAA+GGG | + | chr1_1:12167334-12167353 | None:intergenic | 25.0% |
| ! | AGAGAGAAAAGAAAAAGAAA+AGG | + | chr1_1:12167335-12167354 | None:intergenic | 25.0% |
| ! | TCATTTATTATTGCTGGTAA+TGG | - | chr1_1:12167757-12167776 | Msa0008480:CDS | 25.0% |
| !!! | ACATTTTAAGGTGAATAATC+GGG | + | chr1_1:12167868-12167887 | None:intergenic | 25.0% |
| !!! | ATTAGAGATATTCAAGTTGT+TGG | - | chr1_1:12168064-12168083 | Msa0008480:intron | 25.0% |
| !!! | TGTTTGTTTTGGTAGAATTA+CGG | + | chr1_1:12168226-12168245 | None:intergenic | 25.0% |
| ! | TGCATAATATATGCAAAGTA+CGG | - | chr1_1:12168710-12168729 | Msa0008480:intron | 25.0% |
| !!! | CATGAACATCTTTTTTTTTG+TGG | + | chr1_1:12168753-12168772 | None:intergenic | 25.0% |
| !! | GACTAATACAAGGTTTTTAT+TGG | - | chr1_1:12168889-12168908 | Msa0008480:intron | 25.0% |
| ! | TGAGATTCCTATTTGAATAA+AGG | - | chr1_1:12169066-12169085 | Msa0008480:intron | 25.0% |
| ! | GAGATTCCTATTTGAATAAA+GGG | - | chr1_1:12169067-12169086 | Msa0008480:intron | 25.0% |
| !! | GCTATAATTCATTCTTTTCT+CGG | + | chr1_1:12169274-12169293 | None:intergenic | 25.0% |
| ! | TTACAAGTGACAAATTGAAA+AGG | - | chr1_1:12169356-12169375 | Msa0008480:CDS | 25.0% |
| ! | GACAAATTGAAAAGGAATAT+AGG | - | chr1_1:12169364-12169383 | Msa0008480:CDS | 25.0% |
| ! | AATATAATAGAGCAACAACA+TGG | - | chr1_1:12169409-12169428 | Msa0008480:intron | 25.0% |
| ! | ATATAATAGAGCAACAACAT+GGG | - | chr1_1:12169410-12169429 | Msa0008480:intron | 25.0% |
| !! | GGACATAATTTTCATATAGA+AGG | + | chr1_1:12169448-12169467 | None:intergenic | 25.0% |
| !! | CATATTTGTTAAGAGTCTAT+TGG | + | chr1_1:12169498-12169517 | None:intergenic | 25.0% |
| !!! | TATCTTTACTTTTCATGAAG+TGG | - | chr1_1:12169526-12169545 | Msa0008480:intron | 25.0% |
| ! | CAATAATACTATAACTAGCT+AGG | + | chr1_1:12169553-12169572 | None:intergenic | 25.0% |
| ! | TAGAAAAGCTAAGCTATAAA+AGG | + | chr1_1:12169626-12169645 | None:intergenic | 25.0% |
| !!! | TTTGATTTATACCTTTTGCT+TGG | - | chr1_1:12169678-12169697 | Msa0008480:intron | 25.0% |
| ! | AATAAAGACGTGTAAATGAA+AGG | - | chr1_1:12169741-12169760 | Msa0008480:intron | 25.0% |
| ! | AGGTTGTCAACTTTATTAAT+AGG | + | chr1_1:12169835-12169854 | None:intergenic | 25.0% |
| !! | TTAGAGTAATGTTATTTGTC+TGG | + | chr1_1:12170017-12170036 | None:intergenic | 25.0% |
| ! | ACATGTTGAAAATGAAGTTA+CGG | + | chr1_1:12170094-12170113 | None:intergenic | 25.0% |
| !!! | CAAACAAGAGTATTATTTGT+TGG | + | chr1_1:12170123-12170142 | None:intergenic | 25.0% |
| ! | TTTGCAAGCAAAATTTATAC+TGG | + | chr1_1:12170260-12170279 | None:intergenic | 25.0% |
| ! | GTAAATATAAAGTGGAGTTT+AGG | - | chr1_1:12170526-12170545 | Msa0008480:intron | 25.0% |
| ! | ATAAAGTGGAGTCTTAAAAT+AGG | - | chr1_1:12170583-12170602 | Msa0008480:intron | 25.0% |
| !!! | GGGATTTTTAAGATAATTGT+AGG | - | chr1_1:12170673-12170692 | Msa0008480:intron | 25.0% |
| !! | GGATTTATCTAGTTCAAAAT+AGG | + | chr1_1:12171357-12171376 | None:intergenic | 25.0% |
| ! | TAATATATAAACTCATGGTC+TGG | + | chr1_1:12171378-12171397 | None:intergenic | 25.0% |
| ! | GAAATTATAATCTAACAAGG+TGG | - | chr1_1:12171432-12171451 | Msa0008480:intron | 25.0% |
| ! | ATAACTAGTGATTTCAAAGA+TGG | + | chr1_1:12172039-12172058 | None:intergenic | 25.0% |
| !! | AAAATTCTCATAGTGGAAAT+TGG | + | chr1_1:12172068-12172087 | None:intergenic | 25.0% |
| ! | AAAAATGTTGTGTGACATAT+CGG | - | chr1_1:12172338-12172357 | Msa0008480:intron | 25.0% |
| !!! | GAATTCTTGATTTGTAATCA+CGG | + | chr1_1:12172375-12172394 | None:intergenic | 25.0% |
| !! | TTACATGAATTTGATGATCT+TGG | + | chr1_1:12172419-12172438 | None:intergenic | 25.0% |
| !!! | TTGCCAAAAATAATTTGTTG+GGG | - | chr1_1:12172461-12172480 | Msa0008480:intron | 25.0% |
| !! | TATCCCCAACAAATTATTTT+TGG | + | chr1_1:12172467-12172486 | None:intergenic | 25.0% |
| ! | ACTAATTTAGCAAACAATCA+AGG | + | chr1_1:12173027-12173046 | None:intergenic | 25.0% |
| ! | ATAATGTATATGGAACTCAT+TGG | - | chr1_1:12173076-12173095 | Msa0008480:exon | 25.0% |
| ! | TGAAATATGTCTATTGACAT+TGG | - | chr1_1:12173111-12173130 | Msa0008480:five_prime_UTR | 25.0% |
| ACTGACCAGATTATGAAAAT+CGG | + | chr1_1:12167600-12167619 | None:intergenic | 30.0% | |
| TAATACAACCGTAGTTAGTA+GGG | + | chr1_1:12167702-12167721 | None:intergenic | 30.0% | |
| TTAATACAACCGTAGTTAGT+AGG | + | chr1_1:12167703-12167722 | None:intergenic | 30.0% | |
| TATCAAAGTAGAAACTCCAA+AGG | + | chr1_1:12167788-12167807 | None:intergenic | 30.0% | |
| ATATTTAAAGGGTGAAGCAA+AGG | - | chr1_1:12168362-12168381 | Msa0008480:intron | 30.0% | |
| ! | ACTTTGTTTAGTGATGAAGA+AGG | - | chr1_1:12168411-12168430 | Msa0008480:intron | 30.0% |
| GCATAATATATGCAAAGTAC+GGG | - | chr1_1:12168711-12168730 | Msa0008480:intron | 30.0% | |
| CATAATATATGCAAAGTACG+GGG | - | chr1_1:12168712-12168731 | Msa0008480:intron | 30.0% | |
| !!! | ATCTTTTTTTTTGTGGTGGT+CGG | + | chr1_1:12168746-12168765 | None:intergenic | 30.0% |
| !!! | GAACATCTTTTTTTTTGTGG+TGG | + | chr1_1:12168750-12168769 | None:intergenic | 30.0% |
| AGTCAAACATTAAACATGCA+TGG | - | chr1_1:12168833-12168852 | Msa0008480:intron | 30.0% | |
| TCAAAAGGAAGACTAATACA+AGG | - | chr1_1:12168879-12168898 | Msa0008480:intron | 30.0% | |
| TATAGCGAATAACCATTGTA+TGG | + | chr1_1:12168923-12168942 | None:intergenic | 30.0% | |
| ACTAATTGACAACCAAACTT+TGG | - | chr1_1:12169003-12169022 | Msa0008480:intron | 30.0% | |
| TTCCTATTTGAATAAAGGGA+TGG | - | chr1_1:12169071-12169090 | Msa0008480:intron | 30.0% | |
| TTCCATCCCTTTATTCAAAT+AGG | + | chr1_1:12169076-12169095 | None:intergenic | 30.0% | |
| !!! | GAAACCCTATTTTTGTTGTT+TGG | - | chr1_1:12169097-12169116 | Msa0008480:intron | 30.0% |
| CATGTGATATTGAAGAAACT+TGG | + | chr1_1:12169192-12169211 | None:intergenic | 30.0% | |
| !!! | AGTTTTTTAGGAGAAGCATA+GGG | + | chr1_1:12169249-12169268 | None:intergenic | 30.0% |
| !!! | TAGTTTTTTAGGAGAAGCAT+AGG | + | chr1_1:12169250-12169269 | None:intergenic | 30.0% |
| !!! | CTTTTCTCGGTTAGTTTTTT+AGG | + | chr1_1:12169261-12169280 | None:intergenic | 30.0% |
| ! | ATTTTCATATAGAAGGCCAA+AGG | + | chr1_1:12169441-12169460 | None:intergenic | 30.0% |
| TGAAAATTATGTCCAATGCA+TGG | - | chr1_1:12169454-12169473 | Msa0008480:intron | 30.0% | |
| GAAAGGAATATCCTTAAAGA+AGG | - | chr1_1:12169758-12169777 | Msa0008480:intron | 30.0% | |
| GCTACATCTGAAAATTTGAT+AGG | - | chr1_1:12169792-12169811 | Msa0008480:intron | 30.0% | |
| AGTTGACAACCTATTAATTC+AGG | - | chr1_1:12169843-12169862 | Msa0008480:intron | 30.0% | |
| TCACATAGCTAGAATTTGAT+TGG | - | chr1_1:12169943-12169962 | Msa0008480:intron | 30.0% | |
| ! | GTAACTTCATTTTCAACATG+TGG | - | chr1_1:12170093-12170112 | Msa0008480:intron | 30.0% |
| AATCCATGTAATCATGAAGT+TGG | - | chr1_1:12170644-12170663 | Msa0008480:intron | 30.0% | |
| ! | CTTTTTGTGTTATGATGCAA+TGG | - | chr1_1:12170758-12170777 | Msa0008480:intron | 30.0% |
| TGTAATTATGACTGTTGCAT+TGG | + | chr1_1:12170858-12170877 | None:intergenic | 30.0% | |
| !! | TTGGTTTGATTTTCTCTACT+AGG | + | chr1_1:12171064-12171083 | None:intergenic | 30.0% |
| AGTAGAGAAAATCAAACCAA+AGG | - | chr1_1:12171064-12171083 | Msa0008480:intron | 30.0% | |
| CAAACTATATAACTTCAAGC+TGG | + | chr1_1:12171696-12171715 | None:intergenic | 30.0% | |
| TACACTCTTAATGTGATTTC+AGG | - | chr1_1:12171878-12171897 | Msa0008480:intron | 30.0% | |
| AAGAAGAAAACAAGCACATT+TGG | - | chr1_1:12171936-12171955 | Msa0008480:intron | 30.0% | |
| AATTAATTACCTGAACCTCA+AGG | + | chr1_1:12171966-12171985 | None:intergenic | 30.0% | |
| CAATCTAATCGTAATACACA+TGG | + | chr1_1:12172262-12172281 | None:intergenic | 30.0% | |
| !! | TGTTCAATTGACTCTGATTT+TGG | + | chr1_1:12172615-12172634 | None:intergenic | 30.0% |
| !! | AGATTACTAGTGTTGATTTG+TGG | + | chr1_1:12172646-12172665 | None:intergenic | 30.0% |
| ACAAACTTGGATATTCTAAC+TGG | + | chr1_1:12172877-12172896 | None:intergenic | 30.0% | |
| AAAACAAGCATACACAAACT+TGG | + | chr1_1:12172890-12172909 | None:intergenic | 30.0% | |
| TTAGTGGTGTATGTATCAAA+TGG | - | chr1_1:12172980-12172999 | Msa0008480:CDS | 30.0% | |
| ! | GTGATGGTGTATAATGTATA+TGG | - | chr1_1:12173066-12173085 | Msa0008480:exon | 30.0% |
| AGGAGAGAAAAATGGAAAAG+AGG | + | chr1_1:12167358-12167377 | None:intergenic | 35.0% | |
| ! | TTGATCATGAACTTTTCACG+AGG | - | chr1_1:12167465-12167484 | Msa0008480:three_prime_UTR | 35.0% |
| ATGAATGGATCCATCTTACA+CGG | + | chr1_1:12167536-12167555 | None:intergenic | 35.0% | |
| TGTAAGATGGATCCATTCAT+CGG | - | chr1_1:12167536-12167555 | Msa0008480:three_prime_UTR | 35.0% | |
| AAACGTTTCCCTACTAACTA+CGG | - | chr1_1:12167691-12167710 | Msa0008480:CDS | 35.0% | |
| !! | AGAGATATTCAAGTTGTTGG+AGG | - | chr1_1:12168067-12168086 | Msa0008480:intron | 35.0% |
| !! | GAGATATTCAAGTTGTTGGA+GGG | - | chr1_1:12168068-12168087 | Msa0008480:intron | 35.0% |
| AAGTTCTATCACAAAACCAC+AGG | + | chr1_1:12168274-12168293 | None:intergenic | 35.0% | |
| ACTGAAACATGAACATCTAG+AGG | + | chr1_1:12168651-12168670 | None:intergenic | 35.0% | |
| !!! | TCTTTTTTTTTGTGGTGGTC+GGG | + | chr1_1:12168745-12168764 | None:intergenic | 35.0% |
| CCTTATGCAGACAGAATTTA+TGG | + | chr1_1:12168795-12168814 | None:intergenic | 35.0% | |
| CCATAAATTCTGTCTGCATA+AGG | - | chr1_1:12168792-12168811 | Msa0008480:intron | 35.0% | |
| GCATAAGGTGATTATTTACG+AGG | - | chr1_1:12168807-12168826 | Msa0008480:intron | 35.0% | |
| CGAATAACCATTGTATGGTT+TGG | + | chr1_1:12168918-12168937 | None:intergenic | 35.0% | |
| TCCAATGCATGGTATCTATT+AGG | - | chr1_1:12169465-12169484 | Msa0008480:intron | 35.0% | |
| ACCTAATAGATACCATGCAT+TGG | + | chr1_1:12169469-12169488 | None:intergenic | 35.0% | |
| ATTATTGCCCACAATCTTAG+CGG | - | chr1_1:12169566-12169585 | Msa0008480:intron | 35.0% | |
| ! | GTTTTTGCTTTCCAAGCAAA+AGG | + | chr1_1:12169692-12169711 | None:intergenic | 35.0% |
| ATCATACATGTGATCGTATG+TGG | + | chr1_1:12169924-12169943 | None:intergenic | 35.0% | |
| AAGGGCTGAATTAAGAACAA+TGG | + | chr1_1:12170056-12170075 | None:intergenic | 35.0% | |
| ! | ATAACATAGAGTATTACCGG+TGG | + | chr1_1:12170214-12170233 | None:intergenic | 35.0% |
| !! | TAAAGTGGAGTTTAGGGTTT+TGG | - | chr1_1:12170533-12170552 | Msa0008480:intron | 35.0% |
| TTGCCAACTTCATGATTACA+TGG | + | chr1_1:12170650-12170669 | None:intergenic | 35.0% | |
| TAATCATGAAGTTGGCAAGT+TGG | - | chr1_1:12170652-12170671 | Msa0008480:intron | 35.0% | |
| AATCATGAAGTTGGCAAGTT+GGG | - | chr1_1:12170653-12170672 | Msa0008480:intron | 35.0% | |
| TTGTGTTATGATGCAATGGT+TGG | - | chr1_1:12170762-12170781 | Msa0008480:intron | 35.0% | |
| TGTGTTATGATGCAATGGTT+GGG | - | chr1_1:12170763-12170782 | Msa0008480:intron | 35.0% | |
| ! | ATTATGACTGTTGCATTGGT+GGG | + | chr1_1:12170854-12170873 | None:intergenic | 35.0% |
| AATTATGACTGTTGCATTGG+TGG | + | chr1_1:12170855-12170874 | None:intergenic | 35.0% | |
| TAAGACGCTTCATATCAACA+GGG | + | chr1_1:12171171-12171190 | None:intergenic | 35.0% | |
| ! | TTGATATGAAGCGTCTTAGA+AGG | - | chr1_1:12171173-12171192 | Msa0008480:intron | 35.0% |
| CTATTGTCATCATGTACATG+TGG | + | chr1_1:12171492-12171511 | None:intergenic | 35.0% | |
| GTGTTCAACTTTCACGTTAA+CGG | - | chr1_1:12171755-12171774 | Msa0008480:intron | 35.0% | |
| CTCTTAATGTGATTTCAGGA+AGG | - | chr1_1:12171882-12171901 | Msa0008480:intron | 35.0% | |
| !! | ATGTGCTTGTTTTCTTCTTC+TGG | + | chr1_1:12171935-12171954 | None:intergenic | 35.0% |
| CATCTGTAAGCTGCTTAAAT+AGG | + | chr1_1:12172139-12172158 | None:intergenic | 35.0% | |
| AGCTCTTAAAGCTTCAACAT+CGG | + | chr1_1:12172210-12172229 | None:intergenic | 35.0% | |
| !! | TGTTGAAGCTTTAAGAGCTA+AGG | - | chr1_1:12172211-12172230 | Msa0008480:intron | 35.0% |
| ACATGGAAGAACTTGTAAAG+TGG | + | chr1_1:12172245-12172264 | None:intergenic | 35.0% | |
| TTTGTAATCACGGTATGTGT+TGG | + | chr1_1:12172365-12172384 | None:intergenic | 35.0% | |
| TCTGCTAACTTCACCTAAAT+TGG | + | chr1_1:12172544-12172563 | None:intergenic | 35.0% | |
| AATTTAGGTGAAGTTAGCAG+AGG | - | chr1_1:12172543-12172562 | Msa0008480:intron | 35.0% | |
| AGAAGCTGGTTGTTAAAAGT+AGG | + | chr1_1:12172592-12172611 | None:intergenic | 35.0% | |
| !! | TTACTAGTGTTGATTTGTGG+CGG | + | chr1_1:12172643-12172662 | None:intergenic | 35.0% |
| TGCAGTCATGATTTCAACAA+TGG | - | chr1_1:12172775-12172794 | Msa0008480:intron | 35.0% | |
| AACTGGACACTACAATATTG+TGG | + | chr1_1:12172860-12172879 | None:intergenic | 35.0% | |
| ! | CATCACACTCACTTCATTTT+TGG | + | chr1_1:12173052-12173071 | None:intergenic | 35.0% |
| CAAAAATGAAGTGAGTGTGA+TGG | - | chr1_1:12173050-12173069 | Msa0008480:CDS | 35.0% | |
| ATGTATATGGAACTCATTGG+TGG | - | chr1_1:12173079-12173098 | Msa0008480:five_prime_UTR | 35.0% | |
| GTCTATTGACATTGGAATCA+TGG | - | chr1_1:12173119-12173138 | Msa0008480:five_prime_UTR | 35.0% | |
| TGACATTGGAATCATGGTAA+AGG | - | chr1_1:12173125-12173144 | Msa0008480:five_prime_UTR | 35.0% | |
| CATTTCGCAGGAGAGAAAAA+TGG | + | chr1_1:12167366-12167385 | None:intergenic | 40.0% | |
| ! | CATTTTTCTCTCCTGCGAAA+TGG | - | chr1_1:12167364-12167383 | Msa0008480:three_prime_UTR | 40.0% |
| ATTCTGCTGTGATCCATTTG+AGG | + | chr1_1:12167445-12167464 | None:intergenic | 40.0% | |
| ! | ATCATGAACTTTTCACGAGG+CGG | - | chr1_1:12167468-12167487 | Msa0008480:three_prime_UTR | 40.0% |
| !! | ATTGTTGTTTCGACGGTAAC+GGG | + | chr1_1:12167494-12167513 | None:intergenic | 40.0% |
| !! | GATTGTTGTTTCGACGGTAA+CGG | + | chr1_1:12167495-12167514 | None:intergenic | 40.0% |
| CGATGTAAAACCGTGTAAGA+TGG | - | chr1_1:12167523-12167542 | Msa0008480:three_prime_UTR | 40.0% | |
| GACCAGATTATGAAAATCGG+CGG | + | chr1_1:12167597-12167616 | None:intergenic | 40.0% | |
| AAGCTTGAAAGTCACGTTAG+AGG | + | chr1_1:12167665-12167684 | None:intergenic | 40.0% | |
| !!! | GCTGGTAATGGTTTTTCCTT+TGG | - | chr1_1:12167769-12167788 | Msa0008480:CDS | 40.0% |
| GAAAGCAAACATGAAACCTG+TGG | - | chr1_1:12168255-12168274 | Msa0008480:CDS | 40.0% | |
| TGAAGCAAAGGAACTTGTGA+AGG | - | chr1_1:12168374-12168393 | Msa0008480:intron | 40.0% | |
| ! | TGTGTTGTCTTTTGAACTCG+TGG | - | chr1_1:12168517-12168536 | Msa0008480:CDS | 40.0% |
| ! | GTGTTGTCTTTTGAACTCGT+GGG | - | chr1_1:12168518-12168537 | Msa0008480:CDS | 40.0% |
| !!! | CTTTTTTTTTGTGGTGGTCG+GGG | + | chr1_1:12168744-12168763 | None:intergenic | 40.0% |
| TTGGCTTCCAAACCATACAA+TGG | - | chr1_1:12168908-12168927 | Msa0008480:intron | 40.0% | |
| TGAGAGACATGTCCAAAGTT+TGG | + | chr1_1:12169018-12169037 | None:intergenic | 40.0% | |
| TTATTGCCCACAATCTTAGC+GGG | - | chr1_1:12169567-12169586 | Msa0008480:intron | 40.0% | |
| ATTCAGCCCTTCATAATTGC+AGG | - | chr1_1:12170065-12170084 | Msa0008480:intron | 40.0% | |
| AGACTCAATAGTTGCAGTGA+TGG | + | chr1_1:12170175-12170194 | None:intergenic | 40.0% | |
| CAATCATCCATTTATGCCAC+CGG | - | chr1_1:12170195-12170214 | Msa0008480:intron | 40.0% | |
| AGTATTACCGGTGGCATAAA+TGG | + | chr1_1:12170205-12170224 | None:intergenic | 40.0% | |
| GTGTTATGATGCAATGGTTG+GGG | - | chr1_1:12170764-12170783 | Msa0008480:intron | 40.0% | |
| ! | TTATGACTGTTGCATTGGTG+GGG | + | chr1_1:12170853-12170872 | None:intergenic | 40.0% |
| CTAGGTTTATTAGCTGACAC+TGG | + | chr1_1:12171046-12171065 | None:intergenic | 40.0% | |
| TGTTGTTGTAGTCACTCCTT+TGG | + | chr1_1:12171083-12171102 | None:intergenic | 40.0% | |
| GCTTCATCATCTTCATCAGA+TGG | + | chr1_1:12171124-12171143 | None:intergenic | 40.0% | |
| TCTGATGAAGATGATGAAGC+AGG | - | chr1_1:12171124-12171143 | Msa0008480:intron | 40.0% | |
| GGGTTTGTACTTTGTTCACA+AGG | + | chr1_1:12171151-12171170 | None:intergenic | 40.0% | |
| CTAAGACGCTTCATATCAAC+AGG | + | chr1_1:12171172-12171191 | None:intergenic | 40.0% | |
| ! | TTTTCTTCTTCTGGACCTTC+TGG | + | chr1_1:12171926-12171945 | None:intergenic | 40.0% |
| !! | TTTCTTAGGTTGAACAGCTG+AGG | - | chr1_1:12172099-12172118 | Msa0008480:intron | 40.0% |
| TGTTAGCATCGCGAAATTGT+TGG | + | chr1_1:12172166-12172185 | None:intergenic | 40.0% | |
| !! | CAACATCGGATTTTAGCACT+CGG | + | chr1_1:12172196-12172215 | None:intergenic | 40.0% |
| CACTAGTAATCTCCGTTGTA+TGG | - | chr1_1:12172654-12172673 | Msa0008480:intron | 40.0% | |
| AGTGGACAGAATTCAGCTAT+TGG | - | chr1_1:12172730-12172749 | Msa0008480:intron | 40.0% | |
| CAGAATTCAGCTATTGGACT+TGG | - | chr1_1:12172736-12172755 | Msa0008480:intron | 40.0% | |
| !! | TGAGCTCTTTGACTAGCTTA+TGG | - | chr1_1:12172815-12172834 | Msa0008480:intron | 40.0% |
| GCTGCTTCGTGCCTATAAAT+AGG | + | chr1_1:12167301-12167320 | None:intergenic | 45.0% | |
| !!! | CCATTTTGGTTCCATTTCGC+AGG | + | chr1_1:12167378-12167397 | None:intergenic | 45.0% |
| CCTGCGAAATGGAACCAAAA+TGG | - | chr1_1:12167375-12167394 | Msa0008480:three_prime_UTR | 45.0% | |
| ATCGAAGCTGGAGAATATGG+AGG | + | chr1_1:12167420-12167439 | None:intergenic | 45.0% | |
| GTCATCGAAGCTGGAGAATA+TGG | + | chr1_1:12167423-12167442 | None:intergenic | 45.0% | |
| !! | GTCGTCGATTGTTGTTTCGA+CGG | + | chr1_1:12167501-12167520 | None:intergenic | 45.0% |
| ATGGATCCATTCATCGGTGT+CGG | - | chr1_1:12167542-12167561 | Msa0008480:three_prime_UTR | 45.0% | |
| !!! | CACCGCCGATTTTCATAATC+TGG | - | chr1_1:12167592-12167611 | Msa0008480:three_prime_UTR | 45.0% |
| ! | AAACAAAGTCCCTGATGACG+TGG | + | chr1_1:12168400-12168419 | None:intergenic | 45.0% |
| TGGGAACGCACTACTTTATG+AGG | - | chr1_1:12168537-12168556 | Msa0008480:CDS | 45.0% | |
| TGGACATGTCTCTCAACAGA+AGG | - | chr1_1:12169023-12169042 | Msa0008480:intron | 45.0% | |
| AACAACATGGGTCGTTCCTT+TGG | - | chr1_1:12169422-12169441 | Msa0008480:intron | 45.0% | |
| AACACTCCACCTCTTTCACA+AGG | + | chr1_1:12169594-12169613 | None:intergenic | 45.0% | |
| CGGCATCCTGCAATTATGAA+GGG | + | chr1_1:12170074-12170093 | None:intergenic | 45.0% | |
| ACGGCATCCTGCAATTATGA+AGG | + | chr1_1:12170075-12170094 | None:intergenic | 45.0% | |
| ! | GTTCTTGGGAGTGAGGTTTT+GGG | + | chr1_1:12170148-12170167 | None:intergenic | 45.0% |
| ! | AGTTCTTGGGAGTGAGGTTT+TGG | + | chr1_1:12170149-12170168 | None:intergenic | 45.0% |
| CTCAATAGTTGCAGTGATGG+TGG | + | chr1_1:12170172-12170191 | None:intergenic | 45.0% | |
| GGAGTGACTACAACAACAAG+TGG | - | chr1_1:12171085-12171104 | Msa0008480:intron | 45.0% | |
| TTCATCAGATGGATCACGTG+AGG | + | chr1_1:12171113-12171132 | None:intergenic | 45.0% | |
| GGTGAAGTTAGCAGAGGATA+TGG | - | chr1_1:12172549-12172568 | Msa0008480:intron | 45.0% | |
| TAGCAGAGGATATGGTCTCT+AGG | - | chr1_1:12172557-12172576 | Msa0008480:intron | 45.0% | |
| AGCAGAGGATATGGTCTCTA+GGG | - | chr1_1:12172558-12172577 | Msa0008480:intron | 45.0% | |
| !! | GACTCTGATTTTGGAGAAGC+TGG | + | chr1_1:12172606-12172625 | None:intergenic | 45.0% |
| TTTCCATGGACGGTGATTGT+AGG | + | chr1_1:12172691-12172710 | None:intergenic | 45.0% | |
| !! | CATATGAAGCGTCGTTTCCA+TGG | + | chr1_1:12172705-12172724 | None:intergenic | 45.0% |
| CATGGAAACGACGCTTCATA+TGG | - | chr1_1:12172703-12172722 | Msa0008480:intron | 45.0% | |
| ! | GACGCTTCATATGGTGTTAG+TGG | - | chr1_1:12172712-12172731 | Msa0008480:intron | 45.0% |
| ! | GGCAGAATGGTGCTCCATTT+TGG | + | chr1_1:12167392-12167411 | None:intergenic | 50.0% |
| TATGGAGGTTGCTGGCAGAA+TGG | + | chr1_1:12167405-12167424 | None:intergenic | 50.0% | |
| CTGGAGAATATGGAGGTTGC+TGG | + | chr1_1:12167413-12167432 | None:intergenic | 50.0% | |
| ! | CCATTTGAGGTCATCGAAGC+TGG | + | chr1_1:12167432-12167451 | None:intergenic | 50.0% |
| CCAGCTTCGATGACCTCAAA+TGG | - | chr1_1:12167429-12167448 | Msa0008480:three_prime_UTR | 50.0% | |
| TTGTGAAGGCCACGTCATCA+GGG | - | chr1_1:12168388-12168407 | Msa0008480:intron | 50.0% | |
| ACAACTGAGCTAAGCTCACG+AGG | + | chr1_1:12168681-12168700 | None:intergenic | 50.0% | |
| CAAGGACCCGCTAAGATTGT+GGG | + | chr1_1:12169576-12169595 | None:intergenic | 50.0% | |
| ACAAGGACCCGCTAAGATTG+TGG | + | chr1_1:12169577-12169596 | None:intergenic | 50.0% | |
| ! | TTAGCGGGTCCTTGTGAAAG+AGG | - | chr1_1:12169582-12169601 | Msa0008480:intron | 50.0% |
| !! | GCAGTGATGGTGGAGTTCTT+GGG | + | chr1_1:12170162-12170181 | None:intergenic | 50.0% |
| !! | TGCAGTGATGGTGGAGTTCT+TGG | + | chr1_1:12170163-12170182 | None:intergenic | 50.0% |
| AGCACATTTGGCAGACCTTG+AGG | - | chr1_1:12171948-12171967 | Msa0008480:intron | 50.0% | |
| TTTGGCAGACCTTGAGGTTC+AGG | - | chr1_1:12171954-12171973 | Msa0008480:intron | 50.0% | |
| !! | TTAGGTTGAACAGCTGAGGC+TGG | - | chr1_1:12172103-12172122 | Msa0008480:intron | 50.0% |
| AGCATCGCGAAATTGTTGGC+TGG | + | chr1_1:12172162-12172181 | None:intergenic | 50.0% | |
| GCAGAGGATATGGTCTCTAG+GGG | - | chr1_1:12172559-12172578 | Msa0008480:intron | 50.0% | |
| !! | AGTGTTGATTTGTGGCGGAG+TGG | + | chr1_1:12172638-12172657 | None:intergenic | 50.0% |
| GCGAAACATGCGCCATACAA+CGG | + | chr1_1:12172669-12172688 | None:intergenic | 50.0% | |
| !! | TGAAGCGTCGTTTCCATGGA+CGG | + | chr1_1:12172701-12172720 | None:intergenic | 50.0% |
| ACATCGCCGACACCGATGAA+TGG | + | chr1_1:12167551-12167570 | None:intergenic | 55.0% | |
| CTTGTGAAGGCCACGTCATC+AGG | - | chr1_1:12168387-12168406 | Msa0008480:intron | 55.0% | |
| AGCTAAGCTCACGAGGACTG+AGG | + | chr1_1:12168674-12168693 | None:intergenic | 55.0% | |
| TGGTGGAGTTCTTGGGAGTG+AGG | + | chr1_1:12170155-12170174 | None:intergenic | 55.0% | |
| CTAATCGCGAGTCTGCCAGA+AGG | - | chr1_1:12171908-12171927 | Msa0008480:intron | 55.0% | |
| TCGCCTACAATCACCGTCCA+TGG | - | chr1_1:12172685-12172704 | Msa0008480:intron | 55.0% | |
| !! | GGTGTCGGCGATGTTTGCTC+TGG | - | chr1_1:12167557-12167576 | Msa0008480:three_prime_UTR | 60.0% |
| GCGGGTCCTTGTGAAAGAGG+TGG | - | chr1_1:12169585-12169604 | Msa0008480:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 12167287 | 12173174 | 12167287 | ID=Msa0008480;Name=Msa0008480 |
| chr1_1 | mRNA | 12167287 | 12173174 | 12167287 | ID=Msa0008480-mRNA-1;Parent=Msa0008480;Name=Msa0008480-mRNA-1;_AED=0.12;_eAED=0.12;_QI=96|1|1|1|1|1|6|331|338 |
| chr1_1 | exon | 12167287 | 12167911 | 12167287 | ID=Msa0008480-mRNA-1:exon:4605;Parent=Msa0008480-mRNA-1 |
| chr1_1 | exon | 12168229 | 12168354 | 12168229 | ID=Msa0008480-mRNA-1:exon:4604;Parent=Msa0008480-mRNA-1 |
| chr1_1 | exon | 12168486 | 12168561 | 12168486 | ID=Msa0008480-mRNA-1:exon:4603;Parent=Msa0008480-mRNA-1 |
| chr1_1 | exon | 12169267 | 12169426 | 12169267 | ID=Msa0008480-mRNA-1:exon:4602;Parent=Msa0008480-mRNA-1 |
| chr1_1 | exon | 12170245 | 12170374 | 12170245 | ID=Msa0008480-mRNA-1:exon:4601;Parent=Msa0008480-mRNA-1 |
| chr1_1 | exon | 12172848 | 12173174 | 12172848 | ID=Msa0008480-mRNA-1:exon:4600;Parent=Msa0008480-mRNA-1 |
| chr1_1 | five_prime_UTR | 12173079 | 12173174 | 12173079 | ID=Msa0008480-mRNA-1:five_prime_utr;Parent=Msa0008480-mRNA-1 |
| chr1_1 | CDS | 12172848 | 12173078 | 12172848 | ID=Msa0008480-mRNA-1:cds;Parent=Msa0008480-mRNA-1 |
| chr1_1 | CDS | 12170245 | 12170374 | 12170245 | ID=Msa0008480-mRNA-1:cds;Parent=Msa0008480-mRNA-1 |
| chr1_1 | CDS | 12169267 | 12169426 | 12169267 | ID=Msa0008480-mRNA-1:cds;Parent=Msa0008480-mRNA-1 |
| chr1_1 | CDS | 12168486 | 12168561 | 12168486 | ID=Msa0008480-mRNA-1:cds;Parent=Msa0008480-mRNA-1 |
| chr1_1 | CDS | 12168229 | 12168354 | 12168229 | ID=Msa0008480-mRNA-1:cds;Parent=Msa0008480-mRNA-1 |
| chr1_1 | CDS | 12167618 | 12167911 | 12167618 | ID=Msa0008480-mRNA-1:cds;Parent=Msa0008480-mRNA-1 |
| chr1_1 | three_prime_UTR | 12167287 | 12167617 | 12167287 | ID=Msa0008480-mRNA-1:three_prime_utr;Parent=Msa0008480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
