Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1306270 | sp|Q9FUD3|BZIP9_ARATH | 50.427 | 234 | 89 | 6 | 112 | 337 | 62 | 276 | 2.67e-59 | 195 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1306270 | G7I545 | 96.165 | 339 | 10 | 2 | 1 | 337 | 1 | 338 | 0.0 | 662 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1306270 | TF | bZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008480 | Msa1306270 | 0.908437 | 1.710533e-81 | -8.615850e-47 |
| Msa0056930 | Msa1306270 | 0.824742 | 6.846635e-54 | -8.615850e-47 |
| Msa0057010 | Msa1306270 | 0.972973 | 1.196931e-135 | -8.615850e-47 |
| Msa0422250 | Msa1306270 | 0.803095 | 4.104763e-49 | -8.615850e-47 |
| Msa0343260 | Msa1306270 | 0.807385 | 5.187253e-50 | -8.615850e-47 |
| Msa1143080 | Msa1306270 | 0.806505 | 7.964061e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1306270 | MtrunA17_Chr1g0147491 | 96.165 | 339 | 10 | 2 | 1 | 337 | 1 | 338 | 0.0 | 662 |
| Msa1306270 | MtrunA17_Chr3g0139301 | 63.177 | 277 | 75 | 13 | 71 | 337 | 35 | 294 | 1.56e-97 | 290 |
| Msa1306270 | MtrunA17_Chr1g0190761 | 58.065 | 124 | 48 | 2 | 139 | 258 | 177 | 300 | 6.82e-27 | 109 |
| Msa1306270 | MtrunA17_Chr3g0139571 | 78.378 | 74 | 16 | 0 | 169 | 242 | 1 | 74 | 1.48e-26 | 100 |
| Msa1306270 | MtrunA17_Chr7g0274141 | 52.381 | 147 | 54 | 4 | 117 | 258 | 150 | 285 | 1.24e-25 | 105 |
| Msa1306270 | MtrunA17_Chr1g0155551 | 29.747 | 158 | 96 | 2 | 142 | 299 | 3 | 145 | 7.52e-12 | 62.8 |
| Msa1306270 | MtrunA17_Chr3g0144941 | 41.558 | 77 | 45 | 0 | 167 | 243 | 27 | 103 | 8.77e-12 | 62.4 |
| Msa1306270 | MtrunA17_Chr8g0378901 | 35.294 | 85 | 55 | 0 | 165 | 249 | 30 | 114 | 2.94e-11 | 61.2 |
| Msa1306270 | MtrunA17_Chr8g0341311 | 43.478 | 92 | 47 | 1 | 151 | 242 | 60 | 146 | 4.50e-11 | 61.2 |
| Msa1306270 | MtrunA17_Chr6g0456061 | 40.385 | 104 | 56 | 3 | 155 | 257 | 77 | 175 | 5.46e-11 | 61.2 |
| Msa1306270 | MtrunA17_Chr7g0225661 | 43.478 | 92 | 47 | 1 | 151 | 242 | 70 | 156 | 5.67e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1306270 | AT5G24800.1 | 50.427 | 234 | 89 | 6 | 112 | 337 | 62 | 276 | 2.72e-60 | 195 |
| Msa1306270 | AT5G28770.1 | 58.333 | 108 | 43 | 1 | 154 | 259 | 130 | 237 | 2.32e-24 | 101 |
| Msa1306270 | AT5G28770.2 | 58.333 | 108 | 43 | 1 | 154 | 259 | 137 | 244 | 2.52e-24 | 101 |
| Msa1306270 | AT5G28770.3 | 61.111 | 90 | 35 | 0 | 154 | 243 | 137 | 226 | 2.05e-20 | 89.4 |
| Msa1306270 | AT4G02640.4 | 53.097 | 113 | 51 | 1 | 143 | 253 | 188 | 300 | 1.31e-15 | 77.8 |
| Msa1306270 | AT4G02640.3 | 53.097 | 113 | 51 | 1 | 143 | 253 | 194 | 306 | 1.38e-15 | 77.8 |
| Msa1306270 | AT4G02640.2 | 53.097 | 113 | 51 | 1 | 143 | 253 | 194 | 306 | 1.44e-15 | 77.4 |
| Msa1306270 | AT4G02640.1 | 53.097 | 113 | 51 | 1 | 143 | 253 | 188 | 300 | 1.62e-15 | 77.4 |
| Msa1306270 | AT3G54620.1 | 51.136 | 88 | 43 | 0 | 166 | 253 | 227 | 314 | 4.26e-13 | 70.1 |
| Msa1306270 | AT1G75390.1 | 39.759 | 83 | 50 | 0 | 167 | 249 | 38 | 120 | 9.49e-12 | 63.2 |
| Msa1306270 | AT2G18160.1 | 36.190 | 105 | 57 | 1 | 145 | 249 | 16 | 110 | 1.42e-11 | 62.8 |
| Msa1306270 | AT3G30530.1 | 39.773 | 88 | 53 | 0 | 155 | 242 | 66 | 153 | 6.86e-11 | 60.8 |
Find 91 sgRNAs with CRISPR-Local
Find 303 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTTCTTGGGAGTGAGGTTT+TGG | 0.180329 | 8_4:-1088131 | None:intergenic |
| TGTTCAATTGACTCTGATTT+TGG | 0.206784 | 8_4:-1090592 | None:intergenic |
| AGTATTACCGGTGGCATAAA+TGG | 0.282549 | 8_4:-1088187 | None:intergenic |
| GGCAGAATGGTGCTCCATTT+TGG | 0.285783 | 8_4:-1085362 | None:intergenic |
| GTCATCGAAGCTGGAGAATA+TGG | 0.297219 | 8_4:-1085393 | None:intergenic |
| CATCTGTAAGCTGCTTAAAT+AGG | 0.310185 | 8_4:-1090116 | None:intergenic |
| TTTGGCAGACCTTGAGGTTC+AGG | 0.310946 | 8_4:+1089938 | Msa1306270:CDS |
| CCTGCGAAATGGAACCAAAA+TGG | 0.330729 | 8_4:+1085348 | Msa1306270:exon |
| CTAAGACGCTTCATATCAAC+AGG | 0.337570 | 8_4:-1089153 | None:intergenic |
| TGCAGTGATGGTGGAGTTCT+TGG | 0.341951 | 8_4:-1088145 | None:intergenic |
| GCTGCTTCGTGCCTATAAAT+AGG | 0.344163 | 8_4:-1085271 | None:intergenic |
| ATTGCTGTTTCGACGGTAAC+AGG | 0.344873 | 8_4:-1085464 | None:intergenic |
| TGAGCTCTTTGACTAGCTTA+TGG | 0.345147 | 8_4:+1090795 | Msa1306270:CDS |
| GTGATGGTGTATAATGTATA+TGG | 0.354804 | 8_4:+1091046 | Msa1306270:three_prime_UTR |
| AAGAAGAAAACAAGCACATT+TGG | 0.358483 | 8_4:+1089920 | Msa1306270:CDS |
| AGAGAGAAAAGAAAAGGAAA+AGG | 0.360509 | 8_4:-1085305 | None:intergenic |
| TGTTGTTGTAGTCACTCCTT+TGG | 0.367802 | 8_4:-1089064 | None:intergenic |
| ACAAACTTGGATATTCTAAC+TGG | 0.384901 | 8_4:-1090854 | None:intergenic |
| GGTGAAGTTAGCAGAGGATA+TGG | 0.388906 | 8_4:+1090529 | Msa1306270:intron |
| AACTTTATATATATACTTAG+TGG | 0.406476 | 8_4:+1090944 | Msa1306270:three_prime_UTR |
| CAGAATTCAGCTATTGGACT+TGG | 0.407633 | 8_4:+1090716 | Msa1306270:CDS |
| AGTGGACAGAATTCAGCTAT+TGG | 0.421178 | 8_4:+1090710 | Msa1306270:CDS |
| CCAGCTTCGATGACCTCAAA+TGG | 0.421645 | 8_4:+1085402 | Msa1306270:CDS |
| CTGGAGAATATGGAGGTTGC+TGG | 0.422279 | 8_4:-1085383 | None:intergenic |
| TTTCCATGGACGGTGATTGT+AGG | 0.427364 | 8_4:-1090668 | None:intergenic |
| CATGGAAACGACGCTTCATA+TGG | 0.432634 | 8_4:+1090683 | Msa1306270:CDS |
| GTCTATTGACATTGGAATCA+TGG | 0.432876 | 8_4:+1091099 | Msa1306270:three_prime_UTR |
| CAAACAAGAGTATTATTTGT+TGG | 0.433570 | 8_4:-1088105 | None:intergenic |
| CACTAGTAATCTCCGTTGTA+TGG | 0.434010 | 8_4:+1090634 | Msa1306270:CDS |
| GAGAGAAAAGAAAAGGAAAA+GGG | 0.436301 | 8_4:-1085304 | None:intergenic |
| TGTTAGCATCGCGAAATTGT+TGG | 0.440152 | 8_4:-1090143 | None:intergenic |
| TTGATATGAAGCGTCTTAGA+AGG | 0.440492 | 8_4:+1089157 | Msa1306270:CDS |
| CCATTTGAGGTCATCGAAGC+TGG | 0.443299 | 8_4:-1085402 | None:intergenic |
| TTAGGTTGAACAGCTGAGGC+TGG | 0.444559 | 8_4:+1090083 | Msa1306270:intron |
| CATATGAAGCGTCGTTTCCA+TGG | 0.454343 | 8_4:-1090682 | None:intergenic |
| AAGAGGAGAGAGAAAAGAAA+AGG | 0.459569 | 8_4:-1085311 | None:intergenic |
| GACGCTTCATATGGTGTTAG+TGG | 0.460901 | 8_4:+1090692 | Msa1306270:CDS |
| ACATCGCCGACACCGATGAA+TGG | 0.462932 | 8_4:-1085521 | None:intergenic |
| ATTCTGCTGTGATCCATTTG+AGG | 0.470171 | 8_4:-1085415 | None:intergenic |
| AGCAGAGGATATGGTCTCTA+GGG | 0.483549 | 8_4:+1090538 | Msa1306270:CDS |
| GCAGTGATGGTGGAGTTCTT+GGG | 0.488823 | 8_4:-1088144 | None:intergenic |
| TGGTGGAGTTCTTGGGAGTG+AGG | 0.489497 | 8_4:-1088137 | None:intergenic |
| AGATTACTAGTGTTGATTTG+TGG | 0.491316 | 8_4:-1090623 | None:intergenic |
| TTAGTGGTGTATGTATCAAA+TGG | 0.494849 | 8_4:+1090960 | Msa1306270:three_prime_UTR |
| ACTGACCAGATTATGAAAAT+CGG | 0.504341 | 8_4:-1085570 | None:intergenic |
| TAGCAGAGGATATGGTCTCT+AGG | 0.512033 | 8_4:+1090537 | Msa1306270:CDS |
| CGATGTAAAACCGTGTAAGA+TGG | 0.513999 | 8_4:+1085496 | Msa1306270:CDS |
| AGAAGCTGGTTGTTAAAAGT+AGG | 0.514450 | 8_4:-1090569 | None:intergenic |
| TGCAGTCATGATTTCAACAA+TGG | 0.523773 | 8_4:+1090755 | Msa1306270:CDS |
| ATTATGAAAATCGGCGGTGT+CGG | 0.528802 | 8_4:-1085561 | None:intergenic |
| ACTAATTTAGCAAACAATCA+AGG | 0.529332 | 8_4:-1091004 | None:intergenic |
| TGTTGAAGCTTTAAGAGCTA+AGG | 0.529338 | 8_4:+1090191 | Msa1306270:CDS |
| TGAAATATGTCTATTGACAT+TGG | 0.529642 | 8_4:+1091091 | Msa1306270:three_prime_UTR |
| AGCTCTTAAAGCTTCAACAT+CGG | 0.530694 | 8_4:-1090187 | None:intergenic |
| GCTTCATCATCTTCATCAGA+TGG | 0.530813 | 8_4:-1089105 | None:intergenic |
| CTCAATAGTTGCAGTGATGG+TGG | 0.531409 | 8_4:-1088154 | None:intergenic |
| ACATGTTGAAAATGAAGTTA+CGG | 0.531605 | 8_4:-1088076 | None:intergenic |
| TTTCTTAGGTTGAACAGCTG+AGG | 0.532387 | 8_4:+1090079 | Msa1306270:intron |
| AAAACAAGCATACACAAACT+TGG | 0.533401 | 8_4:-1090867 | None:intergenic |
| TCGCCTACAATCACCGTCCA+TGG | 0.536280 | 8_4:+1090665 | Msa1306270:CDS |
| CAATCATCCATTTATGCCAC+CGG | 0.538188 | 8_4:+1088180 | Msa1306270:CDS |
| TGAAGCGTCGTTTCCATGGA+CGG | 0.541190 | 8_4:-1090678 | None:intergenic |
| TGACATTGGAATCATGGTAA+AGG | 0.549574 | 8_4:+1091105 | Msa1306270:three_prime_UTR |
| AGCATCGCGAAATTGTTGGC+TGG | 0.553901 | 8_4:-1090139 | None:intergenic |
| GTCGTCGATTGCTGTTTCGA+CGG | 0.555171 | 8_4:-1085471 | None:intergenic |
| GGTGTCGGCGATGTTTGCTC+TGG | 0.562967 | 8_4:+1085530 | Msa1306270:CDS |
| CTAGGTTTATTAGCTGACAC+TGG | 0.571493 | 8_4:-1089027 | None:intergenic |
| AGCACATTTGGCAGACCTTG+AGG | 0.572432 | 8_4:+1089932 | Msa1306270:CDS |
| TCTGATGAAGATGATGAAGC+AGG | 0.584800 | 8_4:+1089108 | Msa1306270:CDS |
| GGGTTTGTACTTTGTTCACA+AGG | 0.595616 | 8_4:-1089132 | None:intergenic |
| AATTAATTACCTGAACCTCA+AGG | 0.595756 | 8_4:-1089947 | None:intergenic |
| ATGGATCCATTCATCGGTGT+CGG | 0.602190 | 8_4:+1085515 | Msa1306270:CDS |
| AGACTCAATAGTTGCAGTGA+TGG | 0.603647 | 8_4:-1088157 | None:intergenic |
| AGTAGAGAAAATCAAACCAA+AGG | 0.615439 | 8_4:+1089048 | Msa1306270:CDS |
| TATGGAGGTTGCTGGCAGAA+TGG | 0.618667 | 8_4:-1085375 | None:intergenic |
| GGAGTGACTACAACAACAAG+TGG | 0.619797 | 8_4:+1089069 | Msa1306270:CDS |
| TTACTAGTGTTGATTTGTGG+CGG | 0.621086 | 8_4:-1090620 | None:intergenic |
| TGTAAGATGGATCCATTCAT+CGG | 0.623168 | 8_4:+1085509 | Msa1306270:CDS |
| AACTGGACACTACAATATTG+TGG | 0.637892 | 8_4:-1090837 | None:intergenic |
| GCGAAACATGCGCCATACAA+CGG | 0.641264 | 8_4:-1090646 | None:intergenic |
| AATTTAGGTGAAGTTAGCAG+AGG | 0.643088 | 8_4:+1090523 | Msa1306270:intron |
| ATGTATATGGAACTCATTGG+TGG | 0.643564 | 8_4:+1091059 | Msa1306270:three_prime_UTR |
| ATGAATGGATCCATCTTACA+CGG | 0.644634 | 8_4:-1085506 | None:intergenic |
| ATAATGTATATGGAACTCAT+TGG | 0.648854 | 8_4:+1091056 | Msa1306270:three_prime_UTR |
| TTCATCAGATGGATCACGTG+AGG | 0.658342 | 8_4:-1089094 | None:intergenic |
| GACCAGATTATGAAAATCGG+CGG | 0.666849 | 8_4:-1085567 | None:intergenic |
| CTAATCGCGAGTCTGCCAGA+AGG | 0.671078 | 8_4:+1089892 | Msa1306270:CDS |
| AGTGTTGATTTGTGGCGGAG+TGG | 0.681459 | 8_4:-1090615 | None:intergenic |
| GCAGAGGATATGGTCTCTAG+GGG | 0.691454 | 8_4:+1090539 | Msa1306270:CDS |
| ATCGAAGCTGGAGAATATGG+AGG | 0.698276 | 8_4:-1085390 | None:intergenic |
| TAAGACGCTTCATATCAACA+GGG | 0.724365 | 8_4:-1089152 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTTATGTGAA+TGG | + | chr8_4:1086306-1086325 | Msa1306270:intron | 10.0% |
| !!! | CATAATTTTAACATTTTAAT+TGG | - | chr8_4:1088403-1088422 | None:intergenic | 10.0% |
| !! | ATATAATAGTAAATATAAAG+TGG | + | chr8_4:1088502-1088521 | Msa1306270:intron | 10.0% |
| !!! | CACTTTATATTTATTTATTT+TGG | - | chr8_4:1088555-1088574 | None:intergenic | 10.0% |
| !! | CAAAATAAATAAATATAAAG+TGG | + | chr8_4:1088553-1088572 | Msa1306270:intron | 10.0% |
| !! | ACAATATATATAAACTATTA+TGG | - | chr8_4:1088933-1088952 | None:intergenic | 10.0% |
| !!! | AGAAATCATATTATTTTTTT+GGG | + | chr8_4:1089386-1089405 | Msa1306270:intron | 10.0% |
| !! | AAATATAAAATCACATTTAA+AGG | - | chr8_4:1089712-1089731 | None:intergenic | 10.0% |
| !!! | GTTTTTAATTGAATTAATTT+TGG | - | chr8_4:1089818-1089837 | None:intergenic | 10.0% |
| !!! | TTTATTATATTTTGTTTCTT+AGG | + | chr8_4:1090065-1090084 | Msa1306270:intron | 10.0% |
| !!! | AGACTAAATTTTACATTTTA+AGG | - | chr8_4:1085851-1085870 | None:intergenic | 15.0% |
| !! | ATAGAATACATCAATTATAA+AGG | - | chr8_4:1085978-1085997 | None:intergenic | 15.0% |
| !! | TTATGACAAAATAATAAATC+CGG | + | chr8_4:1086081-1086100 | Msa1306270:intron | 15.0% |
| !!! | ATTTTTTTTGTCTTTTACTT+TGG | + | chr8_4:1086596-1086615 | Msa1306270:intron | 15.0% |
| !!! | TTTTTTTTGTCTTTTACTTT+GGG | + | chr8_4:1086597-1086616 | Msa1306270:intron | 15.0% |
| !!! | TTAGATACTTTTATTTCAAA+AGG | + | chr8_4:1086875-1086894 | Msa1306270:intron | 15.0% |
| !! | AATTTATAGTAAGATGAATT+AGG | + | chr8_4:1087224-1087243 | Msa1306270:intron | 15.0% |
| !! | GTAAAAAAAATGAATAGAAA+AGG | + | chr8_4:1087390-1087409 | Msa1306270:intron | 15.0% |
| !!! | TTTTCTATGTTGTTTTATTT+AGG | + | chr8_4:1087643-1087662 | Msa1306270:intron | 15.0% |
| !!! | TTTCTATGTTGTTTTATTTA+GGG | + | chr8_4:1087644-1087663 | Msa1306270:intron | 15.0% |
| !! | AAAAAAAGAAACAATTCATT+AGG | - | chr8_4:1087721-1087740 | None:intergenic | 15.0% |
| !! | TAAGTAATCTTATCTTATAT+TGG | - | chr8_4:1088814-1088833 | None:intergenic | 15.0% |
| !!! | ATTTTATAAATTCTCAATGT+TGG | + | chr8_4:1089221-1089240 | Msa1306270:intron | 15.0% |
| !! | TCTTATAATATATAAACTCA+TGG | - | chr8_4:1089367-1089386 | None:intergenic | 15.0% |
| !!! | GAGAAATCATATTATTTTTT+TGG | + | chr8_4:1089385-1089404 | Msa1306270:intron | 15.0% |
| !!! | GAAATCATATTATTTTTTTG+GGG | + | chr8_4:1089387-1089406 | Msa1306270:intron | 15.0% |
| !!! | AAATCATATTATTTTTTTGG+GGG | + | chr8_4:1089388-1089407 | Msa1306270:intron | 15.0% |
| !! | ATATAATAAAATTCTCATAG+TGG | - | chr8_4:1090055-1090074 | None:intergenic | 15.0% |
| !! | AACTTTATATATATACTTAG+TGG | + | chr8_4:1090944-1090963 | Msa1306270:three_prime_UTR | 15.0% |
| !!! | TTCAAATTTTGCCTATTTAT+AGG | + | chr8_4:1085260-1085279 | Msa1306270:five_prime_UTR | 20.0% |
| !! | AAATCATCATTTATTATTGC+TGG | + | chr8_4:1085722-1085741 | Msa1306270:intron | 20.0% |
| !!! | TACATTTTAAGGTGAATAAT+CGG | - | chr8_4:1085840-1085859 | None:intergenic | 20.0% |
| !!! | ATTATAAAGGTTGATTTGAT+TGG | - | chr8_4:1085965-1085984 | None:intergenic | 20.0% |
| !!! | GTATCACTACAATTTTAATT+TGG | - | chr8_4:1086173-1086192 | None:intergenic | 20.0% |
| !!! | TCAATAATTCATGTTTGTTT+TGG | - | chr8_4:1086208-1086227 | None:intergenic | 20.0% |
| !! | TCTATCTTAATTCTTTGATT+TGG | - | chr8_4:1086275-1086294 | None:intergenic | 20.0% |
| !!! | TTTTTTATGTGAATGGAATT+TGG | + | chr8_4:1086313-1086332 | Msa1306270:intron | 20.0% |
| !! | ATGGAATTTGGTATATTTAA+AGG | + | chr8_4:1086325-1086344 | Msa1306270:intron | 20.0% |
| !! | TGGAATTTGGTATATTTAAA+GGG | + | chr8_4:1086326-1086345 | Msa1306270:intron | 20.0% |
| !!! | ATAATAACAAAAGAGTATAG+TGG | - | chr8_4:1086423-1086442 | None:intergenic | 20.0% |
| !!! | TGAACATCTTTTTTTTTTTG+TGG | - | chr8_4:1086762-1086781 | None:intergenic | 20.0% |
| !! | TGAGATTTCTATTTGAATAA+AGG | + | chr8_4:1087070-1087089 | Msa1306270:intron | 20.0% |
| !! | GAGATTTCTATTTGAATAAA+GGG | + | chr8_4:1087071-1087090 | Msa1306270:intron | 20.0% |
| !! | TTAACCAAACAACAAAAATA+GGG | - | chr8_4:1087108-1087127 | None:intergenic | 20.0% |
| !! | ATTAACCAAACAACAAAAAT+AGG | - | chr8_4:1087109-1087128 | None:intergenic | 20.0% |
| !! | ATATAATAGAAAAGAAGAGA+GGG | - | chr8_4:1087304-1087323 | None:intergenic | 20.0% |
| !! | AATATAATAGAAAAGAAGAG+AGG | - | chr8_4:1087305-1087324 | None:intergenic | 20.0% |
| !!! | TTTTTAATAGTGTTTGATTG+AGG | - | chr8_4:1087329-1087348 | None:intergenic | 20.0% |
| !!! | TTCTATGTTGTTTTATTTAG+GGG | + | chr8_4:1087645-1087664 | Msa1306270:intron | 20.0% |
| !!! | ATGATTTTTTACCTTCTTTA+AGG | - | chr8_4:1087776-1087795 | None:intergenic | 20.0% |
| !!! | CATTTTTTTCCTGAATTAAT+AGG | - | chr8_4:1087839-1087858 | None:intergenic | 20.0% |
| !!! | TATATAACATAGAGTATTAC+CGG | - | chr8_4:1088202-1088221 | None:intergenic | 20.0% |
| !!! | AGAAATATGTTTCTTTTCTT+TGG | + | chr8_4:1088301-1088320 | Msa1306270:intron | 20.0% |
| !! | TAAATATAAAGTGGAGTTTA+GGG | + | chr8_4:1088511-1088530 | Msa1306270:intron | 20.0% |
| !!! | ATTTATTTTGGTACAAAAGA+GGG | - | chr8_4:1088543-1088562 | None:intergenic | 20.0% |
| !!! | TATTTATTTTGGTACAAAAG+AGG | - | chr8_4:1088544-1088563 | None:intergenic | 20.0% |
| !! | ACATGGATTTCTTAAATTTA+TGG | - | chr8_4:1088617-1088636 | None:intergenic | 20.0% |
| !! | ACAATGAAGTTATCTATAAA+GGG | - | chr8_4:1088887-1088906 | None:intergenic | 20.0% |
| !! | TACAATGAAGTTATCTATAA+AGG | - | chr8_4:1088888-1088907 | None:intergenic | 20.0% |
| !!! | ATATATCATAGAGCTTATTT+TGG | + | chr8_4:1088975-1088994 | Msa1306270:intron | 20.0% |
| !!! | TTTTGGATTGAATTGTATAA+TGG | + | chr8_4:1088992-1089011 | Msa1306270:intron | 20.0% |
| !! | TTCAAAAAAATTCTCAATGT+TGG | + | chr8_4:1089248-1089267 | Msa1306270:intron | 20.0% |
| !!! | ATTAAAGAAGAACTTTTACT+AGG | + | chr8_4:1089301-1089320 | Msa1306270:intron | 20.0% |
| !!! | AATCATATTATTTTTTTGGG+GGG | + | chr8_4:1089389-1089408 | Msa1306270:intron | 20.0% |
| !! | AGAGAAATTATAATCTAACA+AGG | + | chr8_4:1089413-1089432 | Msa1306270:intron | 20.0% |
| !!! | TGCATATTTGAATTTACTTT+TGG | + | chr8_4:1089560-1089579 | Msa1306270:intron | 20.0% |
| !!! | TGAAGACTTAAAATTGATTT+TGG | + | chr8_4:1089601-1089620 | Msa1306270:intron | 20.0% |
| !!! | AAATTGATTTTGGTATGTTT+TGG | + | chr8_4:1089611-1089630 | Msa1306270:intron | 20.0% |
| !!! | TGGATTTTTTTTGTTACAAA+AGG | - | chr8_4:1089999-1090018 | None:intergenic | 20.0% |
| !!! | TTTTGCCAAAAATAATTTGT+TGG | + | chr8_4:1090439-1090458 | Msa1306270:intron | 20.0% |
| !!! | TTTGCCAAAAATAATTTGTT+GGG | + | chr8_4:1090440-1090459 | Msa1306270:intron | 20.0% |
| !!! | AAGAATTTTATGTCCAATTT+AGG | + | chr8_4:1090508-1090527 | Msa1306270:intron | 20.0% |
| ! | TCATTTATTATTGCTGGTAA+TGG | + | chr8_4:1085728-1085747 | Msa1306270:intron | 25.0% |
| !!! | ACATTTTAAGGTGAATAATC+GGG | - | chr8_4:1085839-1085858 | None:intergenic | 25.0% |
| !!! | ATTAGAGATATTCAAGTTGT+TGG | + | chr8_4:1086035-1086054 | Msa1306270:intron | 25.0% |
| !!! | TGTTTGTTTTGGTAGAATTA+CGG | - | chr8_4:1086197-1086216 | None:intergenic | 25.0% |
| !!! | ACATCTTTTTTTTTTTGTGG+TGG | - | chr8_4:1086759-1086778 | None:intergenic | 25.0% |
| !! | GACTAATACAAGGTTTTTAT+TGG | + | chr8_4:1086900-1086919 | Msa1306270:intron | 25.0% |
| ! | TATAATTGACAACCAAACTT+TGG | + | chr8_4:1087007-1087026 | Msa1306270:intron | 25.0% |
| ! | TTTCTATTTGAATAAAGGGA+TGG | + | chr8_4:1087075-1087094 | Msa1306270:intron | 25.0% |
| !!! | CTTTTCTTGGTTAGTTTTTT+AGG | - | chr8_4:1087265-1087284 | None:intergenic | 25.0% |
| !! | GCTATAATTCATTCTTTTCT+TGG | - | chr8_4:1087278-1087297 | None:intergenic | 25.0% |
| ! | TTACAAGTGACAAATTGAAA+AGG | + | chr8_4:1087360-1087379 | Msa1306270:intron | 25.0% |
| ! | GACAAATTGAAAAGGAATAT+AGG | + | chr8_4:1087368-1087387 | Msa1306270:intron | 25.0% |
| ! | AATATAATAGAGCAACAACA+TGG | + | chr8_4:1087413-1087432 | Msa1306270:intron | 25.0% |
| ! | ATATAATAGAGCAACAACAT+GGG | + | chr8_4:1087414-1087433 | Msa1306270:intron | 25.0% |
| !! | GGACATAATTTTCATATAGA+AGG | - | chr8_4:1087452-1087471 | None:intergenic | 25.0% |
| !! | CATATTTGTTAAGAGTCTAT+TGG | - | chr8_4:1087502-1087521 | None:intergenic | 25.0% |
| !!! | TATCTTTACTTTTCATGAAG+TGG | + | chr8_4:1087530-1087549 | Msa1306270:intron | 25.0% |
| ! | CAATAATACTATAACTAGCT+AGG | - | chr8_4:1087557-1087576 | None:intergenic | 25.0% |
| ! | TAGAAAAGCTAAGCTATAAA+AGG | - | chr8_4:1087630-1087649 | None:intergenic | 25.0% |
| !!! | TTTGATTTATACCTTTTGCT+TGG | + | chr8_4:1087682-1087701 | Msa1306270:intron | 25.0% |
| ! | AATAAAGACGTGTAAATGAA+AGG | + | chr8_4:1087745-1087764 | Msa1306270:intron | 25.0% |
| ! | GCTACATATGAAAATTTGAT+AGG | + | chr8_4:1087796-1087815 | Msa1306270:intron | 25.0% |
| !! | TTAGAGTAATGTTATTTGTC+TGG | - | chr8_4:1088002-1088021 | None:intergenic | 25.0% |
| ! | ACATGTTGAAAATGAAGTTA+CGG | - | chr8_4:1088079-1088098 | None:intergenic | 25.0% |
| !!! | CAAACAAGAGTATTATTTGT+TGG | - | chr8_4:1088108-1088127 | None:intergenic | 25.0% |
| ! | TTTGCAAGCAAAATTTATAC+TGG | - | chr8_4:1088245-1088264 | None:intergenic | 25.0% |
| ! | GTAAATATAAAGTGGAGTTT+AGG | + | chr8_4:1088510-1088529 | Msa1306270:intron | 25.0% |
| ! | ATAAAGTGGAGTCTTAAAAT+AGG | + | chr8_4:1088567-1088586 | Msa1306270:intron | 25.0% |
| !!! | GGGATTTTTAAGATAATTGT+AGG | + | chr8_4:1088657-1088676 | Msa1306270:intron | 25.0% |
| !! | GGATTTATCTAGTTCAAAAT+AGG | - | chr8_4:1089341-1089360 | None:intergenic | 25.0% |
| ! | TAATATATAAACTCATGGTC+TGG | - | chr8_4:1089362-1089381 | None:intergenic | 25.0% |
| ! | GAAATTATAATCTAACAAGG+TGG | + | chr8_4:1089416-1089435 | Msa1306270:intron | 25.0% |
| ! | ATAACTAGTGATTTCAAAGA+TGG | - | chr8_4:1090019-1090038 | None:intergenic | 25.0% |
| !! | AAAATTCTCATAGTGGAAAT+TGG | - | chr8_4:1090048-1090067 | None:intergenic | 25.0% |
| ! | AAAAATGTTGTGTGACATAT+CGG | + | chr8_4:1090318-1090337 | Msa1306270:intron | 25.0% |
| !!! | GAATTCTTGATTTGTAATCA+CGG | - | chr8_4:1090355-1090374 | None:intergenic | 25.0% |
| !! | TTACATGAATTTGATGATCT+TGG | - | chr8_4:1090399-1090418 | None:intergenic | 25.0% |
| !!! | TTGCCAAAAATAATTTGTTG+GGG | + | chr8_4:1090441-1090460 | Msa1306270:intron | 25.0% |
| !! | TATCCCCAACAAATTATTTT+TGG | - | chr8_4:1090447-1090466 | None:intergenic | 25.0% |
| ! | ACTAATTTAGCAAACAATCA+AGG | - | chr8_4:1091007-1091026 | None:intergenic | 25.0% |
| ! | ATAATGTATATGGAACTCAT+TGG | + | chr8_4:1091056-1091075 | Msa1306270:three_prime_UTR | 25.0% |
| ! | TGAAATATGTCTATTGACAT+TGG | + | chr8_4:1091091-1091110 | Msa1306270:three_prime_UTR | 25.0% |
| GAGAGAAAAGAAAAGGAAAA+GGG | - | chr8_4:1085307-1085326 | None:intergenic | 30.0% | |
| AGAGAGAAAAGAAAAGGAAA+AGG | - | chr8_4:1085308-1085327 | None:intergenic | 30.0% | |
| ACTGACCAGATTATGAAAAT+CGG | - | chr8_4:1085573-1085592 | None:intergenic | 30.0% | |
| TAATACAACCGTAGTTAGTA+GGG | - | chr8_4:1085673-1085692 | None:intergenic | 30.0% | |
| TTAATACAACCGTAGTTAGT+AGG | - | chr8_4:1085674-1085693 | None:intergenic | 30.0% | |
| TATCAAAGTAGAAACTCCAA+AGG | - | chr8_4:1085759-1085778 | None:intergenic | 30.0% | |
| CTTCAAAGATATACTTCAAC+CGG | - | chr8_4:1086103-1086122 | None:intergenic | 30.0% | |
| ATATTTAAAGGGTGAAGCAA+AGG | + | chr8_4:1086337-1086356 | Msa1306270:intron | 30.0% | |
| ! | ACTTTGTTTAGTGATGAAGA+AGG | + | chr8_4:1086386-1086405 | Msa1306270:intron | 30.0% |
| !!! | TTTTTTTTTTTGTGGTGGTC+GGG | - | chr8_4:1086754-1086773 | None:intergenic | 30.0% |
| !!! | CTTTTTTTTTTTGTGGTGGT+CGG | - | chr8_4:1086755-1086774 | None:intergenic | 30.0% |
| AGTCAAACATTAAACATGCA+TGG | + | chr8_4:1086844-1086863 | Msa1306270:intron | 30.0% | |
| TCAAAAGGAAGACTAATACA+AGG | + | chr8_4:1086890-1086909 | Msa1306270:intron | 30.0% | |
| !! | GAATAACCATTGTATTGGTT+TGG | - | chr8_4:1086929-1086948 | None:intergenic | 30.0% |
| ATAGCGAATAACCATTGTAT+TGG | - | chr8_4:1086934-1086953 | None:intergenic | 30.0% | |
| !!! | GAAACCCTATTTTTGTTGTT+TGG | + | chr8_4:1087101-1087120 | Msa1306270:intron | 30.0% |
| CATGTGATATTGAAGAAACT+TGG | - | chr8_4:1087196-1087215 | None:intergenic | 30.0% | |
| !!! | AGTTTTTTAGGAGAAGCATA+GGG | - | chr8_4:1087253-1087272 | None:intergenic | 30.0% |
| !!! | TAGTTTTTTAGGAGAAGCAT+AGG | - | chr8_4:1087254-1087273 | None:intergenic | 30.0% |
| ! | ATTTTCATATAGAAGGCCAA+AGG | - | chr8_4:1087445-1087464 | None:intergenic | 30.0% |
| TGAAAATTATGTCCAATGCA+TGG | + | chr8_4:1087458-1087477 | Msa1306270:intron | 30.0% | |
| GAAAGGAATATCCTTAAAGA+AGG | + | chr8_4:1087762-1087781 | Msa1306270:intron | 30.0% | |
| AGTTGACAACCTATTAATTC+AGG | + | chr8_4:1087827-1087846 | Msa1306270:intron | 30.0% | |
| TCACATAGCTAGAATTTGAT+TGG | + | chr8_4:1087928-1087947 | Msa1306270:intron | 30.0% | |
| ! | GTAACTTCATTTTCAACATG+TGG | + | chr8_4:1088078-1088097 | Msa1306270:CDS | 30.0% |
| AATCCATGTAATCATGAAGT+TGG | + | chr8_4:1088628-1088647 | Msa1306270:intron | 30.0% | |
| ! | CTTTTTGTGTTATGATGCAA+TGG | + | chr8_4:1088742-1088761 | Msa1306270:intron | 30.0% |
| TGTAATTATGACTGTTGCAT+TGG | - | chr8_4:1088842-1088861 | None:intergenic | 30.0% | |
| !! | TTGGTTTGATTTTCTCTACT+AGG | - | chr8_4:1089048-1089067 | None:intergenic | 30.0% |
| AGTAGAGAAAATCAAACCAA+AGG | + | chr8_4:1089048-1089067 | Msa1306270:CDS | 30.0% | |
| CAAACTATATAACTTCAAGC+TGG | - | chr8_4:1089680-1089699 | None:intergenic | 30.0% | |
| TACACTCTTAATGTGATTTC+AGG | + | chr8_4:1089862-1089881 | Msa1306270:intron | 30.0% | |
| AAGAAGAAAACAAGCACATT+TGG | + | chr8_4:1089920-1089939 | Msa1306270:CDS | 30.0% | |
| AATTAATTACCTGAACCTCA+AGG | - | chr8_4:1089950-1089969 | None:intergenic | 30.0% | |
| !! | TGTTCAATTGACTCTGATTT+TGG | - | chr8_4:1090595-1090614 | None:intergenic | 30.0% |
| !! | AGATTACTAGTGTTGATTTG+TGG | - | chr8_4:1090626-1090645 | None:intergenic | 30.0% |
| ACAAACTTGGATATTCTAAC+TGG | - | chr8_4:1090857-1090876 | None:intergenic | 30.0% | |
| AAAACAAGCATACACAAACT+TGG | - | chr8_4:1090870-1090889 | None:intergenic | 30.0% | |
| TTAGTGGTGTATGTATCAAA+TGG | + | chr8_4:1090960-1090979 | Msa1306270:three_prime_UTR | 30.0% | |
| ! | GTGATGGTGTATAATGTATA+TGG | + | chr8_4:1091046-1091065 | Msa1306270:three_prime_UTR | 30.0% |
| AAGAGGAGAGAGAAAAGAAA+AGG | - | chr8_4:1085314-1085333 | None:intergenic | 35.0% | |
| AGGAGAGAAAAATGGAAAAG+AGG | - | chr8_4:1085331-1085350 | None:intergenic | 35.0% | |
| ! | TTGATCATGAACTTTTCACG+AGG | + | chr8_4:1085438-1085457 | Msa1306270:CDS | 35.0% |
| ATGAATGGATCCATCTTACA+CGG | - | chr8_4:1085509-1085528 | None:intergenic | 35.0% | |
| TGTAAGATGGATCCATTCAT+CGG | + | chr8_4:1085509-1085528 | Msa1306270:CDS | 35.0% | |
| AAACGTTTCCCTACTAACTA+CGG | + | chr8_4:1085662-1085681 | Msa1306270:intron | 35.0% | |
| !! | AGAGATATTCAAGTTGTTGG+AGG | + | chr8_4:1086038-1086057 | Msa1306270:intron | 35.0% |
| AAGTTCTATCACAAAACCAC+AGG | - | chr8_4:1086245-1086264 | None:intergenic | 35.0% | |
| ACTGAAACATGAACATCTAG+AGG | - | chr8_4:1086667-1086686 | None:intergenic | 35.0% | |
| TGCATAGTATATGCAAAGTC+CGG | + | chr8_4:1086719-1086738 | Msa1306270:intron | 35.0% | |
| !!! | TTTTTTTTTTGTGGTGGTCG+GGG | - | chr8_4:1086753-1086772 | None:intergenic | 35.0% |
| CCTTATGCAGAGAGAATTTA+TGG | - | chr8_4:1086806-1086825 | None:intergenic | 35.0% | |
| CCATAAATTCTCTCTGCATA+AGG | + | chr8_4:1086803-1086822 | Msa1306270:intron | 35.0% | |
| GCATAAGGTGATTATTTACG+AGG | + | chr8_4:1086818-1086837 | Msa1306270:intron | 35.0% | |
| ! | ATCAATCTTTTCGCTTCCTT+CGG | - | chr8_4:1087046-1087065 | None:intergenic | 35.0% |
| GATATTGAAGAAACTTGGAG+AGG | - | chr8_4:1087191-1087210 | None:intergenic | 35.0% | |
| TCCAATGCATGGTATCTATT+AGG | + | chr8_4:1087469-1087488 | Msa1306270:intron | 35.0% | |
| ACCTAATAGATACCATGCAT+TGG | - | chr8_4:1087473-1087492 | None:intergenic | 35.0% | |
| ATTATTGCCCACAATCTTAG+CGG | + | chr8_4:1087570-1087589 | Msa1306270:intron | 35.0% | |
| ! | GTTTTTGCTTTCCAAGCAAA+AGG | - | chr8_4:1087696-1087715 | None:intergenic | 35.0% |
| ATCATACATGTGATCGTATG+TGG | - | chr8_4:1087909-1087928 | None:intergenic | 35.0% | |
| AAGGGCTGAATTAAGAACAA+TGG | - | chr8_4:1088041-1088060 | None:intergenic | 35.0% | |
| ! | ATAACATAGAGTATTACCGG+TGG | - | chr8_4:1088199-1088218 | None:intergenic | 35.0% |
| !! | TAAAGTGGAGTTTAGGGTTT+TGG | + | chr8_4:1088517-1088536 | Msa1306270:intron | 35.0% |
| TTGCCAACTTCATGATTACA+TGG | - | chr8_4:1088634-1088653 | None:intergenic | 35.0% | |
| TAATCATGAAGTTGGCAAGT+TGG | + | chr8_4:1088636-1088655 | Msa1306270:intron | 35.0% | |
| AATCATGAAGTTGGCAAGTT+GGG | + | chr8_4:1088637-1088656 | Msa1306270:intron | 35.0% | |
| TTGTGTTATGATGCAATGGT+TGG | + | chr8_4:1088746-1088765 | Msa1306270:intron | 35.0% | |
| TGTGTTATGATGCAATGGTT+GGG | + | chr8_4:1088747-1088766 | Msa1306270:intron | 35.0% | |
| ! | ATTATGACTGTTGCATTGGT+GGG | - | chr8_4:1088838-1088857 | None:intergenic | 35.0% |
| AATTATGACTGTTGCATTGG+TGG | - | chr8_4:1088839-1088858 | None:intergenic | 35.0% | |
| TAAGACGCTTCATATCAACA+GGG | - | chr8_4:1089155-1089174 | None:intergenic | 35.0% | |
| ! | TTGATATGAAGCGTCTTAGA+AGG | + | chr8_4:1089157-1089176 | Msa1306270:CDS | 35.0% |
| CTATTGTCATCATGTACATG+TGG | - | chr8_4:1089476-1089495 | None:intergenic | 35.0% | |
| GTGTTCAACTTTCACGTTAA+CGG | + | chr8_4:1089739-1089758 | Msa1306270:intron | 35.0% | |
| CTCTTAATGTGATTTCAGGA+AGG | + | chr8_4:1089866-1089885 | Msa1306270:intron | 35.0% | |
| !! | ATGTGCTTGTTTTCTTCTTC+TGG | - | chr8_4:1089919-1089938 | None:intergenic | 35.0% |
| CATCTGTAAGCTGCTTAAAT+AGG | - | chr8_4:1090119-1090138 | None:intergenic | 35.0% | |
| AGCTCTTAAAGCTTCAACAT+CGG | - | chr8_4:1090190-1090209 | None:intergenic | 35.0% | |
| !! | TGTTGAAGCTTTAAGAGCTA+AGG | + | chr8_4:1090191-1090210 | Msa1306270:CDS | 35.0% |
| ACATGGAAGAACTTGTAAAG+TGG | - | chr8_4:1090225-1090244 | None:intergenic | 35.0% | |
| TTTGTAATCACGGTATGTGT+TGG | - | chr8_4:1090345-1090364 | None:intergenic | 35.0% | |
| TCTGCTAACTTCACCTAAAT+TGG | - | chr8_4:1090524-1090543 | None:intergenic | 35.0% | |
| AATTTAGGTGAAGTTAGCAG+AGG | + | chr8_4:1090523-1090542 | Msa1306270:intron | 35.0% | |
| AGAAGCTGGTTGTTAAAAGT+AGG | - | chr8_4:1090572-1090591 | None:intergenic | 35.0% | |
| !! | TTACTAGTGTTGATTTGTGG+CGG | - | chr8_4:1090623-1090642 | None:intergenic | 35.0% |
| TGCAGTCATGATTTCAACAA+TGG | + | chr8_4:1090755-1090774 | Msa1306270:CDS | 35.0% | |
| AACTGGACACTACAATATTG+TGG | - | chr8_4:1090840-1090859 | None:intergenic | 35.0% | |
| ! | CATCACACTCACTTCATTTT+TGG | - | chr8_4:1091032-1091051 | None:intergenic | 35.0% |
| CAAAAATGAAGTGAGTGTGA+TGG | + | chr8_4:1091030-1091049 | Msa1306270:three_prime_UTR | 35.0% | |
| ATGTATATGGAACTCATTGG+TGG | + | chr8_4:1091059-1091078 | Msa1306270:three_prime_UTR | 35.0% | |
| GTCTATTGACATTGGAATCA+TGG | + | chr8_4:1091099-1091118 | Msa1306270:three_prime_UTR | 35.0% | |
| TGACATTGGAATCATGGTAA+AGG | + | chr8_4:1091105-1091124 | Msa1306270:three_prime_UTR | 35.0% | |
| CATTTCGCAGGAGAGAAAAA+TGG | - | chr8_4:1085339-1085358 | None:intergenic | 40.0% | |
| ! | CATTTTTCTCTCCTGCGAAA+TGG | + | chr8_4:1085337-1085356 | Msa1306270:exon | 40.0% |
| ATTCTGCTGTGATCCATTTG+AGG | - | chr8_4:1085418-1085437 | None:intergenic | 40.0% | |
| ! | ATCATGAACTTTTCACGAGG+CGG | + | chr8_4:1085441-1085460 | Msa1306270:CDS | 40.0% |
| CGATGTAAAACCGTGTAAGA+TGG | + | chr8_4:1085496-1085515 | Msa1306270:CDS | 40.0% | |
| ATTATGAAAATCGGCGGTGT+CGG | - | chr8_4:1085564-1085583 | None:intergenic | 40.0% | |
| GACCAGATTATGAAAATCGG+CGG | - | chr8_4:1085570-1085589 | None:intergenic | 40.0% | |
| AAGCTTGAAAGTCACGTTAG+AGG | - | chr8_4:1085636-1085655 | None:intergenic | 40.0% | |
| !!! | GCTGGTAATGGTTTTTCCTT+TGG | + | chr8_4:1085740-1085759 | Msa1306270:intron | 40.0% |
| GAAAGCAAACATGAAACCTG+TGG | + | chr8_4:1086226-1086245 | Msa1306270:intron | 40.0% | |
| TGAAGCAAAGGAACTTGTGA+AGG | + | chr8_4:1086349-1086368 | Msa1306270:intron | 40.0% | |
| ! | TGTGTTGTCTTTTGAACTCG+TGG | + | chr8_4:1086533-1086552 | Msa1306270:intron | 40.0% |
| ! | GTGTTGTCTTTTGAACTCGT+GGG | + | chr8_4:1086534-1086553 | Msa1306270:intron | 40.0% |
| GCATAGTATATGCAAAGTCC+GGG | + | chr8_4:1086720-1086739 | Msa1306270:intron | 40.0% | |
| CATAGTATATGCAAAGTCCG+GGG | + | chr8_4:1086721-1086740 | Msa1306270:intron | 40.0% | |
| TGGCTTCCAAACCAATACAA+TGG | + | chr8_4:1086920-1086939 | Msa1306270:intron | 40.0% | |
| TGAGAGACATGTCCAAAGTT+TGG | - | chr8_4:1087022-1087041 | None:intergenic | 40.0% | |
| TTATTGCCCACAATCTTAGC+GGG | + | chr8_4:1087571-1087590 | Msa1306270:intron | 40.0% | |
| ATTCAGCCCTTCATAATTGC+AGG | + | chr8_4:1088050-1088069 | Msa1306270:intron | 40.0% | |
| AGACTCAATAGTTGCAGTGA+TGG | - | chr8_4:1088160-1088179 | None:intergenic | 40.0% | |
| CAATCATCCATTTATGCCAC+CGG | + | chr8_4:1088180-1088199 | Msa1306270:CDS | 40.0% | |
| AGTATTACCGGTGGCATAAA+TGG | - | chr8_4:1088190-1088209 | None:intergenic | 40.0% | |
| GTGTTATGATGCAATGGTTG+GGG | + | chr8_4:1088748-1088767 | Msa1306270:intron | 40.0% | |
| ! | TTATGACTGTTGCATTGGTG+GGG | - | chr8_4:1088837-1088856 | None:intergenic | 40.0% |
| CTAGGTTTATTAGCTGACAC+TGG | - | chr8_4:1089030-1089049 | None:intergenic | 40.0% | |
| TGTTGTTGTAGTCACTCCTT+TGG | - | chr8_4:1089067-1089086 | None:intergenic | 40.0% | |
| GCTTCATCATCTTCATCAGA+TGG | - | chr8_4:1089108-1089127 | None:intergenic | 40.0% | |
| TCTGATGAAGATGATGAAGC+AGG | + | chr8_4:1089108-1089127 | Msa1306270:CDS | 40.0% | |
| GGGTTTGTACTTTGTTCACA+AGG | - | chr8_4:1089135-1089154 | None:intergenic | 40.0% | |
| CTAAGACGCTTCATATCAAC+AGG | - | chr8_4:1089156-1089175 | None:intergenic | 40.0% | |
| ! | TTTTCTTCTTCTGGACCTTC+TGG | - | chr8_4:1089910-1089929 | None:intergenic | 40.0% |
| !! | TTTCTTAGGTTGAACAGCTG+AGG | + | chr8_4:1090079-1090098 | Msa1306270:intron | 40.0% |
| TGTTAGCATCGCGAAATTGT+TGG | - | chr8_4:1090146-1090165 | None:intergenic | 40.0% | |
| !! | CAACATCGGATTTTAGCACT+CGG | - | chr8_4:1090176-1090195 | None:intergenic | 40.0% |
| CACTAGTAATCTCCGTTGTA+TGG | + | chr8_4:1090634-1090653 | Msa1306270:CDS | 40.0% | |
| AGTGGACAGAATTCAGCTAT+TGG | + | chr8_4:1090710-1090729 | Msa1306270:CDS | 40.0% | |
| CAGAATTCAGCTATTGGACT+TGG | + | chr8_4:1090716-1090735 | Msa1306270:CDS | 40.0% | |
| !! | TGAGCTCTTTGACTAGCTTA+TGG | + | chr8_4:1090795-1090814 | Msa1306270:CDS | 40.0% |
| GCTGCTTCGTGCCTATAAAT+AGG | - | chr8_4:1085274-1085293 | None:intergenic | 45.0% | |
| !!! | CCATTTTGGTTCCATTTCGC+AGG | - | chr8_4:1085351-1085370 | None:intergenic | 45.0% |
| CCTGCGAAATGGAACCAAAA+TGG | + | chr8_4:1085348-1085367 | Msa1306270:exon | 45.0% | |
| ATCGAAGCTGGAGAATATGG+AGG | - | chr8_4:1085393-1085412 | None:intergenic | 45.0% | |
| GTCATCGAAGCTGGAGAATA+TGG | - | chr8_4:1085396-1085415 | None:intergenic | 45.0% | |
| !! | ATTGCTGTTTCGACGGTAAC+AGG | - | chr8_4:1085467-1085486 | None:intergenic | 45.0% |
| ATGGATCCATTCATCGGTGT+CGG | + | chr8_4:1085515-1085534 | Msa1306270:CDS | 45.0% | |
| !!! | CACCGCCGATTTTCATAATC+TGG | + | chr8_4:1085565-1085584 | Msa1306270:CDS | 45.0% |
| ! | AAACAAAGTCCCTGATGACG+TGG | - | chr8_4:1086375-1086394 | None:intergenic | 45.0% |
| TGGGAACGCACTACTTTATG+AGG | + | chr8_4:1086553-1086572 | Msa1306270:intron | 45.0% | |
| AACAACATGGGTCGTTCCTT+TGG | + | chr8_4:1087426-1087445 | Msa1306270:intron | 45.0% | |
| CGGCATCCTGCAATTATGAA+GGG | - | chr8_4:1088059-1088078 | None:intergenic | 45.0% | |
| ACGGCATCCTGCAATTATGA+AGG | - | chr8_4:1088060-1088079 | None:intergenic | 45.0% | |
| ! | GTTCTTGGGAGTGAGGTTTT+GGG | - | chr8_4:1088133-1088152 | None:intergenic | 45.0% |
| ! | AGTTCTTGGGAGTGAGGTTT+TGG | - | chr8_4:1088134-1088153 | None:intergenic | 45.0% |
| CTCAATAGTTGCAGTGATGG+TGG | - | chr8_4:1088157-1088176 | None:intergenic | 45.0% | |
| GGAGTGACTACAACAACAAG+TGG | + | chr8_4:1089069-1089088 | Msa1306270:CDS | 45.0% | |
| TTCATCAGATGGATCACGTG+AGG | - | chr8_4:1089097-1089116 | None:intergenic | 45.0% | |
| GGTGAAGTTAGCAGAGGATA+TGG | + | chr8_4:1090529-1090548 | Msa1306270:intron | 45.0% | |
| TAGCAGAGGATATGGTCTCT+AGG | + | chr8_4:1090537-1090556 | Msa1306270:CDS | 45.0% | |
| AGCAGAGGATATGGTCTCTA+GGG | + | chr8_4:1090538-1090557 | Msa1306270:CDS | 45.0% | |
| !! | GACTCTGATTTTGGAGAAGC+TGG | - | chr8_4:1090586-1090605 | None:intergenic | 45.0% |
| TTTCCATGGACGGTGATTGT+AGG | - | chr8_4:1090671-1090690 | None:intergenic | 45.0% | |
| !! | CATATGAAGCGTCGTTTCCA+TGG | - | chr8_4:1090685-1090704 | None:intergenic | 45.0% |
| CATGGAAACGACGCTTCATA+TGG | + | chr8_4:1090683-1090702 | Msa1306270:CDS | 45.0% | |
| ! | GACGCTTCATATGGTGTTAG+TGG | + | chr8_4:1090692-1090711 | Msa1306270:CDS | 45.0% |
| ! | GGCAGAATGGTGCTCCATTT+TGG | - | chr8_4:1085365-1085384 | None:intergenic | 50.0% |
| TATGGAGGTTGCTGGCAGAA+TGG | - | chr8_4:1085378-1085397 | None:intergenic | 50.0% | |
| CTGGAGAATATGGAGGTTGC+TGG | - | chr8_4:1085386-1085405 | None:intergenic | 50.0% | |
| ! | CCATTTGAGGTCATCGAAGC+TGG | - | chr8_4:1085405-1085424 | None:intergenic | 50.0% |
| CCAGCTTCGATGACCTCAAA+TGG | + | chr8_4:1085402-1085421 | Msa1306270:CDS | 50.0% | |
| !! | GTCGTCGATTGCTGTTTCGA+CGG | - | chr8_4:1085474-1085493 | None:intergenic | 50.0% |
| TTGTGAAGGCCACGTCATCA+GGG | + | chr8_4:1086363-1086382 | Msa1306270:intron | 50.0% | |
| TGGACATGTCTCTCAACCGA+AGG | + | chr8_4:1087027-1087046 | Msa1306270:intron | 50.0% | |
| CAAGGACCCGCTAAGATTGT+GGG | - | chr8_4:1087580-1087599 | None:intergenic | 50.0% | |
| ! | CACAATCTTAGCGGGTCCTT+GGG | + | chr8_4:1087579-1087598 | Msa1306270:intron | 50.0% |
| AACACTCCACCTCTTTCCCA+AGG | - | chr8_4:1087598-1087617 | None:intergenic | 50.0% | |
| !! | GCAGTGATGGTGGAGTTCTT+GGG | - | chr8_4:1088147-1088166 | None:intergenic | 50.0% |
| !! | TGCAGTGATGGTGGAGTTCT+TGG | - | chr8_4:1088148-1088167 | None:intergenic | 50.0% |
| AGCACATTTGGCAGACCTTG+AGG | + | chr8_4:1089932-1089951 | Msa1306270:CDS | 50.0% | |
| TTTGGCAGACCTTGAGGTTC+AGG | + | chr8_4:1089938-1089957 | Msa1306270:CDS | 50.0% | |
| !! | TTAGGTTGAACAGCTGAGGC+TGG | + | chr8_4:1090083-1090102 | Msa1306270:intron | 50.0% |
| AGCATCGCGAAATTGTTGGC+TGG | - | chr8_4:1090142-1090161 | None:intergenic | 50.0% | |
| GCAGAGGATATGGTCTCTAG+GGG | + | chr8_4:1090539-1090558 | Msa1306270:CDS | 50.0% | |
| !! | AGTGTTGATTTGTGGCGGAG+TGG | - | chr8_4:1090618-1090637 | None:intergenic | 50.0% |
| GCGAAACATGCGCCATACAA+CGG | - | chr8_4:1090649-1090668 | None:intergenic | 50.0% | |
| !! | TGAAGCGTCGTTTCCATGGA+CGG | - | chr8_4:1090681-1090700 | None:intergenic | 50.0% |
| ACATCGCCGACACCGATGAA+TGG | - | chr8_4:1085524-1085543 | None:intergenic | 55.0% | |
| CTTGTGAAGGCCACGTCATC+AGG | + | chr8_4:1086362-1086381 | Msa1306270:intron | 55.0% | |
| CCAAGGACCCGCTAAGATTG+TGG | - | chr8_4:1087581-1087600 | None:intergenic | 55.0% | |
| ! | CCACAATCTTAGCGGGTCCT+TGG | + | chr8_4:1087578-1087597 | Msa1306270:intron | 55.0% |
| ! | TTAGCGGGTCCTTGGGAAAG+AGG | + | chr8_4:1087586-1087605 | Msa1306270:intron | 55.0% |
| TGGTGGAGTTCTTGGGAGTG+AGG | - | chr8_4:1088140-1088159 | None:intergenic | 55.0% | |
| CTAATCGCGAGTCTGCCAGA+AGG | + | chr8_4:1089892-1089911 | Msa1306270:CDS | 55.0% | |
| TCGCCTACAATCACCGTCCA+TGG | + | chr8_4:1090665-1090684 | Msa1306270:CDS | 55.0% | |
| !! | GGTGTCGGCGATGTTTGCTC+TGG | + | chr8_4:1085530-1085549 | Msa1306270:CDS | 60.0% |
| GGTGGTCGGGGTTTGAACCC+CGG | - | chr8_4:1086741-1086760 | None:intergenic | 65.0% | |
| GCGGGTCCTTGGGAAAGAGG+TGG | + | chr8_4:1087589-1087608 | Msa1306270:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 1085260 | 1091154 | 1085260 | ID=Msa1306270;Name=Msa1306270 |
| chr8_4 | mRNA | 1085260 | 1091154 | 1085260 | ID=Msa1306270-mRNA-1;Parent=Msa1306270;Name=Msa1306270-mRNA-1;_AED=0.11;_eAED=0.11;_QI=96|1|1|1|1|1|6|331|338 |
| chr8_4 | exon | 1085260 | 1085586 | 1085260 | ID=Msa1306270-mRNA-1:exon:200;Parent=Msa1306270-mRNA-1 |
| chr8_4 | exon | 1088072 | 1088201 | 1088072 | ID=Msa1306270-mRNA-1:exon:201;Parent=Msa1306270-mRNA-1 |
| chr8_4 | exon | 1089019 | 1089178 | 1089019 | ID=Msa1306270-mRNA-1:exon:202;Parent=Msa1306270-mRNA-1 |
| chr8_4 | exon | 1089884 | 1089959 | 1089884 | ID=Msa1306270-mRNA-1:exon:203;Parent=Msa1306270-mRNA-1 |
| chr8_4 | exon | 1090087 | 1090212 | 1090087 | ID=Msa1306270-mRNA-1:exon:204;Parent=Msa1306270-mRNA-1 |
| chr8_4 | exon | 1090530 | 1091154 | 1090530 | ID=Msa1306270-mRNA-1:exon:205;Parent=Msa1306270-mRNA-1 |
| chr8_4 | five_prime_UTR | 1085260 | 1085355 | 1085260 | ID=Msa1306270-mRNA-1:five_prime_utr;Parent=Msa1306270-mRNA-1 |
| chr8_4 | CDS | 1085356 | 1085586 | 1085356 | ID=Msa1306270-mRNA-1:cds;Parent=Msa1306270-mRNA-1 |
| chr8_4 | CDS | 1088072 | 1088201 | 1088072 | ID=Msa1306270-mRNA-1:cds;Parent=Msa1306270-mRNA-1 |
| chr8_4 | CDS | 1089019 | 1089178 | 1089019 | ID=Msa1306270-mRNA-1:cds;Parent=Msa1306270-mRNA-1 |
| chr8_4 | CDS | 1089884 | 1089959 | 1089884 | ID=Msa1306270-mRNA-1:cds;Parent=Msa1306270-mRNA-1 |
| chr8_4 | CDS | 1090087 | 1090212 | 1090087 | ID=Msa1306270-mRNA-1:cds;Parent=Msa1306270-mRNA-1 |
| chr8_4 | CDS | 1090530 | 1090823 | 1090530 | ID=Msa1306270-mRNA-1:cds;Parent=Msa1306270-mRNA-1 |
| chr8_4 | three_prime_UTR | 1090824 | 1091154 | 1090824 | ID=Msa1306270-mRNA-1:three_prime_utr;Parent=Msa1306270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
