Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0056930 | XP_003588595.1 | 96.165 | 339 | 10 | 2 | 1 | 337 | 1 | 338 | 0.0 | 664 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0056930 | sp|Q9FUD3|BZIP9_ARATH | 50.427 | 234 | 89 | 6 | 112 | 337 | 62 | 276 | 2.02e-59 | 195 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0056930 | G7I545 | 96.165 | 339 | 10 | 2 | 1 | 337 | 1 | 338 | 0.0 | 664 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0056930 | TF | bZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008480 | Msa0056930 | 0.806753 | 7.059198e-50 | -8.615850e-47 |
| Msa0056930 | Msa0057010 | 0.908538 | 1.532088e-81 | -8.615850e-47 |
| Msa0056930 | Msa0205440 | 0.815749 | 7.881825e-52 | -8.615850e-47 |
| Msa0056930 | Msa1112180 | 0.802293 | 6.009547e-49 | -8.615850e-47 |
| Msa0056930 | Msa1207790 | 0.818662 | 1.743663e-52 | -8.615850e-47 |
| Msa0056930 | Msa1207800 | 0.831968 | 1.235281e-55 | -8.615850e-47 |
| Msa0056930 | Msa1306270 | 0.824742 | 6.846635e-54 | -8.615850e-47 |
| Msa0056930 | Msa1329130 | 0.828952 | 6.753279e-55 | -8.615850e-47 |
| Msa0056930 | Msa1329210 | 0.826810 | 2.211927e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0056930 | MtrunA17_Chr1g0147491 | 96.165 | 339 | 10 | 2 | 1 | 337 | 1 | 338 | 0.0 | 664 |
| Msa0056930 | MtrunA17_Chr3g0139301 | 62.816 | 277 | 76 | 13 | 71 | 337 | 35 | 294 | 3.80e-96 | 287 |
| Msa0056930 | MtrunA17_Chr1g0190761 | 58.065 | 124 | 48 | 2 | 139 | 258 | 177 | 300 | 6.49e-27 | 109 |
| Msa0056930 | MtrunA17_Chr3g0139571 | 78.378 | 74 | 16 | 0 | 169 | 242 | 1 | 74 | 1.53e-26 | 100 |
| Msa0056930 | MtrunA17_Chr7g0274141 | 52.381 | 147 | 54 | 4 | 117 | 258 | 150 | 285 | 9.85e-26 | 106 |
| Msa0056930 | MtrunA17_Chr1g0155551 | 29.747 | 158 | 96 | 2 | 142 | 299 | 3 | 145 | 8.05e-12 | 62.8 |
| Msa0056930 | MtrunA17_Chr3g0144941 | 41.558 | 77 | 45 | 0 | 167 | 243 | 27 | 103 | 8.85e-12 | 62.4 |
| Msa0056930 | MtrunA17_Chr8g0378901 | 35.294 | 85 | 55 | 0 | 165 | 249 | 30 | 114 | 3.24e-11 | 61.2 |
| Msa0056930 | MtrunA17_Chr8g0341311 | 43.478 | 92 | 47 | 1 | 151 | 242 | 60 | 146 | 4.63e-11 | 61.2 |
| Msa0056930 | MtrunA17_Chr6g0456061 | 40.385 | 104 | 56 | 3 | 155 | 257 | 77 | 175 | 5.20e-11 | 61.2 |
| Msa0056930 | MtrunA17_Chr7g0225661 | 43.478 | 92 | 47 | 1 | 151 | 242 | 70 | 156 | 5.95e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0056930 | AT5G24800.1 | 50.427 | 234 | 89 | 6 | 112 | 337 | 62 | 276 | 2.05e-60 | 195 |
| Msa0056930 | AT5G28770.1 | 58.333 | 108 | 43 | 1 | 154 | 259 | 130 | 237 | 2.12e-24 | 101 |
| Msa0056930 | AT5G28770.2 | 58.333 | 108 | 43 | 1 | 154 | 259 | 137 | 244 | 2.35e-24 | 101 |
| Msa0056930 | AT5G28770.3 | 61.111 | 90 | 35 | 0 | 154 | 243 | 137 | 226 | 1.97e-20 | 89.4 |
| Msa0056930 | AT4G02640.4 | 53.097 | 113 | 51 | 1 | 143 | 253 | 188 | 300 | 1.25e-15 | 77.8 |
| Msa0056930 | AT4G02640.3 | 53.097 | 113 | 51 | 1 | 143 | 253 | 194 | 306 | 1.26e-15 | 77.8 |
| Msa0056930 | AT4G02640.2 | 53.097 | 113 | 51 | 1 | 143 | 253 | 194 | 306 | 1.36e-15 | 77.8 |
| Msa0056930 | AT4G02640.1 | 53.097 | 113 | 51 | 1 | 143 | 253 | 188 | 300 | 1.51e-15 | 77.4 |
| Msa0056930 | AT3G54620.1 | 51.136 | 88 | 43 | 0 | 166 | 253 | 227 | 314 | 4.34e-13 | 70.1 |
| Msa0056930 | AT1G75390.1 | 39.759 | 83 | 50 | 0 | 167 | 249 | 38 | 120 | 8.95e-12 | 63.5 |
| Msa0056930 | AT2G18160.1 | 36.190 | 105 | 57 | 1 | 145 | 249 | 16 | 110 | 1.53e-11 | 62.8 |
| Msa0056930 | AT3G30530.1 | 39.773 | 88 | 53 | 0 | 155 | 242 | 66 | 153 | 6.86e-11 | 60.8 |
Find 89 sgRNAs with CRISPR-Local
Find 327 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTTCTTGGGAGTGAGGTTT+TGG | 0.180329 | 1_2:-12704973 | None:intergenic |
| TGTTCAATTGACTCTGATTT+TGG | 0.206784 | 1_2:-12707915 | None:intergenic |
| GGCAGAATGGTGCTCCATTT+TGG | 0.285783 | 1_2:-12702255 | None:intergenic |
| GTCATCGAAGCTGGAGAATA+TGG | 0.297219 | 1_2:-12702286 | None:intergenic |
| CATCTGTAAGCTGCTTAAAT+AGG | 0.310185 | 1_2:-12707439 | None:intergenic |
| TTTGGCAGACCTTGAGGTTC+AGG | 0.310946 | 1_2:+12707258 | Msa0056930:CDS |
| CCTGCGAAATGGAACCAAAA+TGG | 0.330729 | 1_2:+12702241 | Msa0056930:exon |
| GATTGCTGTTTCGACGGTAA+TGG | 0.335006 | 1_2:-12702358 | None:intergenic |
| CTAAGACGCTTCATATCAAC+AGG | 0.337570 | 1_2:-12705979 | None:intergenic |
| TGCAGTGATGGTGGAGTTCT+TGG | 0.341951 | 1_2:-12704987 | None:intergenic |
| GCTGCTTCGTGCCTATAAAT+AGG | 0.344163 | 1_2:-12702164 | None:intergenic |
| TGAGCTCTTTGACTAGCTTA+TGG | 0.345147 | 1_2:+12708118 | Msa0056930:CDS |
| ATTGCTGTTTCGACGGTAAT+GGG | 0.350344 | 1_2:-12702357 | None:intergenic |
| GTGATGGTGTATAATGTATA+TGG | 0.354804 | 1_2:+12708354 | Msa0056930:three_prime_UTR |
| AAGAAGAAAACAAGCACATT+TGG | 0.358483 | 1_2:+12707240 | Msa0056930:CDS |
| TGTTGTTGTAGTCACTCCTT+TGG | 0.367802 | 1_2:-12705890 | None:intergenic |
| ACAAACTTGGATATTCTAAC+TGG | 0.384901 | 1_2:-12708177 | None:intergenic |
| GGTGAAGTTAGCAGAGGATA+TGG | 0.388906 | 1_2:+12707852 | Msa0056930:intron |
| AGTATTACCGGTGGCAGAAA+TGG | 0.392731 | 1_2:-12705029 | None:intergenic |
| AACTTTATATATATACTTAG+TGG | 0.406476 | 1_2:+12708267 | Msa0056930:three_prime_UTR |
| CAGAATTCAGCTATTGGACT+TGG | 0.407633 | 1_2:+12708039 | Msa0056930:CDS |
| CAAACAAGAGTATTATTTGT+TGG | 0.419490 | 1_2:-12704947 | None:intergenic |
| AGTGGACAGAATTCAGCTAT+TGG | 0.421178 | 1_2:+12708033 | Msa0056930:CDS |
| CCAGCTTCGATGACCTCAAA+TGG | 0.421645 | 1_2:+12702295 | Msa0056930:CDS |
| CTGGAGAATATGGAGGTTGC+TGG | 0.422279 | 1_2:-12702276 | None:intergenic |
| TTTCCATGGACGGTGATTGT+AGG | 0.427364 | 1_2:-12707991 | None:intergenic |
| CATGGAAACGACGCTTCATA+TGG | 0.432634 | 1_2:+12708006 | Msa0056930:CDS |
| GTCTATTGACATTGGAATCA+TGG | 0.432876 | 1_2:+12708407 | Msa0056930:three_prime_UTR |
| CACTAGTAATCTCCGTTGTA+TGG | 0.434010 | 1_2:+12707957 | Msa0056930:CDS |
| TGTTAGCATCGCGAAATTGT+TGG | 0.440152 | 1_2:-12707466 | None:intergenic |
| TTGATATGAAGCGTCTTAGA+AGG | 0.440492 | 1_2:+12705983 | Msa0056930:CDS |
| CCATTTGAGGTCATCGAAGC+TGG | 0.443299 | 1_2:-12702295 | None:intergenic |
| TTAGGTTGAACAGCTGAGGC+TGG | 0.444559 | 1_2:+12707406 | Msa0056930:intron |
| CATATGAAGCGTCGTTTCCA+TGG | 0.454343 | 1_2:-12708005 | None:intergenic |
| GACGCTTCATATGGTGTTAG+TGG | 0.460901 | 1_2:+12708015 | Msa0056930:CDS |
| ACATCGCCGACACCGATGAA+TGG | 0.462932 | 1_2:-12702414 | None:intergenic |
| ATTCTGCTGTGATCCATTTG+AGG | 0.470171 | 1_2:-12702308 | None:intergenic |
| AGCAGAGGATATGGTCTCTA+GGG | 0.483549 | 1_2:+12707861 | Msa0056930:CDS |
| GCAGTGATGGTGGAGTTCTT+GGG | 0.488823 | 1_2:-12704986 | None:intergenic |
| TGGTGGAGTTCTTGGGAGTG+AGG | 0.489497 | 1_2:-12704979 | None:intergenic |
| AGATTACTAGTGTTGATTTG+TGG | 0.491316 | 1_2:-12707946 | None:intergenic |
| TTAGTGGTGTATGTATCAAA+TGG | 0.494849 | 1_2:+12708283 | Msa0056930:three_prime_UTR |
| ACTGACCAGATTATGAAAAT+CGG | 0.504341 | 1_2:-12702463 | None:intergenic |
| TAGCAGAGGATATGGTCTCT+AGG | 0.512033 | 1_2:+12707860 | Msa0056930:CDS |
| CGATGTAAAACCGTGTAAGA+TGG | 0.513999 | 1_2:+12702389 | Msa0056930:CDS |
| AGAAGCTGGTTGTTAAAAGT+AGG | 0.514450 | 1_2:-12707892 | None:intergenic |
| TGCAGTCATGATTTCAACAA+TGG | 0.523773 | 1_2:+12708078 | Msa0056930:CDS |
| ATTATGAAAATCGGCGGTGT+CGG | 0.528802 | 1_2:-12702454 | None:intergenic |
| ACTAATTTAGCAAACAATCA+AGG | 0.529332 | 1_2:-12708312 | None:intergenic |
| TGTTGAAGCTTTAAGAGCTA+AGG | 0.529338 | 1_2:+12707514 | Msa0056930:CDS |
| TGAAATATGTCTATTGACAT+TGG | 0.529642 | 1_2:+12708399 | Msa0056930:three_prime_UTR |
| AGCTCTTAAAGCTTCAACAT+CGG | 0.530694 | 1_2:-12707510 | None:intergenic |
| GCTTCATCATCTTCATCAGA+TGG | 0.530813 | 1_2:-12705931 | None:intergenic |
| CTCAATAGTTGCAGTGATGG+TGG | 0.531409 | 1_2:-12704996 | None:intergenic |
| ACATGTTGAAAATGAAGTTA+CGG | 0.531605 | 1_2:-12704918 | None:intergenic |
| TTTCTTAGGTTGAACAGCTG+AGG | 0.532387 | 1_2:+12707402 | Msa0056930:intron |
| AAAACAAGCATACACAAACT+TGG | 0.533401 | 1_2:-12708190 | None:intergenic |
| TCGCCTACAATCACCGTCCA+TGG | 0.536280 | 1_2:+12707988 | Msa0056930:CDS |
| CAATCATCCATTTCTGCCAC+CGG | 0.538002 | 1_2:+12705022 | Msa0056930:CDS |
| TGAAGCGTCGTTTCCATGGA+CGG | 0.541190 | 1_2:-12708001 | None:intergenic |
| TGACATTGGAATCATGGTAA+AGG | 0.549574 | 1_2:+12708413 | Msa0056930:three_prime_UTR |
| AGCATCGCGAAATTGTTGGC+TGG | 0.553901 | 1_2:-12707462 | None:intergenic |
| GTCGTCGATTGCTGTTTCGA+CGG | 0.555171 | 1_2:-12702364 | None:intergenic |
| GGTGTCGGCGATGTTTGCTC+TGG | 0.562967 | 1_2:+12702423 | Msa0056930:CDS |
| CTAGGTTTATTAGCTGACAC+TGG | 0.571493 | 1_2:-12705853 | None:intergenic |
| AGCACATTTGGCAGACCTTG+AGG | 0.572432 | 1_2:+12707252 | Msa0056930:CDS |
| TCTGATGAAGATGATGAAGC+AGG | 0.584800 | 1_2:+12705934 | Msa0056930:CDS |
| GGGTTTGTACTTTGTTCACA+AGG | 0.595616 | 1_2:-12705958 | None:intergenic |
| AATTAATTACCTGAACCTCA+AGG | 0.595756 | 1_2:-12707267 | None:intergenic |
| ATGGATCCATTCATCGGTGT+CGG | 0.602190 | 1_2:+12702408 | Msa0056930:CDS |
| AGACTCAATAGTTGCAGTGA+TGG | 0.603647 | 1_2:-12704999 | None:intergenic |
| AGTAGAGAAAATCAAACCAA+AGG | 0.615439 | 1_2:+12705874 | Msa0056930:CDS |
| TATGGAGGTTGCTGGCAGAA+TGG | 0.618667 | 1_2:-12702268 | None:intergenic |
| GGAGTGACTACAACAACAAG+TGG | 0.619797 | 1_2:+12705895 | Msa0056930:CDS |
| TTACTAGTGTTGATTTGTGG+CGG | 0.621086 | 1_2:-12707943 | None:intergenic |
| TGTAAGATGGATCCATTCAT+CGG | 0.623168 | 1_2:+12702402 | Msa0056930:CDS |
| AACTGGACACTACAATATTG+TGG | 0.637892 | 1_2:-12708160 | None:intergenic |
| GCGAAACATGCGCCATACAA+CGG | 0.641264 | 1_2:-12707969 | None:intergenic |
| AATTTAGGTGAAGTTAGCAG+AGG | 0.643088 | 1_2:+12707846 | Msa0056930:intron |
| ATGTATATGGAACTCATTGG+TGG | 0.643564 | 1_2:+12708367 | Msa0056930:three_prime_UTR |
| ATGAATGGATCCATCTTACA+CGG | 0.644634 | 1_2:-12702399 | None:intergenic |
| ATAATGTATATGGAACTCAT+TGG | 0.648854 | 1_2:+12708364 | Msa0056930:three_prime_UTR |
| TTCATCAGATGGATCACGTG+AGG | 0.658342 | 1_2:-12705920 | None:intergenic |
| GACCAGATTATGAAAATCGG+CGG | 0.666849 | 1_2:-12702460 | None:intergenic |
| CTAATCGCGAGTCTGCCAGA+AGG | 0.671078 | 1_2:+12707212 | Msa0056930:CDS |
| AGTGTTGATTTGTGGCGGAG+TGG | 0.681459 | 1_2:-12707938 | None:intergenic |
| GCAGAGGATATGGTCTCTAG+GGG | 0.691454 | 1_2:+12707862 | Msa0056930:CDS |
| ATCGAAGCTGGAGAATATGG+AGG | 0.698276 | 1_2:-12702283 | None:intergenic |
| TAAGACGCTTCATATCAACA+GGG | 0.724365 | 1_2:-12705978 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAACTAAATTTTACATTTTA+AGG | - | chr1_2:12702746-12702765 | None:intergenic | 10.0% |
| !! | AGATTAATTTATTTGAATAA+AGG | + | chr1_2:12703913-12703932 | Msa0056930:intron | 10.0% |
| !! | GATTAATTTATTTGAATAAA+GGG | + | chr1_2:12703914-12703933 | Msa0056930:intron | 10.0% |
| !!! | CATAATTTTAACATTTTAAT+TGG | - | chr1_2:12705237-12705256 | None:intergenic | 10.0% |
| !! | ATATAATAGTAAATATAAAG+TGG | + | chr1_2:12705342-12705361 | Msa0056930:intron | 10.0% |
| !! | ATGATATATATAAACTATTA+TGG | - | chr1_2:12705790-12705809 | None:intergenic | 10.0% |
| !!! | AGAAATCATATTATTTTTTT+GGG | + | chr1_2:12706212-12706231 | Msa0056930:intron | 10.0% |
| !!! | TTATTAATTTATGATTTTCT+TGG | + | chr1_2:12706792-12706811 | Msa0056930:intron | 10.0% |
| !!! | TATTAATTTATGATTTTCTT+GGG | + | chr1_2:12706793-12706812 | Msa0056930:intron | 10.0% |
| !!! | ATAATAAGATAATAATTTTC+GGG | - | chr1_2:12706834-12706853 | None:intergenic | 10.0% |
| !! | AAATATAAAATCACATTTAA+AGG | - | chr1_2:12707032-12707051 | None:intergenic | 10.0% |
| !!! | GTTTTTAATTGAATTAATTT+TGG | - | chr1_2:12707138-12707157 | None:intergenic | 10.0% |
| !!! | AATTTTTTTTTTGTTACAAA+AGG | - | chr1_2:12707319-12707338 | None:intergenic | 10.0% |
| !!! | TTTATTATATTTTGTTTCTT+AGG | + | chr1_2:12707388-12707407 | Msa0056930:intron | 10.0% |
| !!! | TTAAAATTTTGCCTATTTAT+AGG | + | chr1_2:12702153-12702172 | Msa0056930:five_prime_UTR | 15.0% |
| !! | ATAGAATACATCAATTATAA+AGG | - | chr1_2:12702873-12702892 | None:intergenic | 15.0% |
| !! | TTATGACAAAATAATAAATC+CGG | + | chr1_2:12702976-12702995 | Msa0056930:intron | 15.0% |
| !!! | ATTTTTTTTGTCTTTTACTT+TGG | + | chr1_2:12703447-12703466 | Msa0056930:intron | 15.0% |
| !!! | TTTTTTTTGTCTTTTACTTT+GGG | + | chr1_2:12703448-12703467 | Msa0056930:intron | 15.0% |
| !!! | TTAGATACTTTTATTTCAAA+AGG | + | chr1_2:12703724-12703743 | Msa0056930:intron | 15.0% |
| !! | AATTTATAGTAAGATGAATT+AGG | + | chr1_2:12704067-12704086 | Msa0056930:intron | 15.0% |
| !! | GTAAAAAAAATGAATAGAAA+AGG | + | chr1_2:12704233-12704252 | Msa0056930:intron | 15.0% |
| !!! | TTTTCTATGTTGTTTTATTT+AGG | + | chr1_2:12704486-12704505 | Msa0056930:intron | 15.0% |
| !!! | TTTCTATGTTGTTTTATTTA+GGG | + | chr1_2:12704487-12704506 | Msa0056930:intron | 15.0% |
| !! | AAAAAAAGAAACAATTCATT+AGG | - | chr1_2:12704564-12704583 | None:intergenic | 15.0% |
| !!! | CACTTTATATTTCTTTATTT+TGG | - | chr1_2:12705395-12705414 | None:intergenic | 15.0% |
| !! | CAAAATAAAGAAATATAAAG+TGG | + | chr1_2:12705393-12705412 | Msa0056930:intron | 15.0% |
| !! | TAAGTAATCTTATCTTATAT+TGG | - | chr1_2:12705654-12705673 | None:intergenic | 15.0% |
| !!! | ATTTTATAAATTCTCAATGT+TGG | + | chr1_2:12706047-12706066 | Msa0056930:intron | 15.0% |
| !! | TCTTATAATATATAAACTCA+TGG | - | chr1_2:12706193-12706212 | None:intergenic | 15.0% |
| !!! | GAGAAATCATATTATTTTTT+TGG | + | chr1_2:12706211-12706230 | Msa0056930:intron | 15.0% |
| !!! | GAAATCATATTATTTTTTTG+GGG | + | chr1_2:12706213-12706232 | Msa0056930:intron | 15.0% |
| !!! | AAATCATATTATTTTTTTGG+GGG | + | chr1_2:12706214-12706233 | Msa0056930:intron | 15.0% |
| !! | TCTAAATTAATAAATTTCTC+CGG | - | chr1_2:12706506-12706525 | None:intergenic | 15.0% |
| !!! | AGTTTTTCAATTTTTTACAT+TGG | + | chr1_2:12706861-12706880 | Msa0056930:intron | 15.0% |
| !! | ACTAAAATAATAAATTTGTC+CGG | - | chr1_2:12706899-12706918 | None:intergenic | 15.0% |
| !!! | AAACTCTTTAATTTAATACT+CGG | - | chr1_2:12706937-12706956 | None:intergenic | 15.0% |
| !! | ATATAATAAAATTCTCATAG+TGG | - | chr1_2:12707378-12707397 | None:intergenic | 15.0% |
| !! | AACTTTATATATATACTTAG+TGG | + | chr1_2:12708267-12708286 | Msa0056930:three_prime_UTR | 15.0% |
| !! | AAATCATCATTTATTATTGC+TGG | + | chr1_2:12702617-12702636 | Msa0056930:intron | 20.0% |
| !!! | TACATTTTAAGGTGAATAAT+CGG | - | chr1_2:12702735-12702754 | None:intergenic | 20.0% |
| !!! | ATTATAAAGGTTGATTTGAT+TGG | - | chr1_2:12702860-12702879 | None:intergenic | 20.0% |
| !!! | GTATCACTACAATTTTAATT+TGG | - | chr1_2:12703068-12703087 | None:intergenic | 20.0% |
| !!! | TCAATAATTCATGTTTGTTT+TGG | - | chr1_2:12703103-12703122 | None:intergenic | 20.0% |
| !! | TCTATCTTAATTCTTTGATT+TGG | - | chr1_2:12703170-12703189 | None:intergenic | 20.0% |
| !!! | GAGTTTTTTTTTTATGTGAA+TGG | + | chr1_2:12703198-12703217 | Msa0056930:intron | 20.0% |
| !!! | TTTTTTATGTGAATGGAATT+TGG | + | chr1_2:12703205-12703224 | Msa0056930:intron | 20.0% |
| !! | ATGGAATTTGGTATATTTAA+AGG | + | chr1_2:12703217-12703236 | Msa0056930:intron | 20.0% |
| !! | TGGAATTTGGTATATTTAAA+GGG | + | chr1_2:12703218-12703237 | Msa0056930:intron | 20.0% |
| !! | AATTTATTTGAATAAAGGGA+TGG | + | chr1_2:12703918-12703937 | Msa0056930:intron | 20.0% |
| !! | TTAACCAAACAACAAAAATA+GGG | - | chr1_2:12703951-12703970 | None:intergenic | 20.0% |
| !! | ATTAACCAAACAACAAAAAT+AGG | - | chr1_2:12703952-12703971 | None:intergenic | 20.0% |
| !! | ATATAATAGAAAAGAAGAGA+GGG | - | chr1_2:12704147-12704166 | None:intergenic | 20.0% |
| !! | AATATAATAGAAAAGAAGAG+AGG | - | chr1_2:12704148-12704167 | None:intergenic | 20.0% |
| !!! | TTTTTAATAGTGTTTGATTG+AGG | - | chr1_2:12704172-12704191 | None:intergenic | 20.0% |
| !!! | TATATTTACTTTTCATGAAG+TGG | + | chr1_2:12704373-12704392 | Msa0056930:intron | 20.0% |
| !!! | TTCTATGTTGTTTTATTTAG+GGG | + | chr1_2:12704488-12704507 | Msa0056930:intron | 20.0% |
| !!! | ATGATTTTTTACCTTCTTTA+AGG | - | chr1_2:12704619-12704638 | None:intergenic | 20.0% |
| !!! | CATTTTTTTCCTGAATTAAT+AGG | - | chr1_2:12704682-12704701 | None:intergenic | 20.0% |
| !!! | TATATAACATAGAGTATTAC+CGG | - | chr1_2:12705044-12705063 | None:intergenic | 20.0% |
| !!! | AGAAATATGTTTCTTTTCTT+TGG | + | chr1_2:12705146-12705165 | Msa0056930:intron | 20.0% |
| !! | TAAATATAAAGTGGAGTTTA+GGG | + | chr1_2:12705351-12705370 | Msa0056930:intron | 20.0% |
| !! | ACATGGATTTCTTAAATTTA+TGG | - | chr1_2:12705457-12705476 | None:intergenic | 20.0% |
| !! | ACAATGAAGTTATCTATAAA+GGG | - | chr1_2:12705727-12705746 | None:intergenic | 20.0% |
| !! | TACAATGAAGTTATCTATAA+AGG | - | chr1_2:12705728-12705747 | None:intergenic | 20.0% |
| !!! | ATATATCATAGAGCTTATTT+TGG | + | chr1_2:12705801-12705820 | Msa0056930:intron | 20.0% |
| !!! | TTTTGGATTGAATTGTATAA+TGG | + | chr1_2:12705818-12705837 | Msa0056930:intron | 20.0% |
| !! | TTCAAAAAAATTCTCAATGT+TGG | + | chr1_2:12706074-12706093 | Msa0056930:intron | 20.0% |
| !!! | ATTAAAGAAGAACTTTTACT+AGG | + | chr1_2:12706127-12706146 | Msa0056930:intron | 20.0% |
| !! | AGAGAAATTATAATCTAACA+AGG | + | chr1_2:12706239-12706258 | Msa0056930:intron | 20.0% |
| !!! | TGCATATTTGAATTTACTTT+TGG | + | chr1_2:12706385-12706404 | Msa0056930:intron | 20.0% |
| !!! | TGAAGACTTAAAATTGATTT+TGG | + | chr1_2:12706426-12706445 | Msa0056930:intron | 20.0% |
| !!! | AAATTGATTTTGGTATGTTT+TGG | + | chr1_2:12706436-12706455 | Msa0056930:intron | 20.0% |
| !! | CTCTATAAATTAATAATGTC+AGG | + | chr1_2:12706479-12706498 | Msa0056930:intron | 20.0% |
| !!! | TTTTGCCAAAAATATTTTGT+TGG | + | chr1_2:12707762-12707781 | Msa0056930:intron | 20.0% |
| !!! | TTTGCCAAAAATATTTTGTT+GGG | + | chr1_2:12707763-12707782 | Msa0056930:intron | 20.0% |
| !!! | AAGAATTTTATGTCCAATTT+AGG | + | chr1_2:12707831-12707850 | Msa0056930:intron | 20.0% |
| ! | GAGAGAAAAGAAAAAGAAAA+GGG | - | chr1_2:12702200-12702219 | None:intergenic | 25.0% |
| ! | AGAGAGAAAAGAAAAAGAAA+AGG | - | chr1_2:12702201-12702220 | None:intergenic | 25.0% |
| ! | TCATTTATTATTGCTGGTAA+TGG | + | chr1_2:12702623-12702642 | Msa0056930:intron | 25.0% |
| !!! | ACATTTTAAGGTGAATAATC+GGG | - | chr1_2:12702734-12702753 | None:intergenic | 25.0% |
| !!! | ATTAGAGATATTCAAGTTGT+TGG | + | chr1_2:12702930-12702949 | Msa0056930:intron | 25.0% |
| !!! | TGTTTGTTTTGGTAGAATTA+CGG | - | chr1_2:12703092-12703111 | None:intergenic | 25.0% |
| !!! | ATCTTTTTTTTTGTAGTGGT+CGG | - | chr1_2:12703606-12703625 | None:intergenic | 25.0% |
| !!! | GAACATCTTTTTTTTTGTAG+TGG | - | chr1_2:12703610-12703629 | None:intergenic | 25.0% |
| ! | AATCAAACATTAAACATGCA+TGG | + | chr1_2:12703693-12703712 | Msa0056930:intron | 25.0% |
| !! | GACTAATACAAGGTTTTTAT+TGG | + | chr1_2:12703749-12703768 | Msa0056930:intron | 25.0% |
| !!! | CTTTTCTTGGTTAGTTTTTT+AGG | - | chr1_2:12704108-12704127 | None:intergenic | 25.0% |
| !! | GCTATAATTCATTCTTTTCT+TGG | - | chr1_2:12704121-12704140 | None:intergenic | 25.0% |
| ! | TTACAAGTGACAAATTGAAA+AGG | + | chr1_2:12704203-12704222 | Msa0056930:intron | 25.0% |
| ! | GACAAATTGAAAAGGAATAT+AGG | + | chr1_2:12704211-12704230 | Msa0056930:intron | 25.0% |
| ! | AATATAATAGAGCAACAACA+TGG | + | chr1_2:12704256-12704275 | Msa0056930:intron | 25.0% |
| ! | ATATAATAGAGCAACAACAT+GGG | + | chr1_2:12704257-12704276 | Msa0056930:intron | 25.0% |
| !! | GGACATAATTTTCATATAGA+AGG | - | chr1_2:12704295-12704314 | None:intergenic | 25.0% |
| !! | CATATTTGTTAAGAGTCTAT+TGG | - | chr1_2:12704345-12704364 | None:intergenic | 25.0% |
| ! | CAATAATTCTATTACTAGCT+AGG | - | chr1_2:12704400-12704419 | None:intergenic | 25.0% |
| ! | TAGAAAAGCTAAGCTATAAA+AGG | - | chr1_2:12704473-12704492 | None:intergenic | 25.0% |
| !!! | TTTGATTTATACCTTTTGCT+TGG | + | chr1_2:12704525-12704544 | Msa0056930:intron | 25.0% |
| ! | AATAAAGACGTGTAAATGAA+AGG | + | chr1_2:12704588-12704607 | Msa0056930:intron | 25.0% |
| ! | GCTACATATGAAAATTTGAT+AGG | + | chr1_2:12704639-12704658 | Msa0056930:intron | 25.0% |
| !! | TTAGAGTAATGTTATTTGTC+TGG | - | chr1_2:12704845-12704864 | None:intergenic | 25.0% |
| ! | ACATGTTGAAAATGAAGTTA+CGG | - | chr1_2:12704921-12704940 | None:intergenic | 25.0% |
| !!! | CAAACAAGAGTATTATTTGT+TGG | - | chr1_2:12704950-12704969 | None:intergenic | 25.0% |
| ! | TTTGCTAGCAAAATTTATAC+TGG | - | chr1_2:12705087-12705106 | None:intergenic | 25.0% |
| ! | GTAAATATAAAGTGGAGTTT+AGG | + | chr1_2:12705350-12705369 | Msa0056930:intron | 25.0% |
| !!! | CTTTATTTTGGTACAAAAGA+GGG | - | chr1_2:12705383-12705402 | None:intergenic | 25.0% |
| !!! | TCTTTATTTTGGTACAAAAG+AGG | - | chr1_2:12705384-12705403 | None:intergenic | 25.0% |
| ! | ATAAAGTGGAGTCTTAAAAT+AGG | + | chr1_2:12705407-12705426 | Msa0056930:intron | 25.0% |
| !!! | GGGATTTTTAAGATAATTGT+AGG | + | chr1_2:12705497-12705516 | Msa0056930:intron | 25.0% |
| !! | GGATTTATCTAGTTCAAAAT+AGG | - | chr1_2:12706167-12706186 | None:intergenic | 25.0% |
| ! | TAATATATAAACTCATGGTC+TGG | - | chr1_2:12706188-12706207 | None:intergenic | 25.0% |
| ! | GAAATTATAATCTAACAAGG+TGG | + | chr1_2:12706242-12706261 | Msa0056930:intron | 25.0% |
| ! | TAAATTAATAATGTCAGGAC+CGG | + | chr1_2:12706484-12706503 | Msa0056930:intron | 25.0% |
| ! | ACTGTACATATCAAACAAAA+AGG | + | chr1_2:12706586-12706605 | Msa0056930:intron | 25.0% |
| !! | TGATTTTCTTGGGATTATAA+AGG | + | chr1_2:12706803-12706822 | Msa0056930:intron | 25.0% |
| !! | GATTTTCTTGGGATTATAAA+GGG | + | chr1_2:12706804-12706823 | Msa0056930:intron | 25.0% |
| ! | TTCAGGTAATTAATTGAACT+TGG | + | chr1_2:12707275-12707294 | Msa0056930:intron | 25.0% |
| ! | ATAACTAGTGATTTCAAAGA+TGG | - | chr1_2:12707342-12707361 | None:intergenic | 25.0% |
| !! | AAAATTCTCATAGTGGAAAT+TGG | - | chr1_2:12707371-12707390 | None:intergenic | 25.0% |
| ! | TTACGATTAGATTGCAAAAA+CGG | + | chr1_2:12707571-12707590 | Msa0056930:intron | 25.0% |
| ! | AAAAATGTTGTGTGACATAT+CGG | + | chr1_2:12707641-12707660 | Msa0056930:intron | 25.0% |
| !!! | GAATTCTTGATTTGTAATCA+CGG | - | chr1_2:12707678-12707697 | None:intergenic | 25.0% |
| !! | TTACATGAATTTGATGATCT+TGG | - | chr1_2:12707722-12707741 | None:intergenic | 25.0% |
| !! | TTGCCAAAAATATTTTGTTG+GGG | + | chr1_2:12707764-12707783 | Msa0056930:intron | 25.0% |
| !! | TATCCCCAACAAAATATTTT+TGG | - | chr1_2:12707770-12707789 | None:intergenic | 25.0% |
| ! | ACTAATTTAGCAAACAATCA+AGG | - | chr1_2:12708315-12708334 | None:intergenic | 25.0% |
| ! | ATAATGTATATGGAACTCAT+TGG | + | chr1_2:12708364-12708383 | Msa0056930:three_prime_UTR | 25.0% |
| ! | TGAAATATGTCTATTGACAT+TGG | + | chr1_2:12708399-12708418 | Msa0056930:three_prime_UTR | 25.0% |
| ACTGACCAGATTATGAAAAT+CGG | - | chr1_2:12702466-12702485 | None:intergenic | 30.0% | |
| TAATACAACCGTAGTTAGTA+GGG | - | chr1_2:12702568-12702587 | None:intergenic | 30.0% | |
| TTAATACAACCGTAGTTAGT+AGG | - | chr1_2:12702569-12702588 | None:intergenic | 30.0% | |
| TATCAAAGTAGAAACTCCAA+AGG | - | chr1_2:12702654-12702673 | None:intergenic | 30.0% | |
| CTTCAAAGATATACTTCAAC+CGG | - | chr1_2:12702998-12703017 | None:intergenic | 30.0% | |
| ATATTTAAAGGGTGAAGCAA+AGG | + | chr1_2:12703229-12703248 | Msa0056930:intron | 30.0% | |
| ! | ACTTTGTTTAGTGATGAAGA+AGG | + | chr1_2:12703278-12703297 | Msa0056930:intron | 30.0% |
| TGCATAATATATGCAAAGTC+CGG | + | chr1_2:12703570-12703589 | Msa0056930:intron | 30.0% | |
| !!! | TCTTTTTTTTTGTAGTGGTC+GGG | - | chr1_2:12703605-12703624 | None:intergenic | 30.0% |
| TCAAAAGGAAGACTAATACA+AGG | + | chr1_2:12703739-12703758 | Msa0056930:intron | 30.0% | |
| TATAGCGAATAACCATTGTA+TGG | - | chr1_2:12703783-12703802 | None:intergenic | 30.0% | |
| ACTAATTGACAACCAAACTT+TGG | + | chr1_2:12703863-12703882 | Msa0056930:intron | 30.0% | |
| AATTAATCTTTCGCTTCCTT+CGG | - | chr1_2:12703902-12703921 | None:intergenic | 30.0% | |
| !!! | GAAACCCTATTTTTGTTGTT+TGG | + | chr1_2:12703944-12703963 | Msa0056930:intron | 30.0% |
| CATGTGATATTGAAGAAACT+TGG | - | chr1_2:12704039-12704058 | None:intergenic | 30.0% | |
| !!! | AGTTTTTTAGGAGAAGCATA+GGG | - | chr1_2:12704096-12704115 | None:intergenic | 30.0% |
| !!! | TAGTTTTTTAGGAGAAGCAT+AGG | - | chr1_2:12704097-12704116 | None:intergenic | 30.0% |
| ! | ATTTTCATATAGAAGGCCAA+AGG | - | chr1_2:12704288-12704307 | None:intergenic | 30.0% |
| TGAAAATTATGTCCAATGCA+TGG | + | chr1_2:12704301-12704320 | Msa0056930:intron | 30.0% | |
| GAAAGGAATATCCTTAAAGA+AGG | + | chr1_2:12704605-12704624 | Msa0056930:intron | 30.0% | |
| AGTTGACAACCTATTAATTC+AGG | + | chr1_2:12704670-12704689 | Msa0056930:intron | 30.0% | |
| ! | GTAACTTCATTTTCAACATG+TGG | + | chr1_2:12704920-12704939 | Msa0056930:CDS | 30.0% |
| AATCCATGTAATCATGAAGT+TGG | + | chr1_2:12705468-12705487 | Msa0056930:intron | 30.0% | |
| ! | CTTTTTGTGTTATGATGCAA+TGG | + | chr1_2:12705582-12705601 | Msa0056930:intron | 30.0% |
| TGTAATTATGACTGTTGCAT+TGG | - | chr1_2:12705682-12705701 | None:intergenic | 30.0% | |
| !! | TTGGTTTGATTTTCTCTACT+AGG | - | chr1_2:12705874-12705893 | None:intergenic | 30.0% |
| AGTAGAGAAAATCAAACCAA+AGG | + | chr1_2:12705874-12705893 | Msa0056930:CDS | 30.0% | |
| ! | CAGTGTACTTTTACTACTTT+AGG | - | chr1_2:12706331-12706350 | None:intergenic | 30.0% |
| GTACAGTAAATGTAAACAAG+AGG | + | chr1_2:12706717-12706736 | Msa0056930:intron | 30.0% | |
| CAAACTATATAACTTCAAGC+TGG | - | chr1_2:12707000-12707019 | None:intergenic | 30.0% | |
| TACACTCTTAATGTGATTTC+AGG | + | chr1_2:12707182-12707201 | Msa0056930:intron | 30.0% | |
| AAGAAGAAAACAAGCACATT+TGG | + | chr1_2:12707240-12707259 | Msa0056930:CDS | 30.0% | |
| AATTAATTACCTGAACCTCA+AGG | - | chr1_2:12707270-12707289 | None:intergenic | 30.0% | |
| ACATGAAAGAACTTGTAAAG+TGG | - | chr1_2:12707548-12707567 | None:intergenic | 30.0% | |
| !! | TGTTCAATTGACTCTGATTT+TGG | - | chr1_2:12707918-12707937 | None:intergenic | 30.0% |
| !! | AGATTACTAGTGTTGATTTG+TGG | - | chr1_2:12707949-12707968 | None:intergenic | 30.0% |
| ACAAACTTGGATATTCTAAC+TGG | - | chr1_2:12708180-12708199 | None:intergenic | 30.0% | |
| AAAACAAGCATACACAAACT+TGG | - | chr1_2:12708193-12708212 | None:intergenic | 30.0% | |
| TTAGTGGTGTATGTATCAAA+TGG | + | chr1_2:12708283-12708302 | Msa0056930:three_prime_UTR | 30.0% | |
| ! | GTGATGGTGTATAATGTATA+TGG | + | chr1_2:12708354-12708373 | Msa0056930:three_prime_UTR | 30.0% |
| AGGAGAGAAAAATGGAAAAG+AGG | - | chr1_2:12702224-12702243 | None:intergenic | 35.0% | |
| ! | TTGATCATGAACTTTTCACG+AGG | + | chr1_2:12702331-12702350 | Msa0056930:CDS | 35.0% |
| ATGAATGGATCCATCTTACA+CGG | - | chr1_2:12702402-12702421 | None:intergenic | 35.0% | |
| TGTAAGATGGATCCATTCAT+CGG | + | chr1_2:12702402-12702421 | Msa0056930:CDS | 35.0% | |
| AAACGTTTCCCTACTAACTA+CGG | + | chr1_2:12702557-12702576 | Msa0056930:intron | 35.0% | |
| !! | AGAGATATTCAAGTTGTTGG+AGG | + | chr1_2:12702933-12702952 | Msa0056930:intron | 35.0% |
| !! | GAGATATTCAAGTTGTTGGA+GGG | + | chr1_2:12702934-12702953 | Msa0056930:intron | 35.0% |
| AAGTTCTATCACAAAACCAC+AGG | - | chr1_2:12703140-12703159 | None:intergenic | 35.0% | |
| ACTGAAACATGAACATCTAG+AGG | - | chr1_2:12703518-12703537 | None:intergenic | 35.0% | |
| !!! | CTTTTTTTTTGTAGTGGTCG+GGG | - | chr1_2:12703604-12703623 | None:intergenic | 35.0% |
| CCTTATGCAGAGAGAATTTA+TGG | - | chr1_2:12703655-12703674 | None:intergenic | 35.0% | |
| CCATAAATTCTCTCTGCATA+AGG | + | chr1_2:12703652-12703671 | Msa0056930:intron | 35.0% | |
| GCATAAGGTGATTATTTACG+AGG | + | chr1_2:12703667-12703686 | Msa0056930:intron | 35.0% | |
| CGAATAACCATTGTATGGTT+TGG | - | chr1_2:12703778-12703797 | None:intergenic | 35.0% | |
| GATATTGAAGAAACTTGGAG+AGG | - | chr1_2:12704034-12704053 | None:intergenic | 35.0% | |
| TCCAATGCATGGTATCTATT+AGG | + | chr1_2:12704312-12704331 | Msa0056930:intron | 35.0% | |
| ACCTAATAGATACCATGCAT+TGG | - | chr1_2:12704316-12704335 | None:intergenic | 35.0% | |
| ATTATTGCCCACAATCTTAG+TGG | + | chr1_2:12704413-12704432 | Msa0056930:intron | 35.0% | |
| TTATTGCCCACAATCTTAGT+GGG | + | chr1_2:12704414-12704433 | Msa0056930:intron | 35.0% | |
| ! | GTTTTTGCTTTCCAAGCAAA+AGG | - | chr1_2:12704539-12704558 | None:intergenic | 35.0% |
| ATCATACATGTGATCGTATG+TGG | - | chr1_2:12704752-12704771 | None:intergenic | 35.0% | |
| TCACATAGCTAGAATTCGAT+TGG | + | chr1_2:12704771-12704790 | Msa0056930:intron | 35.0% | |
| AAGGGCTGAATTAAGAACAA+TGG | - | chr1_2:12704883-12704902 | None:intergenic | 35.0% | |
| ! | ATAACATAGAGTATTACCGG+TGG | - | chr1_2:12705041-12705060 | None:intergenic | 35.0% |
| !! | TAAAGTGGAGTTTAGGGTTT+TGG | + | chr1_2:12705357-12705376 | Msa0056930:intron | 35.0% |
| TTGCCAACTTCATGATTACA+TGG | - | chr1_2:12705474-12705493 | None:intergenic | 35.0% | |
| TAATCATGAAGTTGGCAAGT+TGG | + | chr1_2:12705476-12705495 | Msa0056930:intron | 35.0% | |
| AATCATGAAGTTGGCAAGTT+GGG | + | chr1_2:12705477-12705496 | Msa0056930:intron | 35.0% | |
| TTGTGTTATGATGCAATGGT+TGG | + | chr1_2:12705586-12705605 | Msa0056930:intron | 35.0% | |
| TGTGTTATGATGCAATGGTT+GGG | + | chr1_2:12705587-12705606 | Msa0056930:intron | 35.0% | |
| ! | ATTATGACTGTTGCATTGGT+GGG | - | chr1_2:12705678-12705697 | None:intergenic | 35.0% |
| AATTATGACTGTTGCATTGG+TGG | - | chr1_2:12705679-12705698 | None:intergenic | 35.0% | |
| TAAGACGCTTCATATCAACA+GGG | - | chr1_2:12705981-12706000 | None:intergenic | 35.0% | |
| ! | TTGATATGAAGCGTCTTAGA+AGG | + | chr1_2:12705983-12706002 | Msa0056930:CDS | 35.0% |
| CTATTGTCATCATGTACATG+TGG | - | chr1_2:12706301-12706320 | None:intergenic | 35.0% | |
| CATGTACATGATGACAATAG+AGG | + | chr1_2:12706301-12706320 | Msa0056930:intron | 35.0% | |
| TTAGTAACTACTGTGCTCAT+AGG | + | chr1_2:12706667-12706686 | Msa0056930:intron | 35.0% | |
| !!! | TTTTTTACATTGGCCCAAGT+CGG | + | chr1_2:12706871-12706890 | Msa0056930:intron | 35.0% |
| GTGTTCAACTTTCACGTTAA+CGG | + | chr1_2:12707059-12707078 | Msa0056930:intron | 35.0% | |
| CTCTTAATGTGATTTCAGGA+AGG | + | chr1_2:12707186-12707205 | Msa0056930:intron | 35.0% | |
| !! | ATGTGCTTGTTTTCTTCTTC+TGG | - | chr1_2:12707239-12707258 | None:intergenic | 35.0% |
| CATCTGTAAGCTGCTTAAAT+AGG | - | chr1_2:12707442-12707461 | None:intergenic | 35.0% | |
| AGCTCTTAAAGCTTCAACAT+CGG | - | chr1_2:12707513-12707532 | None:intergenic | 35.0% | |
| !! | TGTTGAAGCTTTAAGAGCTA+AGG | + | chr1_2:12707514-12707533 | Msa0056930:CDS | 35.0% |
| TTTGTAATCACGGTATGTGT+TGG | - | chr1_2:12707668-12707687 | None:intergenic | 35.0% | |
| TCTGCTAACTTCACCTAAAT+TGG | - | chr1_2:12707847-12707866 | None:intergenic | 35.0% | |
| AATTTAGGTGAAGTTAGCAG+AGG | + | chr1_2:12707846-12707865 | Msa0056930:intron | 35.0% | |
| AGAAGCTGGTTGTTAAAAGT+AGG | - | chr1_2:12707895-12707914 | None:intergenic | 35.0% | |
| !! | TTACTAGTGTTGATTTGTGG+CGG | - | chr1_2:12707946-12707965 | None:intergenic | 35.0% |
| TGCAGTCATGATTTCAACAA+TGG | + | chr1_2:12708078-12708097 | Msa0056930:CDS | 35.0% | |
| AACTGGACACTACAATATTG+TGG | - | chr1_2:12708163-12708182 | None:intergenic | 35.0% | |
| ! | CATCACACTCACTTCATTTT+TGG | - | chr1_2:12708340-12708359 | None:intergenic | 35.0% |
| CAAAAATGAAGTGAGTGTGA+TGG | + | chr1_2:12708338-12708357 | Msa0056930:three_prime_UTR | 35.0% | |
| ATGTATATGGAACTCATTGG+TGG | + | chr1_2:12708367-12708386 | Msa0056930:three_prime_UTR | 35.0% | |
| GTCTATTGACATTGGAATCA+TGG | + | chr1_2:12708407-12708426 | Msa0056930:three_prime_UTR | 35.0% | |
| TGACATTGGAATCATGGTAA+AGG | + | chr1_2:12708413-12708432 | Msa0056930:three_prime_UTR | 35.0% | |
| CATTTCGCAGGAGAGAAAAA+TGG | - | chr1_2:12702232-12702251 | None:intergenic | 40.0% | |
| ! | CATTTTTCTCTCCTGCGAAA+TGG | + | chr1_2:12702230-12702249 | Msa0056930:exon | 40.0% |
| ATTCTGCTGTGATCCATTTG+AGG | - | chr1_2:12702311-12702330 | None:intergenic | 40.0% | |
| ! | ATCATGAACTTTTCACGAGG+CGG | + | chr1_2:12702334-12702353 | Msa0056930:CDS | 40.0% |
| !! | ATTGCTGTTTCGACGGTAAT+GGG | - | chr1_2:12702360-12702379 | None:intergenic | 40.0% |
| CGATGTAAAACCGTGTAAGA+TGG | + | chr1_2:12702389-12702408 | Msa0056930:CDS | 40.0% | |
| ATTATGAAAATCGGCGGTGT+CGG | - | chr1_2:12702457-12702476 | None:intergenic | 40.0% | |
| GACCAGATTATGAAAATCGG+CGG | - | chr1_2:12702463-12702482 | None:intergenic | 40.0% | |
| AAGCTTGAAAGTCACGTTAG+AGG | - | chr1_2:12702531-12702550 | None:intergenic | 40.0% | |
| !!! | GCTGGTAATGGTTTTTCCTT+TGG | + | chr1_2:12702635-12702654 | Msa0056930:intron | 40.0% |
| GAAAGCAAACATGAAACCTG+TGG | + | chr1_2:12703121-12703140 | Msa0056930:intron | 40.0% | |
| TGAAGCAAAGGAACTTGTGA+AGG | + | chr1_2:12703241-12703260 | Msa0056930:intron | 40.0% | |
| ! | TGTGTTGTCTTTTGAACTCG+TGG | + | chr1_2:12703384-12703403 | Msa0056930:intron | 40.0% |
| ! | GTGTTGTCTTTTGAACTCGT+GGG | + | chr1_2:12703385-12703404 | Msa0056930:intron | 40.0% |
| TTGGCTTCCAAACCATACAA+TGG | + | chr1_2:12703768-12703787 | Msa0056930:intron | 40.0% | |
| TGAGAGACATGTCCAAAGTT+TGG | - | chr1_2:12703878-12703897 | None:intergenic | 40.0% | |
| ATTCAGCCCTTCATAATTGC+AGG | + | chr1_2:12704892-12704911 | Msa0056930:intron | 40.0% | |
| AGACTCAATAGTTGCAGTGA+TGG | - | chr1_2:12705002-12705021 | None:intergenic | 40.0% | |
| GTGTTATGATGCAATGGTTG+GGG | + | chr1_2:12705588-12705607 | Msa0056930:intron | 40.0% | |
| ! | TTATGACTGTTGCATTGGTG+GGG | - | chr1_2:12705677-12705696 | None:intergenic | 40.0% |
| CTAGGTTTATTAGCTGACAC+TGG | - | chr1_2:12705856-12705875 | None:intergenic | 40.0% | |
| TGTTGTTGTAGTCACTCCTT+TGG | - | chr1_2:12705893-12705912 | None:intergenic | 40.0% | |
| GCTTCATCATCTTCATCAGA+TGG | - | chr1_2:12705934-12705953 | None:intergenic | 40.0% | |
| TCTGATGAAGATGATGAAGC+AGG | + | chr1_2:12705934-12705953 | Msa0056930:CDS | 40.0% | |
| GGGTTTGTACTTTGTTCACA+AGG | - | chr1_2:12705961-12705980 | None:intergenic | 40.0% | |
| CTAAGACGCTTCATATCAAC+AGG | - | chr1_2:12705982-12706001 | None:intergenic | 40.0% | |
| CTAATTTACGTTGAGTCCCA+AGG | - | chr1_2:12706651-12706670 | None:intergenic | 40.0% | |
| ! | TTTTTACATTGGCCCAAGTC+GGG | + | chr1_2:12706872-12706891 | Msa0056930:intron | 40.0% |
| ! | TTTTCTTCTTCTGGACCTTC+TGG | - | chr1_2:12707230-12707249 | None:intergenic | 40.0% |
| !! | TTTCTTAGGTTGAACAGCTG+AGG | + | chr1_2:12707402-12707421 | Msa0056930:intron | 40.0% |
| TGTTAGCATCGCGAAATTGT+TGG | - | chr1_2:12707469-12707488 | None:intergenic | 40.0% | |
| !! | CAACATCGGATTTTAGCACT+CGG | - | chr1_2:12707499-12707518 | None:intergenic | 40.0% |
| CGATTAGATTGCAAAAACGG+AGG | + | chr1_2:12707574-12707593 | Msa0056930:intron | 40.0% | |
| CACTAGTAATCTCCGTTGTA+TGG | + | chr1_2:12707957-12707976 | Msa0056930:CDS | 40.0% | |
| AGTGGACAGAATTCAGCTAT+TGG | + | chr1_2:12708033-12708052 | Msa0056930:CDS | 40.0% | |
| CAGAATTCAGCTATTGGACT+TGG | + | chr1_2:12708039-12708058 | Msa0056930:CDS | 40.0% | |
| !! | TGAGCTCTTTGACTAGCTTA+TGG | + | chr1_2:12708118-12708137 | Msa0056930:CDS | 40.0% |
| GCTGCTTCGTGCCTATAAAT+AGG | - | chr1_2:12702167-12702186 | None:intergenic | 45.0% | |
| !!! | CCATTTTGGTTCCATTTCGC+AGG | - | chr1_2:12702244-12702263 | None:intergenic | 45.0% |
| CCTGCGAAATGGAACCAAAA+TGG | + | chr1_2:12702241-12702260 | Msa0056930:exon | 45.0% | |
| ATCGAAGCTGGAGAATATGG+AGG | - | chr1_2:12702286-12702305 | None:intergenic | 45.0% | |
| GTCATCGAAGCTGGAGAATA+TGG | - | chr1_2:12702289-12702308 | None:intergenic | 45.0% | |
| !! | GATTGCTGTTTCGACGGTAA+TGG | - | chr1_2:12702361-12702380 | None:intergenic | 45.0% |
| ATGGATCCATTCATCGGTGT+CGG | + | chr1_2:12702408-12702427 | Msa0056930:CDS | 45.0% | |
| !!! | CACCGCCGATTTTCATAATC+TGG | + | chr1_2:12702458-12702477 | Msa0056930:CDS | 45.0% |
| ! | AAACAAAGTCCCTGATGACG+TGG | - | chr1_2:12703267-12703286 | None:intergenic | 45.0% |
| TGGGAACGCACTACTTTATG+AGG | + | chr1_2:12703404-12703423 | Msa0056930:intron | 45.0% | |
| AACAACATGGGTCGTTCCTT+TGG | + | chr1_2:12704269-12704288 | Msa0056930:intron | 45.0% | |
| CAAGGACCCACTAAGATTGT+GGG | - | chr1_2:12704423-12704442 | None:intergenic | 45.0% | |
| ACAAGGACCCACTAAGATTG+TGG | - | chr1_2:12704424-12704443 | None:intergenic | 45.0% | |
| ! | TTAGTGGGTCCTTGTGAAAG+AGG | + | chr1_2:12704429-12704448 | Msa0056930:intron | 45.0% |
| AACACTCCACCTCTTTCACA+AGG | - | chr1_2:12704441-12704460 | None:intergenic | 45.0% | |
| CGGCATCCTGCAATTATGAA+GGG | - | chr1_2:12704901-12704920 | None:intergenic | 45.0% | |
| ACGGCATCCTGCAATTATGA+AGG | - | chr1_2:12704902-12704921 | None:intergenic | 45.0% | |
| ! | GTTCTTGGGAGTGAGGTTTT+GGG | - | chr1_2:12704975-12704994 | None:intergenic | 45.0% |
| ! | AGTTCTTGGGAGTGAGGTTT+TGG | - | chr1_2:12704976-12704995 | None:intergenic | 45.0% |
| CTCAATAGTTGCAGTGATGG+TGG | - | chr1_2:12704999-12705018 | None:intergenic | 45.0% | |
| CAATCATCCATTTCTGCCAC+CGG | + | chr1_2:12705022-12705041 | Msa0056930:CDS | 45.0% | |
| AGTATTACCGGTGGCAGAAA+TGG | - | chr1_2:12705032-12705051 | None:intergenic | 45.0% | |
| GGAGTGACTACAACAACAAG+TGG | + | chr1_2:12705895-12705914 | Msa0056930:CDS | 45.0% | |
| TTCATCAGATGGATCACGTG+AGG | - | chr1_2:12705923-12705942 | None:intergenic | 45.0% | |
| CGCTGCAACGTAATTCTAAG+AGG | - | chr1_2:12706626-12706645 | None:intergenic | 45.0% | |
| AATTACGTTGCAGCGAACCT+TGG | + | chr1_2:12706631-12706650 | Msa0056930:intron | 45.0% | |
| ATTACGTTGCAGCGAACCTT+GGG | + | chr1_2:12706632-12706651 | Msa0056930:intron | 45.0% | |
| GGTGAAGTTAGCAGAGGATA+TGG | + | chr1_2:12707852-12707871 | Msa0056930:intron | 45.0% | |
| TAGCAGAGGATATGGTCTCT+AGG | + | chr1_2:12707860-12707879 | Msa0056930:CDS | 45.0% | |
| AGCAGAGGATATGGTCTCTA+GGG | + | chr1_2:12707861-12707880 | Msa0056930:CDS | 45.0% | |
| !! | GACTCTGATTTTGGAGAAGC+TGG | - | chr1_2:12707909-12707928 | None:intergenic | 45.0% |
| TTTCCATGGACGGTGATTGT+AGG | - | chr1_2:12707994-12708013 | None:intergenic | 45.0% | |
| !! | CATATGAAGCGTCGTTTCCA+TGG | - | chr1_2:12708008-12708027 | None:intergenic | 45.0% |
| CATGGAAACGACGCTTCATA+TGG | + | chr1_2:12708006-12708025 | Msa0056930:CDS | 45.0% | |
| ! | GACGCTTCATATGGTGTTAG+TGG | + | chr1_2:12708015-12708034 | Msa0056930:CDS | 45.0% |
| !!! | AATAATAAGATAATAATTTT+CGG | - | chr1_2:12706835-12706854 | None:intergenic | 5.0% |
| ! | GGCAGAATGGTGCTCCATTT+TGG | - | chr1_2:12702258-12702277 | None:intergenic | 50.0% |
| TATGGAGGTTGCTGGCAGAA+TGG | - | chr1_2:12702271-12702290 | None:intergenic | 50.0% | |
| CTGGAGAATATGGAGGTTGC+TGG | - | chr1_2:12702279-12702298 | None:intergenic | 50.0% | |
| ! | CCATTTGAGGTCATCGAAGC+TGG | - | chr1_2:12702298-12702317 | None:intergenic | 50.0% |
| CCAGCTTCGATGACCTCAAA+TGG | + | chr1_2:12702295-12702314 | Msa0056930:CDS | 50.0% | |
| !! | GTCGTCGATTGCTGTTTCGA+CGG | - | chr1_2:12702367-12702386 | None:intergenic | 50.0% |
| TTGTGAAGGCCACGTCATCA+GGG | + | chr1_2:12703255-12703274 | Msa0056930:intron | 50.0% | |
| TGGACATGTCTCTCAACCGA+AGG | + | chr1_2:12703883-12703902 | Msa0056930:intron | 50.0% | |
| !! | GCAGTGATGGTGGAGTTCTT+GGG | - | chr1_2:12704989-12705008 | None:intergenic | 50.0% |
| !! | TGCAGTGATGGTGGAGTTCT+TGG | - | chr1_2:12704990-12705009 | None:intergenic | 50.0% |
| ACTACTGTGCTCATAGGCGT+TGG | + | chr1_2:12706673-12706692 | Msa0056930:intron | 50.0% | |
| AATTTGTCCGGTCCCGACTT+GGG | - | chr1_2:12706887-12706906 | None:intergenic | 50.0% | |
| AAATTTGTCCGGTCCCGACT+TGG | - | chr1_2:12706888-12706907 | None:intergenic | 50.0% | |
| AGCACATTTGGCAGACCTTG+AGG | + | chr1_2:12707252-12707271 | Msa0056930:CDS | 50.0% | |
| TTTGGCAGACCTTGAGGTTC+AGG | + | chr1_2:12707258-12707277 | Msa0056930:CDS | 50.0% | |
| !! | TTAGGTTGAACAGCTGAGGC+TGG | + | chr1_2:12707406-12707425 | Msa0056930:intron | 50.0% |
| AGCATCGCGAAATTGTTGGC+TGG | - | chr1_2:12707465-12707484 | None:intergenic | 50.0% | |
| GCAGAGGATATGGTCTCTAG+GGG | + | chr1_2:12707862-12707881 | Msa0056930:CDS | 50.0% | |
| !! | AGTGTTGATTTGTGGCGGAG+TGG | - | chr1_2:12707941-12707960 | None:intergenic | 50.0% |
| GCGAAACATGCGCCATACAA+CGG | - | chr1_2:12707972-12707991 | None:intergenic | 50.0% | |
| !! | TGAAGCGTCGTTTCCATGGA+CGG | - | chr1_2:12708004-12708023 | None:intergenic | 50.0% |
| ACATCGCCGACACCGATGAA+TGG | - | chr1_2:12702417-12702436 | None:intergenic | 55.0% | |
| CTTGTGAAGGCCACGTCATC+AGG | + | chr1_2:12703254-12703273 | Msa0056930:intron | 55.0% | |
| AGTGGTCGGGGTTTGAACTC+CGG | - | chr1_2:12703592-12703611 | None:intergenic | 55.0% | |
| GTGGGTCCTTGTGAAAGAGG+TGG | + | chr1_2:12704432-12704451 | Msa0056930:intron | 55.0% | |
| TGGTGGAGTTCTTGGGAGTG+AGG | - | chr1_2:12704982-12705001 | None:intergenic | 55.0% | |
| CTAATCGCGAGTCTGCCAGA+AGG | + | chr1_2:12707212-12707231 | Msa0056930:CDS | 55.0% | |
| TCGCCTACAATCACCGTCCA+TGG | + | chr1_2:12707988-12708007 | Msa0056930:CDS | 55.0% | |
| !! | GGTGTCGGCGATGTTTGCTC+TGG | + | chr1_2:12702423-12702442 | Msa0056930:CDS | 60.0% |
| ACATTGGCCCAAGTCGGGAC+CGG | + | chr1_2:12706877-12706896 | Msa0056930:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 12702153 | 12708462 | 12702153 | ID=Msa0056930;Name=Msa0056930 |
| chr1_2 | mRNA | 12702153 | 12708462 | 12702153 | ID=Msa0056930-mRNA-1;Parent=Msa0056930;Name=Msa0056930-mRNA-1;_AED=0.11;_eAED=0.11;_QI=96|1|1|1|1|1|6|316|338 |
| chr1_2 | exon | 12702153 | 12702479 | 12702153 | ID=Msa0056930-mRNA-1:exon:4930;Parent=Msa0056930-mRNA-1 |
| chr1_2 | exon | 12704914 | 12705043 | 12704914 | ID=Msa0056930-mRNA-1:exon:4931;Parent=Msa0056930-mRNA-1 |
| chr1_2 | exon | 12705845 | 12706004 | 12705845 | ID=Msa0056930-mRNA-1:exon:4932;Parent=Msa0056930-mRNA-1 |
| chr1_2 | exon | 12707204 | 12707279 | 12707204 | ID=Msa0056930-mRNA-1:exon:4933;Parent=Msa0056930-mRNA-1 |
| chr1_2 | exon | 12707410 | 12707535 | 12707410 | ID=Msa0056930-mRNA-1:exon:4934;Parent=Msa0056930-mRNA-1 |
| chr1_2 | exon | 12707853 | 12708462 | 12707853 | ID=Msa0056930-mRNA-1:exon:4935;Parent=Msa0056930-mRNA-1 |
| chr1_2 | five_prime_UTR | 12702153 | 12702248 | 12702153 | ID=Msa0056930-mRNA-1:five_prime_utr;Parent=Msa0056930-mRNA-1 |
| chr1_2 | CDS | 12702249 | 12702479 | 12702249 | ID=Msa0056930-mRNA-1:cds;Parent=Msa0056930-mRNA-1 |
| chr1_2 | CDS | 12704914 | 12705043 | 12704914 | ID=Msa0056930-mRNA-1:cds;Parent=Msa0056930-mRNA-1 |
| chr1_2 | CDS | 12705845 | 12706004 | 12705845 | ID=Msa0056930-mRNA-1:cds;Parent=Msa0056930-mRNA-1 |
| chr1_2 | CDS | 12707204 | 12707279 | 12707204 | ID=Msa0056930-mRNA-1:cds;Parent=Msa0056930-mRNA-1 |
| chr1_2 | CDS | 12707410 | 12707535 | 12707410 | ID=Msa0056930-mRNA-1:cds;Parent=Msa0056930-mRNA-1 |
| chr1_2 | CDS | 12707853 | 12708146 | 12707853 | ID=Msa0056930-mRNA-1:cds;Parent=Msa0056930-mRNA-1 |
| chr1_2 | three_prime_UTR | 12708147 | 12708462 | 12708147 | ID=Msa0056930-mRNA-1:three_prime_utr;Parent=Msa0056930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
